Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243290 | KEH37315.1 | 96.894 | 161 | 5 | 0 | 1 | 161 | 1 | 161 | 1.75e-108 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243290 | A0A072VGN6 | 96.894 | 161 | 5 | 0 | 1 | 161 | 1 | 161 | 8.35e-109 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026910 | Msa0243290 | 0.801080 | 1.065775e-48 | -8.615850e-47 |
| Msa0100160 | Msa0243290 | 0.801362 | 9.331119e-49 | -8.615850e-47 |
| Msa0243290 | Msa0336250 | 0.813968 | 1.956669e-51 | -8.615850e-47 |
| Msa0243290 | Msa0428050 | 0.807238 | 5.571984e-50 | -8.615850e-47 |
| Msa0243290 | Msa0468320 | 0.805341 | 1.398703e-49 | -8.615850e-47 |
| Msa0243290 | Msa0518440 | 0.805819 | 1.110611e-49 | -8.615850e-47 |
| Msa0243290 | Msa0532980 | 0.821990 | 3.009453e-53 | -8.615850e-47 |
| Msa0243290 | Msa1001390 | 0.808876 | 2.496514e-50 | -8.615850e-47 |
| Msa0243290 | Msa1031770 | 0.816667 | 4.913806e-52 | -8.615850e-47 |
| Msa0243290 | Msa1070840 | 0.803768 | 2.977553e-49 | -8.615850e-47 |
| Msa0243290 | Msa1093260 | 0.804748 | 1.861300e-49 | -8.615850e-47 |
| Msa0243290 | Msa1118760 | 0.812402 | 4.316488e-51 | -8.615850e-47 |
| Msa0243290 | Msa1371240 | 0.810654 | 1.035232e-50 | -8.615850e-47 |
| Msa0243290 | Msa1376130 | 0.822079 | 2.869225e-53 | -8.615850e-47 |
| Msa0243290 | Msa1377570 | 0.823758 | 1.165543e-53 | -8.615850e-47 |
| Msa0243290 | Msa1384870 | 0.804071 | 2.576239e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243290 | MtrunA17_Chr2g0296411 | 96.429 | 140 | 5 | 0 | 1 | 140 | 1 | 140 | 5.16e-95 | 271 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243290 | AT5G18540.1 | 69.444 | 108 | 32 | 1 | 6 | 112 | 8 | 115 | 3.13e-41 | 136 |
| Msa0243290 | AT5G18540.2 | 69.444 | 108 | 32 | 1 | 6 | 112 | 8 | 115 | 3.92e-41 | 135 |
| Msa0243290 | AT5G18540.3 | 71.429 | 105 | 29 | 1 | 6 | 109 | 8 | 112 | 3.93e-41 | 134 |
| Msa0243290 | AT5G18540.4 | 71.429 | 105 | 29 | 1 | 6 | 109 | 8 | 112 | 3.93e-41 | 134 |
Find 37 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCGCCATTTCGAATT+TGG | 0.064979 | 2_2:-20214194 | None:intergenic |
| TTCTTACTTGTTGCATCTTC+TGG | 0.226890 | 2_2:-20218767 | None:intergenic |
| TCTTTCGCCATTTCGAATTT+GGG | 0.247508 | 2_2:-20214193 | None:intergenic |
| AAAGGTATGCTGAAGATCTT+TGG | 0.283982 | 2_2:+20218720 | Msa0243290:CDS |
| TCAATATCTATCAGAATAAA+AGG | 0.285683 | 2_2:+20218702 | Msa0243290:intron |
| GACAAATAAAGCAGCGGCTT+TGG | 0.324493 | 2_2:+20214491 | Msa0243290:CDS |
| CTTAGAAGCGTACCTGGGTT+TGG | 0.342468 | 2_2:-20214302 | None:intergenic |
| TTAATAGATGCCAATCCATT+AGG | 0.362024 | 2_2:-20214543 | None:intergenic |
| ACTTGTAGAAACAGCCTGTT+TGG | 0.376483 | 2_2:-20214598 | None:intergenic |
| GCTGCTTTATTTGTCGCAAC+AGG | 0.376882 | 2_2:-20214483 | None:intergenic |
| ACAGCAATTTCAAGTAGATC+AGG | 0.393490 | 2_2:-20214567 | None:intergenic |
| TTGTGAGAGTTGGGAAGAAT+GGG | 0.399161 | 2_2:-20214277 | None:intergenic |
| AAGGTATGCTGAAGATCTTT+GGG | 0.442738 | 2_2:+20218721 | Msa0243290:CDS |
| TTTGTGAGAGTTGGGAAGAA+TGG | 0.446565 | 2_2:-20214278 | None:intergenic |
| CTTTCGCCATTTCGAATTTG+GGG | 0.463094 | 2_2:-20214192 | None:intergenic |
| GATGAACGACGCGCACTTCG+TGG | 0.465818 | 2_2:+20214235 | Msa0243290:CDS |
| GGTTTGGATTTGTGAGAGTT+GGG | 0.466859 | 2_2:-20214286 | None:intergenic |
| TGGTGCAGATTGGCTCATCC+TGG | 0.470528 | 2_2:+20214456 | Msa0243290:intron |
| AGGAAGTTGAAGGAACCTAA+TGG | 0.473777 | 2_2:+20214528 | Msa0243290:CDS |
| ATCCGGCATGTAGAATCCTT+TGG | 0.476562 | 2_2:+20216938 | Msa0243290:CDS |
| AAATGATCTCCCTGCGGTAA+AGG | 0.494996 | 2_2:+20216988 | Msa0243290:CDS |
| GAGTTGGGAAGAATGGGAAG+AGG | 0.497265 | 2_2:-20214271 | None:intergenic |
| TTCTTGCATTCCTTTACCGC+AGG | 0.498619 | 2_2:-20216998 | None:intergenic |
| GGGTTTGGATTTGTGAGAGT+TGG | 0.508864 | 2_2:-20214287 | None:intergenic |
| CAGCAATTTCAAGTAGATCA+GGG | 0.537601 | 2_2:-20214566 | None:intergenic |
| GTTGAAGGAACCTAATGGAT+TGG | 0.539737 | 2_2:+20214533 | Msa0243290:CDS |
| TTTGTCGCAACAGGTCCACC+AGG | 0.551614 | 2_2:-20214474 | None:intergenic |
| TTTCGCCATTTCGAATTTGG+GGG | 0.560025 | 2_2:-20214191 | None:intergenic |
| ACTTGCATCTGAGTCGCCAA+AGG | 0.566969 | 2_2:-20216954 | None:intergenic |
| CGCCAAAGGATTCTACATGC+CGG | 0.572552 | 2_2:-20216940 | None:intergenic |
| TCTTGCATTCCTTTACCGCA+GGG | 0.595427 | 2_2:-20216997 | None:intergenic |
| CGACTCAGATGCAAGTGAAG+AGG | 0.603099 | 2_2:+20216961 | Msa0243290:CDS |
| TTTGGGACAAACTTGAAGCA+AGG | 0.604520 | 2_2:+20218738 | Msa0243290:CDS |
| TGCAGATTGGCTCATCCTGG+TGG | 0.617957 | 2_2:+20214459 | Msa0243290:intron |
| ACTCTCACAAATCCAAACCC+AGG | 0.696805 | 2_2:+20214290 | Msa0243290:CDS |
| TGTTGCGACAAATAAAGCAG+CGG | 0.710999 | 2_2:+20214485 | Msa0243290:CDS |
| GGAACAAAATGATCTCCCTG+CGG | 0.782854 | 2_2:+20216982 | Msa0243290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAATTTTCATTATATTTT+CGG | - | chr2_2:20214956-20214975 | None:intergenic | 10.0% |
| !! | ATTTAAGAAATTAATTCAAT+AGG | + | chr2_2:20217339-20217358 | Msa0243290:intron | 10.0% |
| !!! | TTCTTTTTGTTCATTTTATT+TGG | + | chr2_2:20214670-20214689 | Msa0243290:intron | 15.0% |
| !! | ATATTATCATATATCTGTAT+CGG | - | chr2_2:20214855-20214874 | None:intergenic | 15.0% |
| !! | ATAACATTTCTTATTAAACA+TGG | - | chr2_2:20215144-20215163 | None:intergenic | 15.0% |
| !! | TTAATAAGAAATGTTATGTT+TGG | + | chr2_2:20215147-20215166 | Msa0243290:intron | 15.0% |
| !! | TAATAAGAAATGTTATGTTT+GGG | + | chr2_2:20215148-20215167 | Msa0243290:intron | 15.0% |
| !! | TATAATATATATTGTGTCTT+GGG | + | chr2_2:20215323-20215342 | Msa0243290:intron | 15.0% |
| !!! | TTTGAATAAACAAATTTTGT+GGG | - | chr2_2:20216011-20216030 | None:intergenic | 15.0% |
| !!! | ATTTGAATAAACAAATTTTG+TGG | - | chr2_2:20216012-20216031 | None:intergenic | 15.0% |
| !!! | CTAACATTTTTTTTTTGAAA+CGG | - | chr2_2:20216733-20216752 | None:intergenic | 15.0% |
| !!! | TACAAATTAGATTAATGTTT+TGG | - | chr2_2:20216799-20216818 | None:intergenic | 15.0% |
| !!! | AAAATTGTTATTCATTCAAA+TGG | + | chr2_2:20217306-20217325 | Msa0243290:intron | 15.0% |
| !! | TATATCAATAAATACCAATA+GGG | - | chr2_2:20217483-20217502 | None:intergenic | 15.0% |
| !! | ATATATCAATAAATACCAAT+AGG | - | chr2_2:20217484-20217503 | None:intergenic | 15.0% |
| !!! | ATCAATGTTTTCAAATTTTT+TGG | + | chr2_2:20217855-20217874 | Msa0243290:intron | 15.0% |
| !!! | TCAATGTTTTCAAATTTTTT+GGG | + | chr2_2:20217856-20217875 | Msa0243290:intron | 15.0% |
| !! | AAATCAAAAATTTCACCAAT+TGG | - | chr2_2:20214372-20214391 | None:intergenic | 20.0% |
| !!! | AATTTTTGATTTTGAATTCG+TGG | + | chr2_2:20214380-20214399 | Msa0243290:intron | 20.0% |
| !!! | ATTTTTGATTTTGAATTCGT+GGG | + | chr2_2:20214381-20214400 | Msa0243290:intron | 20.0% |
| !!! | TGTAATTCCTTTAATTTTAG+TGG | + | chr2_2:20214410-20214429 | Msa0243290:intron | 20.0% |
| !!! | GTAATTCCTTTAATTTTAGT+GGG | + | chr2_2:20214411-20214430 | Msa0243290:intron | 20.0% |
| !!! | TGTTTTTTTAGTGATTATTG+TGG | + | chr2_2:20214766-20214785 | Msa0243290:intron | 20.0% |
| !! | ATATATGATACAATGTGTTT+AGG | + | chr2_2:20214871-20214890 | Msa0243290:intron | 20.0% |
| !! | TATATGATACAATGTGTTTA+GGG | + | chr2_2:20214872-20214891 | Msa0243290:intron | 20.0% |
| !! | TGTTATTGTTAATATGTAAG+TGG | + | chr2_2:20215013-20215032 | Msa0243290:intron | 20.0% |
| !! | GTATAATATATATTGTGTCT+TGG | + | chr2_2:20215322-20215341 | Msa0243290:intron | 20.0% |
| !!! | TTGAATAAACAAATTTTGTG+GGG | - | chr2_2:20216010-20216029 | None:intergenic | 20.0% |
| !! | CTAATTCAAAAAGAAATATC+CGG | + | chr2_2:20216921-20216940 | Msa0243290:CDS | 20.0% |
| !! | GAAGAAAAATAAAAAACGAA+AGG | + | chr2_2:20217045-20217064 | Msa0243290:CDS | 20.0% |
| !!! | ATTTTCAGTTTATTTCTTTC+AGG | + | chr2_2:20217236-20217255 | Msa0243290:intron | 20.0% |
| !! | TTTGAAGAAATTAGTTACAT+TGG | + | chr2_2:20217552-20217571 | Msa0243290:intron | 20.0% |
| !! | GAGAAATCTTAATAAAAACA+CGG | - | chr2_2:20217623-20217642 | None:intergenic | 20.0% |
| !!! | AATAGGTTTTGATTATCTAA+AGG | - | chr2_2:20217659-20217678 | None:intergenic | 20.0% |
| !! | TCATCATCAACAATTATAAT+AGG | - | chr2_2:20217676-20217695 | None:intergenic | 20.0% |
| !!! | TCACATGATTTTTATTAGTT+TGG | - | chr2_2:20217711-20217730 | None:intergenic | 20.0% |
| !! | TTAAAATACTATCGAAAGAT+AGG | + | chr2_2:20218204-20218223 | Msa0243290:intron | 20.0% |
| !!! | AATAATTTTCAAATCTGTGT+TGG | - | chr2_2:20218411-20218430 | None:intergenic | 20.0% |
| !! | ACACAGATTTGAAAATTATT+AGG | + | chr2_2:20218411-20218430 | Msa0243290:intron | 20.0% |
| !! | GATTTCTAACTATATTAAGT+TGG | + | chr2_2:20218483-20218502 | Msa0243290:intron | 20.0% |
| !!! | ATTAAGTTGGAAAAATTTGA+CGG | + | chr2_2:20218496-20218515 | Msa0243290:intron | 20.0% |
| !! | TCAATATCTATCAGAATAAA+AGG | + | chr2_2:20218702-20218721 | Msa0243290:intron | 20.0% |
| !!! | TGATTTGGATTTGTGATTTT+TGG | + | chr2_2:20214436-20214455 | Msa0243290:intron | 25.0% |
| !!! | TTGGTTATTAATTGATGATG+TGG | + | chr2_2:20214689-20214708 | Msa0243290:intron | 25.0% |
| ! | TAATATGTAAGTGGCAAAAT+AGG | + | chr2_2:20215022-20215041 | Msa0243290:intron | 25.0% |
| ! | AATATGTAAGTGGCAAAATA+GGG | + | chr2_2:20215023-20215042 | Msa0243290:intron | 25.0% |
| ! | AATAGGGATTAATAGTTGAA+TGG | + | chr2_2:20215039-20215058 | Msa0243290:intron | 25.0% |
| ! | ATAGGGATTAATAGTTGAAT+GGG | + | chr2_2:20215040-20215059 | Msa0243290:intron | 25.0% |
| !! | ATGTGTGTTTTTCTGTTATT+GGG | + | chr2_2:20215075-20215094 | Msa0243290:intron | 25.0% |
| ! | TCTTATTAAACATGGCAAAA+GGG | - | chr2_2:20215136-20215155 | None:intergenic | 25.0% |
| ! | TTCTTATTAAACATGGCAAA+AGG | - | chr2_2:20215137-20215156 | None:intergenic | 25.0% |
| ! | TTGTTTGTAGTATTAGAATG+AGG | + | chr2_2:20215285-20215304 | Msa0243290:intron | 25.0% |
| ! | TGTTTGTAGTATTAGAATGA+GGG | + | chr2_2:20215286-20215305 | Msa0243290:intron | 25.0% |
| ! | TTTCCTCTTCAATAATCTTA+AGG | + | chr2_2:20215589-20215608 | Msa0243290:intron | 25.0% |
| ! | AAAATCAATGTATTCGTTGT+TGG | + | chr2_2:20215691-20215710 | Msa0243290:intron | 25.0% |
| ! | TAAATTACAACAACACCAAT+TGG | - | chr2_2:20216579-20216598 | None:intergenic | 25.0% |
| ! | AATTTACTATTGATCGTTGT+AGG | + | chr2_2:20216593-20216612 | Msa0243290:intron | 25.0% |
| ! | TTGTTATCCTTGTATTTGTT+CGG | + | chr2_2:20216628-20216647 | Msa0243290:intron | 25.0% |
| ! | TAAAAAAATCCATATCTGAC+AGG | - | chr2_2:20216767-20216786 | None:intergenic | 25.0% |
| !! | GACATAGAATATTAGCTTAA+TGG | - | chr2_2:20216828-20216847 | None:intergenic | 25.0% |
| ! | AAAATTGAAGAGAATCACAA+AGG | - | chr2_2:20216890-20216909 | None:intergenic | 25.0% |
| !! | TTGTGATTCTCTTCAATTTT+AGG | + | chr2_2:20216890-20216909 | Msa0243290:intron | 25.0% |
| !!! | TTGATATTGTAAAAGTGTCT+AGG | - | chr2_2:20217101-20217120 | None:intergenic | 25.0% |
| ! | CACATTTAATTCCTAAGAAA+AGG | - | chr2_2:20217459-20217478 | None:intergenic | 25.0% |
| !! | ATTGATATATTTTCAGACAG+AGG | + | chr2_2:20217494-20217513 | Msa0243290:intron | 25.0% |
| !! | AACACGGATAAATTTGAAAT+AGG | - | chr2_2:20217607-20217626 | None:intergenic | 25.0% |
| ! | AAAAATCATGTGATACACAT+TGG | + | chr2_2:20217718-20217737 | Msa0243290:intron | 25.0% |
| ! | CATAACAAAGATGCAATATT+TGG | - | chr2_2:20217884-20217903 | None:intergenic | 25.0% |
| ! | CAAATATTGCATCTTTGTTA+TGG | + | chr2_2:20217882-20217901 | Msa0243290:intron | 25.0% |
| ! | GATTTGACATTGAAATGTAT+AGG | + | chr2_2:20217904-20217923 | Msa0243290:intron | 25.0% |
| ! | TGCACTAGCAAATAAAATAA+TGG | - | chr2_2:20218151-20218170 | None:intergenic | 25.0% |
| ! | TTATGATATTGGATGCAAAT+GGG | - | chr2_2:20218295-20218314 | None:intergenic | 25.0% |
| ! | TTTATGATATTGGATGCAAA+TGG | - | chr2_2:20218296-20218315 | None:intergenic | 25.0% |
| ! | TTGCATCCAATATCATAAAT+TGG | + | chr2_2:20218297-20218316 | Msa0243290:intron | 25.0% |
| ! | ATCCAATATCATAAATTGGT+GGG | + | chr2_2:20218301-20218320 | Msa0243290:intron | 25.0% |
| !! | AAAGAATTTCCAAAGTGTTT+AGG | - | chr2_2:20218338-20218357 | None:intergenic | 25.0% |
| !! | TAAACACTTTGGAAATTCTT+TGG | + | chr2_2:20218337-20218356 | Msa0243290:intron | 25.0% |
| !! | ATCGATTTATTTGTGTACAA+TGG | + | chr2_2:20218441-20218460 | Msa0243290:intron | 25.0% |
| GTTAGTTATGAAGCGTATAA+TGG | - | chr2_2:20214341-20214360 | None:intergenic | 30.0% | |
| CAAAAATTTCACCAATTGGT+GGG | - | chr2_2:20214368-20214387 | None:intergenic | 30.0% | |
| TCAAAAATTTCACCAATTGG+TGG | - | chr2_2:20214369-20214388 | None:intergenic | 30.0% | |
| ATCAGACCCACTAAAATTAA+AGG | - | chr2_2:20214420-20214439 | None:intergenic | 30.0% | |
| !! | TAATTTTAGTGGGTCTGATT+TGG | + | chr2_2:20214421-20214440 | Msa0243290:intron | 30.0% |
| TTAATAGATGCCAATCCATT+AGG | - | chr2_2:20214546-20214565 | None:intergenic | 30.0% | |
| !! | TTAATTGATGATGTGGTGAT+TGG | + | chr2_2:20214696-20214715 | Msa0243290:intron | 30.0% |
| TAGTGATTATTGTGGAATGA+TGG | + | chr2_2:20214774-20214793 | Msa0243290:intron | 30.0% | |
| AGTGATTATTGTGGAATGAT+GGG | + | chr2_2:20214775-20214794 | Msa0243290:intron | 30.0% | |
| GTATCAAATTATCATAAGCC+AGG | - | chr2_2:20214806-20214825 | None:intergenic | 30.0% | |
| TAAGAGAAGAAATTGTGAAC+TGG | + | chr2_2:20214977-20214996 | Msa0243290:intron | 30.0% | |
| TAATAGTTGAATGGGTGATA+TGG | + | chr2_2:20215048-20215067 | Msa0243290:intron | 30.0% | |
| ! | CATGTGTGTTTTTCTGTTAT+TGG | + | chr2_2:20215074-20215093 | Msa0243290:intron | 30.0% |
| ! | TGTTTTTCTGTTATTGGGTT+TGG | + | chr2_2:20215080-20215099 | Msa0243290:intron | 30.0% |
| ! | AGTGTTTTATGAGTGTATTG+TGG | + | chr2_2:20215182-20215201 | Msa0243290:intron | 30.0% |
| ATGTGATCTTTCTGATTTCA+TGG | + | chr2_2:20215237-20215256 | Msa0243290:intron | 30.0% | |
| ! | CAATAATCTTAAGGAGGTTT+TGG | + | chr2_2:20215598-20215617 | Msa0243290:intron | 30.0% |
| TAAATGTAATGTGCTTGATC+AGG | + | chr2_2:20215859-20215878 | Msa0243290:intron | 30.0% | |
| ATTCAAATGCCATGTTTGAT+TGG | + | chr2_2:20216024-20216043 | Msa0243290:intron | 30.0% | |
| ! | CGATCAGATTTTTAATGATG+TGG | + | chr2_2:20216127-20216146 | Msa0243290:intron | 30.0% |
| ATTGTCTGAATAGGTAAGTT+TGG | + | chr2_2:20216264-20216283 | Msa0243290:intron | 30.0% | |
| CTCTCTTCAATTGAATTTGT+AGG | + | chr2_2:20216847-20216866 | Msa0243290:intron | 30.0% | |
| ! | TGATTCTCTTCAATTTTAGG+TGG | + | chr2_2:20216893-20216912 | Msa0243290:intron | 30.0% |
| ! | TCACTACTTGTTAATGTGAT+CGG | + | chr2_2:20217068-20217087 | Msa0243290:intron | 30.0% |
| CAACAACTAAGCATGATTTA+TGG | + | chr2_2:20217118-20217137 | Msa0243290:intron | 30.0% | |
| ! | CCAAACAATTTTCATTTGTG+AGG | - | chr2_2:20217151-20217170 | None:intergenic | 30.0% |
| CCTCACAAATGAAAATTGTT+TGG | + | chr2_2:20217148-20217167 | Msa0243290:intron | 30.0% | |
| CACAAATGAAAATTGTTTGG+TGG | + | chr2_2:20217151-20217170 | Msa0243290:intron | 30.0% | |
| ! | TTTCAGGATGTGATACTTTT+AGG | + | chr2_2:20217252-20217271 | Msa0243290:intron | 30.0% |
| CTTAAACAACTGTGTTTCTT+AGG | + | chr2_2:20217370-20217389 | Msa0243290:intron | 30.0% | |
| TCATAGTGTCATGTGAAATT+TGG | + | chr2_2:20217424-20217443 | Msa0243290:intron | 30.0% | |
| CATAGTGTCATGTGAAATTT+GGG | + | chr2_2:20217425-20217444 | Msa0243290:intron | 30.0% | |
| ! | ACGGATAAATTTGAAATAGG+AGG | - | chr2_2:20217604-20217623 | None:intergenic | 30.0% |
| AAATGTATAGGTGTGTTCTT+AGG | + | chr2_2:20217916-20217935 | Msa0243290:intron | 30.0% | |
| TCATGAATGATTGTGATTCT+TGG | + | chr2_2:20218000-20218019 | Msa0243290:intron | 30.0% | |
| AATGGTTTAGTGAATGCAAA+TGG | - | chr2_2:20218133-20218152 | None:intergenic | 30.0% | |
| AGTTACCAAAGAATCTTGAA+AGG | + | chr2_2:20218255-20218274 | Msa0243290:intron | 30.0% | |
| GTTACCAAAGAATCTTGAAA+GGG | + | chr2_2:20218256-20218275 | Msa0243290:intron | 30.0% | |
| AAATCCCTTTCAAGATTCTT+TGG | - | chr2_2:20218263-20218282 | None:intergenic | 30.0% | |
| CATCCAATATCATAAATTGG+TGG | + | chr2_2:20218300-20218319 | Msa0243290:intron | 30.0% | |
| TCCAATATCATAAATTGGTG+GGG | + | chr2_2:20218302-20218321 | Msa0243290:intron | 30.0% | |
| TGAATTGAACCTAAACACTT+TGG | + | chr2_2:20218326-20218345 | Msa0243290:intron | 30.0% | |
| ! | ATCTTGTTATCTTTATCCAC+TGG | - | chr2_2:20218594-20218613 | None:intergenic | 30.0% |
| ! | ATTTTTGCAGAAACTAGAGA+AGG | + | chr2_2:20218612-20218631 | Msa0243290:intron | 30.0% |
| AAAAAGAGAGAAACGCACAA+CGG | + | chr2_2:20214162-20214181 | Msa0243290:five_prime_UTR | 35.0% | |
| AATTTCCCCCAAATTCGAAA+TGG | + | chr2_2:20214186-20214205 | Msa0243290:exon | 35.0% | |
| TCTTTCGCCATTTCGAATTT+GGG | - | chr2_2:20214196-20214215 | None:intergenic | 35.0% | |
| ! | ATGAAGCGTATAATGGAAAG+AGG | - | chr2_2:20214334-20214353 | None:intergenic | 35.0% |
| !!! | TTGTGATTTTTGGTGCAGAT+TGG | + | chr2_2:20214446-20214465 | Msa0243290:intron | 35.0% |
| !! | CTTTGGCTAAATTTTTGGAG+AGG | + | chr2_2:20214508-20214527 | Msa0243290:CDS | 35.0% |
| !! | ATTTTTGGAGAGGAAGTTGA+AGG | + | chr2_2:20214518-20214537 | Msa0243290:CDS | 35.0% |
| ! | CAGCAATTTCAAGTAGATCA+GGG | - | chr2_2:20214569-20214588 | None:intergenic | 35.0% |
| ! | ACAGCAATTTCAAGTAGATC+AGG | - | chr2_2:20214570-20214589 | None:intergenic | 35.0% |
| TGCTGTTAAAAATGCCAAAC+AGG | + | chr2_2:20214584-20214603 | Msa0243290:CDS | 35.0% | |
| TATGAGTGTATTGTGGTAAC+TGG | + | chr2_2:20215189-20215208 | Msa0243290:intron | 35.0% | |
| AGAAAGATCACATTGACAAC+TGG | - | chr2_2:20215230-20215249 | None:intergenic | 35.0% | |
| ! | CATGTAAACTGACTCTAATC+TGG | - | chr2_2:20215402-20215421 | None:intergenic | 35.0% |
| GATTAGAGTCAGTTTACATG+TGG | + | chr2_2:20215402-20215421 | Msa0243290:intron | 35.0% | |
| CTTATCTTAGAGCCAGATTA+GGG | + | chr2_2:20215535-20215554 | Msa0243290:intron | 35.0% | |
| AAGAGGAAAAGAGAAAAGAG+AGG | - | chr2_2:20215578-20215597 | None:intergenic | 35.0% | |
| CCTCCTTAAGATTATTGAAG+AGG | - | chr2_2:20215595-20215614 | None:intergenic | 35.0% | |
| CCTCTTCAATAATCTTAAGG+AGG | + | chr2_2:20215592-20215611 | Msa0243290:intron | 35.0% | |
| !! | TAATCTTAAGGAGGTTTTGG+AGG | + | chr2_2:20215601-20215620 | Msa0243290:intron | 35.0% |
| !!! | AATCTTAAGGAGGTTTTGGA+GGG | + | chr2_2:20215602-20215621 | Msa0243290:intron | 35.0% |
| GAAAACTTACCTCCATATTG+CGG | - | chr2_2:20215668-20215687 | None:intergenic | 35.0% | |
| ! | GCAATATGGAGGTAAGTTTT+CGG | + | chr2_2:20215667-20215686 | Msa0243290:intron | 35.0% |
| ATCAATGTATTCGTTGTTGG+AGG | + | chr2_2:20215694-20215713 | Msa0243290:intron | 35.0% | |
| !! | GTTTTGTTAGACCCTAGATT+GGG | + | chr2_2:20215722-20215741 | Msa0243290:intron | 35.0% |
| AACATGTGTTTGTGTCTTTG+TGG | + | chr2_2:20215756-20215775 | Msa0243290:intron | 35.0% | |
| GAAAAGGCAATCACTTTCAA+AGG | - | chr2_2:20215794-20215813 | None:intergenic | 35.0% | |
| ! | TAGCAAGGTTAACTCTAGAA+GGG | - | chr2_2:20215841-20215860 | None:intergenic | 35.0% |
| TTAGCAAGGTTAACTCTAGA+AGG | - | chr2_2:20215842-20215861 | None:intergenic | 35.0% | |
| CAAGCACATTACATTTAGCA+AGG | - | chr2_2:20215856-20215875 | None:intergenic | 35.0% | |
| TCACAAAACACACATCTAGT+AGG | - | chr2_2:20215890-20215909 | None:intergenic | 35.0% | |
| !! | ATGTGTGTTTTGTGATAACG+CGG | + | chr2_2:20215895-20215914 | Msa0243290:intron | 35.0% |
| TTGGAATAAGAAGATCCACA+AGG | + | chr2_2:20216053-20216072 | Msa0243290:intron | 35.0% | |
| TGGAATAAGAAGATCCACAA+GGG | + | chr2_2:20216054-20216073 | Msa0243290:intron | 35.0% | |
| !!! | AGTGTTGACTCCATTTTTGA+GGG | + | chr2_2:20216155-20216174 | Msa0243290:intron | 35.0% |
| ATCCTCATGATTGTCTGAAT+AGG | + | chr2_2:20216255-20216274 | Msa0243290:intron | 35.0% | |
| TACCTATTCAGACAATCATG+AGG | - | chr2_2:20216260-20216279 | None:intergenic | 35.0% | |
| TTCTGTTTAATTGGGTGCAT+TGG | + | chr2_2:20216490-20216509 | Msa0243290:intron | 35.0% | |
| !!! | TTAATTGGGTGCATTGGTTT+TGG | + | chr2_2:20216496-20216515 | Msa0243290:intron | 35.0% |
| ATTATTACTCGTCTTGAGCT+CGG | + | chr2_2:20216685-20216704 | Msa0243290:intron | 35.0% | |
| ATAAGCATTCCTGTCAGATA+TGG | + | chr2_2:20216755-20216774 | Msa0243290:intron | 35.0% | |
| GGAATTAAATGTGACCCTAT+TGG | + | chr2_2:20217466-20217485 | Msa0243290:intron | 35.0% | |
| !!! | CATTGGTAAGTTTTGAATGC+AGG | + | chr2_2:20217569-20217588 | Msa0243290:intron | 35.0% |
| !! | TAATTGTTGATGATGATGCG+AGG | + | chr2_2:20217680-20217699 | Msa0243290:intron | 35.0% |
| !! | AATTGTTGATGATGATGCGA+GGG | + | chr2_2:20217681-20217700 | Msa0243290:intron | 35.0% |
| ! | TACGTCGTACACTGAATTTT+GGG | - | chr2_2:20217748-20217767 | None:intergenic | 35.0% |
| ! | TTACGTCGTACACTGAATTT+TGG | - | chr2_2:20217749-20217768 | None:intergenic | 35.0% |
| ! | TTGATTTTGCACAAGCTAGA+GGG | - | chr2_2:20217840-20217859 | None:intergenic | 35.0% |
| !! | ATTGATTTTGCACAAGCTAG+AGG | - | chr2_2:20217841-20217860 | None:intergenic | 35.0% |
| AGCAAGAGACAATTCATTTG+GGG | - | chr2_2:20218042-20218061 | None:intergenic | 35.0% | |
| GAGCAAGAGACAATTCATTT+GGG | - | chr2_2:20218043-20218062 | None:intergenic | 35.0% | |
| AGAGCAAGAGACAATTCATT+TGG | - | chr2_2:20218044-20218063 | None:intergenic | 35.0% | |
| TTATCTGTGTCTTGATGTAG+TGG | - | chr2_2:20218083-20218102 | None:intergenic | 35.0% | |
| CATCAAGACACAGATAATTG+AGG | + | chr2_2:20218086-20218105 | Msa0243290:intron | 35.0% | |
| !! | GATAATTGAGGCTTGTTTTC+AGG | + | chr2_2:20218098-20218117 | Msa0243290:intron | 35.0% |
| AATACTATCGAAAGATAGGC+TGG | + | chr2_2:20218208-20218227 | Msa0243290:intron | 35.0% | |
| CCAATATCATAAATTGGTGG+GGG | + | chr2_2:20218303-20218322 | Msa0243290:intron | 35.0% | |
| CAATTTCATTCGTTGGCAAA+AGG | + | chr2_2:20218522-20218541 | Msa0243290:intron | 35.0% | |
| CAATTTCTCCTCAACTTTGA+AGG | + | chr2_2:20218547-20218566 | Msa0243290:intron | 35.0% | |
| ATAGACAACCTTCAAAGTTG+AGG | - | chr2_2:20218558-20218577 | None:intergenic | 35.0% | |
| ! | AAAGGTATGCTGAAGATCTT+TGG | + | chr2_2:20218720-20218739 | Msa0243290:CDS | 35.0% |
| AAGGTATGCTGAAGATCTTT+GGG | + | chr2_2:20218721-20218740 | Msa0243290:CDS | 35.0% | |
| TTTCGCCATTTCGAATTTGG+GGG | - | chr2_2:20214194-20214213 | None:intergenic | 40.0% | |
| CTTTCGCCATTTCGAATTTG+GGG | - | chr2_2:20214195-20214214 | None:intergenic | 40.0% | |
| CTCTTTCGCCATTTCGAATT+TGG | - | chr2_2:20214197-20214216 | None:intergenic | 40.0% | |
| TTGTGAGAGTTGGGAAGAAT+GGG | - | chr2_2:20214280-20214299 | None:intergenic | 40.0% | |
| TTTGTGAGAGTTGGGAAGAA+TGG | - | chr2_2:20214281-20214300 | None:intergenic | 40.0% | |
| GGTTTGGATTTGTGAGAGTT+GGG | - | chr2_2:20214289-20214308 | None:intergenic | 40.0% | |
| AACTAACGTAACCCACCAAT+TGG | + | chr2_2:20214354-20214373 | Msa0243290:intron | 40.0% | |
| TGTTGCGACAAATAAAGCAG+CGG | + | chr2_2:20214485-20214504 | Msa0243290:CDS | 40.0% | |
| !! | AGCGGCTTTGGCTAAATTTT+TGG | + | chr2_2:20214503-20214522 | Msa0243290:CDS | 40.0% |
| AGGAAGTTGAAGGAACCTAA+TGG | + | chr2_2:20214528-20214547 | Msa0243290:CDS | 40.0% | |
| ! | GTTGAAGGAACCTAATGGAT+TGG | + | chr2_2:20214533-20214552 | Msa0243290:CDS | 40.0% |
| ACTTGTAGAAACAGCCTGTT+TGG | - | chr2_2:20214601-20214620 | None:intergenic | 40.0% | |
| !! | CAGGCTGTTTCTACAAGTAA+TGG | + | chr2_2:20214603-20214622 | Msa0243290:intron | 40.0% |
| TTGTGGTAACTGGTAAGACA+TGG | + | chr2_2:20215199-20215218 | Msa0243290:intron | 40.0% | |
| CAAACAAGTAACAACCAAGC+AGG | - | chr2_2:20215272-20215291 | None:intergenic | 40.0% | |
| ! | CTAACAACGGGTTTAAATGG+GGG | - | chr2_2:20215447-20215466 | None:intergenic | 40.0% |
| ! | CCTAACAACGGGTTTAAATG+GGG | - | chr2_2:20215448-20215467 | None:intergenic | 40.0% |
| ! | CCCTAACAACGGGTTTAAAT+GGG | - | chr2_2:20215449-20215468 | None:intergenic | 40.0% |
| CCCATTTAAACCCGTTGTTA+GGG | + | chr2_2:20215446-20215465 | Msa0243290:intron | 40.0% | |
| CATATCCTAGAGCCAGATTA+GGG | + | chr2_2:20215495-20215514 | Msa0243290:intron | 40.0% | |
| !! | CCTAATCTGGCTCTAAGATA+AGG | - | chr2_2:20215537-20215556 | None:intergenic | 40.0% |
| CCTTATCTTAGAGCCAGATT+AGG | + | chr2_2:20215534-20215553 | Msa0243290:intron | 40.0% | |
| !!! | ATCTTAAGGAGGTTTTGGAG+GGG | + | chr2_2:20215603-20215622 | Msa0243290:intron | 40.0% |
| ! | GTCGGATGTAGAGGAATTTT+GGG | + | chr2_2:20215634-20215653 | Msa0243290:intron | 40.0% |
| ! | TCGGATGTAGAGGAATTTTG+GGG | + | chr2_2:20215635-20215654 | Msa0243290:intron | 40.0% |
| !!! | ATGTAGAGGAATTTTGGGGT+TGG | + | chr2_2:20215639-20215658 | Msa0243290:intron | 40.0% |
| GTATTCGTTGTTGGAGGATT+TGG | + | chr2_2:20215700-20215719 | Msa0243290:intron | 40.0% | |
| !!! | GGTTTTGTTAGACCCTAGAT+TGG | + | chr2_2:20215721-20215740 | Msa0243290:intron | 40.0% |
| GGAATAAGAAGATCCACAAG+GGG | + | chr2_2:20216055-20216074 | Msa0243290:intron | 40.0% | |
| CTATTAACCAATACCCCTTG+TGG | - | chr2_2:20216071-20216090 | None:intergenic | 40.0% | |
| !! | CACAAGGGGTATTGGTTAAT+AGG | + | chr2_2:20216069-20216088 | Msa0243290:intron | 40.0% |
| ! | TAATAGGCACGTGGCAATTT+TGG | + | chr2_2:20216085-20216104 | Msa0243290:intron | 40.0% |
| !! | ACGTGGCAATTTTGGTACTT+TGG | + | chr2_2:20216093-20216112 | Msa0243290:intron | 40.0% |
| !!! | GAGTGTTGACTCCATTTTTG+AGG | + | chr2_2:20216154-20216173 | Msa0243290:intron | 40.0% |
| !!! | GTGTTGACTCCATTTTTGAG+GGG | + | chr2_2:20216156-20216175 | Msa0243290:intron | 40.0% |
| !! | CTCCATTTTTGAGGGGATTA+AGG | + | chr2_2:20216163-20216182 | Msa0243290:intron | 40.0% |
| GTCTGAATAGGTAAGTTTGG+TGG | + | chr2_2:20216267-20216286 | Msa0243290:intron | 40.0% | |
| TTTGAGTCTTTGCTGCTGTT+TGG | + | chr2_2:20216395-20216414 | Msa0243290:intron | 40.0% | |
| TGGCAGCTGTTCTGTTTAAT+TGG | + | chr2_2:20216481-20216500 | Msa0243290:intron | 40.0% | |
| GGCAGCTGTTCTGTTTAATT+GGG | + | chr2_2:20216482-20216501 | Msa0243290:intron | 40.0% | |
| !! | TTTGCCTAATGGTGGATGTA+GGG | + | chr2_2:20216540-20216559 | Msa0243290:intron | 40.0% |
| AGGATGACAAAGATGCAGAT+AGG | + | chr2_2:20217272-20217291 | Msa0243290:intron | 40.0% | |
| GGATGACAAAGATGCAGATA+GGG | + | chr2_2:20217273-20217292 | Msa0243290:intron | 40.0% | |
| !! | GGGTCTAGTTTCCTTTTCTT+AGG | + | chr2_2:20217445-20217464 | Msa0243290:intron | 40.0% |
| CCCCCACCAATTTATGATAT+TGG | - | chr2_2:20218306-20218325 | None:intergenic | 40.0% | |
| ACGGTGACAATTTCATTCGT+TGG | + | chr2_2:20218515-20218534 | Msa0243290:intron | 40.0% | |
| ! | TTATCTTTATCCACTGGCCT+CGG | - | chr2_2:20218588-20218607 | None:intergenic | 40.0% |
| TCCATATGACACATTCCCAA+CGG | + | chr2_2:20218662-20218681 | Msa0243290:intron | 40.0% | |
| ! | TTTGGGACAAACTTGAAGCA+AGG | + | chr2_2:20218738-20218757 | Msa0243290:CDS | 40.0% |
| GGGTTTGGATTTGTGAGAGT+TGG | - | chr2_2:20214290-20214309 | None:intergenic | 45.0% | |
| ACTCTCACAAATCCAAACCC+AGG | + | chr2_2:20214290-20214309 | Msa0243290:CDS | 45.0% | |
| AAACCCAGGTACGCTTCTAA+GGG | + | chr2_2:20214304-20214323 | Msa0243290:intron | 45.0% | |
| ! | AAACCCTTAGAAGCGTACCT+GGG | - | chr2_2:20214310-20214329 | None:intergenic | 45.0% |
| ! | AAAACCCTTAGAAGCGTACC+TGG | - | chr2_2:20214311-20214330 | None:intergenic | 45.0% |
| !! | GCTGCTTTATTTGTCGCAAC+AGG | - | chr2_2:20214486-20214505 | None:intergenic | 45.0% |
| GACAAATAAAGCAGCGGCTT+TGG | + | chr2_2:20214491-20214510 | Msa0243290:CDS | 45.0% | |
| GTATCGGACACGCATCATAT+CGG | - | chr2_2:20214839-20214858 | None:intergenic | 45.0% | |
| ATGGGGGATAAGAGAGAAGA+GGG | - | chr2_2:20215431-20215450 | None:intergenic | 45.0% | |
| AATGGGGGATAAGAGAGAAG+AGG | - | chr2_2:20215432-20215451 | None:intergenic | 45.0% | |
| CCCCATTTAAACCCGTTGTT+AGG | + | chr2_2:20215445-20215464 | Msa0243290:intron | 45.0% | |
| ! | GCCCTAACAACGGGTTTAAA+TGG | - | chr2_2:20215450-20215469 | None:intergenic | 45.0% |
| CCATGAATTGCCCTAACAAC+GGG | - | chr2_2:20215459-20215478 | None:intergenic | 45.0% | |
| GCCATGAATTGCCCTAACAA+CGG | - | chr2_2:20215460-20215479 | None:intergenic | 45.0% | |
| !! | CCTAATCTGGCTCTAGGATA+TGG | - | chr2_2:20215497-20215516 | None:intergenic | 45.0% |
| CCATATCCTAGAGCCAGATT+AGG | + | chr2_2:20215494-20215513 | Msa0243290:intron | 45.0% | |
| TGCATGATGAGTCCCTAATC+TGG | - | chr2_2:20215550-20215569 | None:intergenic | 45.0% | |
| !!! | TCTTAAGGAGGTTTTGGAGG+GGG | + | chr2_2:20215604-20215623 | Msa0243290:intron | 45.0% |
| ! | GGTCGGATGTAGAGGAATTT+TGG | + | chr2_2:20215633-20215652 | Msa0243290:intron | 45.0% |
| TGTGTCTTTGTGGAAAAGCC+CGG | + | chr2_2:20215766-20215785 | Msa0243290:intron | 45.0% | |
| ACGAAGGAGCTTGCAAGAAA+AGG | - | chr2_2:20215810-20215829 | None:intergenic | 45.0% | |
| TAGAAGGGATGCGATTACGA+AGG | - | chr2_2:20215826-20215845 | None:intergenic | 45.0% | |
| !! | TGTGTTTTGTGATAACGCGG+AGG | + | chr2_2:20215898-20215917 | Msa0243290:intron | 45.0% |
| TTGCATCGCAATGTCTCGTT+TGG | + | chr2_2:20215943-20215962 | Msa0243290:intron | 45.0% | |
| GACTGTTGTCCAAGGTGAAT+TGG | + | chr2_2:20215965-20215984 | Msa0243290:intron | 45.0% | |
| TTGTCCAAGGTGAATTGGCT+AGG | + | chr2_2:20215970-20215989 | Msa0243290:intron | 45.0% | |
| CAAGACTCGCCAATCAAACA+TGG | - | chr2_2:20216036-20216055 | None:intergenic | 45.0% | |
| CATGTTTGATTGGCGAGTCT+TGG | + | chr2_2:20216034-20216053 | Msa0243290:intron | 45.0% | |
| ! | AGAAGATCCACAAGGGGTAT+TGG | + | chr2_2:20216061-20216080 | Msa0243290:intron | 45.0% |
| !! | GGTATTGGTTAATAGGCACG+TGG | + | chr2_2:20216076-20216095 | Msa0243290:intron | 45.0% |
| CGCCTTAATCCCCTCAAAAA+TGG | - | chr2_2:20216168-20216187 | None:intergenic | 45.0% | |
| AGGGGATTAAGGCGATATCA+GGG | + | chr2_2:20216174-20216193 | Msa0243290:intron | 45.0% | |
| TCCAACACCATTCACAGAAG+AGG | - | chr2_2:20216235-20216254 | None:intergenic | 45.0% | |
| !! | AGCCTTTGGTGTTTGCCTAA+TGG | + | chr2_2:20216529-20216548 | Msa0243290:intron | 45.0% |
| CACCATTAGGCAAACACCAA+AGG | - | chr2_2:20216534-20216553 | None:intergenic | 45.0% | |
| !! | CTTTGGTGTTTGCCTAATGG+TGG | + | chr2_2:20216532-20216551 | Msa0243290:intron | 45.0% |
| !! | GTTTGCCTAATGGTGGATGT+AGG | + | chr2_2:20216539-20216558 | Msa0243290:intron | 45.0% |
| !! | TTGCCTAATGGTGGATGTAG+GGG | + | chr2_2:20216541-20216560 | Msa0243290:intron | 45.0% |
| CGCAAGACCGAACAAATACA+AGG | - | chr2_2:20216638-20216657 | None:intergenic | 45.0% | |
| ATCCGGCATGTAGAATCCTT+TGG | + | chr2_2:20216938-20216957 | Msa0243290:CDS | 45.0% | |
| GGAACAAAATGATCTCCCTG+CGG | + | chr2_2:20216982-20217001 | Msa0243290:CDS | 45.0% | |
| AAATGATCTCCCTGCGGTAA+AGG | + | chr2_2:20216988-20217007 | Msa0243290:CDS | 45.0% | |
| TCTTGCATTCCTTTACCGCA+GGG | - | chr2_2:20217000-20217019 | None:intergenic | 45.0% | |
| TTCTTGCATTCCTTTACCGC+AGG | - | chr2_2:20217001-20217020 | None:intergenic | 45.0% | |
| CCATATGACACATTCCCAAC+GGG | + | chr2_2:20218663-20218682 | Msa0243290:intron | 45.0% | |
| CATATGACACATTCCCAACG+GGG | + | chr2_2:20218664-20218683 | Msa0243290:intron | 45.0% | |
| AAAGAATCTGACACCCCGTT+GGG | - | chr2_2:20218680-20218699 | None:intergenic | 45.0% | |
| GAGTTGGGAAGAATGGGAAG+AGG | - | chr2_2:20214274-20214293 | None:intergenic | 50.0% | |
| ! | CTTAGAAGCGTACCTGGGTT+TGG | - | chr2_2:20214305-20214324 | None:intergenic | 50.0% |
| CAAACCCAGGTACGCTTCTA+AGG | + | chr2_2:20214303-20214322 | Msa0243290:intron | 50.0% | |
| !! | GTGGAATGATGGGTTTGACC+TGG | + | chr2_2:20214785-20214804 | Msa0243290:intron | 50.0% |
| CATGGTTGAGCTTTCCTGCT+TGG | + | chr2_2:20215255-20215274 | Msa0243290:intron | 50.0% | |
| TGGGGGATAAGAGAGAAGAG+GGG | - | chr2_2:20215430-20215449 | None:intergenic | 50.0% | |
| CCCGTTGTTAGGGCAATTCA+TGG | + | chr2_2:20215456-20215475 | Msa0243290:intron | 50.0% | |
| GGATATGGTGTCTGCATGTG+TGG | - | chr2_2:20215482-20215501 | None:intergenic | 50.0% | |
| GTTAGACCCTAGATTGGGTG+AGG | + | chr2_2:20215727-20215746 | Msa0243290:intron | 50.0% | |
| GTGTCTTTGTGGAAAAGCCC+GGG | + | chr2_2:20215767-20215786 | Msa0243290:intron | 50.0% | |
| TGTCTTTGTGGAAAAGCCCG+GGG | + | chr2_2:20215768-20215787 | Msa0243290:intron | 50.0% | |
| CAATCACTTTCAAAGGCCCC+GGG | - | chr2_2:20215787-20215806 | None:intergenic | 50.0% | |
| GCAATCACTTTCAAAGGCCC+CGG | - | chr2_2:20215788-20215807 | None:intergenic | 50.0% | |
| CTCGTTTGGACTGTTGTCCA+AGG | + | chr2_2:20215957-20215976 | Msa0243290:intron | 50.0% | |
| GATGCCTAGCCAATTCACCT+TGG | - | chr2_2:20215977-20215996 | None:intergenic | 50.0% | |
| GAGGGGATTAAGGCGATATC+AGG | + | chr2_2:20216173-20216192 | Msa0243290:intron | 50.0% | |
| GGATTAAGGCGATATCAGGG+AGG | + | chr2_2:20216177-20216196 | Msa0243290:intron | 50.0% | |
| TTAAGGCGATATCAGGGAGG+TGG | + | chr2_2:20216180-20216199 | Msa0243290:intron | 50.0% | |
| ATATCAGGGAGGTGGCATCT+TGG | + | chr2_2:20216188-20216207 | Msa0243290:intron | 50.0% | |
| CATTCACAGAAGAGGCAAGG+AGG | - | chr2_2:20216227-20216246 | None:intergenic | 50.0% | |
| CTCCTTGCCTCTTCTGTGAA+TGG | + | chr2_2:20216225-20216244 | Msa0243290:intron | 50.0% | |
| CACCATTCACAGAAGAGGCA+AGG | - | chr2_2:20216230-20216249 | None:intergenic | 50.0% | |
| GCCTCTTCTGTGAATGGTGT+TGG | + | chr2_2:20216231-20216250 | Msa0243290:intron | 50.0% | |
| !! | TTTGGTGGTGCTGTAGCTTC+AGG | + | chr2_2:20216282-20216301 | Msa0243290:intron | 50.0% |
| !!! | GCGTTTGGGGGTTGTTTTTC+TGG | + | chr2_2:20216439-20216458 | Msa0243290:intron | 50.0% |
| !!! | TGGGGGTTGTTTTTCTGGTC+TGG | + | chr2_2:20216444-20216463 | Msa0243290:intron | 50.0% |
| !!! | TGGGTGCATTGGTTTTGGTC+TGG | + | chr2_2:20216501-20216520 | Msa0243290:intron | 50.0% |
| !!! | GGGTGCATTGGTTTTGGTCT+GGG | + | chr2_2:20216502-20216521 | Msa0243290:intron | 50.0% |
| GGGTGCTTTGATGTGCCAAT+TGG | + | chr2_2:20216561-20216580 | Msa0243290:intron | 50.0% | |
| CGCCAAAGGATTCTACATGC+CGG | - | chr2_2:20216943-20216962 | None:intergenic | 50.0% | |
| ACTTGCATCTGAGTCGCCAA+AGG | - | chr2_2:20216957-20216976 | None:intergenic | 50.0% | |
| CGACTCAGATGCAAGTGAAG+AGG | + | chr2_2:20216961-20216980 | Msa0243290:CDS | 50.0% | |
| ATGTGAGAACAGCTGAGCAG+TGG | + | chr2_2:20217774-20217793 | Msa0243290:intron | 50.0% | |
| TGTGAGAACAGCTGAGCAGT+GGG | + | chr2_2:20217775-20217794 | Msa0243290:intron | 50.0% | |
| GGTTGTCTATGTGTTCTCCG+AGG | + | chr2_2:20218568-20218587 | Msa0243290:intron | 50.0% | |
| CCCGTTGGGAATGTGTCATA+TGG | - | chr2_2:20218666-20218685 | None:intergenic | 50.0% | |
| CAAAGAATCTGACACCCCGT+TGG | - | chr2_2:20218681-20218700 | None:intergenic | 50.0% | |
| ! | TGGTGCAGATTGGCTCATCC+TGG | + | chr2_2:20214456-20214475 | Msa0243290:intron | 55.0% |
| ! | TGCAGATTGGCTCATCCTGG+TGG | + | chr2_2:20214459-20214478 | Msa0243290:intron | 55.0% |
| TTTGTCGCAACAGGTCCACC+AGG | - | chr2_2:20214477-20214496 | None:intergenic | 55.0% | |
| !! | TGCGTCCCTAATCTGGCTCT+AGG | - | chr2_2:20215503-20215522 | None:intergenic | 55.0% |
| TGCATGCTGCGTCCCTAATC+TGG | - | chr2_2:20215510-20215529 | None:intergenic | 55.0% | |
| !!! | AGGTTTTGGAGGGGGTGAGA+TGG | + | chr2_2:20215612-20215631 | Msa0243290:intron | 55.0% |
| TTTGGAGGGGGTGAGATGGT+CGG | + | chr2_2:20215616-20215635 | Msa0243290:intron | 55.0% | |
| GGTGAGATGGTCGGATGTAG+AGG | + | chr2_2:20215625-20215644 | Msa0243290:intron | 55.0% | |
| !! | TGGGGTTGGTGTCCGCAATA+TGG | + | chr2_2:20215653-20215672 | Msa0243290:intron | 55.0% |
| ! | GGTTGGTGTCCGCAATATGG+AGG | + | chr2_2:20215656-20215675 | Msa0243290:intron | 55.0% |
| AGACCCTAGATTGGGTGAGG+CGG | + | chr2_2:20215730-20215749 | Msa0243290:intron | 55.0% | |
| GCTGTAGCTTCAGGCACTCT+TGG | + | chr2_2:20216291-20216310 | Msa0243290:intron | 55.0% | |
| TAGCTTCAGGCACTCTTGGC+AGG | + | chr2_2:20216295-20216314 | Msa0243290:intron | 55.0% | |
| AGCTTCAGGCACTCTTGGCA+GGG | + | chr2_2:20216296-20216315 | Msa0243290:intron | 55.0% | |
| ! | GTGTGTTGGTCTGCTGTGTC+TGG | + | chr2_2:20216319-20216338 | Msa0243290:intron | 55.0% |
| ! | TGTTGGTCTGCTGTGTCTGG+AGG | + | chr2_2:20216322-20216341 | Msa0243290:intron | 55.0% |
| CTGCTGTGTCTGGAGGTTTC+AGG | + | chr2_2:20216329-20216348 | Msa0243290:intron | 55.0% | |
| ! | GTGTCTGGAGGTTTCAGGTC+TGG | + | chr2_2:20216334-20216353 | Msa0243290:intron | 55.0% |
| TCTGCTGAGCAGTGTGCGTT+TGG | + | chr2_2:20216424-20216443 | Msa0243290:intron | 55.0% | |
| CTGCTGAGCAGTGTGCGTTT+GGG | + | chr2_2:20216425-20216444 | Msa0243290:intron | 55.0% | |
| TGCTGAGCAGTGTGCGTTTG+GGG | + | chr2_2:20216426-20216445 | Msa0243290:intron | 55.0% | |
| TTGGTCTGGGCAGTAGCCTT+TGG | + | chr2_2:20216515-20216534 | Msa0243290:intron | 55.0% | |
| GCACCCCTACATCCACCATT+AGG | - | chr2_2:20216547-20216566 | None:intergenic | 55.0% | |
| ACCGAGCTCAAGACGAGCAA+GGG | - | chr2_2:20216662-20216681 | None:intergenic | 55.0% | |
| AACCGAGCTCAAGACGAGCA+AGG | - | chr2_2:20216663-20216682 | None:intergenic | 55.0% | |
| GCAAGTGGCAAACAGCAGTC+GGG | - | chr2_2:20217803-20217822 | None:intergenic | 55.0% | |
| GGCAAGTGGCAAACAGCAGT+CGG | - | chr2_2:20217804-20217823 | None:intergenic | 55.0% | |
| ! | ACTGCTGTTTGCCACTTGCC+AGG | + | chr2_2:20217804-20217823 | Msa0243290:intron | 55.0% |
| ! | CTGCTGTTTGCCACTTGCCA+GGG | + | chr2_2:20217805-20217824 | Msa0243290:intron | 55.0% |
| TATGTGTTCTCCGAGGCCAG+TGG | + | chr2_2:20218575-20218594 | Msa0243290:intron | 55.0% | |
| GATGAACGACGCGCACTTCG+TGG | + | chr2_2:20214235-20214254 | Msa0243290:CDS | 60.0% | |
| CCTCCGCCTCACCCAATCTA+GGG | - | chr2_2:20215736-20215755 | None:intergenic | 60.0% | |
| TCCTCCGCCTCACCCAATCT+AGG | - | chr2_2:20215737-20215756 | None:intergenic | 60.0% | |
| GCTTCAGGCACTCTTGGCAG+GGG | + | chr2_2:20216297-20216316 | Msa0243290:intron | 60.0% | |
| ! | CACTCTTGGCAGGGGTGTGT+TGG | + | chr2_2:20216305-20216324 | Msa0243290:intron | 60.0% |
| GCTGAGCAGTGTGCGTTTGG+GGG | + | chr2_2:20216427-20216446 | Msa0243290:intron | 60.0% | |
| ACAGAACAGCTGCCAGCCGA+GGG | - | chr2_2:20216476-20216495 | None:intergenic | 60.0% | |
| AACAGAACAGCTGCCAGCCG+AGG | - | chr2_2:20216477-20216496 | None:intergenic | 60.0% | |
| CCGAGCTCAAGACGAGCAAG+GGG | - | chr2_2:20216661-20216680 | None:intergenic | 60.0% | |
| CCCCTTGCTCGTCTTGAGCT+CGG | + | chr2_2:20216658-20216677 | Msa0243290:intron | 60.0% | |
| CCCTAGATTGGGTGAGGCGG+AGG | + | chr2_2:20215733-20215752 | Msa0243290:intron | 65.0% | |
| TCTGGTCTGGCCGTGTCCCT+CGG | + | chr2_2:20216457-20216476 | Msa0243290:intron | 65.0% | |
| ! | TTGCCACTTGCCAGGGCGCT+AGG | + | chr2_2:20217812-20217831 | Msa0243290:intron | 65.0% |
| CAGCTGCCAGCCGAGGGACA+CGG | - | chr2_2:20216470-20216489 | None:intergenic | 70.0% | |
| GAGCCTAGCGCCCTGGCAAG+TGG | - | chr2_2:20217818-20217837 | None:intergenic | 70.0% | |
| CTAGAGGGAGCCTAGCGCCC+TGG | - | chr2_2:20217825-20217844 | None:intergenic | 70.0% | |
| GTCTGGCCGTGTCCCTCGGC+TGG | + | chr2_2:20216461-20216480 | Msa0243290:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 20214125 | 20218781 | 20214125 | ID=Msa0243290;Name=Msa0243290 |
| chr2_2 | mRNA | 20214125 | 20218781 | 20214125 | ID=Msa0243290-mRNA-1;Parent=Msa0243290;Name=Msa0243290-mRNA-1;_AED=0.27;_eAED=0.27;_QI=80|0.66|0.75|1|1|0.75|4|0|161 |
| chr2_2 | exon | 20214125 | 20214311 | 20214125 | ID=Msa0243290-mRNA-1:exon:8163;Parent=Msa0243290-mRNA-1 |
| chr2_2 | exon | 20214464 | 20214618 | 20214464 | ID=Msa0243290-mRNA-1:exon:8164;Parent=Msa0243290-mRNA-1 |
| chr2_2 | exon | 20216912 | 20217066 | 20216912 | ID=Msa0243290-mRNA-1:exon:8165;Parent=Msa0243290-mRNA-1 |
| chr2_2 | exon | 20218716 | 20218781 | 20218716 | ID=Msa0243290-mRNA-1:exon:8166;Parent=Msa0243290-mRNA-1 |
| chr2_2 | five_prime_UTR | 20214125 | 20214204 | 20214125 | ID=Msa0243290-mRNA-1:five_prime_utr;Parent=Msa0243290-mRNA-1 |
| chr2_2 | CDS | 20214205 | 20214311 | 20214205 | ID=Msa0243290-mRNA-1:cds;Parent=Msa0243290-mRNA-1 |
| chr2_2 | CDS | 20214464 | 20214618 | 20214464 | ID=Msa0243290-mRNA-1:cds;Parent=Msa0243290-mRNA-1 |
| chr2_2 | CDS | 20216912 | 20217066 | 20216912 | ID=Msa0243290-mRNA-1:cds;Parent=Msa0243290-mRNA-1 |
| chr2_2 | CDS | 20218716 | 20218781 | 20218716 | ID=Msa0243290-mRNA-1:cds;Parent=Msa0243290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
