AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0827040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827040 MtrunA17_Chr5g0443821 92.464 345 25 1 1 345 31 374 0.0 629
Msa0827040 MtrunA17_Chr8g0358401 42.073 164 90 3 156 319 289 447 6.29e-32 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827040 AT5G54880.1 44.134 358 166 11 6 345 43 384 2.24e-87 269

Find 152 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTCTTTGTCACATATT+TGG 0.144864 5_3:-68006709 Msa0827040:CDS
TTCTACCAGAATTGCTAAAA+TGG 0.152054 5_3:-68007065 Msa0827040:CDS
AGCTAATGAACAATCATAAT+TGG 0.163502 5_3:+68004532 None:intergenic
TCGGCTTTGATTGAAGTTTC+TGG 0.217156 5_3:-68003644 Msa0827040:three_prime_UTR
AATTCAAATTCTGCTGAAAA+AGG 0.225310 5_3:-68006965 Msa0827040:CDS
TGAAGGGCAAATTGGTCTTT+TGG 0.248447 5_3:+68007201 None:intergenic
GAAGCAGCAGACTTGCTAAT+TGG 0.263223 5_3:+68005214 None:intergenic
ATGGTAACATTGACGGAATT+AGG 0.277637 5_3:+68007124 None:intergenic
AACAACTAATATGTCTATTT+CGG 0.291208 5_3:-68004745 Msa0827040:three_prime_UTR
CATAACATTCATGGATTATG+AGG 0.304654 5_3:-68003949 Msa0827040:three_prime_UTR
TCTGGAAAGGCTTATATAAT+CGG 0.324961 5_3:-68003617 Msa0827040:three_prime_UTR
TTCAAAGGAAGCAGTTGAAT+AGG 0.325511 5_3:-68006586 Msa0827040:CDS
GTGAATGAGATGAGCTTATA+TGG 0.325559 5_3:-68006347 Msa0827040:CDS
TTGTATGGGAAGCGGGGTTT+TGG 0.327193 5_3:-68004287 Msa0827040:three_prime_UTR
AGACTTGCTAATTGGGAGTT+TGG 0.328244 5_3:+68005222 None:intergenic
TCTCATCTTTACATCGTCTT+TGG 0.329896 5_3:+68006192 None:intergenic
GATTTGCATTAAGTTGAATA+AGG 0.331950 5_3:+68004802 None:intergenic
AATTATGATTGTTCATTAGC+TGG 0.337922 5_3:-68004530 Msa0827040:three_prime_UTR
CGGCATCTTCCACAATCTTT+CGG 0.338745 5_3:+68003355 None:intergenic
GAGAGTGCTTCACATGCTTC+AGG 0.340669 5_3:+68006632 None:intergenic
GAACATGGGCTAAGGCTAAA+AGG 0.340822 5_3:-68006421 Msa0827040:CDS
GGTGAAGAACTTGATTGTTC+TGG 0.343906 5_3:-68006447 Msa0827040:CDS
TTGGAACATGAAGGGCAAAT+TGG 0.348578 5_3:+68007193 None:intergenic
AGATACTCGGTACTCATTTA+CGG 0.350405 5_3:-68004006 Msa0827040:three_prime_UTR
AGAAGGATTCATAACATTCA+TGG 0.351739 5_3:-68003958 Msa0827040:three_prime_UTR
CAGTCGATGTTTAATATTAA+CGG 0.355123 5_3:+68003335 None:intergenic
TGGTAACATTGACGGAATTA+GGG 0.358231 5_3:+68007125 None:intergenic
TAATAAGAGAGGGTGAAATT+TGG 0.359616 5_3:+68003910 None:intergenic
AAACAATTATTATCATTTAG+TGG 0.365432 5_3:+68004320 None:intergenic
TCAAAGGAAGCAGTTGAATA+GGG 0.369887 5_3:-68006585 Msa0827040:CDS
GAGTATTGTGTTTGCTTTGA+AGG 0.371818 5_3:-68006279 Msa0827040:CDS
AAAATTATGCAAGTTCCTAT+TGG 0.375279 5_3:-68003845 Msa0827040:three_prime_UTR
GATTATGAGGGATTGCATAT+TGG 0.381427 5_3:-68003936 Msa0827040:three_prime_UTR
GAGACAAGTTCGAGTGGGTT+TGG 0.382351 5_3:+68007174 None:intergenic
CAATCATAATTGGGAATCTC+TGG 0.384998 5_3:+68004542 None:intergenic
GATACTCGGTACTCATTTAC+GGG 0.385647 5_3:-68004005 Msa0827040:three_prime_UTR
ATTGAAGTTTCTGGTTTGTC+TGG 0.394369 5_3:-68003635 Msa0827040:three_prime_UTR
CTAATATGTCTATTTCGGTT+TGG 0.395812 5_3:-68004740 Msa0827040:three_prime_UTR
GCATGTGAAGCACTCTCAAA+AGG 0.406586 5_3:-68006626 Msa0827040:CDS
GCAATTCTGGTAGAATTAAG+AGG 0.409188 5_3:+68007073 None:intergenic
AAGCAGCAGACTTGCTAATT+GGG 0.409238 5_3:+68005215 None:intergenic
GATTGGATTGTATGGGAAGC+GGG 0.410281 5_3:-68004294 Msa0827040:three_prime_UTR
CGAAGTTGTGATGATCTAAC+TGG 0.417044 5_3:-68006782 Msa0827040:CDS
AATCGAAGAATCAATTGGTT+TGG 0.418572 5_3:-68003785 Msa0827040:three_prime_UTR
AAGCTCATCAAGACACCAAT+AGG 0.421942 5_3:+68003830 None:intergenic
ATTCTGAGAGATTACAGAAA+TGG 0.421951 5_3:-68003670 Msa0827040:three_prime_UTR
GATGAAGATTTGACTTTGCT+CGG 0.426177 5_3:-68004236 Msa0827040:three_prime_UTR
GAGGACTCGACTTCTATTCC+TGG 0.431334 5_3:+68004206 None:intergenic
GTAAGGATCTACCAAAGAAC+TGG 0.431924 5_3:+68005142 None:intergenic
GCTGGAATTGTGGTGCAAAA+TGG 0.432474 5_3:+68004416 None:intergenic
TGTTTGCTTTGAAGGCAGTT+GGG 0.435412 5_3:-68006271 Msa0827040:CDS
TGGGGAGAAACACAGTGGTT+TGG 0.438263 5_3:-68006252 Msa0827040:CDS
CTGATCATAGGATGAGATAT+TGG 0.439586 5_3:-68004496 Msa0827040:three_prime_UTR
ATTATGATTGTTCATTAGCT+GGG 0.443381 5_3:-68004529 Msa0827040:three_prime_UTR
GTGGACAAATAACCAGCTTT+AGG 0.443746 5_3:+68006308 None:intergenic
GCTAATGAACAATCATAATT+GGG 0.444792 5_3:+68004533 None:intergenic
AGTATCAATATCAATAAAGT+TGG 0.448655 5_3:+68006889 None:intergenic
TAGGAAATCGAAGAATCAAT+TGG 0.453508 5_3:-68003790 Msa0827040:three_prime_UTR
AAAGAAATGAAGAAACTCAT+AGG 0.454105 5_3:-68004596 Msa0827040:three_prime_UTR
TTCTCATGTCTTATATCTGA+AGG 0.456648 5_3:+68003741 None:intergenic
TGACAATTTGAGGCAATCAA+TGG 0.458203 5_3:-68004063 Msa0827040:three_prime_UTR
GAAAAGATGTGCTTCAAAGC+TGG 0.460574 5_3:+68004398 None:intergenic
GATGATCTAACTGGAGGTTA+TGG 0.462533 5_3:-68006773 Msa0827040:CDS
GGCTTCACTTTGTAAAAGAT+AGG 0.466746 5_3:+68003762 None:intergenic
TTTGAGCTTGAGGTTTGTGC+TGG 0.469445 5_3:-68006536 Msa0827040:CDS
AACTAAAACTCAACGGATAA+CGG 0.471061 5_3:+68004851 None:intergenic
TCTACCAGAATTGCTAAAAT+GGG 0.471348 5_3:-68007064 Msa0827040:CDS
AGTTTCTGGTTTGTCTGGAA+AGG 0.472424 5_3:-68003630 Msa0827040:three_prime_UTR
GGATTTATAGCGAAAATCCT+TGG 0.473289 5_3:-68006400 Msa0827040:CDS
TTCAATTGCATTAATAAGAG+AGG 0.478056 5_3:+68003899 None:intergenic
AACGTTAATCTCAATGTCAC+AGG 0.480197 5_3:-68007230 None:intergenic
CTTAAAATGTAGTTCTGTTG+AGG 0.482594 5_3:-68004102 Msa0827040:three_prime_UTR
TGAATTTATCCGAAAGATTG+TGG 0.486982 5_3:-68003364 Msa0827040:three_prime_UTR
GTGTTTGCTTTGAAGGCAGT+TGG 0.487607 5_3:-68006272 Msa0827040:CDS
TGATTGGATTGTATGGGAAG+CGG 0.494377 5_3:-68004295 Msa0827040:three_prime_UTR
TTAATGCAATTGAAGCATCA+AGG 0.496556 5_3:-68003890 Msa0827040:three_prime_UTR
ATTATTGCAAGAGAAAATGT+AGG 0.497144 5_3:+68003278 None:intergenic
AAGCACGGATAGGAAATAGA+AGG 0.503582 5_3:-68003304 Msa0827040:three_prime_UTR
AGCAAACACAATACTCTCAA+TGG 0.504608 5_3:+68006286 None:intergenic
ACTTTGCTCGGAAAACATCC+AGG 0.509422 5_3:-68004224 Msa0827040:three_prime_UTR
CAGTGGTTTGGATAATCTGT+TGG 0.512792 5_3:-68006240 Msa0827040:CDS
TTTCAAATCGATATCTTGTG+TGG 0.518623 5_3:-68004679 Msa0827040:three_prime_UTR
TGATTGTTCTGGATGGAACA+TGG 0.519741 5_3:-68006436 Msa0827040:CDS
ACATTGACGGAATTAGGGAT+TGG 0.526180 5_3:+68007130 None:intergenic
TCTTCGATTTCCTACACTCA+AGG 0.529519 5_3:+68003799 None:intergenic
TTCAAGAGAGTGTTGAAGAA+TGG 0.532586 5_3:+68007105 None:intergenic
AGGTAACCCTTCACATTCAA+AGG 0.533084 5_3:+68004151 None:intergenic
GTTACCTGGTACAATTATAG+AGG 0.535956 5_3:-68004135 Msa0827040:three_prime_UTR
CTGGAAAGGCTTATATAATC+GGG 0.537974 5_3:-68003616 Msa0827040:intron
CGAATCCATCGCAGATCTTG+TGG 0.538512 5_3:-68004780 Msa0827040:three_prime_UTR
TAAGACATGAGAAATAGTTA+TGG 0.538995 5_3:-68003731 Msa0827040:three_prime_UTR
CCCACCTCTATAATTGTACC+AGG 0.539192 5_3:+68004131 None:intergenic
TTTGAATGTGAAGGGTTACC+TGG 0.541109 5_3:-68004149 Msa0827040:three_prime_UTR
TATGATGCTCTTTGTCGAGA+AGG 0.543632 5_3:-68003975 Msa0827040:three_prime_UTR
TTGAAGAATGGTAACATTGA+CGG 0.544600 5_3:+68007117 None:intergenic
GATATTGATACTGATAGTGC+GGG 0.549223 5_3:-68006878 Msa0827040:CDS
TGTATATACGAAGCACGGAT+AGG 0.552896 5_3:-68003314 Msa0827040:three_prime_UTR
CATGTGAAGCACTCTCAAAA+GGG 0.553595 5_3:-68006625 Msa0827040:CDS
TTGACGGAATTAGGGATTGG+AGG 0.554043 5_3:+68007133 None:intergenic
GTTAGTGAATTAGATGCTGT+TGG 0.555693 5_3:-68006476 Msa0827040:CDS
CAAATAGTAAAAGTAATAGC+AGG 0.555900 5_3:+68006746 None:intergenic
ATAACATTCATGGATTATGA+GGG 0.558927 5_3:-68003948 Msa0827040:three_prime_UTR
AATGTAGTTCTGTTGAGGAG+TGG 0.561062 5_3:-68004097 Msa0827040:three_prime_UTR
TTTGCCGCATTTGAAGTTGG+AGG 0.562587 5_3:-68006369 Msa0827040:CDS
ACCTGGTACAATTATAGAGG+TGG 0.566062 5_3:-68004132 Msa0827040:three_prime_UTR
GTTTGCTTTGAAGGCAGTTG+GGG 0.569465 5_3:-68006270 Msa0827040:CDS
TTCAAATCGATATCTTGTGT+GGG 0.571269 5_3:-68004678 Msa0827040:three_prime_UTR
TTTGACCACAAGATCTGCGA+TGG 0.571563 5_3:+68004775 None:intergenic
TCAATTGCATTAATAAGAGA+GGG 0.571937 5_3:+68003900 None:intergenic
ACAAGACAAAATCTTGTCAA+AGG 0.575156 5_3:+68006655 None:intergenic
GAAGAAACTCATAGGACAAG+AGG 0.582645 5_3:-68004588 Msa0827040:three_prime_UTR
CAATTCTGGTAGAATTAAGA+GGG 0.583751 5_3:+68007074 None:intergenic
AAATGGCTCAAATTCACACT+TGG 0.586424 5_3:+68004433 None:intergenic
CACCTCACAGCTAGTGTAGA+CGG 0.587124 5_3:-68005248 Msa0827040:intron
AAGAACTTGATTGTTCTGGA+TGG 0.588745 5_3:-68006443 Msa0827040:CDS
ATTGGATTGTATGGGAAGCG+GGG 0.593038 5_3:-68004293 Msa0827040:three_prime_UTR
TTTATCATAAAACAAATCAA+GGG 0.593120 5_3:+68006916 None:intergenic
GTACGAGGAATTTGAGCTTG+AGG 0.593286 5_3:-68006546 Msa0827040:CDS
TGATATTGATACTGATAGTG+CGG 0.597364 5_3:-68006879 Msa0827040:CDS
TCGTCTTTGGTCACCAACCA+TGG 0.598832 5_3:+68006205 None:intergenic
GAGTGGGTTTGGAACATGAA+GGG 0.601207 5_3:+68007185 None:intergenic
TGCGGCAAAATGTTCAGCCA+AGG 0.601245 5_3:+68006383 None:intergenic
CGAGTGGGTTTGGAACATGA+AGG 0.602634 5_3:+68007184 None:intergenic
AATCAGAAAGTCAATGACTT+CGG 0.603190 5_3:+68005187 None:intergenic
GATGCTGCCTTTGAATGTGA+AGG 0.603986 5_3:-68004158 Msa0827040:three_prime_UTR
TCTGGATGGAACATGGGCTA+AGG 0.604029 5_3:-68006429 Msa0827040:CDS
GATTGTTCTGGATGGAACAT+GGG 0.605034 5_3:-68006435 Msa0827040:CDS
TTGCGAAGATCCTTGAGTGT+AGG 0.608687 5_3:-68003809 Msa0827040:three_prime_UTR
TGAGCTTATATGGTGAAGTG+AGG 0.615027 5_3:-68006337 Msa0827040:CDS
CCTGGTACAATTATAGAGGT+GGG 0.617388 5_3:-68004131 Msa0827040:three_prime_UTR
TTTCAGCAGAATTTGAATTG+GGG 0.620134 5_3:+68006969 None:intergenic
TTCACCTCCAACTTCAAATG+CGG 0.631125 5_3:+68006365 None:intergenic
GAACAGAGACAAGTTCGAGT+GGG 0.632210 5_3:+68007169 None:intergenic
TTATGATTGTTCATTAGCTG+GGG 0.632290 5_3:-68004528 Msa0827040:three_prime_UTR
ATAATCAAACTAAAACTCAA+CGG 0.632837 5_3:+68004844 None:intergenic
GAGATTACAGAAATGGAAGT+CGG 0.635772 5_3:-68003663 Msa0827040:three_prime_UTR
GCTACATTAGATATAAGCGA+TGG 0.639309 5_3:-68003250 Msa0827040:three_prime_UTR
GCGAGATTCAAAGTTAACAT+CGG 0.646560 5_3:+68007012 None:intergenic
AGAACAGAGACAAGTTCGAG+TGG 0.648905 5_3:+68007168 None:intergenic
ATGCTGCCTTTGAATGTGAA+GGG 0.648957 5_3:-68004157 Msa0827040:three_prime_UTR
TAGATTCGATATGTCAGATG+AGG 0.649465 5_3:+68004187 None:intergenic
ACACTAACAGCATTATCCGA+AGG 0.649505 5_3:+68006497 None:intergenic
GTGCTTCAAAGCTGGAATTG+TGG 0.654953 5_3:+68004406 None:intergenic
TCGACTGTATATACGAAGCA+CGG 0.655820 5_3:-68003319 Msa0827040:three_prime_UTR
TATCGTGAAACATGTCGAGA+GGG 0.657935 5_3:-68004714 Msa0827040:three_prime_UTR
AAGGAAGCAGTTGAATAGGG+AGG 0.661583 5_3:-68006582 Msa0827040:CDS
AGTTGTGATGATCTAACTGG+AGG 0.669071 5_3:-68006779 Msa0827040:CDS
ATATCGTGAAACATGTCGAG+AGG 0.669887 5_3:-68004715 Msa0827040:three_prime_UTR
GGAAAATGTCGAAGAGTACG+AGG 0.670310 5_3:-68006561 Msa0827040:CDS
AAACACAATACTCTCAATGG+TGG 0.679070 5_3:+68006289 None:intergenic
ACGTTAATCTCAATGTCACA+GGG 0.700196 5_3:-68007229 None:intergenic
GCAGTTGGGGAGAAACACAG+TGG 0.768523 5_3:-68006257 Msa0827040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATATTTTAGAATAG+GGG + chr5_3:68004992-68005011 None:intergenic 10.0%
!!! CAAATTTTATATTTTAGAAT+AGG + chr5_3:68004994-68005013 None:intergenic 10.0%
!! TTTATCATAAAACAAATCAA+GGG + chr5_3:68003472-68003491 None:intergenic 15.0%
!!! TTTTATCATAAAACAAATCA+AGG + chr5_3:68003473-68003492 None:intergenic 15.0%
!!! TTTCAAAACTATTTCTTTTT+GGG + chr5_3:68004303-68004322 None:intergenic 15.0%
!!! ATTTCAAAACTATTTCTTTT+TGG + chr5_3:68004304-68004323 None:intergenic 15.0%
!!! GTATTTTTTTTATACAAACT+CGG + chr5_3:68004855-68004874 None:intergenic 15.0%
!!! ATATTTCTACATAAAATTGA+AGG + chr5_3:68005456-68005475 None:intergenic 15.0%
!! AAACAATTATTATCATTTAG+TGG + chr5_3:68006068-68006087 None:intergenic 15.0%
!!! GATAATAATTGTTTTATGAT+TGG - chr5_3:68006074-68006093 Msa0827040:intron 15.0%
!!! TGATAATTTGTTTTTGAATA+TGG - chr5_3:68007209-68007228 Msa0827040:CDS 15.0%
!! AGTATCAATATCAATAAAGT+TGG + chr5_3:68003499-68003518 None:intergenic 20.0%
!!! ACTTTTACTATTTGCAAATA+TGG - chr5_3:68003648-68003667 Msa0827040:three_prime_UTR 20.0%
!! TGAGAATTAAATTACATGTA+TGG + chr5_3:68004635-68004654 None:intergenic 20.0%
!! CAACATCTTATTGTTTATAA+AGG - chr5_3:68004896-68004915 Msa0827040:intron 20.0%
!! TTGAAAATGTCTTGTAAAAA+GGG + chr5_3:68005036-68005055 None:intergenic 20.0%
!! TTTGAAAATGTCTTGTAAAA+AGG + chr5_3:68005037-68005056 None:intergenic 20.0%
!! ATAGCTATATGATTAACTAA+TGG - chr5_3:68005109-68005128 Msa0827040:intron 20.0%
!! TAGCTATATGATTAACTAAT+GGG - chr5_3:68005110-68005129 Msa0827040:intron 20.0%
!!! TACAGAAAACAAATGTTTTA+AGG + chr5_3:68005273-68005292 None:intergenic 20.0%
!! GAAACATACATTATAAATGA+AGG - chr5_3:68005422-68005441 Msa0827040:intron 20.0%
!! ATAATCAAACTAAAACTCAA+CGG + chr5_3:68005544-68005563 None:intergenic 20.0%
!! AACAACTAATATGTCTATTT+CGG - chr5_3:68005640-68005659 Msa0827040:intron 20.0%
!!! TTATTTTAACTAGCATTTCA+TGG + chr5_3:68005920-68005939 None:intergenic 20.0%
!! TTTTCAGCAGAATTTGAATT+GGG + chr5_3:68003420-68003439 None:intergenic 25.0%
!!! TTTTTCAGCAGAATTTGAAT+TGG + chr5_3:68003421-68003440 None:intergenic 25.0%
! AATTCAAATTCTGCTGAAAA+AGG - chr5_3:68003420-68003439 Msa0827040:intron 25.0%
!!! TTCGTTTTTTCGTGAATTTA+AGG - chr5_3:68003443-68003462 Msa0827040:intron 25.0%
! CAAATAGTAAAAGTAATAGC+AGG + chr5_3:68003642-68003661 None:intergenic 25.0%
! TTACTTCTTTGTCACATATT+TGG - chr5_3:68003676-68003695 Msa0827040:three_prime_UTR 25.0%
! CAATCAAAAGAAGAAATCAA+GGG + chr5_3:68004250-68004269 None:intergenic 25.0%
! TCAATCAAAAGAAGAAATCA+AGG + chr5_3:68004251-68004270 None:intergenic 25.0%
! TCTTCACATTTCTTCAAAAT+TGG - chr5_3:68004602-68004621 Msa0827040:three_prime_UTR 25.0%
! TACTATCAACAAATGAAATC+AGG + chr5_3:68004661-68004680 None:intergenic 25.0%
! AAATCCATGATAATTCTACT+AGG + chr5_3:68004813-68004832 None:intergenic 25.0%
! TTCACATCAATAATTGAAGA+TGG - chr5_3:68004923-68004942 Msa0827040:intron 25.0%
! TGAAAATGTCTTGTAAAAAG+GGG + chr5_3:68005035-68005054 None:intergenic 25.0%
!!! AAATGTTTTAAGGAAGAGTA+AGG + chr5_3:68005263-68005282 None:intergenic 25.0%
! AACACTTGATCAAATAGAAA+AGG + chr5_3:68005362-68005381 None:intergenic 25.0%
! TAATTTATTCCATTTCTTGC+TGG - chr5_3:68005394-68005413 Msa0827040:intron 25.0%
! AAAGAAAGAAAGAATTGTGA+CGG + chr5_3:68005493-68005512 None:intergenic 25.0%
!!! GATTTGCATTAAGTTGAATA+AGG + chr5_3:68005586-68005605 None:intergenic 25.0%
! AAAGAAATGAAGAAACTCAT+AGG - chr5_3:68005789-68005808 Msa0827040:intron 25.0%
! GCTAATGAACAATCATAATT+GGG + chr5_3:68005855-68005874 None:intergenic 25.0%
! AGCTAATGAACAATCATAAT+TGG + chr5_3:68005856-68005875 None:intergenic 25.0%
! AATTATGATTGTTCATTAGC+TGG - chr5_3:68005855-68005874 Msa0827040:intron 25.0%
! ATTATGATTGTTCATTAGCT+GGG - chr5_3:68005856-68005875 Msa0827040:intron 25.0%
!! TGTTTTATGATTGGATTGTA+TGG - chr5_3:68006083-68006102 Msa0827040:intron 25.0%
!! GTTTTATGATTGGATTGTAT+GGG - chr5_3:68006084-68006103 Msa0827040:intron 25.0%
!! AAGAATCTTTTGACAATTTG+AGG - chr5_3:68006312-68006331 Msa0827040:CDS 25.0%
!! ATAACATTCATGGATTATGA+GGG - chr5_3:68006437-68006456 Msa0827040:CDS 25.0%
! TCAATTGCATTAATAAGAGA+GGG + chr5_3:68006488-68006507 None:intergenic 25.0%
! TTCAATTGCATTAATAAGAG+AGG + chr5_3:68006489-68006508 None:intergenic 25.0%
! AAAATTATGCAAGTTCCTAT+TGG - chr5_3:68006540-68006559 Msa0827040:CDS 25.0%
! TAAGACATGAGAAATAGTTA+TGG - chr5_3:68006654-68006673 Msa0827040:CDS 25.0%
! TTGTGCTATAGAAAATTTGT+TGG - chr5_3:68006925-68006944 Msa0827040:CDS 25.0%
! CAGTCGATGTTTAATATTAA+CGG + chr5_3:68007053-68007072 None:intergenic 25.0%
! ATTATTGCAAGAGAAAATGT+AGG + chr5_3:68007110-68007129 None:intergenic 25.0%
TTGAAGAATGGTAACATTGA+CGG + chr5_3:68003271-68003290 None:intergenic 30.0%
CAATTCTGGTAGAATTAAGA+GGG + chr5_3:68003314-68003333 None:intergenic 30.0%
TTCTACCAGAATTGCTAAAA+TGG - chr5_3:68003320-68003339 Msa0827040:three_prime_UTR 30.0%
TCTACCAGAATTGCTAAAAT+GGG - chr5_3:68003321-68003340 Msa0827040:three_prime_UTR 30.0%
TTTCAGCAGAATTTGAATTG+GGG + chr5_3:68003419-68003438 None:intergenic 30.0%
! TGATATTGATACTGATAGTG+CGG - chr5_3:68003506-68003525 Msa0827040:intron 30.0%
ACAAGACAAAATCTTGTCAA+AGG + chr5_3:68003733-68003752 None:intergenic 30.0%
! TTTTGGTGAAGAAGTTTCAA+AGG - chr5_3:68003784-68003803 Msa0827040:three_prime_UTR 30.0%
!!! ATCTGTACTACTTTTTCCTT+CGG - chr5_3:68003872-68003891 Msa0827040:three_prime_UTR 30.0%
GTTAAGTGTTAACTACAACA+AGG - chr5_3:68004492-68004511 Msa0827040:three_prime_UTR 30.0%
! AGGAGAAACAAATTCTGAAA+AGG - chr5_3:68004512-68004531 Msa0827040:three_prime_UTR 30.0%
GAAAAGGAAGAATAAGTGAA+TGG - chr5_3:68004528-68004547 Msa0827040:three_prime_UTR 30.0%
TTACAAGAATTCACATGACA+TGG - chr5_3:68004554-68004573 Msa0827040:three_prime_UTR 30.0%
!!! AGGCTCTTATTTTATAGGAT+AGG + chr5_3:68004961-68004980 None:intergenic 30.0%
!!! TAACGAGGCTCTTATTTTAT+AGG + chr5_3:68004966-68004985 None:intergenic 30.0%
AATCAGAAAGTCAATGACTT+CGG + chr5_3:68005201-68005220 None:intergenic 30.0%
!!! TTTCTTTCTTTTTTTGTCGC+AGG - chr5_3:68005502-68005521 Msa0827040:intron 30.0%
AACTAAAACTCAACGGATAA+CGG + chr5_3:68005537-68005556 None:intergenic 30.0%
CTAATATGTCTATTTCGGTT+TGG - chr5_3:68005645-68005664 Msa0827040:intron 30.0%
TTTCAAATCGATATCTTGTG+TGG - chr5_3:68005706-68005725 Msa0827040:intron 30.0%
TTCAAATCGATATCTTGTGT+GGG - chr5_3:68005707-68005726 Msa0827040:intron 30.0%
!!! TCAACAATACTGTTTTTGAG+TGG - chr5_3:68005763-68005782 Msa0827040:intron 30.0%
TTATGATTGTTCATTAGCTG+GGG - chr5_3:68005857-68005876 Msa0827040:intron 30.0%
! CTCAACAGAACTACATTTTA+AGG + chr5_3:68006285-68006304 None:intergenic 30.0%
! CTTAAAATGTAGTTCTGTTG+AGG - chr5_3:68006283-68006302 Msa0827040:CDS 30.0%
!! CAGATTTTCATCAGTTTTAG+AGG - chr5_3:68006353-68006372 Msa0827040:CDS 30.0%
AGAAGGATTCATAACATTCA+TGG - chr5_3:68006427-68006446 Msa0827040:CDS 30.0%
! CATAACATTCATGGATTATG+AGG - chr5_3:68006436-68006455 Msa0827040:CDS 30.0%
TAATAAGAGAGGGTGAAATT+TGG + chr5_3:68006478-68006497 None:intergenic 30.0%
! TTAATGCAATTGAAGCATCA+AGG - chr5_3:68006495-68006514 Msa0827040:CDS 30.0%
TAGGAAATCGAAGAATCAAT+TGG - chr5_3:68006595-68006614 Msa0827040:CDS 30.0%
AATCGAAGAATCAATTGGTT+TGG - chr5_3:68006600-68006619 Msa0827040:CDS 30.0%
TTCTCATGTCTTATATCTGA+AGG + chr5_3:68006647-68006666 None:intergenic 30.0%
ACCGAACATGAACAAAAATT+CGG - chr5_3:68006687-68006706 Msa0827040:CDS 30.0%
! ACCGAATTTTTGTTCATGTT+CGG + chr5_3:68006691-68006710 None:intergenic 30.0%
! ATTCTGAGAGATTACAGAAA+TGG - chr5_3:68006715-68006734 Msa0827040:CDS 30.0%
TCTGGAAAGGCTTATATAAT+CGG - chr5_3:68006768-68006787 Msa0827040:CDS 30.0%
ACTAGTTGTAGATGTTAGTT+TGG - chr5_3:68006853-68006872 Msa0827040:CDS 30.0%
TACCTACAAGATATACACAA+GGG + chr5_3:68006995-68007014 None:intergenic 30.0%
TGAATTTATCCGAAAGATTG+TGG - chr5_3:68007021-68007040 Msa0827040:CDS 30.0%
TGGTAACATTGACGGAATTA+GGG + chr5_3:68003263-68003282 None:intergenic 35.0%
ATGGTAACATTGACGGAATT+AGG + chr5_3:68003264-68003283 None:intergenic 35.0%
!! TTCAAGAGAGTGTTGAAGAA+TGG + chr5_3:68003283-68003302 None:intergenic 35.0%
GCAATTCTGGTAGAATTAAG+AGG + chr5_3:68003315-68003334 None:intergenic 35.0%
GCGAGATTCAAAGTTAACAT+CGG + chr5_3:68003376-68003395 None:intergenic 35.0%
! GATATTGATACTGATAGTGC+GGG - chr5_3:68003507-68003526 Msa0827040:intron 35.0%
TTCAAAGGAAGCAGTTGAAT+AGG - chr5_3:68003799-68003818 Msa0827040:three_prime_UTR 35.0%
TCAAAGGAAGCAGTTGAATA+GGG - chr5_3:68003800-68003819 Msa0827040:three_prime_UTR 35.0%
GTTAGTGAATTAGATGCTGT+TGG - chr5_3:68003909-68003928 Msa0827040:three_prime_UTR 35.0%
!!! ATTAGATGCTGTTGGTTTTG+AGG - chr5_3:68003917-68003936 Msa0827040:three_prime_UTR 35.0%
! AAGAACTTGATTGTTCTGGA+TGG - chr5_3:68003942-68003961 Msa0827040:three_prime_UTR 35.0%
GGATTTATAGCGAAAATCCT+TGG - chr5_3:68003985-68004004 Msa0827040:three_prime_UTR 35.0%
GTGAATGAGATGAGCTTATA+TGG - chr5_3:68004038-68004057 Msa0827040:three_prime_UTR 35.0%
AAACACAATACTCTCAATGG+TGG + chr5_3:68004099-68004118 None:intergenic 35.0%
AGCAAACACAATACTCTCAA+TGG + chr5_3:68004102-68004121 None:intergenic 35.0%
! GAGTATTGTGTTTGCTTTGA+AGG - chr5_3:68004106-68004125 Msa0827040:three_prime_UTR 35.0%
TCTCATCTTTACATCGTCTT+TGG + chr5_3:68004196-68004215 None:intergenic 35.0%
TTATGAACCATGAAACCTCT+AGG - chr5_3:68004327-68004346 Msa0827040:three_prime_UTR 35.0%
TTATTGCAATCCTTCTTCTG+AGG + chr5_3:68004371-68004390 None:intergenic 35.0%
AAGGATTGCAATAATCAAGC+TGG - chr5_3:68004377-68004396 Msa0827040:three_prime_UTR 35.0%
TTTACTACATCATCATCACG+TGG + chr5_3:68004459-68004478 None:intergenic 35.0%
CAATTCTAGTCAAAGATTGC+TGG - chr5_3:68004730-68004749 Msa0827040:three_prime_UTR 35.0%
AATTCTACTAGGACCAATGA+AGG + chr5_3:68004802-68004821 None:intergenic 35.0%
TGGTCCTAGTAGAATTATCA+TGG - chr5_3:68004806-68004825 Msa0827040:three_prime_UTR 35.0%
TTAGAATAGGGGTAATAACG+AGG + chr5_3:68004981-68005000 None:intergenic 35.0%
!! TCAGTCATTTTCCAGTTCTT+TGG - chr5_3:68005232-68005251 Msa0827040:CDS 35.0%
CAATCATAATTGGGAATCTC+TGG + chr5_3:68005846-68005865 None:intergenic 35.0%
CTGATCATAGGATGAGATAT+TGG - chr5_3:68005889-68005908 Msa0827040:intron 35.0%
AAATGGCTCAAATTCACACT+TGG + chr5_3:68005955-68005974 None:intergenic 35.0%
! GTCTTTTGAGCCTATAAAAG+AGG - chr5_3:68006022-68006041 Msa0827040:intron 35.0%
!! CTATCTGAAGCCTCTTTTAT+AGG + chr5_3:68006035-68006054 None:intergenic 35.0%
! GATGAAGATTTGACTTTGCT+CGG - chr5_3:68006149-68006168 Msa0827040:intron 35.0%
TAGATTCGATATGTCAGATG+AGG + chr5_3:68006201-68006220 None:intergenic 35.0%
GTTACCTGGTACAATTATAG+AGG - chr5_3:68006250-68006269 Msa0827040:CDS 35.0%
! TGACAATTTGAGGCAATCAA+TGG - chr5_3:68006322-68006341 Msa0827040:CDS 35.0%
!!! GTTTTAGAGGAGAAGATACT+CGG - chr5_3:68006366-68006385 Msa0827040:CDS 35.0%
AGATACTCGGTACTCATTTA+CGG - chr5_3:68006379-68006398 Msa0827040:CDS 35.0%
GATTATGAGGGATTGCATAT+TGG - chr5_3:68006449-68006468 Msa0827040:CDS 35.0%
GGCTTCACTTTGTAAAAGAT+AGG + chr5_3:68006626-68006645 None:intergenic 35.0%
GAGATTACAGAAATGGAAGT+CGG - chr5_3:68006722-68006741 Msa0827040:CDS 35.0%
!! ATTGAAGTTTCTGGTTTGTC+TGG - chr5_3:68006750-68006769 Msa0827040:CDS 35.0%
CTGGAAAGGCTTATATAATC+GGG - chr5_3:68006769-68006788 Msa0827040:CDS 35.0%
TGTTCAGTAACGAAACTACA+CGG + chr5_3:68006960-68006979 None:intergenic 35.0%
ATCCCTTGTGTATATCTTGT+AGG - chr5_3:68006990-68007009 Msa0827040:CDS 35.0%
GTACCTACAAGATATACACA+AGG + chr5_3:68006996-68007015 None:intergenic 35.0%
GCTACATTAGATATAAGCGA+TGG - chr5_3:68007135-68007154 Msa0827040:CDS 35.0%
!!! TGAAGGGCAAATTGGTCTTT+TGG + chr5_3:68003187-68003206 None:intergenic 40.0%
TTGGAACATGAAGGGCAAAT+TGG + chr5_3:68003195-68003214 None:intergenic 40.0%
ACATTGACGGAATTAGGGAT+TGG + chr5_3:68003258-68003277 None:intergenic 40.0%
!! GAGACCCATTTTAGCAATTC+TGG + chr5_3:68003328-68003347 None:intergenic 40.0%
CGAAGTTGTGATGATCTAAC+TGG - chr5_3:68003603-68003622 Msa0827040:intron 40.0%
AGTTGTGATGATCTAACTGG+AGG - chr5_3:68003606-68003625 Msa0827040:intron 40.0%
GATGATCTAACTGGAGGTTA+TGG - chr5_3:68003612-68003631 Msa0827040:intron 40.0%
! CATGTGAAGCACTCTCAAAA+GGG - chr5_3:68003760-68003779 Msa0827040:three_prime_UTR 40.0%
! AGCACTCTCAAAAGGGTTTT+TGG - chr5_3:68003767-68003786 Msa0827040:three_prime_UTR 40.0%
ACACTAACAGCATTATCCGA+AGG + chr5_3:68003891-68003910 None:intergenic 40.0%
GGTGAAGAACTTGATTGTTC+TGG - chr5_3:68003938-68003957 Msa0827040:three_prime_UTR 40.0%
! TGATTGTTCTGGATGGAACA+TGG - chr5_3:68003949-68003968 Msa0827040:three_prime_UTR 40.0%
! GATTGTTCTGGATGGAACAT+GGG - chr5_3:68003950-68003969 Msa0827040:three_prime_UTR 40.0%
!! CATTTTGCCGCATTTGAAGT+TGG - chr5_3:68004013-68004032 Msa0827040:three_prime_UTR 40.0%
TTCACCTCCAACTTCAAATG+CGG + chr5_3:68004023-68004042 None:intergenic 40.0%
TGAGCTTATATGGTGAAGTG+AGG - chr5_3:68004048-68004067 Msa0827040:three_prime_UTR 40.0%
GTGGACAAATAACCAGCTTT+AGG + chr5_3:68004080-68004099 None:intergenic 40.0%
!! TGTTTGCTTTGAAGGCAGTT+GGG - chr5_3:68004114-68004133 Msa0827040:three_prime_UTR 40.0%
! CAGTGGTTTGGATAATCTGT+TGG - chr5_3:68004145-68004164 Msa0827040:three_prime_UTR 40.0%
!! GTTGGATACTTTTGAGTCCA+TGG - chr5_3:68004163-68004182 Msa0827040:three_prime_UTR 40.0%
!! GATACTTTTGAGTCCATGGT+TGG - chr5_3:68004167-68004186 Msa0827040:three_prime_UTR 40.0%
AGCAAACTGTTACCTAGTTG+AGG - chr5_3:68004221-68004240 Msa0827040:three_prime_UTR 40.0%
AGAAACTCCTAGAGGTTTCA+TGG + chr5_3:68004337-68004356 None:intergenic 40.0%
TGTCTTGTAAAAAGGGGACA+GGG + chr5_3:68005029-68005048 None:intergenic 40.0%
ATGTCTTGTAAAAAGGGGAC+AGG + chr5_3:68005030-68005049 None:intergenic 40.0%
!! AGACTTGCTAATTGGGAGTT+TGG + chr5_3:68005166-68005185 None:intergenic 40.0%
!! AAGCAGCAGACTTGCTAATT+GGG + chr5_3:68005173-68005192 None:intergenic 40.0%
GTAAGGATCTACCAAAGAAC+TGG + chr5_3:68005246-68005265 None:intergenic 40.0%
TTTCACGATCCAGCAAGAAA+TGG + chr5_3:68005406-68005425 None:intergenic 40.0%
ATATCGTGAAACATGTCGAG+AGG - chr5_3:68005670-68005689 Msa0827040:intron 40.0%
TATCGTGAAACATGTCGAGA+GGG - chr5_3:68005671-68005690 Msa0827040:intron 40.0%
TATCTTGTGTGGGAAAAAGC+TGG - chr5_3:68005717-68005736 Msa0827040:intron 40.0%
GAAGAAACTCATAGGACAAG+AGG - chr5_3:68005797-68005816 Msa0827040:intron 40.0%
! GGGTATTTTCTGCTGATCAT+AGG - chr5_3:68005877-68005896 Msa0827040:intron 40.0%
GAAAAGATGTGCTTCAAAGC+TGG + chr5_3:68005990-68006009 None:intergenic 40.0%
TGATTGGATTGTATGGGAAG+CGG - chr5_3:68006090-68006109 Msa0827040:intron 40.0%
ATGCTGCCTTTGAATGTGAA+GGG - chr5_3:68006228-68006247 Msa0827040:CDS 40.0%
AGGTAACCCTTCACATTCAA+AGG + chr5_3:68006237-68006256 None:intergenic 40.0%
TTTGAATGTGAAGGGTTACC+TGG - chr5_3:68006236-68006255 Msa0827040:CDS 40.0%
ACCTGGTACAATTATAGAGG+TGG - chr5_3:68006253-68006272 Msa0827040:CDS 40.0%
CCTGGTACAATTATAGAGGT+GGG - chr5_3:68006254-68006273 Msa0827040:CDS 40.0%
! AATGTAGTTCTGTTGAGGAG+TGG - chr5_3:68006288-68006307 Msa0827040:CDS 40.0%
GATACTCGGTACTCATTTAC+GGG - chr5_3:68006380-68006399 Msa0827040:CDS 40.0%
TATGATGCTCTTTGTCGAGA+AGG - chr5_3:68006410-68006429 Msa0827040:CDS 40.0%
AAGCTCATCAAGACACCAAT+AGG + chr5_3:68006558-68006577 None:intergenic 40.0%
TCTTCGATTTCCTACACTCA+AGG + chr5_3:68006589-68006608 None:intergenic 40.0%
! TCGGCTTTGATTGAAGTTTC+TGG - chr5_3:68006741-68006760 Msa0827040:CDS 40.0%
!! AGTTTCTGGTTTGTCTGGAA+AGG - chr5_3:68006755-68006774 Msa0827040:CDS 40.0%
TCGACTGTATATACGAAGCA+CGG - chr5_3:68007066-68007085 Msa0827040:CDS 40.0%
TGTATATACGAAGCACGGAT+AGG - chr5_3:68007071-68007090 Msa0827040:CDS 40.0%
AAGCACGGATAGGAAATAGA+AGG - chr5_3:68007081-68007100 Msa0827040:CDS 40.0%
! GAGTGGGTTTGGAACATGAA+GGG + chr5_3:68003203-68003222 None:intergenic 45.0%
GAACAGAGACAAGTTCGAGT+GGG + chr5_3:68003219-68003238 None:intergenic 45.0%
AGAACAGAGACAAGTTCGAG+TGG + chr5_3:68003220-68003239 None:intergenic 45.0%
TTGACGGAATTAGGGATTGG+AGG + chr5_3:68003255-68003274 None:intergenic 45.0%
! GCATGTGAAGCACTCTCAAA+AGG - chr5_3:68003759-68003778 Msa0827040:three_prime_UTR 45.0%
AAGGAAGCAGTTGAATAGGG+AGG - chr5_3:68003803-68003822 Msa0827040:three_prime_UTR 45.0%
! GGAAAATGTCGAAGAGTACG+AGG - chr5_3:68003824-68003843 Msa0827040:three_prime_UTR 45.0%
GTACGAGGAATTTGAGCTTG+AGG - chr5_3:68003839-68003858 Msa0827040:three_prime_UTR 45.0%
TTTGAGCTTGAGGTTTGTGC+TGG - chr5_3:68003849-68003868 Msa0827040:three_prime_UTR 45.0%
! GAACATGGGCTAAGGCTAAA+AGG - chr5_3:68003964-68003983 Msa0827040:three_prime_UTR 45.0%
! TTTGCCGCATTTGAAGTTGG+AGG - chr5_3:68004016-68004035 Msa0827040:three_prime_UTR 45.0%
!! GTGTTTGCTTTGAAGGCAGT+TGG - chr5_3:68004113-68004132 Msa0827040:three_prime_UTR 45.0%
!! GTTTGCTTTGAAGGCAGTTG+GGG - chr5_3:68004115-68004134 Msa0827040:three_prime_UTR 45.0%
AATCAAGGGCTACCTCAACT+AGG + chr5_3:68004236-68004255 None:intergenic 45.0%
! ATCCTTCTTCTGAGGATACG+CGG + chr5_3:68004363-68004382 None:intergenic 45.0%
ATGAAGGTCTGACGGTTGAA+GGG + chr5_3:68004786-68004805 None:intergenic 45.0%
AATGAAGGTCTGACGGTTGA+AGG + chr5_3:68004787-68004806 None:intergenic 45.0%
TTCAACCGTCAGACCTTCAT+TGG - chr5_3:68004786-68004805 Msa0827040:three_prime_UTR 45.0%
TAGGACCAATGAAGGTCTGA+CGG + chr5_3:68004794-68004813 None:intergenic 45.0%
!! GAAGCAGCAGACTTGCTAAT+TGG + chr5_3:68005174-68005193 None:intergenic 45.0%
TTTGACCACAAGATCTGCGA+TGG + chr5_3:68005613-68005632 None:intergenic 45.0%
GCTGGAATTGTGGTGCAAAA+TGG + chr5_3:68005972-68005991 None:intergenic 45.0%
GTGCTTCAAAGCTGGAATTG+TGG + chr5_3:68005982-68006001 None:intergenic 45.0%
GATTGGATTGTATGGGAAGC+GGG - chr5_3:68006091-68006110 Msa0827040:intron 45.0%
ATTGGATTGTATGGGAAGCG+GGG - chr5_3:68006092-68006111 Msa0827040:intron 45.0%
ACTTTGCTCGGAAAACATCC+AGG - chr5_3:68006161-68006180 Msa0827040:intron 45.0%
GATGCTGCCTTTGAATGTGA+AGG - chr5_3:68006227-68006246 Msa0827040:CDS 45.0%
CCCACCTCTATAATTGTACC+AGG + chr5_3:68006257-68006276 None:intergenic 45.0%
TTGCGAAGATCCTTGAGTGT+AGG - chr5_3:68006576-68006595 Msa0827040:CDS 45.0%
CGGCATCTTCCACAATCTTT+CGG + chr5_3:68007033-68007052 None:intergenic 45.0%
!!! AAATTTTATATTTTAGAATA+GGG + chr5_3:68004993-68005012 None:intergenic 5.0%
! CGAGTGGGTTTGGAACATGA+AGG + chr5_3:68003204-68003223 None:intergenic 50.0%
! GAGACAAGTTCGAGTGGGTT+TGG + chr5_3:68003214-68003233 None:intergenic 50.0%
!! GAGAGTGCTTCACATGCTTC+AGG + chr5_3:68003756-68003775 None:intergenic 50.0%
! TCTGGATGGAACATGGGCTA+AGG - chr5_3:68003956-68003975 Msa0827040:three_prime_UTR 50.0%
TGCGGCAAAATGTTCAGCCA+AGG + chr5_3:68004005-68004024 None:intergenic 50.0%
GTGAGGAATCAGCCTAAAGC+TGG - chr5_3:68004065-68004084 Msa0827040:three_prime_UTR 50.0%
TGGGGAGAAACACAGTGGTT+TGG - chr5_3:68004133-68004152 Msa0827040:three_prime_UTR 50.0%
TCGTCTTTGGTCACCAACCA+TGG + chr5_3:68004183-68004202 None:intergenic 50.0%
! TCCTTCTTCTGAGGATACGC+GGG + chr5_3:68004362-68004381 None:intergenic 50.0%
CTACATCATCATCACGTGGC+TGG + chr5_3:68004455-68004474 None:intergenic 50.0%
TGAAGGTCTGACGGTTGAAG+GGG + chr5_3:68004785-68004804 None:intergenic 50.0%
CACCTCACAGCTAGTGTAGA+CGG - chr5_3:68005137-68005156 Msa0827040:intron 50.0%
CGAATCCATCGCAGATCTTG+TGG - chr5_3:68005605-68005624 Msa0827040:intron 50.0%
! TTGTATGGGAAGCGGGGTTT+TGG - chr5_3:68006098-68006117 Msa0827040:intron 50.0%
GAGGACTCGACTTCTATTCC+TGG + chr5_3:68006182-68006201 None:intergenic 50.0%
GCAGTTGGGGAGAAACACAG+TGG - chr5_3:68004128-68004147 Msa0827040:three_prime_UTR 55.0%
! CCTTCTTCTGAGGATACGCG+GGG + chr5_3:68004361-68004380 None:intergenic 55.0%
CTCCGTCTACACTAGCTGTG+AGG + chr5_3:68005142-68005161 None:intergenic 55.0%
CCCCGCGTATCCTCAGAAGA+AGG - chr5_3:68004358-68004377 Msa0827040:three_prime_UTR 60.0%
CGCGGGGCAGAAACTCCTAG+AGG + chr5_3:68004345-68004364 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 68003168 68007239 68003168 ID=Msa0827040;Name=Msa0827040
chr5_3 mRNA 68003168 68007239 68003168 ID=Msa0827040-mRNA-1;Parent=Msa0827040;Name=Msa0827040-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.66|0.5|1|0|0.25|4|1570|355
chr5_3 exon 68003168 68003395 68003168 ID=Msa0827040-mRNA-1:exon:21337;Parent=Msa0827040-mRNA-1
chr5_3 exon 68003617 68004883 68003617 ID=Msa0827040-mRNA-1:exon:21336;Parent=Msa0827040-mRNA-1
chr5_3 exon 68005154 68005260 68005154 ID=Msa0827040-mRNA-1:exon:21335;Parent=Msa0827040-mRNA-1
chr5_3 exon 68006204 68007239 68006204 ID=Msa0827040-mRNA-1:exon:21334;Parent=Msa0827040-mRNA-1
chr5_3 CDS 68006204 68007239 68006204 ID=Msa0827040-mRNA-1:cds;Parent=Msa0827040-mRNA-1
chr5_3 CDS 68005229 68005260 68005229 ID=Msa0827040-mRNA-1:cds;Parent=Msa0827040-mRNA-1
chr5_3 three_prime_UTR 68005154 68005228 68005154 ID=Msa0827040-mRNA-1:three_prime_utr;Parent=Msa0827040-mRNA-1
chr5_3 three_prime_UTR 68003617 68004883 68003617 ID=Msa0827040-mRNA-1:three_prime_utr;Parent=Msa0827040-mRNA-1
chr5_3 three_prime_UTR 68003168 68003395 68003168 ID=Msa0827040-mRNA-1:three_prime_utr;Parent=Msa0827040-mRNA-1
Gene Sequence

>Msa0827040

ATGTCACAGGGAATATCCAAAAGACCAATTTGCCCTTCATGTTCCAAACCCACTCGAACTTGTCTCTGTTCTCGAATTCTCACTCCTCCAATCCCTAATTCCGTCAATGTTACCATTCTTCAACACTCTCTTGAATGCAATCACCCTCTTAATTCTACCAGAATTGCTAAAATGGGTCTCAACAATCTCACTATTGCAACTGTTTCCGATGTTAACTTTGAATCTCGCTTTATTATTCACTTATTTGACCCCAATTCAAATTCTGCTGAAAAAGGTTCGTTTTTTCGTGAATTTAAGGAGACCCTTGATTTGTTTTATGATAAAAGTTCCAACTTTATTGATATTGATACTGATAGTGCGGGTTTGAAAAATTATGTTATTCATAATTCTACTGTTGAAAATGTGAATGATGAAGTTAAGAAAATTCTGTTTCGTCGAAGTTGTGATGATCTAACTGGAGGTTATGGAAGACCTGCTATTACTTTTACTATTTGCAAATATGGTGCAATTACTTCTTTGTCACATATTTGGATGAAGCAATGTGAATCTAATGAGTTATTAACCTTTGACAAGATTTTGTCTTGTCCTGAAGCATGTGAAGCACTCTCAAAAGGGTTTTTGGTGAAGAAGTTTCAAAGGAAGCAGTTGAATAGGGAGGAAAATGTCGAAGAGTACGAGGAATTTGAGCTTGAGGTTTGTGCTGGATCTGTACTACTTTTTCCTTCGGATAATGCTGTTAGTGTTAGTGAATTAGATGCTGTTGGTTTTGAGGTGAAGAACTTGATTGTTCTGGATGGAACATGGGCTAAGGCTAAAAGGATTTATAGCGAAAATCCTTGGCTGAACATTTTGCCGCATTTGAAGTTGGAGGTGAATGAGATGAGCTTATATGGTGAAGTGAGGAATCAGCCTAAAGCTGGTTATTTGTCCACCATTGAGAGTATTGTGTTTGCTTTGAAGGCAGTTGGGGAGAAACACAGTGGTTTGGATAATCTGTTGGATACTTTTGAGTCCATGGTTGGTGACCAAAGACGATCTAGTGTAGACGGAGTCCAAACTCCCAATTAG

Protein sequence

>Msa0827040

MSQGISKRPICPSCSKPTRTCLCSRILTPPIPNSVNVTILQHSLECNHPLNSTRIAKMGLNNLTIATVSDVNFESRFIIHLFDPNSNSAEKGSFFREFKETLDLFYDKSSNFIDIDTDSAGLKNYVIHNSTVENVNDEVKKILFRRSCDDLTGGYGRPAITFTICKYGAITSLSHIWMKQCESNELLTFDKILSCPEACEALSKGFLVKKFQRKQLNREENVEEYEEFELEVCAGSVLLFPSDNAVSVSELDAVGFEVKNLIVLDGTWAKAKRIYSENPWLNILPHLKLEVNEMSLYGEVRNQPKAGYLSTIESIVFALKAVGEKHSGLDNLLDTFESMVGDQRRSSVDGVQTPN*