Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400190 | GAU46537.1 | 66.981 | 106 | 34 | 1 | 7 | 111 | 1 | 106 | 6.74e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400190 | A0A2Z6PM71 | 66.981 | 106 | 34 | 1 | 7 | 111 | 1 | 106 | 3.22e-41 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012040 | Msa1400190 | 0.810874 | 9.277831e-51 | -8.615850e-47 |
| Msa0028660 | Msa1400190 | 0.801993 | 6.926099e-49 | -8.615850e-47 |
| Msa0033980 | Msa1400190 | 0.922522 | 8.818220e-89 | -8.615850e-47 |
| Msa0040450 | Msa1400190 | 0.821120 | 4.779705e-53 | -8.615850e-47 |
| Msa0044540 | Msa1400190 | -0.824697 | 7.015161e-54 | -8.615850e-47 |
| Msa0051770 | Msa1400190 | 0.821497 | 3.912351e-53 | -8.615850e-47 |
| Msa0052770 | Msa1400190 | 0.806952 | 6.405153e-50 | -8.615850e-47 |
| Msa0081930 | Msa1400190 | 0.936703 | 1.136505e-97 | -8.615850e-47 |
| Msa0086650 | Msa1400190 | 0.800024 | 1.749849e-48 | -8.615850e-47 |
| Msa1371430 | Msa1400190 | 0.804045 | 2.608459e-49 | -8.615850e-47 |
| Msa1400190 | Msa1424450 | 0.800461 | 1.426065e-48 | -8.615850e-47 |
| Msa1400190 | Msa1430680 | 0.803410 | 3.533610e-49 | -8.615850e-47 |
| Msa1400190 | Msa1435370 | 0.811054 | 8.481268e-51 | -8.615850e-47 |
| Msa1400190 | Msa1440910 | 0.804618 | 1.981111e-49 | -8.615850e-47 |
| Msa1400190 | Msa1452240 | 0.809671 | 1.686365e-50 | -8.615850e-47 |
| Msa1400190 | Msa1463670 | 0.822056 | 2.904508e-53 | -8.615850e-47 |
| Msa0607540 | Msa1400190 | 0.800630 | 1.317171e-48 | -8.615850e-47 |
| Msa0610430 | Msa1400190 | 0.829259 | 5.689318e-55 | -8.615850e-47 |
| Msa0621590 | Msa1400190 | 0.802964 | 4.370304e-49 | -8.615850e-47 |
| Msa0623080 | Msa1400190 | 0.800761 | 1.238349e-48 | -8.615850e-47 |
| Msa0633840 | Msa1400190 | 0.820988 | 5.128109e-53 | -8.615850e-47 |
| Msa0657970 | Msa1400190 | 0.813455 | 2.537747e-51 | -8.615850e-47 |
| Msa0661190 | Msa1400190 | -0.815333 | 9.754576e-52 | -8.615850e-47 |
| Msa0692830 | Msa1400190 | 0.803944 | 2.737672e-49 | -8.615850e-47 |
| Msa0692950 | Msa1400190 | 0.811009 | 8.674747e-51 | -8.615850e-47 |
| Msa0711780 | Msa1400190 | 0.803082 | 4.130446e-49 | -8.615850e-47 |
| Msa0716840 | Msa1400190 | 0.815248 | 1.018735e-51 | -8.615850e-47 |
| Msa0745790 | Msa1400190 | 0.811083 | 8.359235e-51 | -8.615850e-47 |
| Msa0770200 | Msa1400190 | 0.815243 | 1.021573e-51 | -8.615850e-47 |
| Msa0773840 | Msa1400190 | 0.802515 | 5.407513e-49 | -8.615850e-47 |
| Msa0794670 | Msa1400190 | 0.816091 | 6.612133e-52 | -8.615850e-47 |
| Msa0796700 | Msa1400190 | 0.819760 | 9.806712e-53 | -8.615850e-47 |
| Msa0804230 | Msa1400190 | 0.816427 | 5.562013e-52 | -8.615850e-47 |
| Msa0808270 | Msa1400190 | 0.812142 | 4.918909e-51 | -8.615850e-47 |
| Msa0816700 | Msa1400190 | 0.810586 | 1.070979e-50 | -8.615850e-47 |
| Msa0827780 | Msa1400190 | 0.808325 | 3.274086e-50 | -8.615850e-47 |
| Msa0121590 | Msa1400190 | 0.805322 | 1.411963e-49 | -8.615850e-47 |
| Msa0128020 | Msa1400190 | 0.960772 | 6.159872e-119 | -8.615850e-47 |
| Msa0136070 | Msa1400190 | 0.804095 | 2.546206e-49 | -8.615850e-47 |
| Msa0136100 | Msa1400190 | 0.802036 | 6.786106e-49 | -8.615850e-47 |
| Msa0150820 | Msa1400190 | 0.806300 | 8.795125e-50 | -8.615850e-47 |
| Msa0160550 | Msa1400190 | 0.807879 | 4.073742e-50 | -8.615850e-47 |
| Msa0173990 | Msa1400190 | 0.805786 | 1.128187e-49 | -8.615850e-47 |
| Msa0181470 | Msa1400190 | 0.803535 | 3.328589e-49 | -8.615850e-47 |
| Msa0184960 | Msa1400190 | 0.806824 | 6.820043e-50 | -8.615850e-47 |
| Msa0192510 | Msa1400190 | 0.802041 | 6.772678e-49 | -8.615850e-47 |
| Msa0197660 | Msa1400190 | 0.804426 | 2.172719e-49 | -8.615850e-47 |
| Msa0220580 | Msa1400190 | 0.810491 | 1.122946e-50 | -8.615850e-47 |
| Msa0222890 | Msa1400190 | 0.803204 | 3.896643e-49 | -8.615850e-47 |
| Msa1240180 | Msa1400190 | 0.808119 | 3.621960e-50 | -8.615850e-47 |
| Msa1288420 | Msa1400190 | 0.801271 | 9.742846e-49 | -8.615850e-47 |
| Msa1293280 | Msa1400190 | 0.808230 | 3.429978e-50 | -8.615850e-47 |
| Msa1320620 | Msa1400190 | 0.808438 | 3.096813e-50 | -8.615850e-47 |
| Msa1328700 | Msa1400190 | 0.803649 | 3.152603e-49 | -8.615850e-47 |
| Msa1333410 | Msa1400190 | 0.825292 | 5.076281e-54 | -8.615850e-47 |
| Msa1340260 | Msa1400190 | 0.800326 | 1.519169e-48 | -8.615850e-47 |
| Msa1340270 | Msa1400190 | 0.810419 | 1.163466e-50 | -8.615850e-47 |
| Msa0383800 | Msa1400190 | 0.816094 | 6.602131e-52 | -8.615850e-47 |
| Msa0385580 | Msa1400190 | 0.808637 | 2.808636e-50 | -8.615850e-47 |
| Msa0397750 | Msa1400190 | 0.811163 | 8.033369e-51 | -8.615850e-47 |
| Msa0434180 | Msa1400190 | 0.813048 | 3.116898e-51 | -8.615850e-47 |
| Msa0446020 | Msa1400190 | 0.800576 | 1.351063e-48 | -8.615850e-47 |
| Msa0467060 | Msa1400190 | 0.807426 | 5.084432e-50 | -8.615850e-47 |
| Msa1014540 | Msa1400190 | 0.803011 | 4.272044e-49 | -8.615850e-47 |
| Msa1061680 | Msa1400190 | 0.837151 | 6.157015e-57 | -8.615850e-47 |
| Msa1082500 | Msa1400190 | 0.818046 | 2.404132e-52 | -8.615850e-47 |
| Msa0239800 | Msa1400190 | 0.804868 | 1.756736e-49 | -8.615850e-47 |
| Msa0260680 | Msa1400190 | 0.817504 | 3.186347e-52 | -8.615850e-47 |
| Msa0265380 | Msa1400190 | 0.819761 | 9.802042e-53 | -8.615850e-47 |
| Msa0279220 | Msa1400190 | 0.803008 | 4.279406e-49 | -8.615850e-47 |
| Msa0280090 | Msa1400190 | 0.818266 | 2.144573e-52 | -8.615850e-47 |
| Msa0303360 | Msa1400190 | 0.811119 | 8.211762e-51 | -8.615850e-47 |
| Msa0309770 | Msa1400190 | 0.828302 | 9.696238e-55 | -8.615850e-47 |
| Msa0317510 | Msa1400190 | 0.802252 | 6.127224e-49 | -8.615850e-47 |
| Msa0318980 | Msa1400190 | 0.807537 | 4.817120e-50 | -8.615850e-47 |
| Msa0342360 | Msa1400190 | 0.802034 | 6.794223e-49 | -8.615850e-47 |
| Msa1172400 | Msa1400190 | 0.812875 | 3.402472e-51 | -8.615850e-47 |
| Msa1173140 | Msa1400190 | 0.806527 | 7.877434e-50 | -8.615850e-47 |
| Msa1199560 | Msa1400190 | 0.801500 | 8.743079e-49 | -8.615850e-47 |
| Msa1204090 | Msa1400190 | 0.804144 | 2.486910e-49 | -8.615850e-47 |
| Msa1205130 | Msa1400190 | 0.802860 | 4.591876e-49 | -8.615850e-47 |
| Msa0484780 | Msa1400190 | 0.813516 | 2.461031e-51 | -8.615850e-47 |
| Msa0593650 | Msa1400190 | 0.801457 | 8.921612e-49 | -8.615850e-47 |
| Msa0876200 | Msa1400190 | 0.811458 | 6.931789e-51 | -8.615850e-47 |
| Msa0878500 | Msa1400190 | 0.809639 | 1.712834e-50 | -8.615850e-47 |
| Msa0935670 | Msa1400190 | 0.829548 | 4.839219e-55 | -8.615850e-47 |
| Msa0944190 | Msa1400190 | 0.818013 | 2.446116e-52 | -8.615850e-47 |
| Msa0945970 | Msa1400190 | 0.801662 | 8.098921e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400190 | MtrunA17_Chr8g0345501 | 65.169 | 89 | 31 | 0 | 24 | 112 | 408 | 496 | 7.13e-34 | 123 |
| Msa1400190 | MtrunA17_Chr2g0313001 | 72.500 | 40 | 11 | 0 | 7 | 46 | 1 | 40 | 2.43e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTATCTCGAGCCAAATT+TGG | 0.138676 | tig0022428:-10713 | None:intergenic |
| TTACCTCTTTATCCCAAATT+TGG | 0.184345 | tig0022428:+10700 | Msa1400190:three_prime_UTR |
| CCATCACCATCTGGAATTAT+TGG | 0.275118 | tig0022428:-9571 | None:intergenic |
| AAGAAATTGCTCACATTATA+TGG | 0.286562 | tig0022428:+10108 | Msa1400190:CDS |
| TGATTTCTTTGACTCATTCA+TGG | 0.333269 | tig0022428:+10187 | Msa1400190:CDS |
| CCGTCATGGAAGCAATTATC+AGG | 0.356730 | tig0022428:+10152 | Msa1400190:CDS |
| AACTATCTCGAGCCAAATTT+GGG | 0.363047 | tig0022428:-10712 | None:intergenic |
| GTAGATTGAGTCAAAGTTGA+AGG | 0.423072 | tig0022428:+10412 | Msa1400190:CDS |
| ACTTGTCATGATGCATGTTA+TGG | 0.428964 | tig0022428:-10510 | None:intergenic |
| AATGTGTACATTTCAAGTTA+TGG | 0.444448 | tig0022428:+9489 | Msa1400190:exon |
| CAAACTCACCCATCACCATC+TGG | 0.453372 | tig0022428:-9580 | None:intergenic |
| CTCAGTTGATGCAAGAAGTT+CGG | 0.458850 | tig0022428:+10385 | Msa1400190:CDS |
| TACAAGGCTTAAGCAACAAT+TGG | 0.471347 | tig0022428:+10442 | Msa1400190:three_prime_UTR |
| TACATGGCAACCAGAGCATA+AGG | 0.485592 | tig0022428:+10317 | Msa1400190:CDS |
| CTAACATGGCTAGCTGAAGA+TGG | 0.497267 | tig0022428:-9523 | None:intergenic |
| TGCACATAGTAGTTCAGTTG+TGG | 0.523431 | tig0022428:+9446 | Msa1400190:five_prime_UTR |
| CCAATAATTCCAGATGGTGA+TGG | 0.531511 | tig0022428:+9571 | Msa1400190:CDS |
| GAGCCAAATTTGGGATAAAG+AGG | 0.548288 | tig0022428:-10703 | None:intergenic |
| CAATAATTCCAGATGGTGAT+GGG | 0.552654 | tig0022428:+9572 | Msa1400190:CDS |
| CAACGGTGTCTCTACTAACA+TGG | 0.557176 | tig0022428:-9537 | None:intergenic |
| CCTGATAATTGCTTCCATGA+CGG | 0.572248 | tig0022428:-10152 | None:intergenic |
| CATAGTAGTTCAGTTGTGGT+TGG | 0.585520 | tig0022428:+9450 | Msa1400190:five_prime_UTR |
| TAGAAGAGGGAAAACCGTCA+TGG | 0.601838 | tig0022428:+10138 | Msa1400190:CDS |
| TATATGGTCTCAATTAGAAG+AGG | 0.602911 | tig0022428:+10124 | Msa1400190:CDS |
| TTTCTTTAACTACCAATGTG+TGG | 0.607987 | tig0022428:-10091 | None:intergenic |
| AAAATACCAATAATTCCAGA+TGG | 0.610541 | tig0022428:+9565 | Msa1400190:CDS |
| AGTTGAAGGAGGCAACTACA+AGG | 0.610652 | tig0022428:+10426 | Msa1400190:exon |
| ATATGGTCTCAATTAGAAGA+GGG | 0.627134 | tig0022428:+10125 | Msa1400190:CDS |
| CTTGAAATGTACACATTGCG+AGG | 0.634227 | tig0022428:-9483 | None:intergenic |
| CAGGTTTGATCACCACACAT+TGG | 0.634316 | tig0022428:+10079 | Msa1400190:intron |
| GATTGAGTCAAAGTTGAAGG+AGG | 0.637853 | tig0022428:+10415 | Msa1400190:exon |
| ATGAGTCAAAGAAATCATCT+CGG | 0.652827 | tig0022428:-10181 | None:intergenic |
| CATGTTAGTAGAGACACCGT+TGG | 0.707519 | tig0022428:+9538 | Msa1400190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAAATAATCATTATTATAT+GGG | - | tig0022428:9611-9630 | None:intergenic | 15.0% |
| !! | TTATTTGGCTAATATAAATA+TGG | + | tig0022428:9623-9642 | Msa1400190:intron | 15.0% |
| !!! | ATTTTGAATTAATATCTCTA+AGG | + | tig0022428:9938-9957 | Msa1400190:intron | 15.0% |
| !! | CCAAATAATCATTATTATAT+GGG | - | tig0022428:9611-9630 | None:intergenic | 15.0% |
| !! | TTATTTGGCTAATATAAATA+TGG | + | tig0022428:9623-9642 | Msa1400190:intron | 15.0% |
| !!! | ATTTTGAATTAATATCTCTA+AGG | + | tig0022428:9938-9957 | Msa1400190:intron | 15.0% |
| !! | CCCATATAATAATGATTATT+TGG | + | tig0022428:9608-9627 | Msa1400190:intron | 20.0% |
| !! | GCCAAATAATCATTATTATA+TGG | - | tig0022428:9612-9631 | None:intergenic | 20.0% |
| !! | TATTACAGAAAAAGTTTACA+TGG | + | tig0022428:10301-10320 | Msa1400190:intron | 20.0% |
| !! | CCCATATAATAATGATTATT+TGG | + | tig0022428:9608-9627 | Msa1400190:intron | 20.0% |
| !! | GCCAAATAATCATTATTATA+TGG | - | tig0022428:9612-9631 | None:intergenic | 20.0% |
| !! | TATTACAGAAAAAGTTTACA+TGG | + | tig0022428:10301-10320 | Msa1400190:intron | 20.0% |
| !!! | AATGTGTACATTTCAAGTTA+TGG | + | tig0022428:9489-9508 | Msa1400190:exon | 25.0% |
| !!! | TATTGGTATTTTAGTACCAA+CGG | - | tig0022428:9557-9576 | None:intergenic | 25.0% |
| ! | AAAATACCAATAATTCCAGA+TGG | + | tig0022428:9565-9584 | Msa1400190:CDS | 25.0% |
| !! | TTGTGGTATTATGATTTTAG+TGG | + | tig0022428:9706-9725 | Msa1400190:intron | 25.0% |
| !! | TTTTCGTGTACATTATATTC+TGG | + | tig0022428:9755-9774 | Msa1400190:intron | 25.0% |
| !!! | AATTAATATCTCTAAGGCTT+TGG | + | tig0022428:9944-9963 | Msa1400190:intron | 25.0% |
| !!! | GTTTTTTCCTGAGAAAATAT+TGG | + | tig0022428:9982-10001 | Msa1400190:intron | 25.0% |
| !!! | TTGTTTGAAACACATTTTTC+AGG | + | tig0022428:10060-10079 | Msa1400190:intron | 25.0% |
| ! | AAGAAATTGCTCACATTATA+TGG | + | tig0022428:10108-10127 | Msa1400190:CDS | 25.0% |
| !!! | TTACTTAATCTGTTCTAAAG+AGG | - | tig0022428:10251-10270 | None:intergenic | 25.0% |
| !!! | TGCGAAAAAACTTTGAAATA+AGG | + | tig0022428:10346-10365 | Msa1400190:CDS | 25.0% |
| !!! | GCGAAAAAACTTTGAAATAA+GGG | + | tig0022428:10347-10366 | Msa1400190:CDS | 25.0% |
| !!! | CGAAAAAACTTTGAAATAAG+GGG | + | tig0022428:10348-10367 | Msa1400190:CDS | 25.0% |
| ! | AGCATATGCACAAAAAAAAA+TGG | - | tig0022428:10667-10686 | None:intergenic | 25.0% |
| !!! | TTTTGTGCATATGCTATTTT+TGG | + | tig0022428:10672-10691 | Msa1400190:three_prime_UTR | 25.0% |
| !!! | AATGTGTACATTTCAAGTTA+TGG | + | tig0022428:9489-9508 | Msa1400190:exon | 25.0% |
| !!! | TATTGGTATTTTAGTACCAA+CGG | - | tig0022428:9557-9576 | None:intergenic | 25.0% |
| ! | AAAATACCAATAATTCCAGA+TGG | + | tig0022428:9565-9584 | Msa1400190:CDS | 25.0% |
| !! | TTGTGGTATTATGATTTTAG+TGG | + | tig0022428:9706-9725 | Msa1400190:intron | 25.0% |
| !! | TTTTCGTGTACATTATATTC+TGG | + | tig0022428:9755-9774 | Msa1400190:intron | 25.0% |
| !!! | AATTAATATCTCTAAGGCTT+TGG | + | tig0022428:9944-9963 | Msa1400190:intron | 25.0% |
| !!! | GTTTTTTCCTGAGAAAATAT+TGG | + | tig0022428:9982-10001 | Msa1400190:intron | 25.0% |
| !!! | TTGTTTGAAACACATTTTTC+AGG | + | tig0022428:10060-10079 | Msa1400190:intron | 25.0% |
| ! | AAGAAATTGCTCACATTATA+TGG | + | tig0022428:10108-10127 | Msa1400190:CDS | 25.0% |
| !!! | TTACTTAATCTGTTCTAAAG+AGG | - | tig0022428:10251-10270 | None:intergenic | 25.0% |
| !!! | TGCGAAAAAACTTTGAAATA+AGG | + | tig0022428:10346-10365 | Msa1400190:CDS | 25.0% |
| !!! | GCGAAAAAACTTTGAAATAA+GGG | + | tig0022428:10347-10366 | Msa1400190:CDS | 25.0% |
| !!! | CGAAAAAACTTTGAAATAAG+GGG | + | tig0022428:10348-10367 | Msa1400190:CDS | 25.0% |
| ! | AGCATATGCACAAAAAAAAA+TGG | - | tig0022428:10667-10686 | None:intergenic | 25.0% |
| !!! | TTTTGTGCATATGCTATTTT+TGG | + | tig0022428:10672-10691 | Msa1400190:three_prime_UTR | 25.0% |
| ! | GATTCTGTTAACTTTCCTTT+TGG | + | tig0022428:9655-9674 | Msa1400190:intron | 30.0% |
| ! | TTTTCCTGAGAAAATATTGG+TGG | + | tig0022428:9985-10004 | Msa1400190:intron | 30.0% |
| CAAGTAAAGTCTTAACTCAA+AGG | - | tig0022428:10043-10062 | None:intergenic | 30.0% | |
| TTTCTTTAACTACCAATGTG+TGG | - | tig0022428:10094-10113 | None:intergenic | 30.0% | |
| TATATGGTCTCAATTAGAAG+AGG | + | tig0022428:10124-10143 | Msa1400190:CDS | 30.0% | |
| ATATGGTCTCAATTAGAAGA+GGG | + | tig0022428:10125-10144 | Msa1400190:CDS | 30.0% | |
| ATGAGTCAAAGAAATCATCT+CGG | - | tig0022428:10184-10203 | None:intergenic | 30.0% | |
| TGATTTCTTTGACTCATTCA+TGG | + | tig0022428:10187-10206 | Msa1400190:CDS | 30.0% | |
| ! | GATTCTGTTAACTTTCCTTT+TGG | + | tig0022428:9655-9674 | Msa1400190:intron | 30.0% |
| ! | TTTTCCTGAGAAAATATTGG+TGG | + | tig0022428:9985-10004 | Msa1400190:intron | 30.0% |
| CAAGTAAAGTCTTAACTCAA+AGG | - | tig0022428:10043-10062 | None:intergenic | 30.0% | |
| TTTCTTTAACTACCAATGTG+TGG | - | tig0022428:10094-10113 | None:intergenic | 30.0% | |
| TATATGGTCTCAATTAGAAG+AGG | + | tig0022428:10124-10143 | Msa1400190:CDS | 30.0% | |
| ATATGGTCTCAATTAGAAGA+GGG | + | tig0022428:10125-10144 | Msa1400190:CDS | 30.0% | |
| ATGAGTCAAAGAAATCATCT+CGG | - | tig0022428:10184-10203 | None:intergenic | 30.0% | |
| TGATTTCTTTGACTCATTCA+TGG | + | tig0022428:10187-10206 | Msa1400190:CDS | 30.0% | |
| CAATAATTCCAGATGGTGAT+GGG | + | tig0022428:9572-9591 | Msa1400190:CDS | 35.0% | |
| ! | GCATTGTTACTTGATCCAAA+AGG | - | tig0022428:9673-9692 | None:intergenic | 35.0% |
| GTTGCTGAACATGCTATATA+TGG | + | tig0022428:9841-9860 | Msa1400190:intron | 35.0% | |
| GTAGATTGAGTCAAAGTTGA+AGG | + | tig0022428:10412-10431 | Msa1400190:CDS | 35.0% | |
| TACAAGGCTTAAGCAACAAT+TGG | + | tig0022428:10442-10461 | Msa1400190:three_prime_UTR | 35.0% | |
| ACTTGTCATGATGCATGTTA+TGG | - | tig0022428:10513-10532 | None:intergenic | 35.0% | |
| CAATAATTCCAGATGGTGAT+GGG | + | tig0022428:9572-9591 | Msa1400190:CDS | 35.0% | |
| ! | GCATTGTTACTTGATCCAAA+AGG | - | tig0022428:9673-9692 | None:intergenic | 35.0% |
| GTTGCTGAACATGCTATATA+TGG | + | tig0022428:9841-9860 | Msa1400190:intron | 35.0% | |
| GTAGATTGAGTCAAAGTTGA+AGG | + | tig0022428:10412-10431 | Msa1400190:CDS | 35.0% | |
| TACAAGGCTTAAGCAACAAT+TGG | + | tig0022428:10442-10461 | Msa1400190:three_prime_UTR | 35.0% | |
| ACTTGTCATGATGCATGTTA+TGG | - | tig0022428:10513-10532 | None:intergenic | 35.0% | |
| TGCACATAGTAGTTCAGTTG+TGG | + | tig0022428:9446-9465 | Msa1400190:five_prime_UTR | 40.0% | |
| CATAGTAGTTCAGTTGTGGT+TGG | + | tig0022428:9450-9469 | Msa1400190:five_prime_UTR | 40.0% | |
| CTTGAAATGTACACATTGCG+AGG | - | tig0022428:9486-9505 | None:intergenic | 40.0% | |
| ! | CCATCACCATCTGGAATTAT+TGG | - | tig0022428:9574-9593 | None:intergenic | 40.0% |
| CCAATAATTCCAGATGGTGA+TGG | + | tig0022428:9571-9590 | Msa1400190:CDS | 40.0% | |
| !! | ATCTCTAAGGCTTTGGAACA+TGG | + | tig0022428:9951-9970 | Msa1400190:intron | 40.0% |
| ! | TGCACCACCAATATTTTCTC+AGG | - | tig0022428:9992-10011 | None:intergenic | 40.0% |
| GTGCAAGTAGTTAGTTGTGT+TGG | + | tig0022428:10007-10026 | Msa1400190:intron | 40.0% | |
| CCTGATAATTGCTTCCATGA+CGG | - | tig0022428:10155-10174 | None:intergenic | 40.0% | |
| ! | CTCAGTTGATGCAAGAAGTT+CGG | + | tig0022428:10385-10404 | Msa1400190:CDS | 40.0% |
| GATTGAGTCAAAGTTGAAGG+AGG | + | tig0022428:10415-10434 | Msa1400190:exon | 40.0% | |
| TGCACATAGTAGTTCAGTTG+TGG | + | tig0022428:9446-9465 | Msa1400190:five_prime_UTR | 40.0% | |
| CATAGTAGTTCAGTTGTGGT+TGG | + | tig0022428:9450-9469 | Msa1400190:five_prime_UTR | 40.0% | |
| CTTGAAATGTACACATTGCG+AGG | - | tig0022428:9486-9505 | None:intergenic | 40.0% | |
| ! | CCATCACCATCTGGAATTAT+TGG | - | tig0022428:9574-9593 | None:intergenic | 40.0% |
| CCAATAATTCCAGATGGTGA+TGG | + | tig0022428:9571-9590 | Msa1400190:CDS | 40.0% | |
| !! | ATCTCTAAGGCTTTGGAACA+TGG | + | tig0022428:9951-9970 | Msa1400190:intron | 40.0% |
| ! | TGCACCACCAATATTTTCTC+AGG | - | tig0022428:9992-10011 | None:intergenic | 40.0% |
| GTGCAAGTAGTTAGTTGTGT+TGG | + | tig0022428:10007-10026 | Msa1400190:intron | 40.0% | |
| CCTGATAATTGCTTCCATGA+CGG | - | tig0022428:10155-10174 | None:intergenic | 40.0% | |
| ! | CTCAGTTGATGCAAGAAGTT+CGG | + | tig0022428:10385-10404 | Msa1400190:CDS | 40.0% |
| GATTGAGTCAAAGTTGAAGG+AGG | + | tig0022428:10415-10434 | Msa1400190:exon | 40.0% | |
| ! | CTAACATGGCTAGCTGAAGA+TGG | - | tig0022428:9526-9545 | None:intergenic | 45.0% |
| CAACGGTGTCTCTACTAACA+TGG | - | tig0022428:9540-9559 | None:intergenic | 45.0% | |
| CATGTTAGTAGAGACACCGT+TGG | + | tig0022428:9538-9557 | Msa1400190:CDS | 45.0% | |
| ATGCAAGACTGTTGTGCTTG+TGG | + | tig0022428:9689-9708 | Msa1400190:intron | 45.0% | |
| !! | CTAAGGCTTTGGAACATGGT+TGG | + | tig0022428:9955-9974 | Msa1400190:intron | 45.0% |
| CAGGTTTGATCACCACACAT+TGG | + | tig0022428:10079-10098 | Msa1400190:intron | 45.0% | |
| TAGAAGAGGGAAAACCGTCA+TGG | + | tig0022428:10138-10157 | Msa1400190:CDS | 45.0% | |
| CCGTCATGGAAGCAATTATC+AGG | + | tig0022428:10152-10171 | Msa1400190:CDS | 45.0% | |
| TACATGGCAACCAGAGCATA+AGG | + | tig0022428:10317-10336 | Msa1400190:CDS | 45.0% | |
| ! | CGCACTTTTACCTTATGCTC+TGG | - | tig0022428:10330-10349 | None:intergenic | 45.0% |
| AGTTGAAGGAGGCAACTACA+AGG | + | tig0022428:10426-10445 | Msa1400190:exon | 45.0% | |
| ! | CTAACATGGCTAGCTGAAGA+TGG | - | tig0022428:9526-9545 | None:intergenic | 45.0% |
| CAACGGTGTCTCTACTAACA+TGG | - | tig0022428:9540-9559 | None:intergenic | 45.0% | |
| CATGTTAGTAGAGACACCGT+TGG | + | tig0022428:9538-9557 | Msa1400190:CDS | 45.0% | |
| ATGCAAGACTGTTGTGCTTG+TGG | + | tig0022428:9689-9708 | Msa1400190:intron | 45.0% | |
| !! | CTAAGGCTTTGGAACATGGT+TGG | + | tig0022428:9955-9974 | Msa1400190:intron | 45.0% |
| CAGGTTTGATCACCACACAT+TGG | + | tig0022428:10079-10098 | Msa1400190:intron | 45.0% | |
| TAGAAGAGGGAAAACCGTCA+TGG | + | tig0022428:10138-10157 | Msa1400190:CDS | 45.0% | |
| CCGTCATGGAAGCAATTATC+AGG | + | tig0022428:10152-10171 | Msa1400190:CDS | 45.0% | |
| TACATGGCAACCAGAGCATA+AGG | + | tig0022428:10317-10336 | Msa1400190:CDS | 45.0% | |
| ! | CGCACTTTTACCTTATGCTC+TGG | - | tig0022428:10330-10349 | None:intergenic | 45.0% |
| AGTTGAAGGAGGCAACTACA+AGG | + | tig0022428:10426-10445 | Msa1400190:exon | 45.0% | |
| CAAACTCACCCATCACCATC+TGG | - | tig0022428:9583-9602 | None:intergenic | 50.0% | |
| CAAACTCACCCATCACCATC+TGG | - | tig0022428:9583-9602 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022428 | gene | 9384 | 10720 | 9384 | ID=Msa1400190;Name=Msa1400190 |
| tig0022428 | mRNA | 9384 | 10720 | 9384 | ID=Msa1400190-mRNA-1;Parent=Msa1400190;Name=Msa1400190-mRNA-1;_AED=0.28;_eAED=0.28;_QI=106|1|1|1|1|1|3|289|117 |
| tig0022428 | exon | 9384 | 9593 | 9384 | ID=Msa1400190-mRNA-1:exon:17666;Parent=Msa1400190-mRNA-1 |
| tig0022428 | exon | 10082 | 10208 | 10082 | ID=Msa1400190-mRNA-1:exon:17667;Parent=Msa1400190-mRNA-1 |
| tig0022428 | exon | 10309 | 10720 | 10309 | ID=Msa1400190-mRNA-1:exon:17668;Parent=Msa1400190-mRNA-1 |
| tig0022428 | five_prime_UTR | 9384 | 9489 | 9384 | ID=Msa1400190-mRNA-1:five_prime_utr;Parent=Msa1400190-mRNA-1 |
| tig0022428 | CDS | 9490 | 9593 | 9490 | ID=Msa1400190-mRNA-1:cds;Parent=Msa1400190-mRNA-1 |
| tig0022428 | CDS | 10082 | 10208 | 10082 | ID=Msa1400190-mRNA-1:cds;Parent=Msa1400190-mRNA-1 |
| tig0022428 | CDS | 10309 | 10431 | 10309 | ID=Msa1400190-mRNA-1:cds;Parent=Msa1400190-mRNA-1 |
| tig0022428 | three_prime_UTR | 10432 | 10720 | 10432 | ID=Msa1400190-mRNA-1:three_prime_utr;Parent=Msa1400190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
