AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1031770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031770 MtrunA17_Chr7g0253361 97.959 98 2 0 2 99 120 217 2.09e-66 198
Msa1031770 MtrunA17_Chr1g0151811 74.118 85 21 1 16 99 209 293 1.21e-39 132
Msa1031770 MtrunA17_Chr8g0369051 62.887 97 31 2 8 99 157 253 5.57e-33 114
Msa1031770 MtrunA17_Chr6g0484191 43.662 71 36 1 7 77 161 227 1.38e-13 63.5
Msa1031770 MtrunA17_Chr5g0423331 39.394 66 40 0 18 83 154 219 5.81e-13 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031770 AT1G55340.2 83.146 89 15 0 11 99 107 195 1.75e-50 158
Msa1031770 AT1G55340.1 83.146 89 15 0 11 99 117 205 2.05e-50 158
Msa1031770 AT3G03880.1 69.072 97 25 2 8 99 97 193 5.94e-41 134
Msa1031770 AT4G20300.2 60.417 96 34 3 8 99 257 352 4.83e-30 109
Msa1031770 AT4G20300.1 64.103 78 26 2 8 83 257 334 3.18e-26 99.4
Msa1031770 AT1G25370.2 45.000 60 33 0 18 77 204 263 1.42e-11 58.9
Msa1031770 AT1G25370.1 45.000 60 33 0 18 77 204 263 1.42e-11 58.9
Msa1031770 AT3G60410.1 45.000 60 33 0 18 77 263 322 3.40e-11 58.2
Msa1031770 AT3G60410.2 45.000 60 33 0 18 77 263 322 3.40e-11 58.2
Msa1031770 AT3G60410.3 45.000 60 33 0 18 77 263 322 3.40e-11 58.2

Find 24 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAGAATCTAAACTATTT+TGG 0.102004 7_1:-66474637 Msa1031770:three_prime_UTR
TAAGCTTCTTTGGATGATTT+TGG 0.165257 7_1:+66475074 None:intergenic
AACTTACCAATAAGCTTCTT+TGG 0.237998 7_1:+66475064 None:intergenic
AATCATCCAAAGAAGCTTAT+TGG 0.258024 7_1:-66475070 Msa1031770:intron
CTTCATTGATTTGATTGAAA+TGG 0.283720 7_1:+66474503 None:intergenic
AGGAAGCTTACAACCTTTCA+TGG 0.340391 7_1:+66475116 None:intergenic
GTCAAGAGAGATATGAAGTT+AGG 0.367836 7_1:-66474882 Msa1031770:CDS
TATGCAAATATTTGAGAGGT+TGG 0.398405 7_1:-66474673 Msa1031770:three_prime_UTR
TCAAGAGAGATATGAAGTTA+GGG 0.417350 7_1:-66474881 Msa1031770:CDS
TGTTTACAGTTGGTAAGTCC+TGG 0.420464 7_1:-66474925 Msa1031770:intron
CCCATAGCCTTCAATCCTCT+TGG 0.424567 7_1:+66474731 None:intergenic
CCAAGAGGATTGAAGGCTAT+GGG 0.481069 7_1:-66474731 Msa1031770:CDS
GCAGAGGCCAAGAGGATTGA+AGG 0.486507 7_1:-66474738 Msa1031770:intron
TTGATTTGATTGAAATGGAT+CGG 0.493315 7_1:+66474508 None:intergenic
GCCAAGAGGATTGAAGGCTA+TGG 0.494932 7_1:-66474732 Msa1031770:CDS
GGAGAAGAAAAGTAACAAGA+AGG 0.520874 7_1:-66474860 Msa1031770:intron
GAGAGAGTAATGTAAAGCTT+AGG 0.521687 7_1:+66475168 None:intergenic
ATTGAAGGCTATGGGGAGTG+TGG 0.522393 7_1:-66474723 Msa1031770:CDS
GGCACTTGCGATGTTATCAA+TGG 0.530662 7_1:-66475213 Msa1031770:CDS
ATATCAGTCAACCATGCTCC+AGG 0.532665 7_1:+66474907 None:intergenic
AGTTGGTAAGTCCTGGAGCA+TGG 0.569217 7_1:-66474918 Msa1031770:CDS
TTTGGGAAGATGGAAGATGA+TGG 0.573120 7_1:-66474619 Msa1031770:three_prime_UTR
TTATTATGCAAATATTTGAG+AGG 0.616149 7_1:-66474677 Msa1031770:three_prime_UTR
CAAGAGGATTGAAGGCTATG+GGG 0.656812 7_1:-66474730 Msa1031770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATGTTGTTTTTATTA+TGG - chr7_1:66475407-66475426 Msa1031770:intron 10.0%
!! ATTAAGAGATAAAATAAAAA+AGG + chr7_1:66475631-66475650 None:intergenic 10.0%
!!! TTTTTATGTTGTTTTTATTA+TGG - chr7_1:66475407-66475426 Msa1031770:intron 10.0%
!! ATTAAGAGATAAAATAAAAA+AGG + chr7_1:66475631-66475650 None:intergenic 10.0%
!! AATAATCTTACTAATATCAT+AGG - chr7_1:66474772-66474791 Msa1031770:intron 15.0%
!!! TTGTTTTTATTATGGTTAAT+TGG - chr7_1:66475415-66475434 Msa1031770:intron 15.0%
!!! TGTTTTTATTATGGTTAATT+GGG - chr7_1:66475416-66475435 Msa1031770:intron 15.0%
!! AATAATCTTACTAATATCAT+AGG - chr7_1:66474772-66474791 Msa1031770:intron 15.0%
!!! TTGTTTTTATTATGGTTAAT+TGG - chr7_1:66475415-66475434 Msa1031770:intron 15.0%
!!! TGTTTTTATTATGGTTAATT+GGG - chr7_1:66475416-66475435 Msa1031770:intron 15.0%
!!! AATTAATGTAGATAGAGTTT+TGG + chr7_1:66474669-66474688 None:intergenic 20.0%
!! TTATTATGCAAATATTTGAG+AGG - chr7_1:66475749-66475768 Msa1031770:intron 20.0%
!!! ACAAAGAATCTAAACTATTT+TGG - chr7_1:66475789-66475808 Msa1031770:intron 20.0%
!!! CAAAGAATCTAAACTATTTT+GGG - chr7_1:66475790-66475809 Msa1031770:intron 20.0%
!!! ATCTCTCTAATTTTACTTTA+TGG - chr7_1:66475992-66476011 Msa1031770:intron 20.0%
!!! AATTAATGTAGATAGAGTTT+TGG + chr7_1:66474669-66474688 None:intergenic 20.0%
!! TTATTATGCAAATATTTGAG+AGG - chr7_1:66475749-66475768 Msa1031770:intron 20.0%
!!! ACAAAGAATCTAAACTATTT+TGG - chr7_1:66475789-66475808 Msa1031770:intron 20.0%
!!! CAAAGAATCTAAACTATTTT+GGG - chr7_1:66475790-66475809 Msa1031770:intron 20.0%
!!! ATCTCTCTAATTTTACTTTA+TGG - chr7_1:66475992-66476011 Msa1031770:intron 20.0%
!!! TCCTTTTTTATTCAGAAATC+AGG - chr7_1:66474725-66474744 Msa1031770:CDS 25.0%
! TCCTGATTTCTGAATAAAAA+AGG + chr7_1:66474729-66474748 None:intergenic 25.0%
!! TTTTCACTGGTATATTGTTA+GGG + chr7_1:66474884-66474903 None:intergenic 25.0%
!!! CAATTTACACCAACATTTTT+TGG - chr7_1:66474912-66474931 Msa1031770:CDS 25.0%
! TTATTATGGTTAATTGGGTT+TGG - chr7_1:66475421-66475440 Msa1031770:intron 25.0%
!! TTGATTTGATTGAAATGGAT+CGG + chr7_1:66475921-66475940 None:intergenic 25.0%
!!! CTTCATTGATTTGATTGAAA+TGG + chr7_1:66475926-66475945 None:intergenic 25.0%
!!! TCCTTTTTTATTCAGAAATC+AGG - chr7_1:66474725-66474744 Msa1031770:CDS 25.0%
! TCCTGATTTCTGAATAAAAA+AGG + chr7_1:66474729-66474748 None:intergenic 25.0%
!! TTTTCACTGGTATATTGTTA+GGG + chr7_1:66474884-66474903 None:intergenic 25.0%
!!! CAATTTACACCAACATTTTT+TGG - chr7_1:66474912-66474931 Msa1031770:CDS 25.0%
! TTATTATGGTTAATTGGGTT+TGG - chr7_1:66475421-66475440 Msa1031770:intron 25.0%
!! TTGATTTGATTGAAATGGAT+CGG + chr7_1:66475921-66475940 None:intergenic 25.0%
!!! CTTCATTGATTTGATTGAAA+TGG + chr7_1:66475926-66475945 None:intergenic 25.0%
TAAGAGATATATAGCATTGC+AGG - chr7_1:66474497-66474516 Msa1031770:three_prime_UTR 30.0%
TATGTTAACTATGTTTGCCT+TGG - chr7_1:66474558-66474577 Msa1031770:three_prime_UTR 30.0%
TTCTGAATAAAAAAGGAGAG+TGG + chr7_1:66474722-66474741 None:intergenic 30.0%
! GTTTTCACTGGTATATTGTT+AGG + chr7_1:66474885-66474904 None:intergenic 30.0%
! AATTGAAGTGTAGTTTTCAC+TGG + chr7_1:66474897-66474916 None:intergenic 30.0%
GAGAAGTTACCAAAAAATGT+TGG + chr7_1:66474924-66474943 None:intergenic 30.0%
TTGTAATTAGCTATGAAGCA+CGG - chr7_1:66475064-66475083 Msa1031770:intron 30.0%
! TAAGCTTCTTTGGATGATTT+TGG + chr7_1:66475355-66475374 None:intergenic 30.0%
AATCATCCAAAGAAGCTTAT+TGG - chr7_1:66475356-66475375 Msa1031770:intron 30.0%
AACTTACCAATAAGCTTCTT+TGG + chr7_1:66475365-66475384 None:intergenic 30.0%
TCAAGAGAGATATGAAGTTA+GGG - chr7_1:66475545-66475564 Msa1031770:intron 30.0%
AAAAGTAACAAGAAGGTAAG+TGG - chr7_1:66475573-66475592 Msa1031770:intron 30.0%
TATGCAAATATTTGAGAGGT+TGG - chr7_1:66475753-66475772 Msa1031770:intron 30.0%
!! TCTAAACTATTTTGGGAAGA+TGG - chr7_1:66475797-66475816 Msa1031770:intron 30.0%
TAAGAGATATATAGCATTGC+AGG - chr7_1:66474497-66474516 Msa1031770:three_prime_UTR 30.0%
TATGTTAACTATGTTTGCCT+TGG - chr7_1:66474558-66474577 Msa1031770:three_prime_UTR 30.0%
TTCTGAATAAAAAAGGAGAG+TGG + chr7_1:66474722-66474741 None:intergenic 30.0%
! GTTTTCACTGGTATATTGTT+AGG + chr7_1:66474885-66474904 None:intergenic 30.0%
! AATTGAAGTGTAGTTTTCAC+TGG + chr7_1:66474897-66474916 None:intergenic 30.0%
GAGAAGTTACCAAAAAATGT+TGG + chr7_1:66474924-66474943 None:intergenic 30.0%
TTGTAATTAGCTATGAAGCA+CGG - chr7_1:66475064-66475083 Msa1031770:intron 30.0%
! TAAGCTTCTTTGGATGATTT+TGG + chr7_1:66475355-66475374 None:intergenic 30.0%
AATCATCCAAAGAAGCTTAT+TGG - chr7_1:66475356-66475375 Msa1031770:intron 30.0%
AACTTACCAATAAGCTTCTT+TGG + chr7_1:66475365-66475384 None:intergenic 30.0%
TCAAGAGAGATATGAAGTTA+GGG - chr7_1:66475545-66475564 Msa1031770:intron 30.0%
AAAAGTAACAAGAAGGTAAG+TGG - chr7_1:66475573-66475592 Msa1031770:intron 30.0%
TATGCAAATATTTGAGAGGT+TGG - chr7_1:66475753-66475772 Msa1031770:intron 30.0%
!! TCTAAACTATTTTGGGAAGA+TGG - chr7_1:66475797-66475816 Msa1031770:intron 30.0%
AAAAGAAGGCTGATCTAGAA+AGG - chr7_1:66474423-66474442 Msa1031770:three_prime_UTR 35.0%
CTAGAAAGGCAGATTAAAGA+AGG - chr7_1:66474437-66474456 Msa1031770:three_prime_UTR 35.0%
CAGATTAAAGAAGGTGAAGA+TGG - chr7_1:66474446-66474465 Msa1031770:three_prime_UTR 35.0%
ATTAAAGAAGGTGAAGATGG+AGG - chr7_1:66474449-66474468 Msa1031770:three_prime_UTR 35.0%
AGGTCAAGATATTAACGTGA+AGG - chr7_1:66474469-66474488 Msa1031770:three_prime_UTR 35.0%
CAAAACAAAACCTTTCACCA+AGG + chr7_1:66474578-66474597 None:intergenic 35.0%
ATAAAAAAGGAGAGTGGTAC+TGG + chr7_1:66474716-66474735 None:intergenic 35.0%
! TTTTGCTCTGTCAAGCAATA+TGG - chr7_1:66474976-66474995 Msa1031770:intron 35.0%
GAGAAGAAAAAGCTCTTGTT+TGG - chr7_1:66475235-66475254 Msa1031770:intron 35.0%
GAGAGAGTAATGTAAAGCTT+AGG + chr7_1:66475261-66475280 None:intergenic 35.0%
! GAAGATTTTCTTGCCATGAA+AGG - chr7_1:66475297-66475316 Msa1031770:intron 35.0%
!! ATGATTTTGGCCCTCTTTTT+GGG + chr7_1:66475342-66475361 None:intergenic 35.0%
ATGTTGTCCACATGTTTGTT+TGG - chr7_1:66475474-66475493 Msa1031770:intron 35.0%
ACAAACACCAAACAAACATG+TGG + chr7_1:66475484-66475503 None:intergenic 35.0%
!! GTTTGGTGTTTGTTTACAGT+TGG - chr7_1:66475491-66475510 Msa1031770:intron 35.0%
GTCAAGAGAGATATGAAGTT+AGG - chr7_1:66475544-66475563 Msa1031770:intron 35.0%
GGAGAAGAAAAGTAACAAGA+AGG - chr7_1:66475566-66475585 Msa1031770:intron 35.0%
!!! TTTTTGGGTTTTTGATGCAG+AGG - chr7_1:66475672-66475691 Msa1031770:intron 35.0%
AAAAGAAGGCTGATCTAGAA+AGG - chr7_1:66474423-66474442 Msa1031770:three_prime_UTR 35.0%
CTAGAAAGGCAGATTAAAGA+AGG - chr7_1:66474437-66474456 Msa1031770:three_prime_UTR 35.0%
CAGATTAAAGAAGGTGAAGA+TGG - chr7_1:66474446-66474465 Msa1031770:three_prime_UTR 35.0%
ATTAAAGAAGGTGAAGATGG+AGG - chr7_1:66474449-66474468 Msa1031770:three_prime_UTR 35.0%
AGGTCAAGATATTAACGTGA+AGG - chr7_1:66474469-66474488 Msa1031770:three_prime_UTR 35.0%
CAAAACAAAACCTTTCACCA+AGG + chr7_1:66474578-66474597 None:intergenic 35.0%
ATAAAAAAGGAGAGTGGTAC+TGG + chr7_1:66474716-66474735 None:intergenic 35.0%
! TTTTGCTCTGTCAAGCAATA+TGG - chr7_1:66474976-66474995 Msa1031770:intron 35.0%
GAGAAGAAAAAGCTCTTGTT+TGG - chr7_1:66475235-66475254 Msa1031770:intron 35.0%
GAGAGAGTAATGTAAAGCTT+AGG + chr7_1:66475261-66475280 None:intergenic 35.0%
! GAAGATTTTCTTGCCATGAA+AGG - chr7_1:66475297-66475316 Msa1031770:intron 35.0%
!! ATGATTTTGGCCCTCTTTTT+GGG + chr7_1:66475342-66475361 None:intergenic 35.0%
ATGTTGTCCACATGTTTGTT+TGG - chr7_1:66475474-66475493 Msa1031770:intron 35.0%
ACAAACACCAAACAAACATG+TGG + chr7_1:66475484-66475503 None:intergenic 35.0%
!! GTTTGGTGTTTGTTTACAGT+TGG - chr7_1:66475491-66475510 Msa1031770:intron 35.0%
GTCAAGAGAGATATGAAGTT+AGG - chr7_1:66475544-66475563 Msa1031770:intron 35.0%
GGAGAAGAAAAGTAACAAGA+AGG - chr7_1:66475566-66475585 Msa1031770:intron 35.0%
!!! TTTTTGGGTTTTTGATGCAG+AGG - chr7_1:66475672-66475691 Msa1031770:intron 35.0%
!! TGCAAAGTTAGAAGCACTCT+TGG - chr7_1:66474400-66474419 Msa1031770:three_prime_UTR 40.0%
!! AGAAGCACTCTTGGAAAAGA+AGG - chr7_1:66474409-66474428 Msa1031770:three_prime_UTR 40.0%
ACTATGTTTGCCTTGGTGAA+AGG - chr7_1:66474565-66474584 Msa1031770:three_prime_UTR 40.0%
CTGGACAAGATGGAAATAGA+CGG + chr7_1:66474697-66474716 None:intergenic 40.0%
!! GTCGTCAGAATTCTAGAATC+TGG + chr7_1:66474752-66474771 None:intergenic 40.0%
!! AGGTGTTACTGTTACTCACT+AGG - chr7_1:66474792-66474811 Msa1031770:intron 40.0%
AACATGAGCATAAGTAGTGC+AGG + chr7_1:66474958-66474977 None:intergenic 40.0%
TCTACAAGCTGCACATATAC+AGG + chr7_1:66475025-66475044 None:intergenic 40.0%
AGGAAGCTTACAACCTTTCA+TGG + chr7_1:66475313-66475332 None:intergenic 40.0%
TTCCTCAAAGACCCAAAAAG+AGG - chr7_1:66475328-66475347 Msa1031770:intron 40.0%
TCCTCAAAGACCCAAAAAGA+GGG - chr7_1:66475329-66475348 Msa1031770:intron 40.0%
!! GATGATTTTGGCCCTCTTTT+TGG + chr7_1:66475343-66475362 None:intergenic 40.0%
!! TGTTTACAGTTGGTAAGTCC+TGG - chr7_1:66475501-66475520 Msa1031770:intron 40.0%
ACAAGAAGGTAAGTGGTTGT+TGG - chr7_1:66475580-66475599 Msa1031770:intron 40.0%
TTTGGGAAGATGGAAGATGA+TGG - chr7_1:66475807-66475826 Msa1031770:intron 40.0%
!! TGCAAAGTTAGAAGCACTCT+TGG - chr7_1:66474400-66474419 Msa1031770:three_prime_UTR 40.0%
!! AGAAGCACTCTTGGAAAAGA+AGG - chr7_1:66474409-66474428 Msa1031770:three_prime_UTR 40.0%
ACTATGTTTGCCTTGGTGAA+AGG - chr7_1:66474565-66474584 Msa1031770:three_prime_UTR 40.0%
CTGGACAAGATGGAAATAGA+CGG + chr7_1:66474697-66474716 None:intergenic 40.0%
!! GTCGTCAGAATTCTAGAATC+TGG + chr7_1:66474752-66474771 None:intergenic 40.0%
!! AGGTGTTACTGTTACTCACT+AGG - chr7_1:66474792-66474811 Msa1031770:intron 40.0%
AACATGAGCATAAGTAGTGC+AGG + chr7_1:66474958-66474977 None:intergenic 40.0%
TCTACAAGCTGCACATATAC+AGG + chr7_1:66475025-66475044 None:intergenic 40.0%
AGGAAGCTTACAACCTTTCA+TGG + chr7_1:66475313-66475332 None:intergenic 40.0%
TTCCTCAAAGACCCAAAAAG+AGG - chr7_1:66475328-66475347 Msa1031770:intron 40.0%
TCCTCAAAGACCCAAAAAGA+GGG - chr7_1:66475329-66475348 Msa1031770:intron 40.0%
!! GATGATTTTGGCCCTCTTTT+TGG + chr7_1:66475343-66475362 None:intergenic 40.0%
!! TGTTTACAGTTGGTAAGTCC+TGG - chr7_1:66475501-66475520 Msa1031770:intron 40.0%
ACAAGAAGGTAAGTGGTTGT+TGG - chr7_1:66475580-66475599 Msa1031770:intron 40.0%
TTTGGGAAGATGGAAGATGA+TGG - chr7_1:66475807-66475826 Msa1031770:intron 40.0%
TGCTCTGTCAAGCAATATGG+TGG - chr7_1:66474979-66474998 Msa1031770:intron 45.0%
AAGCTGCACATATACAGGAG+TGG + chr7_1:66475020-66475039 None:intergenic 45.0%
AACATCGCAAGTGCCTTTAC+CGG + chr7_1:66475208-66475227 None:intergenic 45.0%
GGCACTTGCGATGTTATCAA+TGG - chr7_1:66475213-66475232 Msa1031770:CDS 45.0%
ATATCAGTCAACCATGCTCC+AGG + chr7_1:66475522-66475541 None:intergenic 45.0%
! TTTTTGATGCAGAGGCCAAG+AGG - chr7_1:66475680-66475699 Msa1031770:intron 45.0%
CCAAGAGGATTGAAGGCTAT+GGG - chr7_1:66475695-66475714 Msa1031770:intron 45.0%
CAAGAGGATTGAAGGCTATG+GGG - chr7_1:66475696-66475715 Msa1031770:intron 45.0%
TGCTCTGTCAAGCAATATGG+TGG - chr7_1:66474979-66474998 Msa1031770:intron 45.0%
AAGCTGCACATATACAGGAG+TGG + chr7_1:66475020-66475039 None:intergenic 45.0%
AACATCGCAAGTGCCTTTAC+CGG + chr7_1:66475208-66475227 None:intergenic 45.0%
GGCACTTGCGATGTTATCAA+TGG - chr7_1:66475213-66475232 Msa1031770:CDS 45.0%
ATATCAGTCAACCATGCTCC+AGG + chr7_1:66475522-66475541 None:intergenic 45.0%
! TTTTTGATGCAGAGGCCAAG+AGG - chr7_1:66475680-66475699 Msa1031770:intron 45.0%
CCAAGAGGATTGAAGGCTAT+GGG - chr7_1:66475695-66475714 Msa1031770:intron 45.0%
CAAGAGGATTGAAGGCTATG+GGG - chr7_1:66475696-66475715 Msa1031770:intron 45.0%
!!! TTTTTTCTAAATATAATTTT+TGG - chr7_1:66475656-66475675 Msa1031770:intron 5.0%
!!! TTTTTCTAAATATAATTTTT+GGG - chr7_1:66475657-66475676 Msa1031770:intron 5.0%
!!! TTTTTTCTAAATATAATTTT+TGG - chr7_1:66475656-66475675 Msa1031770:intron 5.0%
!!! TTTTTCTAAATATAATTTTT+GGG - chr7_1:66475657-66475676 Msa1031770:intron 5.0%
! GAGAGTGGTACTGGACAAGA+TGG + chr7_1:66474707-66474726 None:intergenic 50.0%
!!! GCCCTCTTTTTGGGTCTTTG+AGG + chr7_1:66475333-66475352 None:intergenic 50.0%
!! AGTTGGTAAGTCCTGGAGCA+TGG - chr7_1:66475508-66475527 Msa1031770:intron 50.0%
GCCAAGAGGATTGAAGGCTA+TGG - chr7_1:66475694-66475713 Msa1031770:intron 50.0%
CCCATAGCCTTCAATCCTCT+TGG + chr7_1:66475698-66475717 None:intergenic 50.0%
ATTGAAGGCTATGGGGAGTG+TGG - chr7_1:66475703-66475722 Msa1031770:intron 50.0%
! GAGAGTGGTACTGGACAAGA+TGG + chr7_1:66474707-66474726 None:intergenic 50.0%
!!! GCCCTCTTTTTGGGTCTTTG+AGG + chr7_1:66475333-66475352 None:intergenic 50.0%
!! AGTTGGTAAGTCCTGGAGCA+TGG - chr7_1:66475508-66475527 Msa1031770:intron 50.0%
GCCAAGAGGATTGAAGGCTA+TGG - chr7_1:66475694-66475713 Msa1031770:intron 50.0%
CCCATAGCCTTCAATCCTCT+TGG + chr7_1:66475698-66475717 None:intergenic 50.0%
ATTGAAGGCTATGGGGAGTG+TGG - chr7_1:66475703-66475722 Msa1031770:intron 50.0%
TCAGCAGAGGACACCGGTAA+AGG - chr7_1:66475192-66475211 Msa1031770:CDS 55.0%
GCAGAGGCCAAGAGGATTGA+AGG - chr7_1:66475688-66475707 Msa1031770:intron 55.0%
TCAGCAGAGGACACCGGTAA+AGG - chr7_1:66475192-66475211 Msa1031770:CDS 55.0%
GCAGAGGCCAAGAGGATTGA+AGG - chr7_1:66475688-66475707 Msa1031770:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 66474399 66476049 66474399 ID=Msa1031770;Name=Msa1031770
chr7_1 mRNA 66474399 66476049 66474399 ID=Msa1031770-mRNA-1;Parent=Msa1031770;Name=Msa1031770-mRNA-1;_AED=0.36;_eAED=0.37;_QI=0|0.66|0.5|1|0.66|0.5|4|307|99
chr7_1 exon 66474399 66474756 66474399 ID=Msa1031770-mRNA-1:exon:14982;Parent=Msa1031770-mRNA-1
chr7_1 exon 66474861 66474938 66474861 ID=Msa1031770-mRNA-1:exon:14981;Parent=Msa1031770-mRNA-1
chr7_1 exon 66475071 66475234 66475071 ID=Msa1031770-mRNA-1:exon:14980;Parent=Msa1031770-mRNA-1
chr7_1 exon 66476043 66476049 66476043 ID=Msa1031770-mRNA-1:exon:14979;Parent=Msa1031770-mRNA-1
chr7_1 CDS 66476043 66476049 66476043 ID=Msa1031770-mRNA-1:cds;Parent=Msa1031770-mRNA-1
chr7_1 CDS 66475071 66475234 66475071 ID=Msa1031770-mRNA-1:cds;Parent=Msa1031770-mRNA-1
chr7_1 CDS 66474861 66474938 66474861 ID=Msa1031770-mRNA-1:cds;Parent=Msa1031770-mRNA-1
chr7_1 CDS 66474706 66474756 66474706 ID=Msa1031770-mRNA-1:cds;Parent=Msa1031770-mRNA-1
chr7_1 three_prime_UTR 66474399 66474705 66474399 ID=Msa1031770-mRNA-1:three_prime_utr;Parent=Msa1031770-mRNA-1
Gene Sequence

>Msa1031770

ATGCAAAGCACTTGCGATGTTATCAATGGAGAAGAAAAAGCTCTTGTTTGGCCTAAGCTTTACATTACTCTCTCAAGCAAAGAGAAAGAAGAAGATTTTCTTGCCATGAAAGGTTGTAAGCTTCCTCAAAGACCCAAAAAGAGGGCCAAAATCATCCAAAGAAGCTTATTGTTGGTAAGTCCTGGAGCATGGTTGACTGATATGTGTCAAGAGAGATATGAAGTTAGGGAGAAGAAAAGTAACAAGAAGAGGCCAAGAGGATTGAAGGCTATGGGGAGTGTGGAAAGTGATTCTGAATGA

Protein sequence

>Msa1031770

MQSTCDVINGEEKALVWPKLYITLSSKEKEEDFLAMKGCKLPQRPKKRAKIIQRSLLLVSPGAWLTDMCQERYEVREKKSNKKRPRGLKAMGSVESDSE*