AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0328730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0328730 MtrunA17_Chr2g0310081 97.248 327 9 0 1 327 39 365 0.0 655
Msa0328730 MtrunA17_Chr2g0309191 62.614 329 111 4 3 327 12 332 1.61e-135 396
Msa0328730 MtrunA17_Chr2g0309181 60.248 322 116 4 10 327 47 360 7.81e-129 380
Msa0328730 MtrunA17_Chr4g0074491 58.934 319 117 5 15 327 7 317 3.33e-123 365
Msa0328730 MtrunA17_Chr2g0309131 54.328 335 110 7 1 327 2 301 4.13e-114 339
Msa0328730 MtrunA17_Chr2g0309171 52.299 348 123 5 15 327 583 922 4.40e-109 343
Msa0328730 MtrunA17_Chr2g0309171 54.072 307 130 4 24 327 6 304 7.53e-101 321
Msa0328730 MtrunA17_Chr4g0039581 43.620 337 174 6 3 327 11 343 2.50e-84 265
Msa0328730 MtrunA17_Chr5g0395701 43.155 336 170 6 8 326 49 380 3.29e-79 253
Msa0328730 MtrunA17_Chr1g0190341 41.104 326 169 6 13 327 20 333 9.04e-79 251
Msa0328730 MtrunA17_Chr1g0190371 41.104 326 169 6 13 327 20 333 9.04e-79 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0328730 AT2G44260.1 54.203 345 139 5 1 335 1 336 2.58e-123 365
Msa0328730 AT2G44230.1 55.623 329 130 5 1 326 1 316 2.80e-123 365
Msa0328730 AT2G44260.2 49.867 375 139 6 1 335 1 366 1.21e-116 349
Msa0328730 AT3G01880.1 49.221 321 149 5 14 327 56 369 3.07e-100 307
Msa0328730 AT3G01870.1 47.975 321 152 6 14 327 52 364 4.59e-97 299
Msa0328730 AT5G18490.1 42.006 319 159 6 20 327 25 328 1.45e-80 255
Msa0328730 AT5G43950.1 42.284 324 177 6 13 327 17 339 1.45e-78 251
Msa0328730 AT3G04350.1 40.120 334 177 8 6 327 18 340 6.58e-75 241
Msa0328730 AT1G04090.1 41.867 332 171 8 13 327 17 343 1.60e-74 240
Msa0328730 AT3G04350.2 39.550 311 171 6 29 327 13 318 2.17e-69 226

Find 146 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAAATTACTTATAATTT+AGG 0.099121 2_4:-41486892 Msa0328730:three_prime_UTR
AATTGTTTCTGGGGAGTATT+TGG 0.142107 2_4:-41486965 Msa0328730:three_prime_UTR
AGTGATTTGGGTATTGATTT+TGG 0.158866 2_4:-41487000 Msa0328730:three_prime_UTR
CCTAATGGTTATAGCCCTTT+AGG 0.202069 2_4:-41487953 Msa0328730:CDS
TGAGATTAATTCATGGATTT+GGG 0.203465 2_4:-41487852 Msa0328730:CDS
GTGAGATTAATTCATGGATT+TGG 0.207795 2_4:-41487853 Msa0328730:CDS
GCCTAATTTACCCCAAATTA+AGG 0.223955 2_4:-41487648 Msa0328730:CDS
CTTGTGCTAGTGCCTTAATT+TGG 0.229784 2_4:+41487636 None:intergenic
GCCTTAATTTGGGGTAAATT+AGG 0.239469 2_4:+41487647 None:intergenic
TCTCTATTAGCTTTATCTTT+TGG 0.243499 2_4:+41487428 None:intergenic
GTGGCTTATTCTTCATTAAA+TGG 0.252619 2_4:-41487099 Msa0328730:three_prime_UTR
TTGTGCTAGTGCCTTAATTT+GGG 0.273123 2_4:+41487637 None:intergenic
ATATACCTTCACAGTCATTT+TGG 0.275416 2_4:+41488666 None:intergenic
TGAAGAACCAATCCAGCTTT+TGG 0.276809 2_4:+41487063 None:intergenic
TGCTCCATTTGACTCATCTT+TGG 0.277282 2_4:+41488069 None:intergenic
AATGTGCCAGGCCCATTAAA+AGG 0.295091 2_4:+41487306 None:intergenic
GTCACCTTGTCCACCTTCTA+AGG 0.306809 2_4:+41488198 None:intergenic
ATCTAAAGTAAGCTCAATAA+TGG 0.307113 2_4:-41488564 Msa0328730:exon
AGGTGATGAGTTGGAGAAGT+TGG 0.308524 2_4:-41486872 Msa0328730:three_prime_UTR
GCGTGTCAAGTGGCATTATT+AGG 0.311758 2_4:-41486334 None:intergenic
GACCTAAGCAGAAGAGAAAT+TGG 0.314600 2_4:-41486789 Msa0328730:three_prime_UTR
TGAAACTAAGAAGAGTGATT+TGG 0.317355 2_4:-41487013 Msa0328730:three_prime_UTR
ATCAAATGGTATTTCACAAA+TGG 0.321572 2_4:-41487560 Msa0328730:CDS
CTAATGGTTATAGCCCTTTA+GGG 0.328617 2_4:-41487952 Msa0328730:CDS
TCTAAAGTAAGCTCAATAAT+GGG 0.334118 2_4:-41488563 Msa0328730:exon
CCAAACAACAAACCTCTCTT+TGG 0.335542 2_4:-41488106 Msa0328730:CDS
CCTCAAGGTTTCTTCACATT+AGG 0.335790 2_4:-41488142 Msa0328730:CDS
CCAAAGAGAGGTTTGTTGTT+TGG 0.338726 2_4:+41488106 None:intergenic
GAAGCAATGATGGTGCTTAT+TGG 0.344274 2_4:-41487460 Msa0328730:CDS
CAATTGATTACACACTTGTT+TGG 0.344510 2_4:-41488036 Msa0328730:CDS
CAAGCTCCTAGTGTTCTTGT+TGG 0.352506 2_4:-41487761 Msa0328730:CDS
GAAACTAAGAAGAGTGATTT+GGG 0.354458 2_4:-41487012 Msa0328730:three_prime_UTR
TAATAGAGAAAGAGTCAAAA+AGG 0.358535 2_4:-41487414 Msa0328730:CDS
TATCAACATTCAACAAAATC+TGG 0.360229 2_4:-41488225 Msa0328730:CDS
TGAGGAAGATTTGAGCCTAA+TGG 0.365782 2_4:+41487488 None:intergenic
ATTGTTTCTGGGGAGTATTT+GGG 0.370952 2_4:-41486964 Msa0328730:three_prime_UTR
TGGTGGAACATTTACTGATT+TGG 0.371624 2_4:-41487346 Msa0328730:three_prime_UTR
TTCAACCATGTTCAATCAAA+TGG 0.371740 2_4:-41487574 Msa0328730:CDS
AAGTTGGAGAAGGTGGTTCC+TGG 0.379444 2_4:-41486856 Msa0328730:three_prime_UTR
AACATTTCACTTGGTAAGAT+AGG 0.380922 2_4:-41487264 Msa0328730:three_prime_UTR
CAAACAAGTGTGTAATCAAT+TGG 0.381962 2_4:+41488037 None:intergenic
TCAAATGGTATTTCACAAAT+GGG 0.383417 2_4:-41487559 Msa0328730:CDS
AAAATCTGGACAACCTTAGA+AGG 0.384268 2_4:-41488211 Msa0328730:CDS
TTCTTCACCTATCAACTCAT+TGG 0.384297 2_4:+41486822 None:intergenic
AAGATAAAGATGGTTACATT+TGG 0.391775 2_4:-41487988 Msa0328730:CDS
TTTCATGTAAAACCAATGTT+TGG 0.395827 2_4:-41487366 Msa0328730:exon
CAACAAACCTCTCTTTGGTT+GGG 0.398679 2_4:-41488101 Msa0328730:CDS
CTTCAAGGTACTAGTGAGAT+TGG 0.399867 2_4:-41487045 Msa0328730:three_prime_UTR
TTCAAACAAGAAATAGGAAG+AGG 0.408402 2_4:+41487701 None:intergenic
CTCTTCTGCTTAGGTCCAGT+GGG 0.408957 2_4:+41486796 None:intergenic
ATCAATGTGAGATTAATTCA+TGG 0.409369 2_4:-41487859 Msa0328730:CDS
AGCTCACTTCAAAAGAGAAA+AGG 0.413997 2_4:+41486662 None:intergenic
ACAACAAACCTCTCTTTGGT+TGG 0.417138 2_4:-41488102 Msa0328730:CDS
CACAACATAGTAATGGTCAA+TGG 0.421062 2_4:-41487164 Msa0328730:three_prime_UTR
TGGTTACCAATAGCACCTAA+TGG 0.422006 2_4:-41487968 Msa0328730:CDS
CTATAACCATTAGGTGCTAT+TGG 0.424957 2_4:+41487962 None:intergenic
GAAATAACTAAAAGATTTAA+CGG 0.428360 2_4:+41486628 None:intergenic
GCTTGAATACCTCTATTGAT+TGG 0.429359 2_4:+41487779 None:intergenic
GCAACTTTCTTTGAACCAAC+AGG 0.429396 2_4:-41488169 Msa0328730:CDS
TAGGTGAACATATTGGTGAT+TGG 0.434346 2_4:-41487245 Msa0328730:three_prime_UTR
GTTTGTATAGGTGGTGGATT+TGG 0.439522 2_4:-41488289 Msa0328730:intron
AGGTGAACATATTGGTGATT+GGG 0.441048 2_4:-41487244 Msa0328730:three_prime_UTR
CCTAAAGGGCTATAACCATT+AGG 0.444178 2_4:+41487953 None:intergenic
CCTAATGGATCAATTTCCAT+TGG 0.445375 2_4:+41487503 None:intergenic
TATTTATCCAAAAGCTGGAT+TGG 0.447098 2_4:-41487070 Msa0328730:three_prime_UTR
GGCAGTGGAATCATTGATCT+AGG 0.451372 2_4:-41488268 Msa0328730:CDS
TTAAGAGTAAGTAACTTCAA+TGG 0.453175 2_4:-41487210 Msa0328730:three_prime_UTR
CATGTAAAACCAATGTTTGG+TGG 0.453406 2_4:-41487363 Msa0328730:exon
ATCAAATTGTTGAGCCAGGT+TGG 0.455958 2_4:-41486939 Msa0328730:three_prime_UTR
CATGCTATTTATCCAAAAGC+TGG 0.456591 2_4:-41487075 Msa0328730:three_prime_UTR
AAAGCTGGATTGGTTCTTCA+AGG 0.458586 2_4:-41487060 Msa0328730:three_prime_UTR
GCTCACTTCAAAAGAGAAAA+GGG 0.463924 2_4:+41486663 None:intergenic
AACCAATTTCTCTTCTGCTT+AGG 0.465571 2_4:+41486787 None:intergenic
GGGGCATTGCTTTATAAGAA+AGG 0.466177 2_4:-41487539 Msa0328730:CDS
TTATAATTTAGGTGATGAGT+TGG 0.471376 2_4:-41486881 Msa0328730:three_prime_UTR
TCAAATTGTTGAGCCAGGTT+GGG 0.471665 2_4:-41486938 Msa0328730:three_prime_UTR
GGGCCTGGCACATTAAAAGT+TGG 0.476627 2_4:-41487297 Msa0328730:three_prime_UTR
CCTCAAGGTGGAAGCAATGA+TGG 0.478383 2_4:-41487470 Msa0328730:CDS
ACAACATAGTAATGGTCAAT+GGG 0.479231 2_4:-41487163 Msa0328730:three_prime_UTR
TGAGTACCTTGTGGCAAAGT+TGG 0.484565 2_4:+41488467 None:intergenic
CCAATGGAAATTGATCCATT+AGG 0.485356 2_4:-41487503 Msa0328730:CDS
AAGCAGAAGAGAAATTGGTT+TGG 0.485452 2_4:-41486784 Msa0328730:three_prime_UTR
GGAAATCAAATTGTTGAGCC+AGG 0.489502 2_4:-41486943 Msa0328730:three_prime_UTR
TCTTCACCTATCAACTCATT+GGG 0.491681 2_4:+41486823 None:intergenic
GTTGGAGAAGTTGGAGAAGG+TGG 0.493198 2_4:-41486863 Msa0328730:three_prime_UTR
GGCCTGGCACATTAAAAGTT+GGG 0.493640 2_4:-41487296 Msa0328730:three_prime_UTR
GGTAAGATAGGTGAACATAT+TGG 0.495274 2_4:-41487252 Msa0328730:three_prime_UTR
CTCATAGATAACATTTCACT+TGG 0.495794 2_4:-41487273 Msa0328730:three_prime_UTR
AAGCTTAAATGTGGTGTCAA+TGG 0.498242 2_4:+41488502 None:intergenic
GAAGGTGGACAAGGTGACTT+AGG 0.499268 2_4:-41488193 Msa0328730:CDS
GGCAAAGTTGGTATGTTAGC+TGG 0.501820 2_4:+41488479 None:intergenic
TCTCTTCTGCTTAGGTCCAG+TGG 0.506056 2_4:+41486795 None:intergenic
GGGGCAAGTGTGTGACTAAT+TGG 0.508245 2_4:+41488608 None:intergenic
ATGTGCCAGGCCCATTAAAA+GGG 0.511536 2_4:+41487307 None:intergenic
TTGTGACAATATGCCCTAAA+GGG 0.516168 2_4:+41487939 None:intergenic
TTAGGATGCAAGTACATGAA+TGG 0.525866 2_4:+41487605 None:intergenic
AGCTTAAATGTGGTGTCAAT+GGG 0.528640 2_4:+41488503 None:intergenic
TCATTGGGCAATTTCAAGCC+AGG 0.529228 2_4:+41486838 None:intergenic
GTTGCCAAAGATGAGTCAAA+TGG 0.531167 2_4:-41488073 Msa0328730:CDS
TTTAATGAAGAATAAGCCAC+TGG 0.534311 2_4:+41487102 None:intergenic
TAATGCCACTTGACACGCCA+TGG 0.535970 2_4:+41486339 None:intergenic
TAAAATGCTCTCATCGTGGT+TGG 0.543985 2_4:-41486373 Msa0328730:three_prime_UTR
AATGAGTTGATAGGTGAAGA+AGG 0.545267 2_4:-41486820 Msa0328730:three_prime_UTR
AAACCTTGAGGTATTCCTGT+TGG 0.546596 2_4:+41488154 None:intergenic
ATAGGTGAAGAAGGGCCCAC+TGG 0.547362 2_4:-41486811 Msa0328730:three_prime_UTR
AAAATCAAACAAGATAAAGA+TGG 0.551254 2_4:-41487998 Msa0328730:CDS
AAATTGCCCAATGAGTTGAT+AGG 0.552488 2_4:-41486829 Msa0328730:three_prime_UTR
ATAGGTGGTGGATTTGGCAG+TGG 0.558162 2_4:-41488283 Msa0328730:intron
CAATGATGGTGCTTATTGGT+TGG 0.558172 2_4:-41487456 Msa0328730:CDS
TCAGAAGTTGAATTTCAAAG+TGG 0.558316 2_4:-41487132 Msa0328730:three_prime_UTR
GTAAATGTTCCACCAAACAT+TGG 0.562694 2_4:+41487354 None:intergenic
TCAAACAAGAAATAGGAAGA+GGG 0.564288 2_4:+41487702 None:intergenic
AGGAGAAGAATCAAATCCAA+TGG 0.569336 2_4:-41487519 Msa0328730:CDS
TAAAACCATGGCGTGTCAAG+TGG 0.571802 2_4:-41486344 Msa0328730:three_prime_UTR
GTTGTGACAATATGCCCTAA+AGG 0.575356 2_4:+41487938 None:intergenic
CATTTACTGATTTGGCCATG+TGG 0.588074 2_4:-41487338 Msa0328730:three_prime_UTR
TATGTTAGACCAATCAATAG+AGG 0.593203 2_4:-41487788 Msa0328730:CDS
GAACCAACAGGAATACCTCA+AGG 0.594921 2_4:-41488157 Msa0328730:CDS
GGTTGGCAAATTTAAAACCA+TGG 0.594957 2_4:-41486356 Msa0328730:three_prime_UTR
AATGTGGTGTCAATGGGAAG+AGG 0.596119 2_4:+41488509 None:intergenic
AAAGTTCCAACAAGAACACT+AGG 0.596544 2_4:+41487755 None:intergenic
TGTGCTAGTGCCTTAATTTG+GGG 0.596705 2_4:+41487638 None:intergenic
CCATCATTGCTTCCACCTTG+AGG 0.597806 2_4:+41487470 None:intergenic
AGAGATTGAATGCTGTGTGT+GGG 0.600508 2_4:+41488588 None:intergenic
ATGAGTTGATAGGTGAAGAA+GGG 0.608495 2_4:-41486819 Msa0328730:three_prime_UTR
CATTGGATTCTATCAAGTGA+AGG 0.610351 2_4:+41487902 None:intergenic
TTAGGCTCAAATCTTCCTCA+AGG 0.614815 2_4:-41487485 Msa0328730:CDS
GAGATTAATTCATGGATTTG+GGG 0.616547 2_4:-41487851 Msa0328730:CDS
ATCTGGACAACCTTAGAAGG+TGG 0.616813 2_4:-41488208 Msa0328730:CDS
TGAGTTGGAGAAGTTGGAGA+AGG 0.616966 2_4:-41486866 Msa0328730:three_prime_UTR
GGCTCAAATCTTCCTCAAGG+TGG 0.618174 2_4:-41487482 Msa0328730:CDS
AAATACCATTTGATTGAACA+TGG 0.621650 2_4:+41487569 None:intergenic
CTAAAGTAAGCTCAATAATG+GGG 0.624341 2_4:-41488562 Msa0328730:exon
ACACGCCAAAATGACTGTGA+AGG 0.631313 2_4:-41488671 Msa0328730:five_prime_UTR
CAAATGGTATTTCACAAATG+GGG 0.632002 2_4:-41487558 Msa0328730:CDS
AACATACCAACTTTGCCACA+AGG 0.638221 2_4:-41488473 Msa0328730:intron
TGAGATCTGATCTCACACAT+TGG 0.647996 2_4:+41487885 None:intergenic
AAGAGATTGAATGCTGTGTG+TGG 0.651832 2_4:+41488587 None:intergenic
ACTAGAACCCAACCAAAGAG+AGG 0.659753 2_4:+41488094 None:intergenic
ACAACCTTAGAAGGTGGACA+AGG 0.671477 2_4:-41488202 Msa0328730:CDS
TTTGTAAAATGCTCTCATCG+TGG 0.673042 2_4:-41486377 Msa0328730:three_prime_UTR
GAGATTGAATGCTGTGTGTG+GGG 0.676837 2_4:+41488589 None:intergenic
TCAAAGTGGAAATAAACCAG+TGG 0.680780 2_4:-41487118 Msa0328730:three_prime_UTR
CCTAATGTGAAGAAACCTTG+AGG 0.683221 2_4:+41488142 None:intergenic
AGTGGAATCATTGATCTAGG+TGG 0.690726 2_4:-41488265 Msa0328730:CDS
GTTAGCTGGAAGCTTAAATG+TGG 0.712615 2_4:+41488493 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAAAAAATTGATGAAAA+AGG - chr2_4:41487191-41487210 Msa0328730:three_prime_UTR 15.0%
!!! TTAATTTTGAAATTGTTTCT+GGG - chr2_4:41488040-41488059 Msa0328730:CDS 15.0%
!!! CCTAAATTATAAGTAATTTT+AGG + chr2_4:41488126-41488145 None:intergenic 15.0%
!! CCTAAAATTACTTATAATTT+AGG - chr2_4:41488123-41488142 Msa0328730:CDS 15.0%
!! GAAATAACTAAAAGATTTAA+CGG + chr2_4:41488390-41488409 None:intergenic 15.0%
!!! AACAATTTTATGGAAATAAT+TGG - chr2_4:41488443-41488462 Msa0328730:intron 15.0%
!! GATAAAAAAATTGATGAAAA+AGG - chr2_4:41487191-41487210 Msa0328730:three_prime_UTR 15.0%
!!! TTAATTTTGAAATTGTTTCT+GGG - chr2_4:41488040-41488059 Msa0328730:CDS 15.0%
!!! CCTAAATTATAAGTAATTTT+AGG + chr2_4:41488126-41488145 None:intergenic 15.0%
!! CCTAAAATTACTTATAATTT+AGG - chr2_4:41488123-41488142 Msa0328730:CDS 15.0%
!! GAAATAACTAAAAGATTTAA+CGG + chr2_4:41488390-41488409 None:intergenic 15.0%
!!! AACAATTTTATGGAAATAAT+TGG - chr2_4:41488443-41488462 Msa0328730:intron 15.0%
!! AAAATCAAACAAGATAAAGA+TGG - chr2_4:41487017-41487036 Msa0328730:three_prime_UTR 20.0%
!!! AGATTTTTCAAACAAGAAAT+AGG + chr2_4:41487323-41487342 None:intergenic 20.0%
!!! TATTTTTCACAACATAGTAA+TGG - chr2_4:41487844-41487863 Msa0328730:CDS 20.0%
!!! GTTAATTTTGAAATTGTTTC+TGG - chr2_4:41488039-41488058 Msa0328730:CDS 20.0%
!!! TAATTTTGAAATTGTTTCTG+GGG - chr2_4:41488041-41488060 Msa0328730:CDS 20.0%
!!! GTGTTTTTAAGTAACTTTTT+AGG - chr2_4:41488413-41488432 Msa0328730:intron 20.0%
!!! TTTTTAAGTAACTTTTTAGG+CGG - chr2_4:41488416-41488435 Msa0328730:intron 20.0%
!!! TGATTTTAAATTGTGATTGT+AGG - chr2_4:41488483-41488502 Msa0328730:CDS 20.0%
!! AAAATCAAACAAGATAAAGA+TGG - chr2_4:41487017-41487036 Msa0328730:three_prime_UTR 20.0%
!!! AGATTTTTCAAACAAGAAAT+AGG + chr2_4:41487323-41487342 None:intergenic 20.0%
!!! TATTTTTCACAACATAGTAA+TGG - chr2_4:41487844-41487863 Msa0328730:CDS 20.0%
!!! GTTAATTTTGAAATTGTTTC+TGG - chr2_4:41488039-41488058 Msa0328730:CDS 20.0%
!!! TAATTTTGAAATTGTTTCTG+GGG - chr2_4:41488041-41488060 Msa0328730:CDS 20.0%
!!! GTGTTTTTAAGTAACTTTTT+AGG - chr2_4:41488413-41488432 Msa0328730:intron 20.0%
!!! TTTTTAAGTAACTTTTTAGG+CGG - chr2_4:41488416-41488435 Msa0328730:intron 20.0%
!!! TGATTTTAAATTGTGATTGT+AGG - chr2_4:41488483-41488502 Msa0328730:CDS 20.0%
!! ATCTAAAGTAAGCTCAATAA+TGG - chr2_4:41486451-41486470 Msa0328730:three_prime_UTR 25.0%
!! TCTAAAGTAAGCTCAATAAT+GGG - chr2_4:41486452-41486471 Msa0328730:three_prime_UTR 25.0%
!! TTGATATTTGTGACACTTTT+AGG + chr2_4:41486776-41486795 None:intergenic 25.0%
! TATCAACATTCAACAAAATC+TGG - chr2_4:41486790-41486809 Msa0328730:three_prime_UTR 25.0%
! AAGATAAAGATGGTTACATT+TGG - chr2_4:41487027-41487046 Msa0328730:three_prime_UTR 25.0%
! ATCAATGTGAGATTAATTCA+TGG - chr2_4:41487156-41487175 Msa0328730:three_prime_UTR 25.0%
! TGAGATTAATTCATGGATTT+GGG - chr2_4:41487163-41487182 Msa0328730:three_prime_UTR 25.0%
! AAATACCATTTGATTGAACA+TGG + chr2_4:41487449-41487468 None:intergenic 25.0%
! ATCAAATGGTATTTCACAAA+TGG - chr2_4:41487455-41487474 Msa0328730:CDS 25.0%
! TCAAATGGTATTTCACAAAT+GGG - chr2_4:41487456-41487475 Msa0328730:CDS 25.0%
!!! TCTCTATTAGCTTTATCTTT+TGG + chr2_4:41487590-41487609 None:intergenic 25.0%
! TAATAGAGAAAGAGTCAAAA+AGG - chr2_4:41487601-41487620 Msa0328730:CDS 25.0%
! TTTCATGTAAAACCAATGTT+TGG - chr2_4:41487649-41487668 Msa0328730:CDS 25.0%
!!! TGGATTTTTTACCCTTTTAA+TGG - chr2_4:41487697-41487716 Msa0328730:CDS 25.0%
!!! GGATTTTTTACCCTTTTAAT+GGG - chr2_4:41487698-41487717 Msa0328730:CDS 25.0%
! TTAAGAGTAAGTAACTTCAA+TGG - chr2_4:41487805-41487824 Msa0328730:CDS 25.0%
!!! GGTGAATTTTTTTAGACAAT+GGG - chr2_4:41488098-41488117 Msa0328730:CDS 25.0%
!!! GTGAATTTTTTTAGACAATG+GGG - chr2_4:41488099-41488118 Msa0328730:CDS 25.0%
! TTATAATTTAGGTGATGAGT+TGG - chr2_4:41488134-41488153 Msa0328730:CDS 25.0%
!!! TTTTAAGTAACTTTTTAGGC+GGG - chr2_4:41488417-41488436 Msa0328730:intron 25.0%
!! ATCTAAAGTAAGCTCAATAA+TGG - chr2_4:41486451-41486470 Msa0328730:three_prime_UTR 25.0%
!! TCTAAAGTAAGCTCAATAAT+GGG - chr2_4:41486452-41486471 Msa0328730:three_prime_UTR 25.0%
!! TTGATATTTGTGACACTTTT+AGG + chr2_4:41486776-41486795 None:intergenic 25.0%
! TATCAACATTCAACAAAATC+TGG - chr2_4:41486790-41486809 Msa0328730:three_prime_UTR 25.0%
! AAGATAAAGATGGTTACATT+TGG - chr2_4:41487027-41487046 Msa0328730:three_prime_UTR 25.0%
! ATCAATGTGAGATTAATTCA+TGG - chr2_4:41487156-41487175 Msa0328730:three_prime_UTR 25.0%
! TGAGATTAATTCATGGATTT+GGG - chr2_4:41487163-41487182 Msa0328730:three_prime_UTR 25.0%
! AAATACCATTTGATTGAACA+TGG + chr2_4:41487449-41487468 None:intergenic 25.0%
! ATCAAATGGTATTTCACAAA+TGG - chr2_4:41487455-41487474 Msa0328730:CDS 25.0%
! TCAAATGGTATTTCACAAAT+GGG - chr2_4:41487456-41487475 Msa0328730:CDS 25.0%
!!! TCTCTATTAGCTTTATCTTT+TGG + chr2_4:41487590-41487609 None:intergenic 25.0%
! TAATAGAGAAAGAGTCAAAA+AGG - chr2_4:41487601-41487620 Msa0328730:CDS 25.0%
! TTTCATGTAAAACCAATGTT+TGG - chr2_4:41487649-41487668 Msa0328730:CDS 25.0%
!!! TGGATTTTTTACCCTTTTAA+TGG - chr2_4:41487697-41487716 Msa0328730:CDS 25.0%
!!! GGATTTTTTACCCTTTTAAT+GGG - chr2_4:41487698-41487717 Msa0328730:CDS 25.0%
! TTAAGAGTAAGTAACTTCAA+TGG - chr2_4:41487805-41487824 Msa0328730:CDS 25.0%
!!! GGTGAATTTTTTTAGACAAT+GGG - chr2_4:41488098-41488117 Msa0328730:CDS 25.0%
!!! GTGAATTTTTTTAGACAATG+GGG - chr2_4:41488099-41488118 Msa0328730:CDS 25.0%
! TTATAATTTAGGTGATGAGT+TGG - chr2_4:41488134-41488153 Msa0328730:CDS 25.0%
!!! TTTTAAGTAACTTTTTAGGC+GGG - chr2_4:41488417-41488436 Msa0328730:intron 25.0%
! ATATACCTTCACAGTCATTT+TGG + chr2_4:41486352-41486371 None:intergenic 30.0%
CTAAAGTAAGCTCAATAATG+GGG - chr2_4:41486453-41486472 Msa0328730:three_prime_UTR 30.0%
TGGTGAAAATACTATCAAGA+AGG + chr2_4:41486586-41486605 None:intergenic 30.0%
GATAATTTCTTGTCGGAATT+TGG + chr2_4:41486606-41486625 None:intergenic 30.0%
TTCTGTCGATAATTTCTTGT+CGG + chr2_4:41486613-41486632 None:intergenic 30.0%
AACTTTGCATGTGTTTGTAT+AGG - chr2_4:41486714-41486733 Msa0328730:three_prime_UTR 30.0%
CAAACAAGTGTGTAATCAAT+TGG + chr2_4:41486981-41487000 None:intergenic 30.0%
CAATTGATTACACACTTGTT+TGG - chr2_4:41486979-41486998 Msa0328730:three_prime_UTR 30.0%
GTGAGATTAATTCATGGATT+TGG - chr2_4:41487162-41487181 Msa0328730:three_prime_UTR 30.0%
GAGATTAATTCATGGATTTG+GGG - chr2_4:41487164-41487183 Msa0328730:three_prime_UTR 30.0%
TATGTTAGACCAATCAATAG+AGG - chr2_4:41487227-41487246 Msa0328730:three_prime_UTR 30.0%
TCAAACAAGAAATAGGAAGA+GGG + chr2_4:41487316-41487335 None:intergenic 30.0%
TTCAAACAAGAAATAGGAAG+AGG + chr2_4:41487317-41487336 None:intergenic 30.0%
! CATGGTTGAAACTTTTCATT+AGG + chr2_4:41487431-41487450 None:intergenic 30.0%
TTCAACCATGTTCAATCAAA+TGG - chr2_4:41487441-41487460 Msa0328730:CDS 30.0%
CAAATGGTATTTCACAAATG+GGG - chr2_4:41487457-41487476 Msa0328730:CDS 30.0%
GGTGATTTCAAAAATTGTCA+AGG - chr2_4:41487622-41487641 Msa0328730:CDS 30.0%
AAAAGGGTAAAAAATCCACA+TGG + chr2_4:41487695-41487714 None:intergenic 30.0%
CTCATAGATAACATTTCACT+TGG - chr2_4:41487742-41487761 Msa0328730:CDS 30.0%
AACATTTCACTTGGTAAGAT+AGG - chr2_4:41487751-41487770 Msa0328730:CDS 30.0%
ACAACATAGTAATGGTCAAT+GGG - chr2_4:41487852-41487871 Msa0328730:CDS 30.0%
TCAGAAGTTGAATTTCAAAG+TGG - chr2_4:41487883-41487902 Msa0328730:CDS 30.0%
TTTAATGAAGAATAAGCCAC+TGG + chr2_4:41487916-41487935 None:intergenic 30.0%
GTGGCTTATTCTTCATTAAA+TGG - chr2_4:41487916-41487935 Msa0328730:CDS 30.0%
TATTTATCCAAAAGCTGGAT+TGG - chr2_4:41487945-41487964 Msa0328730:CDS 30.0%
TGAAACTAAGAAGAGTGATT+TGG - chr2_4:41488002-41488021 Msa0328730:CDS 30.0%
GAAACTAAGAAGAGTGATTT+GGG - chr2_4:41488003-41488022 Msa0328730:CDS 30.0%
!!! AGTGATTTGGGTATTGATTT+TGG - chr2_4:41488015-41488034 Msa0328730:CDS 30.0%
!!! GGGTGAATTTTTTTAGACAA+TGG - chr2_4:41488097-41488116 Msa0328730:CDS 30.0%
! ATATACCTTCACAGTCATTT+TGG + chr2_4:41486352-41486371 None:intergenic 30.0%
CTAAAGTAAGCTCAATAATG+GGG - chr2_4:41486453-41486472 Msa0328730:three_prime_UTR 30.0%
TGGTGAAAATACTATCAAGA+AGG + chr2_4:41486586-41486605 None:intergenic 30.0%
GATAATTTCTTGTCGGAATT+TGG + chr2_4:41486606-41486625 None:intergenic 30.0%
TTCTGTCGATAATTTCTTGT+CGG + chr2_4:41486613-41486632 None:intergenic 30.0%
AACTTTGCATGTGTTTGTAT+AGG - chr2_4:41486714-41486733 Msa0328730:three_prime_UTR 30.0%
CAAACAAGTGTGTAATCAAT+TGG + chr2_4:41486981-41487000 None:intergenic 30.0%
CAATTGATTACACACTTGTT+TGG - chr2_4:41486979-41486998 Msa0328730:three_prime_UTR 30.0%
GTGAGATTAATTCATGGATT+TGG - chr2_4:41487162-41487181 Msa0328730:three_prime_UTR 30.0%
GAGATTAATTCATGGATTTG+GGG - chr2_4:41487164-41487183 Msa0328730:three_prime_UTR 30.0%
TATGTTAGACCAATCAATAG+AGG - chr2_4:41487227-41487246 Msa0328730:three_prime_UTR 30.0%
TCAAACAAGAAATAGGAAGA+GGG + chr2_4:41487316-41487335 None:intergenic 30.0%
TTCAAACAAGAAATAGGAAG+AGG + chr2_4:41487317-41487336 None:intergenic 30.0%
! CATGGTTGAAACTTTTCATT+AGG + chr2_4:41487431-41487450 None:intergenic 30.0%
TTCAACCATGTTCAATCAAA+TGG - chr2_4:41487441-41487460 Msa0328730:CDS 30.0%
CAAATGGTATTTCACAAATG+GGG - chr2_4:41487457-41487476 Msa0328730:CDS 30.0%
GGTGATTTCAAAAATTGTCA+AGG - chr2_4:41487622-41487641 Msa0328730:CDS 30.0%
AAAAGGGTAAAAAATCCACA+TGG + chr2_4:41487695-41487714 None:intergenic 30.0%
CTCATAGATAACATTTCACT+TGG - chr2_4:41487742-41487761 Msa0328730:CDS 30.0%
AACATTTCACTTGGTAAGAT+AGG - chr2_4:41487751-41487770 Msa0328730:CDS 30.0%
ACAACATAGTAATGGTCAAT+GGG - chr2_4:41487852-41487871 Msa0328730:CDS 30.0%
TCAGAAGTTGAATTTCAAAG+TGG - chr2_4:41487883-41487902 Msa0328730:CDS 30.0%
TTTAATGAAGAATAAGCCAC+TGG + chr2_4:41487916-41487935 None:intergenic 30.0%
GTGGCTTATTCTTCATTAAA+TGG - chr2_4:41487916-41487935 Msa0328730:CDS 30.0%
TATTTATCCAAAAGCTGGAT+TGG - chr2_4:41487945-41487964 Msa0328730:CDS 30.0%
TGAAACTAAGAAGAGTGATT+TGG - chr2_4:41488002-41488021 Msa0328730:CDS 30.0%
GAAACTAAGAAGAGTGATTT+GGG - chr2_4:41488003-41488022 Msa0328730:CDS 30.0%
!!! AGTGATTTGGGTATTGATTT+TGG - chr2_4:41488015-41488034 Msa0328730:CDS 30.0%
!!! GGGTGAATTTTTTTAGACAA+TGG - chr2_4:41488097-41488116 Msa0328730:CDS 30.0%
! AGCTTAAATGTGGTGTCAAT+GGG + chr2_4:41486515-41486534 None:intergenic 35.0%
! AAGCTTAAATGTGGTGTCAA+TGG + chr2_4:41486516-41486535 None:intergenic 35.0%
TTTGCATGTGTTTGTATAGG+TGG - chr2_4:41486717-41486736 Msa0328730:three_prime_UTR 35.0%
AAAATCTGGACAACCTTAGA+AGG - chr2_4:41486804-41486823 Msa0328730:three_prime_UTR 35.0%
! CTATAACCATTAGGTGCTAT+TGG + chr2_4:41487056-41487075 None:intergenic 35.0%
CTAATGGTTATAGCCCTTTA+GGG - chr2_4:41487063-41487082 Msa0328730:three_prime_UTR 35.0%
TTGTGACAATATGCCCTAAA+GGG + chr2_4:41487079-41487098 None:intergenic 35.0%
CATTGGATTCTATCAAGTGA+AGG + chr2_4:41487116-41487135 None:intergenic 35.0%
GCTTGAATACCTCTATTGAT+TGG + chr2_4:41487239-41487258 None:intergenic 35.0%
AAAGTTCCAACAAGAACACT+AGG + chr2_4:41487263-41487282 None:intergenic 35.0%
!!! GGAACTTTTTTAGCACATGT+TGG - chr2_4:41487275-41487294 Msa0328730:three_prime_UTR 35.0%
GCCTAATTTACCCCAAATTA+AGG - chr2_4:41487367-41487386 Msa0328730:exon 35.0%
! GCCTTAATTTGGGGTAAATT+AGG + chr2_4:41487371-41487390 None:intergenic 35.0%
TTGTGCTAGTGCCTTAATTT+GGG + chr2_4:41487381-41487400 None:intergenic 35.0%
TTAGGATGCAAGTACATGAA+TGG + chr2_4:41487413-41487432 None:intergenic 35.0%
AGGAGAAGAATCAAATCCAA+TGG - chr2_4:41487496-41487515 Msa0328730:CDS 35.0%
! CCTAATGGATCAATTTCCAT+TGG + chr2_4:41487515-41487534 None:intergenic 35.0%
CCAATGGAAATTGATCCATT+AGG - chr2_4:41487512-41487531 Msa0328730:CDS 35.0%
CATGTAAAACCAATGTTTGG+TGG - chr2_4:41487652-41487671 Msa0328730:CDS 35.0%
GTAAATGTTCCACCAAACAT+TGG + chr2_4:41487664-41487683 None:intergenic 35.0%
! TGGTGGAACATTTACTGATT+TGG - chr2_4:41487669-41487688 Msa0328730:CDS 35.0%
GGTAAGATAGGTGAACATAT+TGG - chr2_4:41487763-41487782 Msa0328730:CDS 35.0%
! TAGGTGAACATATTGGTGAT+TGG - chr2_4:41487770-41487789 Msa0328730:CDS 35.0%
! AGGTGAACATATTGGTGATT+GGG - chr2_4:41487771-41487790 Msa0328730:CDS 35.0%
CACAACATAGTAATGGTCAA+TGG - chr2_4:41487851-41487870 Msa0328730:CDS 35.0%
TCAAAGTGGAAATAAACCAG+TGG - chr2_4:41487897-41487916 Msa0328730:CDS 35.0%
! CATGCTATTTATCCAAAAGC+TGG - chr2_4:41487940-41487959 Msa0328730:CDS 35.0%
!! AATTGTTTCTGGGGAGTATT+TGG - chr2_4:41488050-41488069 Msa0328730:CDS 35.0%
!! ATTGTTTCTGGGGAGTATTT+GGG - chr2_4:41488051-41488070 Msa0328730:CDS 35.0%
CTAAAAAAATTCACCCAACC+TGG + chr2_4:41488093-41488112 None:intergenic 35.0%
!! AAATTGCCCAATGAGTTGAT+AGG - chr2_4:41488186-41488205 Msa0328730:CDS 35.0%
TCTTCACCTATCAACTCATT+GGG + chr2_4:41488195-41488214 None:intergenic 35.0%
TTCTTCACCTATCAACTCAT+TGG + chr2_4:41488196-41488215 None:intergenic 35.0%
!! AATGAGTTGATAGGTGAAGA+AGG - chr2_4:41488195-41488214 Msa0328730:CDS 35.0%
!! ATGAGTTGATAGGTGAAGAA+GGG - chr2_4:41488196-41488215 Msa0328730:CDS 35.0%
AACCAATTTCTCTTCTGCTT+AGG + chr2_4:41488231-41488250 None:intergenic 35.0%
AAGCAGAAGAGAAATTGGTT+TGG - chr2_4:41488231-41488250 Msa0328730:CDS 35.0%
GCTCACTTCAAAAGAGAAAA+GGG + chr2_4:41488355-41488374 None:intergenic 35.0%
AGCTCACTTCAAAAGAGAAA+AGG + chr2_4:41488356-41488375 None:intergenic 35.0%
! AGGCGGGAAAAACAATTTTA+TGG - chr2_4:41488433-41488452 Msa0328730:intron 35.0%
TTTGTAAAATGCTCTCATCG+TGG - chr2_4:41488638-41488657 Msa0328730:five_prime_UTR 35.0%
! GGTTGGCAAATTTAAAACCA+TGG - chr2_4:41488659-41488678 Msa0328730:five_prime_UTR 35.0%
! AGCTTAAATGTGGTGTCAAT+GGG + chr2_4:41486515-41486534 None:intergenic 35.0%
! AAGCTTAAATGTGGTGTCAA+TGG + chr2_4:41486516-41486535 None:intergenic 35.0%
TTTGCATGTGTTTGTATAGG+TGG - chr2_4:41486717-41486736 Msa0328730:three_prime_UTR 35.0%
AAAATCTGGACAACCTTAGA+AGG - chr2_4:41486804-41486823 Msa0328730:three_prime_UTR 35.0%
! CTATAACCATTAGGTGCTAT+TGG + chr2_4:41487056-41487075 None:intergenic 35.0%
CTAATGGTTATAGCCCTTTA+GGG - chr2_4:41487063-41487082 Msa0328730:three_prime_UTR 35.0%
TTGTGACAATATGCCCTAAA+GGG + chr2_4:41487079-41487098 None:intergenic 35.0%
CATTGGATTCTATCAAGTGA+AGG + chr2_4:41487116-41487135 None:intergenic 35.0%
GCTTGAATACCTCTATTGAT+TGG + chr2_4:41487239-41487258 None:intergenic 35.0%
AAAGTTCCAACAAGAACACT+AGG + chr2_4:41487263-41487282 None:intergenic 35.0%
!!! GGAACTTTTTTAGCACATGT+TGG - chr2_4:41487275-41487294 Msa0328730:three_prime_UTR 35.0%
GCCTAATTTACCCCAAATTA+AGG - chr2_4:41487367-41487386 Msa0328730:exon 35.0%
! GCCTTAATTTGGGGTAAATT+AGG + chr2_4:41487371-41487390 None:intergenic 35.0%
TTGTGCTAGTGCCTTAATTT+GGG + chr2_4:41487381-41487400 None:intergenic 35.0%
TTAGGATGCAAGTACATGAA+TGG + chr2_4:41487413-41487432 None:intergenic 35.0%
AGGAGAAGAATCAAATCCAA+TGG - chr2_4:41487496-41487515 Msa0328730:CDS 35.0%
! CCTAATGGATCAATTTCCAT+TGG + chr2_4:41487515-41487534 None:intergenic 35.0%
CCAATGGAAATTGATCCATT+AGG - chr2_4:41487512-41487531 Msa0328730:CDS 35.0%
CATGTAAAACCAATGTTTGG+TGG - chr2_4:41487652-41487671 Msa0328730:CDS 35.0%
GTAAATGTTCCACCAAACAT+TGG + chr2_4:41487664-41487683 None:intergenic 35.0%
! TGGTGGAACATTTACTGATT+TGG - chr2_4:41487669-41487688 Msa0328730:CDS 35.0%
GGTAAGATAGGTGAACATAT+TGG - chr2_4:41487763-41487782 Msa0328730:CDS 35.0%
! TAGGTGAACATATTGGTGAT+TGG - chr2_4:41487770-41487789 Msa0328730:CDS 35.0%
! AGGTGAACATATTGGTGATT+GGG - chr2_4:41487771-41487790 Msa0328730:CDS 35.0%
CACAACATAGTAATGGTCAA+TGG - chr2_4:41487851-41487870 Msa0328730:CDS 35.0%
TCAAAGTGGAAATAAACCAG+TGG - chr2_4:41487897-41487916 Msa0328730:CDS 35.0%
! CATGCTATTTATCCAAAAGC+TGG - chr2_4:41487940-41487959 Msa0328730:CDS 35.0%
!! AATTGTTTCTGGGGAGTATT+TGG - chr2_4:41488050-41488069 Msa0328730:CDS 35.0%
!! ATTGTTTCTGGGGAGTATTT+GGG - chr2_4:41488051-41488070 Msa0328730:CDS 35.0%
CTAAAAAAATTCACCCAACC+TGG + chr2_4:41488093-41488112 None:intergenic 35.0%
!! AAATTGCCCAATGAGTTGAT+AGG - chr2_4:41488186-41488205 Msa0328730:CDS 35.0%
TCTTCACCTATCAACTCATT+GGG + chr2_4:41488195-41488214 None:intergenic 35.0%
TTCTTCACCTATCAACTCAT+TGG + chr2_4:41488196-41488215 None:intergenic 35.0%
!! AATGAGTTGATAGGTGAAGA+AGG - chr2_4:41488195-41488214 Msa0328730:CDS 35.0%
!! ATGAGTTGATAGGTGAAGAA+GGG - chr2_4:41488196-41488215 Msa0328730:CDS 35.0%
AACCAATTTCTCTTCTGCTT+AGG + chr2_4:41488231-41488250 None:intergenic 35.0%
AAGCAGAAGAGAAATTGGTT+TGG - chr2_4:41488231-41488250 Msa0328730:CDS 35.0%
GCTCACTTCAAAAGAGAAAA+GGG + chr2_4:41488355-41488374 None:intergenic 35.0%
AGCTCACTTCAAAAGAGAAA+AGG + chr2_4:41488356-41488375 None:intergenic 35.0%
! AGGCGGGAAAAACAATTTTA+TGG - chr2_4:41488433-41488452 Msa0328730:intron 35.0%
TTTGTAAAATGCTCTCATCG+TGG - chr2_4:41488638-41488657 Msa0328730:five_prime_UTR 35.0%
! GGTTGGCAAATTTAAAACCA+TGG - chr2_4:41488659-41488678 Msa0328730:five_prime_UTR 35.0%
AGAGATTGAATGCTGTGTGT+GGG + chr2_4:41486430-41486449 None:intergenic 40.0%
AAGAGATTGAATGCTGTGTG+TGG + chr2_4:41486431-41486450 None:intergenic 40.0%
GTTAGCTGGAAGCTTAAATG+TGG + chr2_4:41486525-41486544 None:intergenic 40.0%
AACATACCAACTTTGCCACA+AGG - chr2_4:41486542-41486561 Msa0328730:three_prime_UTR 40.0%
TGAAAGAGATGAGTACCTTG+TGG + chr2_4:41486560-41486579 None:intergenic 40.0%
!! GTTTGTATAGGTGGTGGATT+TGG - chr2_4:41486726-41486745 Msa0328730:three_prime_UTR 40.0%
AGTGGAATCATTGATCTAGG+TGG - chr2_4:41486750-41486769 Msa0328730:three_prime_UTR 40.0%
GCAACTTTCTTTGAACCAAC+AGG - chr2_4:41486846-41486865 Msa0328730:three_prime_UTR 40.0%
! AAACCTTGAGGTATTCCTGT+TGG + chr2_4:41486864-41486883 None:intergenic 40.0%
CCTAATGTGAAGAAACCTTG+AGG + chr2_4:41486876-41486895 None:intergenic 40.0%
CCTCAAGGTTTCTTCACATT+AGG - chr2_4:41486873-41486892 Msa0328730:three_prime_UTR 40.0%
!! CCAAAGAGAGGTTTGTTGTT+TGG + chr2_4:41486912-41486931 None:intergenic 40.0%
CCAAACAACAAACCTCTCTT+TGG - chr2_4:41486909-41486928 Msa0328730:three_prime_UTR 40.0%
ACAACAAACCTCTCTTTGGT+TGG - chr2_4:41486913-41486932 Msa0328730:three_prime_UTR 40.0%
CAACAAACCTCTCTTTGGTT+GGG - chr2_4:41486914-41486933 Msa0328730:three_prime_UTR 40.0%
GTTGCCAAAGATGAGTCAAA+TGG - chr2_4:41486942-41486961 Msa0328730:three_prime_UTR 40.0%
TGCTCCATTTGACTCATCTT+TGG + chr2_4:41486949-41486968 None:intergenic 40.0%
TGGTTACCAATAGCACCTAA+TGG - chr2_4:41487047-41487066 Msa0328730:three_prime_UTR 40.0%
CCTAAAGGGCTATAACCATT+AGG + chr2_4:41487065-41487084 None:intergenic 40.0%
CCTAATGGTTATAGCCCTTT+AGG - chr2_4:41487062-41487081 Msa0328730:three_prime_UTR 40.0%
GTTGTGACAATATGCCCTAA+AGG + chr2_4:41487080-41487099 None:intergenic 40.0%
! CTATCAAGTGAAGGCTTTTC+AGG + chr2_4:41487107-41487126 None:intergenic 40.0%
TGAGATCTGATCTCACACAT+TGG + chr2_4:41487133-41487152 None:intergenic 40.0%
! TGTGCTAGTGCCTTAATTTG+GGG + chr2_4:41487380-41487399 None:intergenic 40.0%
CTTGTGCTAGTGCCTTAATT+TGG + chr2_4:41487382-41487401 None:intergenic 40.0%
!! GGGGCATTGCTTTATAAGAA+AGG - chr2_4:41487476-41487495 Msa0328730:CDS 40.0%
TGAGGAAGATTTGAGCCTAA+TGG + chr2_4:41487530-41487549 None:intergenic 40.0%
TTAGGCTCAAATCTTCCTCA+AGG - chr2_4:41487530-41487549 Msa0328730:CDS 40.0%
! GAAGCAATGATGGTGCTTAT+TGG - chr2_4:41487555-41487574 Msa0328730:CDS 40.0%
! CAATGATGGTGCTTATTGGT+TGG - chr2_4:41487559-41487578 Msa0328730:CDS 40.0%
!! CATTTACTGATTTGGCCATG+TGG - chr2_4:41487677-41487696 Msa0328730:CDS 40.0%
!! TTTTACCCTTTTAATGGGCC+TGG - chr2_4:41487703-41487722 Msa0328730:CDS 40.0%
! TGAAGAACCAATCCAGCTTT+TGG + chr2_4:41487955-41487974 None:intergenic 40.0%
!! AAAGCTGGATTGGTTCTTCA+AGG - chr2_4:41487955-41487974 Msa0328730:CDS 40.0%
! CTTCAAGGTACTAGTGAGAT+TGG - chr2_4:41487970-41487989 Msa0328730:CDS 40.0%
GGAAATCAAATTGTTGAGCC+AGG - chr2_4:41488072-41488091 Msa0328730:CDS 40.0%
ATCAAATTGTTGAGCCAGGT+TGG - chr2_4:41488076-41488095 Msa0328730:CDS 40.0%
TCAAATTGTTGAGCCAGGTT+GGG - chr2_4:41488077-41488096 Msa0328730:CDS 40.0%
GACCTAAGCAGAAGAGAAAT+TGG - chr2_4:41488226-41488245 Msa0328730:CDS 40.0%
TAAAATGCTCTCATCGTGGT+TGG - chr2_4:41488642-41488661 Msa0328730:five_prime_UTR 40.0%
AGAGATTGAATGCTGTGTGT+GGG + chr2_4:41486430-41486449 None:intergenic 40.0%
AAGAGATTGAATGCTGTGTG+TGG + chr2_4:41486431-41486450 None:intergenic 40.0%
GTTAGCTGGAAGCTTAAATG+TGG + chr2_4:41486525-41486544 None:intergenic 40.0%
AACATACCAACTTTGCCACA+AGG - chr2_4:41486542-41486561 Msa0328730:three_prime_UTR 40.0%
TGAAAGAGATGAGTACCTTG+TGG + chr2_4:41486560-41486579 None:intergenic 40.0%
!! GTTTGTATAGGTGGTGGATT+TGG - chr2_4:41486726-41486745 Msa0328730:three_prime_UTR 40.0%
AGTGGAATCATTGATCTAGG+TGG - chr2_4:41486750-41486769 Msa0328730:three_prime_UTR 40.0%
GCAACTTTCTTTGAACCAAC+AGG - chr2_4:41486846-41486865 Msa0328730:three_prime_UTR 40.0%
! AAACCTTGAGGTATTCCTGT+TGG + chr2_4:41486864-41486883 None:intergenic 40.0%
CCTAATGTGAAGAAACCTTG+AGG + chr2_4:41486876-41486895 None:intergenic 40.0%
CCTCAAGGTTTCTTCACATT+AGG - chr2_4:41486873-41486892 Msa0328730:three_prime_UTR 40.0%
!! CCAAAGAGAGGTTTGTTGTT+TGG + chr2_4:41486912-41486931 None:intergenic 40.0%
CCAAACAACAAACCTCTCTT+TGG - chr2_4:41486909-41486928 Msa0328730:three_prime_UTR 40.0%
ACAACAAACCTCTCTTTGGT+TGG - chr2_4:41486913-41486932 Msa0328730:three_prime_UTR 40.0%
CAACAAACCTCTCTTTGGTT+GGG - chr2_4:41486914-41486933 Msa0328730:three_prime_UTR 40.0%
GTTGCCAAAGATGAGTCAAA+TGG - chr2_4:41486942-41486961 Msa0328730:three_prime_UTR 40.0%
TGCTCCATTTGACTCATCTT+TGG + chr2_4:41486949-41486968 None:intergenic 40.0%
TGGTTACCAATAGCACCTAA+TGG - chr2_4:41487047-41487066 Msa0328730:three_prime_UTR 40.0%
CCTAAAGGGCTATAACCATT+AGG + chr2_4:41487065-41487084 None:intergenic 40.0%
CCTAATGGTTATAGCCCTTT+AGG - chr2_4:41487062-41487081 Msa0328730:three_prime_UTR 40.0%
GTTGTGACAATATGCCCTAA+AGG + chr2_4:41487080-41487099 None:intergenic 40.0%
! CTATCAAGTGAAGGCTTTTC+AGG + chr2_4:41487107-41487126 None:intergenic 40.0%
TGAGATCTGATCTCACACAT+TGG + chr2_4:41487133-41487152 None:intergenic 40.0%
! TGTGCTAGTGCCTTAATTTG+GGG + chr2_4:41487380-41487399 None:intergenic 40.0%
CTTGTGCTAGTGCCTTAATT+TGG + chr2_4:41487382-41487401 None:intergenic 40.0%
!! GGGGCATTGCTTTATAAGAA+AGG - chr2_4:41487476-41487495 Msa0328730:CDS 40.0%
TGAGGAAGATTTGAGCCTAA+TGG + chr2_4:41487530-41487549 None:intergenic 40.0%
TTAGGCTCAAATCTTCCTCA+AGG - chr2_4:41487530-41487549 Msa0328730:CDS 40.0%
! GAAGCAATGATGGTGCTTAT+TGG - chr2_4:41487555-41487574 Msa0328730:CDS 40.0%
! CAATGATGGTGCTTATTGGT+TGG - chr2_4:41487559-41487578 Msa0328730:CDS 40.0%
!! CATTTACTGATTTGGCCATG+TGG - chr2_4:41487677-41487696 Msa0328730:CDS 40.0%
!! TTTTACCCTTTTAATGGGCC+TGG - chr2_4:41487703-41487722 Msa0328730:CDS 40.0%
! TGAAGAACCAATCCAGCTTT+TGG + chr2_4:41487955-41487974 None:intergenic 40.0%
!! AAAGCTGGATTGGTTCTTCA+AGG - chr2_4:41487955-41487974 Msa0328730:CDS 40.0%
! CTTCAAGGTACTAGTGAGAT+TGG - chr2_4:41487970-41487989 Msa0328730:CDS 40.0%
GGAAATCAAATTGTTGAGCC+AGG - chr2_4:41488072-41488091 Msa0328730:CDS 40.0%
ATCAAATTGTTGAGCCAGGT+TGG - chr2_4:41488076-41488095 Msa0328730:CDS 40.0%
TCAAATTGTTGAGCCAGGTT+GGG - chr2_4:41488077-41488096 Msa0328730:CDS 40.0%
GACCTAAGCAGAAGAGAAAT+TGG - chr2_4:41488226-41488245 Msa0328730:CDS 40.0%
TAAAATGCTCTCATCGTGGT+TGG - chr2_4:41488642-41488661 Msa0328730:five_prime_UTR 40.0%
ACACGCCAAAATGACTGTGA+AGG - chr2_4:41486344-41486363 Msa0328730:three_prime_UTR 45.0%
GAGATTGAATGCTGTGTGTG+GGG + chr2_4:41486429-41486448 None:intergenic 45.0%
!! CAATGGGAAGAGGCTTTTTC+TGG + chr2_4:41486499-41486518 None:intergenic 45.0%
! AATGTGGTGTCAATGGGAAG+AGG + chr2_4:41486509-41486528 None:intergenic 45.0%
!! GGCAAAGTTGGTATGTTAGC+TGG + chr2_4:41486539-41486558 None:intergenic 45.0%
TGAGTACCTTGTGGCAAAGT+TGG + chr2_4:41486551-41486570 None:intergenic 45.0%
GCATGTGTTTGTATAGGTGG+TGG - chr2_4:41486720-41486739 Msa0328730:three_prime_UTR 45.0%
GGCAGTGGAATCATTGATCT+AGG - chr2_4:41486747-41486766 Msa0328730:three_prime_UTR 45.0%
ATCTGGACAACCTTAGAAGG+TGG - chr2_4:41486807-41486826 Msa0328730:three_prime_UTR 45.0%
ACAACCTTAGAAGGTGGACA+AGG - chr2_4:41486813-41486832 Msa0328730:three_prime_UTR 45.0%
GAACCAACAGGAATACCTCA+AGG - chr2_4:41486858-41486877 Msa0328730:three_prime_UTR 45.0%
ACTAGAACCCAACCAAAGAG+AGG + chr2_4:41486924-41486943 None:intergenic 45.0%
!!! AAGTGAAGGCTTTTCAGGTG+TGG + chr2_4:41487102-41487121 None:intergenic 45.0%
CAAGCTCCTAGTGTTCTTGT+TGG - chr2_4:41487254-41487273 Msa0328730:three_prime_UTR 45.0%
ATGTGCCAGGCCCATTAAAA+GGG + chr2_4:41487711-41487730 None:intergenic 45.0%
AATGTGCCAGGCCCATTAAA+AGG + chr2_4:41487712-41487731 None:intergenic 45.0%
GGCCTGGCACATTAAAAGTT+GGG - chr2_4:41487719-41487738 Msa0328730:CDS 45.0%
! AGCCCAACTTTTAATGTGCC+AGG + chr2_4:41487724-41487743 None:intergenic 45.0%
! AGGTGATGAGTTGGAGAAGT+TGG - chr2_4:41488143-41488162 Msa0328730:CDS 45.0%
! TGAGTTGGAGAAGTTGGAGA+AGG - chr2_4:41488149-41488168 Msa0328730:CDS 45.0%
TCATTGGGCAATTTCAAGCC+AGG + chr2_4:41488180-41488199 None:intergenic 45.0%
TAAAACCATGGCGTGTCAAG+TGG - chr2_4:41488671-41488690 Msa0328730:five_prime_UTR 45.0%
ACACGCCAAAATGACTGTGA+AGG - chr2_4:41486344-41486363 Msa0328730:three_prime_UTR 45.0%
GAGATTGAATGCTGTGTGTG+GGG + chr2_4:41486429-41486448 None:intergenic 45.0%
!! CAATGGGAAGAGGCTTTTTC+TGG + chr2_4:41486499-41486518 None:intergenic 45.0%
! AATGTGGTGTCAATGGGAAG+AGG + chr2_4:41486509-41486528 None:intergenic 45.0%
!! GGCAAAGTTGGTATGTTAGC+TGG + chr2_4:41486539-41486558 None:intergenic 45.0%
TGAGTACCTTGTGGCAAAGT+TGG + chr2_4:41486551-41486570 None:intergenic 45.0%
GCATGTGTTTGTATAGGTGG+TGG - chr2_4:41486720-41486739 Msa0328730:three_prime_UTR 45.0%
GGCAGTGGAATCATTGATCT+AGG - chr2_4:41486747-41486766 Msa0328730:three_prime_UTR 45.0%
ATCTGGACAACCTTAGAAGG+TGG - chr2_4:41486807-41486826 Msa0328730:three_prime_UTR 45.0%
ACAACCTTAGAAGGTGGACA+AGG - chr2_4:41486813-41486832 Msa0328730:three_prime_UTR 45.0%
GAACCAACAGGAATACCTCA+AGG - chr2_4:41486858-41486877 Msa0328730:three_prime_UTR 45.0%
ACTAGAACCCAACCAAAGAG+AGG + chr2_4:41486924-41486943 None:intergenic 45.0%
!!! AAGTGAAGGCTTTTCAGGTG+TGG + chr2_4:41487102-41487121 None:intergenic 45.0%
CAAGCTCCTAGTGTTCTTGT+TGG - chr2_4:41487254-41487273 Msa0328730:three_prime_UTR 45.0%
ATGTGCCAGGCCCATTAAAA+GGG + chr2_4:41487711-41487730 None:intergenic 45.0%
AATGTGCCAGGCCCATTAAA+AGG + chr2_4:41487712-41487731 None:intergenic 45.0%
GGCCTGGCACATTAAAAGTT+GGG - chr2_4:41487719-41487738 Msa0328730:CDS 45.0%
! AGCCCAACTTTTAATGTGCC+AGG + chr2_4:41487724-41487743 None:intergenic 45.0%
! AGGTGATGAGTTGGAGAAGT+TGG - chr2_4:41488143-41488162 Msa0328730:CDS 45.0%
! TGAGTTGGAGAAGTTGGAGA+AGG - chr2_4:41488149-41488168 Msa0328730:CDS 45.0%
TCATTGGGCAATTTCAAGCC+AGG + chr2_4:41488180-41488199 None:intergenic 45.0%
TAAAACCATGGCGTGTCAAG+TGG - chr2_4:41488671-41488690 Msa0328730:five_prime_UTR 45.0%
GGGGCAAGTGTGTGACTAAT+TGG + chr2_4:41486410-41486429 None:intergenic 50.0%
!! ATAGGTGGTGGATTTGGCAG+TGG - chr2_4:41486732-41486751 Msa0328730:three_prime_UTR 50.0%
GTCACCTTGTCCACCTTCTA+AGG + chr2_4:41486820-41486839 None:intergenic 50.0%
GAAGGTGGACAAGGTGACTT+AGG - chr2_4:41486822-41486841 Msa0328730:three_prime_UTR 50.0%
GGCTCAAATCTTCCTCAAGG+TGG - chr2_4:41487533-41487552 Msa0328730:CDS 50.0%
CCATCATTGCTTCCACCTTG+AGG + chr2_4:41487548-41487567 None:intergenic 50.0%
CCTCAAGGTGGAAGCAATGA+TGG - chr2_4:41487545-41487564 Msa0328730:CDS 50.0%
GGGCCTGGCACATTAAAAGT+TGG - chr2_4:41487718-41487737 Msa0328730:CDS 50.0%
GTTGGAGAAGTTGGAGAAGG+TGG - chr2_4:41488152-41488171 Msa0328730:CDS 50.0%
AAGTTGGAGAAGGTGGTTCC+TGG - chr2_4:41488159-41488178 Msa0328730:CDS 50.0%
CTCTTCTGCTTAGGTCCAGT+GGG + chr2_4:41488222-41488241 None:intergenic 50.0%
TCTCTTCTGCTTAGGTCCAG+TGG + chr2_4:41488223-41488242 None:intergenic 50.0%
! TAATGCCACTTGACACGCCA+TGG + chr2_4:41488679-41488698 None:intergenic 50.0%
GGGGCAAGTGTGTGACTAAT+TGG + chr2_4:41486410-41486429 None:intergenic 50.0%
!! ATAGGTGGTGGATTTGGCAG+TGG - chr2_4:41486732-41486751 Msa0328730:three_prime_UTR 50.0%
GTCACCTTGTCCACCTTCTA+AGG + chr2_4:41486820-41486839 None:intergenic 50.0%
GAAGGTGGACAAGGTGACTT+AGG - chr2_4:41486822-41486841 Msa0328730:three_prime_UTR 50.0%
GGCTCAAATCTTCCTCAAGG+TGG - chr2_4:41487533-41487552 Msa0328730:CDS 50.0%
CCATCATTGCTTCCACCTTG+AGG + chr2_4:41487548-41487567 None:intergenic 50.0%
CCTCAAGGTGGAAGCAATGA+TGG - chr2_4:41487545-41487564 Msa0328730:CDS 50.0%
GGGCCTGGCACATTAAAAGT+TGG - chr2_4:41487718-41487737 Msa0328730:CDS 50.0%
GTTGGAGAAGTTGGAGAAGG+TGG - chr2_4:41488152-41488171 Msa0328730:CDS 50.0%
AAGTTGGAGAAGGTGGTTCC+TGG - chr2_4:41488159-41488178 Msa0328730:CDS 50.0%
CTCTTCTGCTTAGGTCCAGT+GGG + chr2_4:41488222-41488241 None:intergenic 50.0%
TCTCTTCTGCTTAGGTCCAG+TGG + chr2_4:41488223-41488242 None:intergenic 50.0%
! TAATGCCACTTGACACGCCA+TGG + chr2_4:41488679-41488698 None:intergenic 50.0%
ATAGGTGAAGAAGGGCCCAC+TGG - chr2_4:41488204-41488223 Msa0328730:CDS 55.0%
ATAGGTGAAGAAGGGCCCAC+TGG - chr2_4:41488204-41488223 Msa0328730:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 41486336 41488701 41486336 ID=Msa0328730;Name=Msa0328730
chr2_4 mRNA 41486336 41488701 41486336 ID=Msa0328730-mRNA-1;Parent=Msa0328730;Name=Msa0328730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=134|1|1|1|1|1|2|1043|338
chr2_4 exon 41486336 41488301 41486336 ID=Msa0328730-mRNA-1:exon:12768;Parent=Msa0328730-mRNA-1
chr2_4 exon 41488474 41488701 41488474 ID=Msa0328730-mRNA-1:exon:12767;Parent=Msa0328730-mRNA-1
chr2_4 five_prime_UTR 41488568 41488701 41488568 ID=Msa0328730-mRNA-1:five_prime_utr;Parent=Msa0328730-mRNA-1
chr2_4 CDS 41488474 41488567 41488474 ID=Msa0328730-mRNA-1:cds;Parent=Msa0328730-mRNA-1
chr2_4 CDS 41487379 41488301 41487379 ID=Msa0328730-mRNA-1:cds;Parent=Msa0328730-mRNA-1
chr2_4 three_prime_UTR 41486336 41487378 41486336 ID=Msa0328730-mRNA-1:three_prime_utr;Parent=Msa0328730-mRNA-1
Gene Sequence

>Msa0328730

ATGGGGAACAATTCATCTTCTTCTAACCAGAAAAAGCCTCTTCCCATTGACACCACATTTAAGCTTCCAGCTAACATACCAACTTTGCCACAAGGTGGTGGATTTGGCAGTGGAATCATTGATCTAGGTGGCCTAAAAGTGTCACAAATATCAACATTCAACAAAATCTGGACAACCTTAGAAGGTGGACAAGGTGACTTAGGAGCAACTTTCTTTGAACCAACAGGAATACCTCAAGGTTTCTTCACATTAGGTCACTATAGTCAACCAAACAACAAACCTCTCTTTGGTTGGGTTCTAGTTGCCAAAGATGAGTCAAATGGAGCATTGAAAAAACCAATTGATTACACACTTGTTTGGAGTAGCAAGTCAGAAAAAATCAAACAAGATAAAGATGGTTACATTTGGTTACCAATAGCACCTAATGGTTATAGCCCTTTAGGGCATATTGTCACAACCACACCTGAAAAGCCTTCACTTGATAGAATCCAATGTGTGAGATCAGATCTCACTGATCAATGTGAGATTAATTCATGGATTTGGGGTAAAGATAAAAAAATTGATGAAAAAGGTTTCAATGTTCATTATGTTAGACCAATCAATAGAGGTATTCAAGCTCCTAGTGTTCTTGTTGGAACTTTTTTAGCACATGTTGGTGAAATTACTAATAGCCCTCTTCCTATTTCTTGTTTGAAAAATCTCAACTTTATGAATTTTTCATCAATGCCTAATTTACCCCAAATTAAGGCACTAGCACAAGCTTATTCTCCATTCATGTACTTGCATCCTAATGAAAAGTTTCAACCATGTTCAATCAAATGGTATTTCACAAATGGGGCATTGCTTTATAAGAAAGGAGAAGAATCAAATCCAATGGAAATTGATCCATTAGGCTCAAATCTTCCTCAAGGTGGAAGCAATGATGGTGCTTATTGGTTGGATCTTCCAAAAGATAAAGCTAATAGAGAAAGAGTCAAAAAGGTGATTTCAAAAATTGTCAAGGTTATTTTCATGTAA
Protein sequence

>Msa0328730

MGNNSSSSNQKKPLPIDTTFKLPANIPTLPQGGGFGSGIIDLGGLKVSQISTFNKIWTTLEGGQGDLGATFFEPTGIPQGFFTLGHYSQPNNKPLFGWVLVAKDESNGALKKPIDYTLVWSSKSEKIKQDKDGYIWLPIAPNGYSPLGHIVTTTPEKPSLDRIQCVRSDLTDQCEINSWIWGKDKKIDEKGFNVHYVRPINRGIQAPSVLVGTFLAHVGEITNSPLPISCLKNLNFMNFSSMPNLPQIKALAQAYSPFMYLHPNEKFQPCSIKWYFTNGALLYKKGEESNPMEIDPLGSNLPQGGSNDGAYWLDLPKDKANRERVKKVISKIVKVIFM*