Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181470 | XP_024625123.1 | 76.812 | 207 | 9 | 2 | 1 | 171 | 1 | 204 | 5.98e-101 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181470 | sp|Q67XT3|SPC24_ARATH | 33.824 | 204 | 93 | 3 | 3 | 170 | 2 | 199 | 9.41e-33 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181470 | G7IET0 | 76.699 | 206 | 10 | 2 | 1 | 171 | 1 | 203 | 7.65e-101 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0181470 | 0.816392 | 5.663073e-52 | -8.615850e-47 |
| Msa0081930 | Msa0181470 | 0.800409 | 1.460624e-48 | -8.615850e-47 |
| Msa0133520 | Msa0181470 | 0.901432 | 2.696035e-78 | -8.615850e-47 |
| Msa0136070 | Msa0181470 | 0.803166 | 3.969589e-49 | -8.615850e-47 |
| Msa0157290 | Msa0181470 | 0.815640 | 8.334157e-52 | -8.615850e-47 |
| Msa0181470 | Msa0188680 | -0.810418 | 1.164207e-50 | -8.615850e-47 |
| Msa0181470 | Msa0307830 | -0.801316 | 9.536198e-49 | -8.615850e-47 |
| Msa0181470 | Msa0813740 | 0.800722 | 1.261572e-48 | -8.615850e-47 |
| Msa0181470 | Msa0827040 | 0.811939 | 5.446569e-51 | -8.615850e-47 |
| Msa0181470 | Msa0850960 | 0.804193 | 2.429968e-49 | -8.615850e-47 |
| Msa0181470 | Msa0880140 | 0.818662 | 1.744093e-52 | -8.615850e-47 |
| Msa0181470 | Msa0938220 | 0.802992 | 4.312446e-49 | -8.615850e-47 |
| Msa0181470 | Msa1082500 | 0.806290 | 8.838530e-50 | -8.615850e-47 |
| Msa0181470 | Msa1214890 | 0.803134 | 4.030344e-49 | -8.615850e-47 |
| Msa0181470 | Msa1264020 | 0.808717 | 2.699803e-50 | -8.615850e-47 |
| Msa0181470 | Msa1283840 | 0.802616 | 5.154373e-49 | -8.615850e-47 |
| Msa0181470 | Msa1284260 | 0.800372 | 1.486759e-48 | -8.615850e-47 |
| Msa0181470 | Msa1331910 | 0.800873 | 1.174869e-48 | -8.615850e-47 |
| Msa0181470 | Msa1400190 | 0.803535 | 3.328589e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181470 | MtrunA17_Chr1g0203021 | 76.699 | 206 | 10 | 2 | 1 | 171 | 1 | 203 | 1.47e-104 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181470 | AT3G08880.1 | 33.824 | 204 | 93 | 3 | 3 | 170 | 2 | 199 | 9.56e-34 | 118 |
| Msa0181470 | AT5G01570.3 | 32.353 | 204 | 93 | 7 | 4 | 170 | 3 | 198 | 1.38e-21 | 87.0 |
| Msa0181470 | AT5G01570.2 | 32.353 | 204 | 93 | 7 | 4 | 170 | 3 | 198 | 1.38e-21 | 87.0 |
| Msa0181470 | AT5G01570.5 | 32.178 | 202 | 92 | 7 | 4 | 168 | 3 | 196 | 4.18e-20 | 83.2 |
| Msa0181470 | AT5G01570.1 | 31.818 | 198 | 90 | 7 | 4 | 164 | 3 | 192 | 7.49e-19 | 80.5 |
Find 45 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTTCTTCCACATAAA+TGG | 0.235775 | 1_4:-69695677 | Msa0181470:exon |
| GGAGAATTGAGTTTGAAAAT+TGG | 0.247906 | 1_4:+69695757 | None:intergenic |
| GAGAATTGAGTTTGAAAATT+GGG | 0.282802 | 1_4:+69695758 | None:intergenic |
| ATTGGAAGAAGAAGCGAAAT+TGG | 0.296363 | 1_4:+69695736 | None:intergenic |
| AATTGAGCATTGAACTTTGT+TGG | 0.296615 | 1_4:+69691707 | None:intergenic |
| TTTGACTGATCATCCAAGTT+TGG | 0.336279 | 1_4:+69692046 | None:intergenic |
| CACGAATATTGTTCCAAACT+TGG | 0.342485 | 1_4:-69692059 | Msa0181470:CDS |
| AACTCAATATTGAAATTGTA+AGG | 0.372422 | 1_4:+69691677 | None:intergenic |
| CTCATTGAGGTCAGAGTGGC+TGG | 0.375458 | 1_4:+69695510 | None:intergenic |
| GACTGCTGCTGATGCGGATC+TGG | 0.380027 | 1_4:-69692914 | Msa0181470:CDS |
| TGTTGACTACTTAGTTTCTC+TGG | 0.380494 | 1_4:-69691655 | Msa0181470:three_prime_UTR |
| CTCAAATTGAGTGCTATGTT+AGG | 0.393782 | 1_4:-69691733 | Msa0181470:three_prime_UTR |
| ATCTAAACTCCTCTTTCAAC+AGG | 0.403143 | 1_4:+69692848 | None:intergenic |
| AATTGCAGATATTGTTGAAA+AGG | 0.411581 | 1_4:-69691898 | Msa0181470:intron |
| TTGATGTATGTAATGACATC+TGG | 0.434943 | 1_4:-69691824 | Msa0181470:CDS |
| CTTAGTGAGGTCATTGCCTA+TGG | 0.453395 | 1_4:+69695612 | None:intergenic |
| GTCGAAGTTTCTAGAAGAAT+CGG | 0.487528 | 1_4:+69695651 | None:intergenic |
| GTGTTTCCCTCCCACTCAAA+GGG | 0.487914 | 1_4:-69695793 | Msa0181470:five_prime_UTR |
| CATAGGCAATGACCTCACTA+AGG | 0.499057 | 1_4:-69695611 | Msa0181470:CDS |
| GTGTACATCTTCACATGGTT+TGG | 0.501267 | 1_4:-69691631 | Msa0181470:three_prime_UTR |
| CTGGTGTGTACATCTTCACA+TGG | 0.502955 | 1_4:-69691636 | Msa0181470:three_prime_UTR |
| AGAATTGAGTTTGAAAATTG+GGG | 0.503979 | 1_4:+69695759 | None:intergenic |
| GTTGAGATCACGGTCATTAG+TGG | 0.510091 | 1_4:+69695576 | None:intergenic |
| CACGTCAAACATGTCTCTGT+TGG | 0.511307 | 1_4:-69691781 | Msa0181470:three_prime_UTR |
| GCTTCTTCTTCCAATTTCGA+AGG | 0.532125 | 1_4:-69695728 | Msa0181470:five_prime_UTR |
| GTGGATCAGCTTATTTCCAT+AGG | 0.536627 | 1_4:-69695628 | Msa0181470:CDS |
| ATCTGAGACTGCTGCTGATG+CGG | 0.539806 | 1_4:-69692920 | Msa0181470:CDS |
| AGAGTGGCTGGAAGAAGAAA+CGG | 0.541444 | 1_4:+69695522 | None:intergenic |
| AAAAGAACGCCTGTTGAAAG+AGG | 0.543828 | 1_4:-69692857 | Msa0181470:CDS |
| AGTGTTTCCCTCCCACTCAA+AGG | 0.564858 | 1_4:-69695794 | Msa0181470:five_prime_UTR |
| GAGGTTCTCTCCTCGTTCCA+AGG | 0.565622 | 1_4:-69695490 | Msa0181470:intron |
| GAGAGAGGATGTTGAGATCA+CGG | 0.580539 | 1_4:+69695566 | None:intergenic |
| AAGAAACGGAGAGTGTGTGG+TGG | 0.583118 | 1_4:+69695536 | None:intergenic |
| AGAATCGGAAGCCATTTATG+TGG | 0.590207 | 1_4:+69695666 | None:intergenic |
| TTGAGATCACGGTCATTAGT+GGG | 0.593698 | 1_4:+69695577 | None:intergenic |
| AGATGTCATTACATACATCA+AGG | 0.596678 | 1_4:+69691826 | None:intergenic |
| TGTGGTGGAGACATTGAGAG+AGG | 0.630170 | 1_4:+69695551 | None:intergenic |
| AGTAAATTGACCTTGGAACG+AGG | 0.633269 | 1_4:+69695480 | None:intergenic |
| CAGCCACTCTGACCTCAATG+AGG | 0.636008 | 1_4:-69695509 | Msa0181470:CDS |
| ACGAGGAGAGAACCTCATTG+AGG | 0.656992 | 1_4:+69695497 | None:intergenic |
| TGTTTCCCTCCCACTCAAAG+GGG | 0.687364 | 1_4:-69695792 | Msa0181470:five_prime_UTR |
| AAGAAGAAACGGAGAGTGTG+TGG | 0.703735 | 1_4:+69695533 | None:intergenic |
| GATCTTGCAAAACCTTAGTG+AGG | 0.708093 | 1_4:+69695599 | None:intergenic |
| GAACCTCATTGAGGTCAGAG+TGG | 0.709107 | 1_4:+69695506 | None:intergenic |
| TTCTTCTAGAAACTTCGACG+TGG | 0.712488 | 1_4:-69695647 | Msa0181470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTATAT+TGG | - | chr1_4:69692035-69692054 | Msa0181470:CDS | 0.0% |
| !!! | TTTTTTTTTTTTTTTATATT+GGG | - | chr1_4:69692036-69692055 | Msa0181470:CDS | 0.0% |
| !!! | TTTAAAATGAACATAAATTT+TGG | + | chr1_4:69694849-69694868 | None:intergenic | 10.0% |
| !!! | ATTTGATAGTAAGAAAAAAT+TGG | - | chr1_4:69692171-69692190 | Msa0181470:intron | 15.0% |
| !!! | TTTGATAGTAAGAAAAAATT+GGG | - | chr1_4:69692172-69692191 | Msa0181470:intron | 15.0% |
| !! | ACATAGTTAAGTAATAATAA+TGG | - | chr1_4:69692503-69692522 | Msa0181470:intron | 15.0% |
| !! | ATATACAAATAAAAATAAGC+TGG | + | chr1_4:69694187-69694206 | None:intergenic | 15.0% |
| !!! | ACATAATTGATTTATTTCAA+CGG | - | chr1_4:69694223-69694242 | Msa0181470:intron | 15.0% |
| !! | ATATAAGTTCCAATTTATAT+GGG | + | chr1_4:69695278-69695297 | None:intergenic | 15.0% |
| !! | AATATAAGTTCCAATTTATA+TGG | + | chr1_4:69695279-69695298 | None:intergenic | 15.0% |
| !!! | TTATTCTTATATTTTGTTTC+AGG | - | chr1_4:69695298-69695317 | Msa0181470:intron | 15.0% |
| !! | AACAGCAAATAAATAATGAT+GGG | + | chr1_4:69692081-69692100 | None:intergenic | 20.0% |
| !! | AAACAGCAAATAAATAATGA+TGG | + | chr1_4:69692082-69692101 | None:intergenic | 20.0% |
| !! | ATTTGGTATGTTATGTTTAT+TGG | - | chr1_4:69692243-69692262 | Msa0181470:intron | 20.0% |
| !! | TTTGGTATGTTATGTTTATT+GGG | - | chr1_4:69692244-69692263 | Msa0181470:intron | 20.0% |
| !! | AGAGTATAACTATGTAAAAA+TGG | - | chr1_4:69692403-69692422 | Msa0181470:intron | 20.0% |
| !!! | TAAAGCAATGCTTTAAAATA+TGG | - | chr1_4:69692624-69692643 | Msa0181470:intron | 20.0% |
| !! | TGATAATTAGTAAAGTTCAT+TGG | - | chr1_4:69692691-69692710 | Msa0181470:intron | 20.0% |
| !! | GATAATTAGTAAAGTTCATT+GGG | - | chr1_4:69692692-69692711 | Msa0181470:intron | 20.0% |
| !!! | AGTTAGAACTTTTTGTAAAA+TGG | - | chr1_4:69692790-69692809 | Msa0181470:intron | 20.0% |
| !!! | GTTAGAACTTTTTGTAAAAT+GGG | - | chr1_4:69692791-69692810 | Msa0181470:intron | 20.0% |
| !! | TAAGTTTATGAATGAAATTG+AGG | - | chr1_4:69693401-69693420 | Msa0181470:intron | 20.0% |
| !! | ATTCACCAAAATTAATAGAT+TGG | - | chr1_4:69693557-69693576 | Msa0181470:intron | 20.0% |
| !!! | TGAGTGTGTTTTTTTTTTTT+TGG | - | chr1_4:69693670-69693689 | Msa0181470:intron | 20.0% |
| !! | ATATACAACTTTCCAATTAA+GGG | + | chr1_4:69693904-69693923 | None:intergenic | 20.0% |
| !! | TATATACAACTTTCCAATTA+AGG | + | chr1_4:69693905-69693924 | None:intergenic | 20.0% |
| !! | TAATTGGAAAGTTGTATATA+AGG | - | chr1_4:69693905-69693924 | Msa0181470:intron | 20.0% |
| !!! | ATTAGAAGAAATTGATTTTG+AGG | - | chr1_4:69693954-69693973 | Msa0181470:intron | 20.0% |
| !! | AACAAGAATGATGATTATAT+TGG | - | chr1_4:69694018-69694037 | Msa0181470:intron | 20.0% |
| !! | AATGATGATTATATTGGAAA+AGG | - | chr1_4:69694024-69694043 | Msa0181470:intron | 20.0% |
| !! | ATGATGATTATATTGGAAAA+GGG | - | chr1_4:69694025-69694044 | Msa0181470:intron | 20.0% |
| !! | TAAAAGGAATTACTTTAGAT+GGG | + | chr1_4:69694331-69694350 | None:intergenic | 20.0% |
| !!! | ATGTTTTTAGAAAGTAAACA+GGG | + | chr1_4:69694810-69694829 | None:intergenic | 20.0% |
| !!! | AATGTTTTTAGAAAGTAAAC+AGG | + | chr1_4:69694811-69694830 | None:intergenic | 20.0% |
| !! | AGCTATACATAATATATTTC+CGG | - | chr1_4:69694934-69694953 | Msa0181470:intron | 20.0% |
| !!! | AAACAATGAAAACAATGTTT+TGG | - | chr1_4:69694957-69694976 | Msa0181470:intron | 20.0% |
| !! | ACAGAAATTGTAAAAGAAAA+TGG | - | chr1_4:69695016-69695035 | Msa0181470:intron | 20.0% |
| !! | TTTACATTTCCCATATAAAT+TGG | - | chr1_4:69695266-69695285 | Msa0181470:intron | 20.0% |
| !! | ATATCTGCAATTAAAGTTTA+AGG | + | chr1_4:69695500-69695519 | None:intergenic | 20.0% |
| !! | AACTCAATATTGAAATTGTA+AGG | + | chr1_4:69695732-69695751 | None:intergenic | 20.0% |
| ! | AGAATTGAGTTTGAAAATTG+GGG | + | chr1_4:69691650-69691669 | None:intergenic | 25.0% |
| ! | GAGAATTGAGTTTGAAAATT+GGG | + | chr1_4:69691651-69691670 | None:intergenic | 25.0% |
| !!! | TAATTATTTTGTGGCAGAAA+CGG | + | chr1_4:69691974-69691993 | None:intergenic | 25.0% |
| ! | TTTCTGCCACAAAATAATTA+TGG | - | chr1_4:69691974-69691993 | Msa0181470:intron | 25.0% |
| ! | TTCTGCCACAAAATAATTAT+GGG | - | chr1_4:69691975-69691994 | Msa0181470:intron | 25.0% |
| !! | TACTTTGCTAATTTTGTGTT+TGG | - | chr1_4:69692117-69692136 | Msa0181470:intron | 25.0% |
| ! | AATGTTTCTTACACTTATTG+TGG | - | chr1_4:69692212-69692231 | Msa0181470:intron | 25.0% |
| !! | CAATTGGGATTGTTATTATA+TGG | - | chr1_4:69692267-69692286 | Msa0181470:intron | 25.0% |
| ! | GTTATTATATGGAGAACTAT+TGG | - | chr1_4:69692278-69692297 | Msa0181470:intron | 25.0% |
| !! | CTCTTTTTATATCATTGTCT+TGG | - | chr1_4:69692466-69692485 | Msa0181470:intron | 25.0% |
| !!! | GCTTTAAAATATGGAAATAG+CGG | - | chr1_4:69692633-69692652 | Msa0181470:intron | 25.0% |
| ! | TTATCATCAAAATCTACGTA+CGG | + | chr1_4:69692677-69692696 | None:intergenic | 25.0% |
| !! | ATCTCAAAATAATTGCTGTT+TGG | - | chr1_4:69692948-69692967 | Msa0181470:CDS | 25.0% |
| !! | GTAATTTTGTCTAAGAAACA+CGG | - | chr1_4:69693112-69693131 | Msa0181470:intron | 25.0% |
| !! | TAATTTTGTCTAAGAAACAC+GGG | - | chr1_4:69693113-69693132 | Msa0181470:intron | 25.0% |
| !! | AGCAGAAATAAAATGGTTTT+TGG | - | chr1_4:69693230-69693249 | Msa0181470:intron | 25.0% |
| !! | GCAGAAATAAAATGGTTTTT+GGG | - | chr1_4:69693231-69693250 | Msa0181470:intron | 25.0% |
| ! | TTCAAAATACAAGTTTGATC+TGG | - | chr1_4:69693483-69693502 | Msa0181470:intron | 25.0% |
| !!! | CTGGTATAGTTTTATTTATG+AGG | - | chr1_4:69693746-69693765 | Msa0181470:intron | 25.0% |
| ! | TTTATGAGGACTATGTTATT+TGG | - | chr1_4:69693760-69693779 | Msa0181470:intron | 25.0% |
| !! | TTCTAATTCTCATTGAGTTT+TGG | + | chr1_4:69693941-69693960 | None:intergenic | 25.0% |
| ! | TGATGATTATATTGGAAAAG+GGG | - | chr1_4:69694026-69694045 | Msa0181470:intron | 25.0% |
| ! | CTAAAAGGAATTACTTTAGA+TGG | + | chr1_4:69694332-69694351 | None:intergenic | 25.0% |
| !! | AACATTGTTTTCATTGTTTC+CGG | + | chr1_4:69694956-69694975 | None:intergenic | 25.0% |
| ! | AATTGTAAAAGAAAATGGTG+AGG | - | chr1_4:69695021-69695040 | Msa0181470:intron | 25.0% |
| ! | AACAAATAGCAATACATATG+AGG | + | chr1_4:69695142-69695161 | None:intergenic | 25.0% |
| !! | AACAATTCTTGTCTTTTCAA+AGG | + | chr1_4:69695473-69695492 | None:intergenic | 25.0% |
| ! | AATTGCAGATATTGTTGAAA+AGG | - | chr1_4:69695508-69695527 | Msa0181470:CDS | 25.0% |
| ! | TGTTGAAAAGGAAAAAAATG+CGG | - | chr1_4:69695520-69695539 | Msa0181470:CDS | 25.0% |
| ! | ACACTCTCTTTTGATAAATG+AGG | + | chr1_4:69691597-69691616 | None:intergenic | 30.0% |
| GGAGAATTGAGTTTGAAAAT+TGG | + | chr1_4:69691652-69691671 | None:intergenic | 30.0% | |
| ! | TTTTCTCTTTCCTTCGAAAT+TGG | + | chr1_4:69691691-69691710 | None:intergenic | 30.0% |
| TTCTTCTTCTTCCACATAAA+TGG | - | chr1_4:69691729-69691748 | Msa0181470:three_prime_UTR | 30.0% | |
| TCTGCCACAAAATAATTATG+GGG | - | chr1_4:69691976-69691995 | Msa0181470:intron | 30.0% | |
| !! | CAAACCCCATAATTATTTTG+TGG | + | chr1_4:69691983-69692002 | None:intergenic | 30.0% |
| ! | TATATTGGGTTTGCGATTTT+TGG | - | chr1_4:69692050-69692069 | Msa0181470:CDS | 30.0% |
| !!! | TTATTTGCTGTTTGTGCTTT+TGG | - | chr1_4:69692089-69692108 | Msa0181470:CDS | 30.0% |
| TTATTGTGGCTGTGATTATT+TGG | - | chr1_4:69692226-69692245 | Msa0181470:intron | 30.0% | |
| TGTTATGTTTATTGGGCAAT+TGG | - | chr1_4:69692251-69692270 | Msa0181470:intron | 30.0% | |
| GTTATGTTTATTGGGCAATT+GGG | - | chr1_4:69692252-69692271 | Msa0181470:intron | 30.0% | |
| TATATGGAGAACTATTGGAT+TGG | - | chr1_4:69692283-69692302 | Msa0181470:intron | 30.0% | |
| AGATGTTGCATGTGTAATTA+AGG | - | chr1_4:69692354-69692373 | Msa0181470:intron | 30.0% | |
| AACTATGTAAAAATGGAGTG+TGG | - | chr1_4:69692410-69692429 | Msa0181470:intron | 30.0% | |
| TTATATCATTGTCTTGGATG+TGG | - | chr1_4:69692472-69692491 | Msa0181470:intron | 30.0% | |
| AAGTTCACTTGTAGTTTAAC+TGG | - | chr1_4:69692556-69692575 | Msa0181470:intron | 30.0% | |
| ! | AACTTTTTGTAAAATGGGTG+TGG | - | chr1_4:69692796-69692815 | Msa0181470:intron | 30.0% |
| !!! | CAATATTTTGGTTGGACAAA+TGG | - | chr1_4:69693007-69693026 | Msa0181470:intron | 30.0% |
| TCTCCAACATCTATCTTTAA+AGG | + | chr1_4:69693046-69693065 | None:intergenic | 30.0% | |
| ! | GAAAAAGAGGTTGTTTCAAA+GGG | - | chr1_4:69693152-69693171 | Msa0181470:intron | 30.0% |
| GTGGAAAAGCAGAAATAAAA+TGG | - | chr1_4:69693223-69693242 | Msa0181470:intron | 30.0% | |
| GTAAAATCACATTGTGGAAT+AGG | - | chr1_4:69693290-69693309 | Msa0181470:intron | 30.0% | |
| GTTTATGAATGAAATTGAGG+TGG | - | chr1_4:69693404-69693423 | Msa0181470:intron | 30.0% | |
| AAAATACAAGTTTGATCTGG+TGG | - | chr1_4:69693486-69693505 | Msa0181470:intron | 30.0% | |
| CACCAAAATTAATAGATTGG+AGG | - | chr1_4:69693560-69693579 | Msa0181470:intron | 30.0% | |
| ! | CACCTCCAATCTATTAATTT+TGG | + | chr1_4:69693565-69693584 | None:intergenic | 30.0% |
| CAAAATTAATAGATTGGAGG+TGG | - | chr1_4:69693563-69693582 | Msa0181470:intron | 30.0% | |
| ATGGTTATTAGAGTTTACCT+TGG | - | chr1_4:69693714-69693733 | Msa0181470:intron | 30.0% | |
| ! | GACTATGTTATTTGGTTGAA+GGG | - | chr1_4:69693768-69693787 | Msa0181470:intron | 30.0% |
| TGGAAAGTTGTATATAAGGA+TGG | - | chr1_4:69693909-69693928 | Msa0181470:intron | 30.0% | |
| !!! | TTCTCATTGAGTTTTGGTTT+TGG | + | chr1_4:69693935-69693954 | None:intergenic | 30.0% |
| GATTTATTTCAACGGATATG+TGG | - | chr1_4:69694231-69694250 | Msa0181470:intron | 30.0% | |
| AATCTGATTCAACTAAGCAT+TGG | + | chr1_4:69694420-69694439 | None:intergenic | 30.0% | |
| ! | ATGACTGTGTTGATACAAAA+TGG | + | chr1_4:69694661-69694680 | None:intergenic | 30.0% |
| ! | GTAATTTCTTTTTCTGCTCT+CGG | + | chr1_4:69694726-69694745 | None:intergenic | 30.0% |
| CAATTGTAATAGAGAGAAGA+TGG | - | chr1_4:69694904-69694923 | Msa0181470:intron | 30.0% | |
| GAAAATGGTGAGGAAAATAT+TGG | - | chr1_4:69695031-69695050 | Msa0181470:intron | 30.0% | |
| TCATGTTCGCATCAATATTA+TGG | - | chr1_4:69695164-69695183 | Msa0181470:intron | 30.0% | |
| ! | ACAAGAACTGTTTTCAGTTT+GGG | + | chr1_4:69695244-69695263 | None:intergenic | 30.0% |
| ! | AACAAGAACTGTTTTCAGTT+TGG | + | chr1_4:69695245-69695264 | None:intergenic | 30.0% |
| GATGATCAGTCAAAAATTTC+AGG | - | chr1_4:69695369-69695388 | Msa0181470:intron | 30.0% | |
| AGAATGGTAAACTCAACAAA+AGG | + | chr1_4:69695401-69695420 | None:intergenic | 30.0% | |
| AAAACCTGAAGAAGAAACAT+GGG | + | chr1_4:69695430-69695449 | None:intergenic | 30.0% | |
| AGATGTCATTACATACATCA+AGG | + | chr1_4:69695583-69695602 | None:intergenic | 30.0% | |
| TTGATGTATGTAATGACATC+TGG | - | chr1_4:69695582-69695601 | Msa0181470:CDS | 30.0% | |
| !! | AATTGAGCATTGAACTTTGT+TGG | + | chr1_4:69695702-69695721 | None:intergenic | 30.0% |
| !!! | TCTTTTTTTCCCCTTTGAGT+GGG | + | chr1_4:69691626-69691645 | None:intergenic | 35.0% |
| !!! | TTCTTTTTTTCCCCTTTGAG+TGG | + | chr1_4:69691627-69691646 | None:intergenic | 35.0% |
| ATTGGAAGAAGAAGCGAAAT+TGG | + | chr1_4:69691673-69691692 | None:intergenic | 35.0% | |
| ! | GTCGAAGTTTCTAGAAGAAT+CGG | + | chr1_4:69691758-69691777 | None:intergenic | 35.0% |
| GCAAAAGAGTAAATTGACCT+TGG | + | chr1_4:69691936-69691955 | None:intergenic | 35.0% | |
| ! | GAGAACTATTGGATTGGAAT+TGG | - | chr1_4:69692289-69692308 | Msa0181470:intron | 35.0% |
| AAACTACACACGAACAGTAA+GGG | + | chr1_4:69692317-69692336 | None:intergenic | 35.0% | |
| TAAACTACACACGAACAGTA+AGG | + | chr1_4:69692318-69692337 | None:intergenic | 35.0% | |
| CTTGTAGTTTAACTGGAAGT+AGG | - | chr1_4:69692563-69692582 | Msa0181470:intron | 35.0% | |
| CTGTTTGGATAGAATGAGAA+AGG | - | chr1_4:69692963-69692982 | Msa0181470:CDS | 35.0% | |
| !!! | CAGCTAGACAATATTTTGGT+TGG | - | chr1_4:69692999-69693018 | Msa0181470:intron | 35.0% |
| TTGGACAAATGGATAGTAGA+TGG | - | chr1_4:69693018-69693037 | Msa0181470:intron | 35.0% | |
| ! | GCACCTTTAAAGATAGATGT+TGG | - | chr1_4:69693040-69693059 | Msa0181470:intron | 35.0% |
| ! | GGAAAAAGAGGTTGTTTCAA+AGG | - | chr1_4:69693151-69693170 | Msa0181470:intron | 35.0% |
| GAATCGGTAAAATCACATTG+TGG | - | chr1_4:69693284-69693303 | Msa0181470:intron | 35.0% | |
| GCTACTCAATTCCTAGAATT+TGG | + | chr1_4:69693324-69693343 | None:intergenic | 35.0% | |
| TTGAGTAGCCAATATCTCAA+TGG | - | chr1_4:69693335-69693354 | Msa0181470:intron | 35.0% | |
| TGAATGAAATTGAGGTGGTA+TGG | - | chr1_4:69693409-69693428 | Msa0181470:intron | 35.0% | |
| AGAAAGTAGATCATAGGAAG+TGG | - | chr1_4:69693510-69693529 | Msa0181470:intron | 35.0% | |
| GAAAGTAGATCATAGGAAGT+GGG | - | chr1_4:69693511-69693530 | Msa0181470:intron | 35.0% | |
| AATTAATAGATTGGAGGTGG+TGG | - | chr1_4:69693566-69693585 | Msa0181470:intron | 35.0% | |
| CCTGTAGAATTCTACATGAT+GGG | - | chr1_4:69693616-69693635 | Msa0181470:intron | 35.0% | |
| GTTATCTTGCAAGAATCAGA+TGG | - | chr1_4:69693695-69693714 | Msa0181470:intron | 35.0% | |
| ! | GGACTATGTTATTTGGTTGA+AGG | - | chr1_4:69693767-69693786 | Msa0181470:intron | 35.0% |
| ! | TATGTTATTTGGTTGAAGGG+TGG | - | chr1_4:69693771-69693790 | Msa0181470:intron | 35.0% |
| !! | ATTAAGGGCATCATCATAGT+AGG | + | chr1_4:69693889-69693908 | None:intergenic | 35.0% |
| ! | ACTATGATGATGCCCTTAAT+TGG | - | chr1_4:69693889-69693908 | Msa0181470:intron | 35.0% |
| GACAAAAGATCTATTCATCC+TGG | + | chr1_4:69694053-69694072 | None:intergenic | 35.0% | |
| AATTCAGCTATGTGGAATAC+CGG | + | chr1_4:69694267-69694286 | None:intergenic | 35.0% | |
| GAAGCAAAAATTCAGCTATG+TGG | + | chr1_4:69694275-69694294 | None:intergenic | 35.0% | |
| TGGCTATTAATAGTGCATCA+CGG | + | chr1_4:69694308-69694327 | None:intergenic | 35.0% | |
| AAGGAATTACTTTAGATGGG+TGG | + | chr1_4:69694328-69694347 | None:intergenic | 35.0% | |
| TATGAGCTAGTTGAGCTAAA+AGG | + | chr1_4:69694347-69694366 | None:intergenic | 35.0% | |
| ! | TAGCATGCTCAATTTTCTGT+TGG | + | chr1_4:69694465-69694484 | None:intergenic | 35.0% |
| ATCTAAACTCCTCTTTCAAC+AGG | + | chr1_4:69694561-69694580 | None:intergenic | 35.0% | |
| AAATTGAGCAAGAAAAGCAG+AGG | - | chr1_4:69694749-69694768 | Msa0181470:intron | 35.0% | |
| TGAGAAACATGAGAAGTAAC+AGG | - | chr1_4:69695097-69695116 | Msa0181470:intron | 35.0% | |
| CACGAATATTGTTCCAAACT+TGG | - | chr1_4:69695347-69695366 | Msa0181470:intron | 35.0% | |
| TTTGACTGATCATCCAAGTT+TGG | + | chr1_4:69695363-69695382 | None:intergenic | 35.0% | |
| AAACCTGAAGAAGAAACATG+GGG | + | chr1_4:69695429-69695448 | None:intergenic | 35.0% | |
| GAAAACCTGAAGAAGAAACA+TGG | + | chr1_4:69695431-69695450 | None:intergenic | 35.0% | |
| TGAAAAGGAAAAAAATGCGG+CGG | - | chr1_4:69695523-69695542 | Msa0181470:CDS | 35.0% | |
| CTCAAATTGAGTGCTATGTT+AGG | - | chr1_4:69695673-69695692 | Msa0181470:exon | 35.0% | |
| ! | TGTTGACTACTTAGTTTCTC+TGG | - | chr1_4:69695751-69695770 | Msa0181470:five_prime_UTR | 35.0% |
| GCTTCTTCTTCCAATTTCGA+AGG | - | chr1_4:69691678-69691697 | Msa0181470:three_prime_UTR | 40.0% | |
| GAAGAAGAAGAAGAAGACGA+AGG | + | chr1_4:69691715-69691734 | None:intergenic | 40.0% | |
| AGAATCGGAAGCCATTTATG+TGG | + | chr1_4:69691743-69691762 | None:intergenic | 40.0% | |
| ! | TTCTTCTAGAAACTTCGACG+TGG | - | chr1_4:69691759-69691778 | Msa0181470:three_prime_UTR | 40.0% |
| GTGGATCAGCTTATTTCCAT+AGG | - | chr1_4:69691778-69691797 | Msa0181470:three_prime_UTR | 40.0% | |
| GATCTTGCAAAACCTTAGTG+AGG | + | chr1_4:69691810-69691829 | None:intergenic | 40.0% | |
| TTGAGATCACGGTCATTAGT+GGG | + | chr1_4:69691832-69691851 | None:intergenic | 40.0% | |
| AGTAAATTGACCTTGGAACG+AGG | + | chr1_4:69691929-69691948 | None:intergenic | 40.0% | |
| GAAACGGAGAAGAGAGAATA+GGG | + | chr1_4:69691958-69691977 | None:intergenic | 40.0% | |
| AGAAACGGAGAAGAGAGAAT+AGG | + | chr1_4:69691959-69691978 | None:intergenic | 40.0% | |
| AAGTTCATTGGGTCGTTAGT+TGG | - | chr1_4:69692703-69692722 | Msa0181470:intron | 40.0% | |
| AGTTCATTGGGTCGTTAGTT+GGG | - | chr1_4:69692704-69692723 | Msa0181470:intron | 40.0% | |
| AGAGTGTGTTGAGAGAGATA+TGG | - | chr1_4:69692729-69692748 | Msa0181470:intron | 40.0% | |
| GAGTGTGTTGAGAGAGATAT+GGG | - | chr1_4:69692730-69692749 | Msa0181470:intron | 40.0% | |
| AGTGTGTTGAGAGAGATATG+GGG | - | chr1_4:69692731-69692750 | Msa0181470:intron | 40.0% | |
| TTGGGTGTACAGAATTTGAG+AGG | - | chr1_4:69692762-69692781 | Msa0181470:intron | 40.0% | |
| ! | AAGACAACTTTTGTGCGCAA+AGG | - | chr1_4:69692833-69692852 | Msa0181470:intron | 40.0% |
| GCTAAATATGGAAGGCAAGA+TGG | - | chr1_4:69692864-69692883 | Msa0181470:CDS | 40.0% | |
| !! | TGGTTGGTAATGATTCCAGT+TGG | - | chr1_4:69692895-69692914 | Msa0181470:CDS | 40.0% |
| !! | TTGGTAATGATTCCAGTTGG+TGG | - | chr1_4:69692898-69692917 | Msa0181470:CDS | 40.0% |
| AGACATCAAAGCGATGGAAA+AGG | - | chr1_4:69692923-69692942 | Msa0181470:CDS | 40.0% | |
| GACATCAAAGCGATGGAAAA+GGG | - | chr1_4:69692924-69692943 | Msa0181470:CDS | 40.0% | |
| ! | GTGGCAGCTAGACAATATTT+TGG | - | chr1_4:69692995-69693014 | Msa0181470:intron | 40.0% |
| TACCATAGCAAACAACAACG+AGG | - | chr1_4:69693071-69693090 | Msa0181470:intron | 40.0% | |
| TTGTCTAAGAAACACGGGAA+TGG | - | chr1_4:69693118-69693137 | Msa0181470:intron | 40.0% | |
| TGGGAGAAAATCATTCGAGT+TGG | - | chr1_4:69693250-69693269 | Msa0181470:intron | 40.0% | |
| !! | ATTCGAGTTGGACGAGATAT+TGG | - | chr1_4:69693262-69693281 | Msa0181470:intron | 40.0% |
| GTTGGACGAGATATTGGAAT+CGG | - | chr1_4:69693268-69693287 | Msa0181470:intron | 40.0% | |
| ! | CACATTGTGGAATAGGTTGA+AGG | - | chr1_4:69693297-69693316 | Msa0181470:intron | 40.0% |
| AGGTTGAAGGTCCAAATTCT+AGG | - | chr1_4:69693310-69693329 | Msa0181470:intron | 40.0% | |
| TGCTCAGCCTTTAGTATGTT+TGG | - | chr1_4:69693358-69693377 | Msa0181470:intron | 40.0% | |
| GCTCAGCCTTTAGTATGTTT+GGG | - | chr1_4:69693359-69693378 | Msa0181470:intron | 40.0% | |
| CTCAGCCTTTAGTATGTTTG+GGG | - | chr1_4:69693360-69693379 | Msa0181470:intron | 40.0% | |
| TTGAGGTGGTATGGTTTAAC+AGG | - | chr1_4:69693418-69693437 | Msa0181470:intron | 40.0% | |
| AACAGGAAACAGTTGTATCG+TGG | - | chr1_4:69693435-69693454 | Msa0181470:intron | 40.0% | |
| ACAGGAAACAGTTGTATCGT+GGG | - | chr1_4:69693436-69693455 | Msa0181470:intron | 40.0% | |
| TAGAATTCTACAGGCTTCCA+CGG | + | chr1_4:69693610-69693629 | None:intergenic | 40.0% | |
| GCCTGTAGAATTCTACATGA+TGG | - | chr1_4:69693615-69693634 | Msa0181470:intron | 40.0% | |
| CCCATCATGTAGAATTCTAC+AGG | + | chr1_4:69693619-69693638 | None:intergenic | 40.0% | |
| !! | ACATGATGGGCTTGTCAATA+TGG | - | chr1_4:69693629-69693648 | Msa0181470:intron | 40.0% |
| TTTACCTTGGCATTGTGTTC+TGG | - | chr1_4:69693727-69693746 | Msa0181470:intron | 40.0% | |
| TATACCAGAACACAATGCCA+AGG | + | chr1_4:69693734-69693753 | None:intergenic | 40.0% | |
| CACTGAAAACTCGTTAGAGA+TGG | + | chr1_4:69693858-69693877 | None:intergenic | 40.0% | |
| TTATATTGGAAAAGGGGACC+AGG | - | chr1_4:69694032-69694051 | Msa0181470:intron | 40.0% | |
| AAAAGAACGCCTGTTGAAAG+AGG | - | chr1_4:69694549-69694568 | Msa0181470:intron | 40.0% | |
| !! | CAGGCTCTAAGATTGTAATC+TGG | - | chr1_4:69695116-69695135 | Msa0181470:intron | 40.0% |
| AACCTGAAGAAGAAACATGG+GGG | + | chr1_4:69695428-69695447 | None:intergenic | 40.0% | |
| GTGTACATCTTCACATGGTT+TGG | - | chr1_4:69695775-69695794 | Msa0181470:five_prime_UTR | 40.0% | |
| ! | TTTTTCCCCTTTGAGTGGGA+GGG | + | chr1_4:69691622-69691641 | None:intergenic | 45.0% |
| !!! | TTTTTTCCCCTTTGAGTGGG+AGG | + | chr1_4:69691623-69691642 | None:intergenic | 45.0% |
| CTTAGTGAGGTCATTGCCTA+TGG | + | chr1_4:69691797-69691816 | None:intergenic | 45.0% | |
| CATAGGCAATGACCTCACTA+AGG | - | chr1_4:69691795-69691814 | Msa0181470:exon | 45.0% | |
| GTTGAGATCACGGTCATTAG+TGG | + | chr1_4:69691833-69691852 | None:intergenic | 45.0% | |
| GAGAGAGGATGTTGAGATCA+CGG | + | chr1_4:69691843-69691862 | None:intergenic | 45.0% | |
| ! | AAGAAGAAACGGAGAGTGTG+TGG | + | chr1_4:69691876-69691895 | None:intergenic | 45.0% |
| AGAGTGGCTGGAAGAAGAAA+CGG | + | chr1_4:69691887-69691906 | None:intergenic | 45.0% | |
| GAGTGTGGAAGTTTGCAACA+TGG | - | chr1_4:69692425-69692444 | Msa0181470:intron | 45.0% | |
| ! | ACAACTTTTGTGCGCAAAGG+CGG | - | chr1_4:69692836-69692855 | Msa0181470:intron | 45.0% |
| AAGGCGGTCATGGCTAAATA+TGG | - | chr1_4:69692852-69692871 | Msa0181470:intron | 45.0% | |
| CGGTCATGGCTAAATATGGA+AGG | - | chr1_4:69692856-69692875 | Msa0181470:CDS | 45.0% | |
| ATGAGAAAGGCAGTGAGAAG+TGG | - | chr1_4:69692976-69692995 | Msa0181470:CDS | 45.0% | |
| !! | AGCCTCGTTGTTGTTTGCTA+TGG | + | chr1_4:69693076-69693095 | None:intergenic | 45.0% |
| AGCAAACAACAACGAGGCTA+AGG | - | chr1_4:69693077-69693096 | Msa0181470:intron | 45.0% | |
| AACAACGAGGCTAAGGTGAA+TGG | - | chr1_4:69693084-69693103 | Msa0181470:intron | 45.0% | |
| GGAAATGCAGCTGGAAAAAG+AGG | - | chr1_4:69693139-69693158 | Msa0181470:intron | 45.0% | |
| ATTGACGATGTTGAGTGAGC+AGG | - | chr1_4:69693186-69693205 | Msa0181470:intron | 45.0% | |
| TTGACGATGTTGAGTGAGCA+GGG | - | chr1_4:69693187-69693206 | Msa0181470:intron | 45.0% | |
| GCTGAGCACCATTGAGATAT+TGG | + | chr1_4:69693346-69693365 | None:intergenic | 45.0% | |
| CGACTCCCCAAACATACTAA+AGG | + | chr1_4:69693368-69693387 | None:intergenic | 45.0% | |
| AAACAGTTGTATCGTGGGTC+TGG | - | chr1_4:69693441-69693460 | Msa0181470:intron | 45.0% | |
| GGTGGCAGAAAGTAGATCAT+AGG | - | chr1_4:69693504-69693523 | Msa0181470:intron | 45.0% | |
| AGTAGATCATAGGAAGTGGG+TGG | - | chr1_4:69693514-69693533 | Msa0181470:intron | 45.0% | |
| GACGTATAGAATGGGAATGG+AGG | + | chr1_4:69693830-69693849 | None:intergenic | 45.0% | |
| CAGGACGTATAGAATGGGAA+TGG | + | chr1_4:69693833-69693852 | None:intergenic | 45.0% | |
| TGGAGCAGGACGTATAGAAT+GGG | + | chr1_4:69693838-69693857 | None:intergenic | 45.0% | |
| ATGGAGCAGGACGTATAGAA+TGG | + | chr1_4:69693839-69693858 | None:intergenic | 45.0% | |
| AAACTCGTTAGAGATGGAGC+AGG | + | chr1_4:69693852-69693871 | None:intergenic | 45.0% | |
| CTATGTGGAATACCGGATAG+CGG | + | chr1_4:69694260-69694279 | None:intergenic | 45.0% | |
| AGCAAGAAAAGCAGAGGACA+AGG | - | chr1_4:69694755-69694774 | Msa0181470:intron | 45.0% | |
| GAAACATGGGGGAAAGAGAA+TGG | + | chr1_4:69695417-69695436 | None:intergenic | 45.0% | |
| TTCCCCCATGTTTCTTCTTC+AGG | - | chr1_4:69695423-69695442 | Msa0181470:intron | 45.0% | |
| CACGTCAAACATGTCTCTGT+TGG | - | chr1_4:69695625-69695644 | Msa0181470:CDS | 45.0% | |
| CTGGTGTGTACATCTTCACA+TGG | - | chr1_4:69695770-69695789 | Msa0181470:five_prime_UTR | 45.0% | |
| AGTGTTTCCCTCCCACTCAA+AGG | - | chr1_4:69691612-69691631 | Msa0181470:three_prime_UTR | 50.0% | |
| GTGTTTCCCTCCCACTCAAA+GGG | - | chr1_4:69691613-69691632 | Msa0181470:three_prime_UTR | 50.0% | |
| TGTTTCCCTCCCACTCAAAG+GGG | - | chr1_4:69691614-69691633 | Msa0181470:three_prime_UTR | 50.0% | |
| ! | TGTGGTGGAGACATTGAGAG+AGG | + | chr1_4:69691858-69691877 | None:intergenic | 50.0% |
| ! | AAGAAACGGAGAGTGTGTGG+TGG | + | chr1_4:69691873-69691892 | None:intergenic | 50.0% |
| GAACCTCATTGAGGTCAGAG+TGG | + | chr1_4:69691903-69691922 | None:intergenic | 50.0% | |
| ACGAGGAGAGAACCTCATTG+AGG | + | chr1_4:69691912-69691931 | None:intergenic | 50.0% | |
| GTGCGTGTCTGGTATGACAA+TGG | - | chr1_4:69692588-69692607 | Msa0181470:intron | 50.0% | |
| TGAGAGAGATATGGGGAGAG+TGG | - | chr1_4:69692738-69692757 | Msa0181470:intron | 50.0% | |
| GAGAGAGATATGGGGAGAGT+GGG | - | chr1_4:69692739-69692758 | Msa0181470:intron | 50.0% | |
| ! | AGATATGGGGAGAGTGGGTT+GGG | - | chr1_4:69692744-69692763 | Msa0181470:intron | 50.0% |
| ATGGGTGTGGTGACTCAAAG+TGG | - | chr1_4:69692809-69692828 | Msa0181470:intron | 50.0% | |
| TTTGATGTCTCGCCACCAAC+TGG | + | chr1_4:69692913-69692932 | None:intergenic | 50.0% | |
| TGACGATGTTGAGTGAGCAG+GGG | - | chr1_4:69693188-69693207 | Msa0181470:intron | 50.0% | |
| TTGAGTGAGCAGGGGATCAA+TGG | - | chr1_4:69693196-69693215 | Msa0181470:intron | 50.0% | |
| TATCGTGGGTCTGGAGGAAT+GGG | - | chr1_4:69693450-69693469 | Msa0181470:intron | 50.0% | |
| GGAAGTGGGTGGCATTTAAG+TGG | - | chr1_4:69693525-69693544 | Msa0181470:intron | 50.0% | |
| GATATGTGGCTTCCGCTATC+CGG | - | chr1_4:69694245-69694264 | Msa0181470:intron | 50.0% | |
| ! | ATCTGAGACTGCTGCTGATG+CGG | - | chr1_4:69694486-69694505 | Msa0181470:intron | 50.0% |
| ! | GGAGCTTTTGCAGAGAGAAC+TGG | - | chr1_4:69694513-69694532 | Msa0181470:intron | 50.0% |
| CTCATTGAGGTCAGAGTGGC+TGG | + | chr1_4:69691899-69691918 | None:intergenic | 55.0% | |
| CAGCCACTCTGACCTCAATG+AGG | - | chr1_4:69691897-69691916 | Msa0181470:intron | 55.0% | |
| GAGGTTCTCTCCTCGTTCCA+AGG | - | chr1_4:69691916-69691935 | Msa0181470:intron | 55.0% | |
| GGAAGTAGGTTGTGCGTGTC+TGG | - | chr1_4:69692577-69692596 | Msa0181470:intron | 55.0% | |
| GAGATATGGGGAGAGTGGGT+TGG | - | chr1_4:69692743-69692762 | Msa0181470:intron | 55.0% | |
| TTTGTGCGCAAAGGCGGTCA+TGG | - | chr1_4:69692842-69692861 | Msa0181470:intron | 55.0% | |
| AAGGCAAGATGGAGTGCGTG+TGG | - | chr1_4:69692875-69692894 | Msa0181470:CDS | 55.0% | |
| CAAGATGGAGTGCGTGTGGT+TGG | - | chr1_4:69692879-69692898 | Msa0181470:CDS | 55.0% | |
| GTGGCGAGACATCAAAGCGA+TGG | - | chr1_4:69692917-69692936 | Msa0181470:CDS | 55.0% | |
| CACGGGAATGGAAATGCAGC+TGG | - | chr1_4:69693130-69693149 | Msa0181470:intron | 55.0% | |
| GCAGGGGATCAATGGAGATG+TGG | - | chr1_4:69693204-69693223 | Msa0181470:intron | 55.0% | |
| CAGTTGTATCGTGGGTCTGG+AGG | - | chr1_4:69693444-69693463 | Msa0181470:intron | 55.0% | |
| GTATCGTGGGTCTGGAGGAA+TGG | - | chr1_4:69693449-69693468 | Msa0181470:intron | 55.0% | |
| ! | TGGAGGTGGTGGTGCACAAC+AGG | - | chr1_4:69693577-69693596 | Msa0181470:intron | 60.0% |
| AGGCAGAGCTCAACAGCTGG+GGG | + | chr1_4:69693810-69693829 | None:intergenic | 60.0% | |
| GAGGCAGAGCTCAACAGCTG+GGG | + | chr1_4:69693811-69693830 | None:intergenic | 60.0% | |
| GGAGGCAGAGCTCAACAGCT+GGG | + | chr1_4:69693812-69693831 | None:intergenic | 60.0% | |
| TGGAGGCAGAGCTCAACAGC+TGG | + | chr1_4:69693813-69693832 | None:intergenic | 60.0% | |
| GACTGCTGCTGATGCGGATC+TGG | - | chr1_4:69694492-69694511 | Msa0181470:intron | 60.0% | |
| GCACAACAGGACGCAGACCG+TGG | - | chr1_4:69693590-69693609 | Msa0181470:intron | 65.0% | |
| GGCAGAGCTCAACAGCTGGG+GGG | + | chr1_4:69693809-69693828 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69691585 | 69695843 | 69691585 | ID=Msa0181470;Name=Msa0181470 |
| chr1_4 | mRNA | 69691585 | 69695843 | 69691585 | ID=Msa0181470-mRNA-1;Parent=Msa0181470;Name=Msa0181470-mRNA-1;_AED=0.10;_eAED=0.10;_QI=163|0.33|0.75|1|0.66|1|4|221|171 |
| chr1_4 | exon | 69691585 | 69691912 | 69691585 | ID=Msa0181470-mRNA-1:exon:23238;Parent=Msa0181470-mRNA-1 |
| chr1_4 | exon | 69692035 | 69692108 | 69692035 | ID=Msa0181470-mRNA-1:exon:23237;Parent=Msa0181470-mRNA-1 |
| chr1_4 | exon | 69692856 | 69693000 | 69692856 | ID=Msa0181470-mRNA-1:exon:23236;Parent=Msa0181470-mRNA-1 |
| chr1_4 | exon | 69695491 | 69695843 | 69695491 | ID=Msa0181470-mRNA-1:exon:23235;Parent=Msa0181470-mRNA-1 |
| chr1_4 | five_prime_UTR | 69695681 | 69695843 | 69695681 | ID=Msa0181470-mRNA-1:five_prime_utr;Parent=Msa0181470-mRNA-1 |
| chr1_4 | CDS | 69695491 | 69695680 | 69695491 | ID=Msa0181470-mRNA-1:cds;Parent=Msa0181470-mRNA-1 |
| chr1_4 | CDS | 69692856 | 69693000 | 69692856 | ID=Msa0181470-mRNA-1:cds;Parent=Msa0181470-mRNA-1 |
| chr1_4 | CDS | 69692035 | 69692108 | 69692035 | ID=Msa0181470-mRNA-1:cds;Parent=Msa0181470-mRNA-1 |
| chr1_4 | CDS | 69691806 | 69691912 | 69691806 | ID=Msa0181470-mRNA-1:cds;Parent=Msa0181470-mRNA-1 |
| chr1_4 | three_prime_UTR | 69691585 | 69691805 | 69691585 | ID=Msa0181470-mRNA-1:three_prime_utr;Parent=Msa0181470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
