AlfalfaGEDB | Msa1400190

M. sativa cultivar zhongmu-4 / Msa1400190

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400190	GAU46537.1	66.981	106	34	1	7	111	1	106	6.74e-41	145

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400190	A0A2Z6PM71	66.981	106	34	1	7	111	1	106	3.22e-41	145

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012040	Msa1400190	0.810874	9.277831e-51	-8.615850e-47
Msa0028660	Msa1400190	0.801993	6.926099e-49	-8.615850e-47
Msa0033980	Msa1400190	0.922522	8.818220e-89	-8.615850e-47
Msa0040450	Msa1400190	0.821120	4.779705e-53	-8.615850e-47
Msa0044540	Msa1400190	-0.824697	7.015161e-54	-8.615850e-47
Msa0051770	Msa1400190	0.821497	3.912351e-53	-8.615850e-47
Msa0052770	Msa1400190	0.806952	6.405153e-50	-8.615850e-47
Msa0081930	Msa1400190	0.936703	1.136505e-97	-8.615850e-47
Msa0086650	Msa1400190	0.800024	1.749849e-48	-8.615850e-47
Msa0121590	Msa1400190	0.805322	1.411963e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400190	MtrunA17_Chr8g0345501	65.169	89	31	0	24	112	408	496	7.13e-34	123
Msa1400190	MtrunA17_Chr2g0313001	72.500	40	11	0	7	46	1	40	2.43e-13	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 33 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCAATAATTCCAGA+TGG	0.610541	tig0022428:+9565	Msa1400190:CDS
AACTATCTCGAGCCAAATTT+GGG	0.363047	tig0022428:-10712	None:intergenic
AAGAAATTGCTCACATTATA+TGG	0.286562	tig0022428:+10108	Msa1400190:CDS
AATGTGTACATTTCAAGTTA+TGG	0.444448	tig0022428:+9489	Msa1400190:exon
ACTTGTCATGATGCATGTTA+TGG	0.428964	tig0022428:-10510	None:intergenic
AGTTGAAGGAGGCAACTACA+AGG	0.610652	tig0022428:+10426	Msa1400190:exon
ATATGGTCTCAATTAGAAGA+GGG	0.627134	tig0022428:+10125	Msa1400190:CDS
ATGAGTCAAAGAAATCATCT+CGG	0.652827	tig0022428:-10181	None:intergenic
CAAACTCACCCATCACCATC+TGG	0.453372	tig0022428:-9580	None:intergenic
CAACGGTGTCTCTACTAACA+TGG	0.557176	tig0022428:-9537	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGTAAAGTCTTAACTCAA+AGG	-	tig0022428:10043-10062	None:intergenic	30.0%
TTTCTTTAACTACCAATGTG+TGG	-	tig0022428:10094-10113	None:intergenic	30.0%
TATATGGTCTCAATTAGAAG+AGG	+	tig0022428:10124-10143	Msa1400190:CDS	30.0%
ATATGGTCTCAATTAGAAGA+GGG	+	tig0022428:10125-10144	Msa1400190:CDS	30.0%
ATGAGTCAAAGAAATCATCT+CGG	-	tig0022428:10184-10203	None:intergenic	30.0%
TGATTTCTTTGACTCATTCA+TGG	+	tig0022428:10187-10206	Msa1400190:CDS	30.0%
CAAGTAAAGTCTTAACTCAA+AGG	-	tig0022428:10043-10062	None:intergenic	30.0%
TTTCTTTAACTACCAATGTG+TGG	-	tig0022428:10094-10113	None:intergenic	30.0%
TATATGGTCTCAATTAGAAG+AGG	+	tig0022428:10124-10143	Msa1400190:CDS	30.0%
ATATGGTCTCAATTAGAAGA+GGG	+	tig0022428:10125-10144	Msa1400190:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022428	gene	9384	10720	9384	ID=Msa1400190;Name=Msa1400190
tig0022428	mRNA	9384	10720	9384	ID=Msa1400190-mRNA-1;Parent=Msa1400190;Name=Msa1400190-mRNA-1;_AED=0.28;_eAED=0.28;_QI=106\|1\|1\|1\|1\|1\|3\|289\|117
tig0022428	exon	9384	9593	9384	ID=Msa1400190-mRNA-1:exon:17666;Parent=Msa1400190-mRNA-1
tig0022428	exon	10082	10208	10082	ID=Msa1400190-mRNA-1:exon:17667;Parent=Msa1400190-mRNA-1
tig0022428	exon	10309	10720	10309	ID=Msa1400190-mRNA-1:exon:17668;Parent=Msa1400190-mRNA-1
tig0022428	five_prime_UTR	9384	9489	9384	ID=Msa1400190-mRNA-1:five_prime_utr;Parent=Msa1400190-mRNA-1
tig0022428	CDS	9490	9593	9490	ID=Msa1400190-mRNA-1:cds;Parent=Msa1400190-mRNA-1
tig0022428	CDS	10082	10208	10082	ID=Msa1400190-mRNA-1:cds;Parent=Msa1400190-mRNA-1
tig0022428	CDS	10309	10431	10309	ID=Msa1400190-mRNA-1:cds;Parent=Msa1400190-mRNA-1
tig0022428	three_prime_UTR	10432	10720	10432	ID=Msa1400190-mRNA-1:three_prime_utr;Parent=Msa1400190-mRNA-1

Gene Sequence	>Msa1400190 ATGTGTACATTTCAAGTTATGGTCAATAGAGCTCCATCTTCAGCTAGCCATGTTAGTAGAGACACCGTTGGTACTAAAATACCAATAATTCCAGATGGTGATGGGTTTGATCACCACACATTGGTAGTTAAAGAAATTGCTCACATTATATGGTCTCAATTAGAAGAGGGAAAACCGTCATGGAAGCAATTATCAGGAAATCACCGAGATGATTTCTTTGACTCATTCATGAAAAAGTTTACATGGCAACCAGAGCATAAGGTAAAAGTGCGAAAAAACTTTGAAATAAGGGGTGCAGCTAAGATGTCTCAGTTGATGCAAGAAGTTCGGAAAAGTAGATTGAGTCAAAGTTGA
Protein sequence	>Msa1400190 MCTFQVMVNRAPSSASHVSRDTVGTKIPIIPDGDGFDHHTLVVKEIAHIIWSQLEEGKPSWKQLSGNHRDDFFDSFMKKFTWQPEHKVKVRKNFEIRGAAKMSQLMQEVRKSRLSQS*