Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574050 | XP_003630761.1 | 98.294 | 293 | 5 | 0 | 1 | 293 | 1 | 293 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574050 | sp|Q9ZSY8|IAA27_ARATH | 55.864 | 324 | 91 | 11 | 1 | 293 | 3 | 305 | 6.19e-101 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574050 | G7L869 | 98.294 | 293 | 5 | 0 | 1 | 293 | 1 | 293 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0574050 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0574050 | 0.836622 | 8.402448e-57 | -8.615850e-47 |
| Msa0002580 | Msa0574050 | 0.824369 | 8.379223e-54 | -8.615850e-47 |
| Msa0017670 | Msa0574050 | 0.827268 | 1.718629e-54 | -8.615850e-47 |
| Msa0019900 | Msa0574050 | 0.805839 | 1.099568e-49 | -8.615850e-47 |
| Msa0025160 | Msa0574050 | 0.825552 | 4.403964e-54 | -8.615850e-47 |
| Msa0032460 | Msa0574050 | 0.812389 | 4.345317e-51 | -8.615850e-47 |
| Msa0034810 | Msa0574050 | 0.812031 | 5.201836e-51 | -8.615850e-47 |
| Msa0035060 | Msa0574050 | 0.818044 | 2.407396e-52 | -8.615850e-47 |
| Msa0035140 | Msa0574050 | 0.800140 | 1.656958e-48 | -8.615850e-47 |
| Msa0036870 | Msa0574050 | 0.806457 | 8.151348e-50 | -8.615850e-47 |
| Msa0038290 | Msa0574050 | -0.821524 | 3.857860e-53 | -8.615850e-47 |
| Msa0042640 | Msa0574050 | 0.828017 | 1.135714e-54 | -8.615850e-47 |
| Msa0054690 | Msa0574050 | 0.810251 | 1.264763e-50 | -8.615850e-47 |
| Msa0098040 | Msa0574050 | 0.842648 | 2.274631e-58 | -8.615850e-47 |
| Msa0108880 | Msa0574050 | 0.812378 | 4.370473e-51 | -8.615850e-47 |
| Msa0117480 | Msa0574050 | 0.822145 | 2.769905e-53 | -8.615850e-47 |
| Msa0132630 | Msa0574050 | -0.844222 | 8.643405e-59 | -8.615850e-47 |
| Msa0161930 | Msa0574050 | 0.814160 | 1.774359e-51 | -8.615850e-47 |
| Msa0173690 | Msa0574050 | 0.816844 | 4.483766e-52 | -8.615850e-47 |
| Msa0211030 | Msa0574050 | 0.808550 | 2.931339e-50 | -8.615850e-47 |
| Msa0230800 | Msa0574050 | 0.827704 | 1.350533e-54 | -8.615850e-47 |
| Msa0230870 | Msa0574050 | 0.807168 | 5.767289e-50 | -8.615850e-47 |
| Msa0425170 | Msa0574050 | 0.802050 | 6.744153e-49 | -8.615850e-47 |
| Msa0436910 | Msa0574050 | 0.830445 | 2.924956e-55 | -8.615850e-47 |
| Msa0472950 | Msa0574050 | 0.829550 | 4.834482e-55 | -8.615850e-47 |
| Msa0244640 | Msa0574050 | 0.827438 | 1.564819e-54 | -8.615850e-47 |
| Msa0248680 | Msa0574050 | 0.807494 | 4.918261e-50 | -8.615850e-47 |
| Msa0251620 | Msa0574050 | 0.817575 | 3.071312e-52 | -8.615850e-47 |
| Msa0269970 | Msa0574050 | 0.802770 | 4.791077e-49 | -8.615850e-47 |
| Msa0270340 | Msa0574050 | 0.822893 | 1.856762e-53 | -8.615850e-47 |
| Msa0283330 | Msa0574050 | 0.812744 | 3.634372e-51 | -8.615850e-47 |
| Msa0287740 | Msa0574050 | 0.806365 | 8.521596e-50 | -8.615850e-47 |
| Msa0307670 | Msa0574050 | 0.840661 | 7.599517e-58 | -8.615850e-47 |
| Msa0321620 | Msa0574050 | 0.813322 | 2.714308e-51 | -8.615850e-47 |
| Msa0349210 | Msa0574050 | 0.809296 | 2.030014e-50 | -8.615850e-47 |
| Msa0359020 | Msa0574050 | 0.826664 | 2.395896e-54 | -8.615850e-47 |
| Msa0528570 | Msa0574050 | 0.809291 | 2.035168e-50 | -8.615850e-47 |
| Msa0529030 | Msa0574050 | 0.825606 | 4.276917e-54 | -8.615850e-47 |
| Msa0549370 | Msa0574050 | 0.800678 | 1.287454e-48 | -8.615850e-47 |
| Msa0557370 | Msa0574050 | 0.803127 | 4.043073e-49 | -8.615850e-47 |
| Msa0570120 | Msa0574050 | 0.840403 | 8.881054e-58 | -8.615850e-47 |
| Msa0574050 | Msa0587620 | 0.813430 | 2.570197e-51 | -8.615850e-47 |
| Msa0574050 | Msa0597270 | 0.808343 | 3.244366e-50 | -8.615850e-47 |
| Msa0574050 | Msa0604750 | 0.832942 | 7.087930e-56 | -8.615850e-47 |
| Msa0574050 | Msa0611210 | 0.831393 | 1.711934e-55 | -8.615850e-47 |
| Msa0574050 | Msa0651550 | 0.812467 | 4.178106e-51 | -8.615850e-47 |
| Msa0574050 | Msa0661150 | 0.807030 | 6.169195e-50 | -8.615850e-47 |
| Msa0574050 | Msa0670100 | 0.818039 | 2.413438e-52 | -8.615850e-47 |
| Msa0574050 | Msa0693890 | 0.818652 | 1.752678e-52 | -8.615850e-47 |
| Msa0574050 | Msa0700460 | 0.823557 | 1.299083e-53 | -8.615850e-47 |
| Msa0574050 | Msa0701720 | 0.809946 | 1.471398e-50 | -8.615850e-47 |
| Msa0574050 | Msa0738700 | 0.815927 | 7.191888e-52 | -8.615850e-47 |
| Msa0574050 | Msa0756490 | 0.846906 | 1.617520e-59 | -8.615850e-47 |
| Msa0574050 | Msa0761670 | 0.822324 | 2.517654e-53 | -8.615850e-47 |
| Msa0574050 | Msa0792370 | 0.844857 | 5.829965e-59 | -8.615850e-47 |
| Msa0574050 | Msa0828500 | 0.800328 | 1.517343e-48 | -8.615850e-47 |
| Msa0574050 | Msa0829300 | 0.901085 | 3.827035e-78 | -8.615850e-47 |
| Msa0574050 | Msa0829330 | 0.907104 | 7.266841e-81 | -8.615850e-47 |
| Msa0574050 | Msa0835490 | 0.811081 | 8.369233e-51 | -8.615850e-47 |
| Msa0574050 | Msa0859290 | 0.812467 | 4.178230e-51 | -8.615850e-47 |
| Msa0574050 | Msa0894790 | 0.843030 | 1.800513e-58 | -8.615850e-47 |
| Msa0574050 | Msa0903310 | 0.815746 | 7.892021e-52 | -8.615850e-47 |
| Msa0574050 | Msa0921590 | 0.839347 | 1.673507e-57 | -8.615850e-47 |
| Msa0574050 | Msa0935820 | 0.821608 | 3.689228e-53 | -8.615850e-47 |
| Msa0574050 | Msa1012080 | 0.840560 | 8.079340e-58 | -8.615850e-47 |
| Msa0574050 | Msa1021590 | 0.824733 | 6.877368e-54 | -8.615850e-47 |
| Msa0574050 | Msa1034600 | 0.812074 | 5.090727e-51 | -8.615850e-47 |
| Msa0574050 | Msa1040150 | 0.848768 | 4.965036e-60 | -8.615850e-47 |
| Msa0574050 | Msa1044680 | 0.830485 | 2.859381e-55 | -8.615850e-47 |
| Msa0574050 | Msa1064370 | 0.808950 | 2.407285e-50 | -8.615850e-47 |
| Msa0574050 | Msa1074370 | 0.804941 | 1.695951e-49 | -8.615850e-47 |
| Msa0574050 | Msa1078820 | 0.813273 | 2.782510e-51 | -8.615850e-47 |
| Msa0574050 | Msa1090140 | 0.816463 | 5.459280e-52 | -8.615850e-47 |
| Msa0574050 | Msa1105640 | 0.835805 | 1.354727e-56 | -8.615850e-47 |
| Msa0574050 | Msa1123970 | 0.823725 | 1.186559e-53 | -8.615850e-47 |
| Msa0574050 | Msa1128130 | 0.821037 | 4.994258e-53 | -8.615850e-47 |
| Msa0574050 | Msa1148960 | 0.830260 | 3.245476e-55 | -8.615850e-47 |
| Msa0574050 | Msa1169650 | 0.820284 | 7.440325e-53 | -8.615850e-47 |
| Msa0574050 | Msa1204040 | 0.822021 | 2.959321e-53 | -8.615850e-47 |
| Msa0574050 | Msa1216110 | 0.844841 | 5.886614e-59 | -8.615850e-47 |
| Msa0574050 | Msa1228630 | 0.812474 | 4.162537e-51 | -8.615850e-47 |
| Msa0574050 | Msa1265650 | 0.827203 | 1.781261e-54 | -8.615850e-47 |
| Msa0574050 | Msa1297230 | 0.801994 | 6.922948e-49 | -8.615850e-47 |
| Msa0574050 | Msa1303560 | 0.814048 | 1.878254e-51 | -8.615850e-47 |
| Msa0574050 | Msa1303650 | 0.819178 | 1.330866e-52 | -8.615850e-47 |
| Msa0574050 | Msa1321340 | 0.800923 | 1.147771e-48 | -8.615850e-47 |
| Msa0574050 | Msa1358290 | 0.805865 | 1.086062e-49 | -8.615850e-47 |
| Msa0574050 | Msa1372040 | 0.847655 | 1.007759e-59 | -8.615850e-47 |
| Msa0574050 | Msa1405460 | 0.819669 | 1.028563e-52 | -8.615850e-47 |
| Msa0574050 | Msa1415540 | 0.813254 | 2.809215e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574050 | MtrunA17_Chr8g0390281 | 98.294 | 293 | 5 | 0 | 1 | 293 | 1 | 293 | 0.0 | 591 |
| Msa0574050 | MtrunA17_Chr6g0486121 | 61.348 | 282 | 57 | 5 | 23 | 293 | 14 | 254 | 5.93e-109 | 316 |
| Msa0574050 | MtrunA17_Chr2g0331411 | 55.152 | 330 | 107 | 10 | 1 | 293 | 1 | 326 | 8.03e-105 | 308 |
| Msa0574050 | MtrunA17_Chr5g0411501 | 51.274 | 314 | 103 | 10 | 12 | 293 | 40 | 335 | 1.29e-95 | 285 |
| Msa0574050 | MtrunA17_Chr8g0366881 | 50.482 | 311 | 107 | 9 | 12 | 293 | 56 | 348 | 1.86e-91 | 275 |
| Msa0574050 | MtrunA17_Chr5g0428141 | 47.205 | 322 | 105 | 8 | 12 | 293 | 51 | 347 | 6.11e-83 | 253 |
| Msa0574050 | MtrunA17_Chr1g0190711 | 48.571 | 280 | 91 | 8 | 24 | 292 | 15 | 252 | 1.15e-72 | 224 |
| Msa0574050 | MtrunA17_Chr1g0187921 | 47.636 | 275 | 95 | 6 | 23 | 293 | 7 | 236 | 1.92e-70 | 218 |
| Msa0574050 | MtrunA17_Chr7g0260641 | 63.125 | 160 | 55 | 2 | 135 | 293 | 94 | 250 | 2.07e-66 | 207 |
| Msa0574050 | MtrunA17_Chr1g0184791 | 62.424 | 165 | 51 | 4 | 135 | 292 | 84 | 244 | 8.22e-65 | 203 |
| Msa0574050 | MtrunA17_Chr1g0184801 | 45.211 | 261 | 71 | 11 | 24 | 282 | 12 | 202 | 5.74e-49 | 161 |
| Msa0574050 | MtrunA17_Chr7g0260621 | 43.182 | 264 | 83 | 10 | 19 | 282 | 6 | 202 | 7.51e-49 | 161 |
| Msa0574050 | MtrunA17_Chr1g0187961 | 47.826 | 184 | 67 | 5 | 98 | 281 | 24 | 178 | 8.97e-46 | 152 |
| Msa0574050 | MtrunA17_Chr1g0166011 | 41.473 | 258 | 75 | 9 | 24 | 281 | 1 | 182 | 4.77e-45 | 150 |
| Msa0574050 | MtrunA17_Chr1g0183251 | 43.169 | 183 | 71 | 3 | 139 | 288 | 81 | 263 | 1.28e-37 | 134 |
| Msa0574050 | MtrunA17_Chr2g0330951 | 42.442 | 172 | 76 | 5 | 136 | 284 | 92 | 263 | 8.52e-33 | 121 |
| Msa0574050 | MtrunA17_Chr4g0004181 | 49.333 | 150 | 45 | 4 | 138 | 285 | 52 | 172 | 1.44e-32 | 118 |
| Msa0574050 | MtrunA17_Chr2g0332141 | 53.636 | 110 | 38 | 3 | 170 | 276 | 4 | 103 | 8.48e-32 | 114 |
| Msa0574050 | MtrunA17_Chr8g0340731 | 32.384 | 281 | 133 | 11 | 24 | 277 | 10 | 260 | 4.44e-28 | 109 |
| Msa0574050 | MtrunA17_Chr3g0137601 | 30.921 | 152 | 79 | 4 | 131 | 277 | 79 | 209 | 1.91e-19 | 84.7 |
| Msa0574050 | MtrunA17_Chr4g0069561 | 35.811 | 148 | 63 | 5 | 135 | 276 | 61 | 182 | 3.98e-18 | 80.5 |
| Msa0574050 | MtrunA17_Chr7g0270851 | 36.090 | 133 | 59 | 4 | 146 | 274 | 45 | 155 | 1.46e-16 | 75.5 |
| Msa0574050 | MtrunA17_Chr1g0193861 | 37.607 | 117 | 57 | 2 | 165 | 281 | 76 | 176 | 2.04e-16 | 75.5 |
| Msa0574050 | MtrunA17_Chr4g0064131 | 30.769 | 143 | 62 | 3 | 141 | 275 | 93 | 206 | 2.97e-14 | 70.1 |
| Msa0574050 | MtrunA17_Chr1g0209181 | 28.571 | 161 | 85 | 4 | 114 | 274 | 38 | 168 | 7.50e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574050 | AT4G29080.1 | 55.864 | 324 | 91 | 11 | 1 | 293 | 3 | 305 | 6.29e-102 | 300 |
| Msa0574050 | AT2G22670.4 | 48.993 | 298 | 97 | 7 | 24 | 292 | 64 | 335 | 2.19e-84 | 257 |
| Msa0574050 | AT2G22670.3 | 48.993 | 298 | 97 | 7 | 24 | 292 | 47 | 318 | 2.65e-84 | 256 |
| Msa0574050 | AT2G22670.1 | 48.993 | 298 | 97 | 7 | 24 | 292 | 47 | 318 | 2.65e-84 | 256 |
| Msa0574050 | AT2G22670.5 | 48.322 | 298 | 97 | 8 | 24 | 292 | 47 | 316 | 3.60e-81 | 248 |
| Msa0574050 | AT2G22670.2 | 48.322 | 298 | 97 | 8 | 24 | 292 | 47 | 316 | 3.60e-81 | 248 |
| Msa0574050 | AT5G65670.2 | 46.128 | 297 | 110 | 6 | 24 | 292 | 61 | 335 | 5.76e-74 | 230 |
| Msa0574050 | AT5G65670.1 | 45.819 | 299 | 110 | 7 | 24 | 292 | 61 | 337 | 4.15e-72 | 226 |
| Msa0574050 | AT4G14550.1 | 49.091 | 275 | 86 | 9 | 24 | 292 | 1 | 227 | 4.75e-70 | 216 |
| Msa0574050 | AT3G04730.1 | 45.361 | 291 | 80 | 6 | 24 | 292 | 2 | 235 | 4.10e-69 | 214 |
| Msa0574050 | AT3G23050.1 | 49.301 | 286 | 81 | 12 | 24 | 293 | 6 | 243 | 9.90e-69 | 214 |
| Msa0574050 | AT1G04250.1 | 47.426 | 272 | 96 | 8 | 21 | 292 | 4 | 228 | 7.87e-66 | 206 |
| Msa0574050 | AT4G14550.2 | 47.727 | 264 | 84 | 9 | 24 | 281 | 1 | 216 | 5.90e-63 | 199 |
| Msa0574050 | AT4G14550.3 | 44.444 | 243 | 81 | 9 | 24 | 260 | 1 | 195 | 1.18e-49 | 163 |
| Msa0574050 | AT3G23050.2 | 45.059 | 253 | 76 | 11 | 24 | 261 | 6 | 210 | 6.64e-49 | 162 |
| Msa0574050 | AT1G04240.1 | 41.313 | 259 | 75 | 10 | 24 | 282 | 5 | 186 | 9.71e-47 | 155 |
| Msa0574050 | AT1G04240.2 | 41.473 | 258 | 74 | 10 | 24 | 281 | 105 | 285 | 2.80e-45 | 155 |
| Msa0574050 | AT5G43700.1 | 52.667 | 150 | 47 | 6 | 133 | 282 | 57 | 182 | 2.10e-42 | 144 |
| Msa0574050 | AT3G23030.1 | 48.993 | 149 | 45 | 2 | 133 | 281 | 53 | 170 | 3.71e-39 | 135 |
| Msa0574050 | AT2G33310.2 | 44.068 | 177 | 69 | 4 | 133 | 287 | 69 | 237 | 5.77e-39 | 137 |
| Msa0574050 | AT3G23030.2 | 48.993 | 149 | 45 | 2 | 133 | 281 | 140 | 257 | 1.55e-38 | 137 |
| Msa0574050 | AT3G15540.1 | 36.567 | 268 | 93 | 8 | 23 | 288 | 5 | 197 | 1.78e-38 | 134 |
| Msa0574050 | AT1G04550.2 | 45.946 | 185 | 65 | 7 | 133 | 293 | 63 | 236 | 4.67e-38 | 135 |
| Msa0574050 | AT2G33310.3 | 44.068 | 177 | 68 | 5 | 133 | 287 | 69 | 236 | 2.09e-37 | 133 |
| Msa0574050 | AT2G33310.1 | 44.068 | 177 | 68 | 5 | 133 | 287 | 69 | 236 | 2.09e-37 | 133 |
| Msa0574050 | AT1G52830.1 | 35.907 | 259 | 87 | 7 | 23 | 281 | 5 | 184 | 1.48e-36 | 129 |
| Msa0574050 | AT4G14560.1 | 49.020 | 153 | 49 | 5 | 126 | 278 | 41 | 164 | 2.80e-35 | 125 |
| Msa0574050 | AT4G28640.1 | 44.910 | 167 | 70 | 4 | 133 | 282 | 81 | 242 | 6.09e-35 | 127 |
| Msa0574050 | AT4G28640.3 | 44.848 | 165 | 69 | 4 | 133 | 280 | 81 | 240 | 9.63e-35 | 126 |
| Msa0574050 | AT3G16500.1 | 40.964 | 166 | 75 | 4 | 130 | 277 | 92 | 252 | 1.90e-34 | 126 |
| Msa0574050 | AT3G16500.2 | 40.964 | 166 | 75 | 4 | 130 | 277 | 92 | 252 | 2.56e-34 | 125 |
| Msa0574050 | AT1G15580.1 | 44.366 | 142 | 49 | 2 | 135 | 276 | 48 | 159 | 4.71e-34 | 122 |
| Msa0574050 | AT4G28640.2 | 44.848 | 165 | 69 | 4 | 133 | 280 | 81 | 240 | 1.14e-33 | 125 |
| Msa0574050 | AT1G04100.1 | 41.916 | 167 | 68 | 4 | 142 | 281 | 95 | 259 | 5.13e-31 | 117 |
| Msa0574050 | AT5G25890.1 | 36.250 | 160 | 74 | 3 | 125 | 284 | 39 | 170 | 1.24e-29 | 110 |
| Msa0574050 | AT1G51950.1 | 42.683 | 164 | 67 | 6 | 136 | 277 | 92 | 250 | 3.76e-29 | 112 |
| Msa0574050 | AT4G14550.4 | 40.513 | 195 | 65 | 8 | 24 | 212 | 1 | 150 | 4.22e-28 | 107 |
| Msa0574050 | AT3G23050.3 | 41.429 | 210 | 60 | 11 | 24 | 218 | 6 | 167 | 1.42e-27 | 105 |
| Msa0574050 | AT3G17600.1 | 37.931 | 145 | 64 | 5 | 130 | 274 | 36 | 154 | 8.29e-23 | 92.4 |
| Msa0574050 | AT2G46990.1 | 39.423 | 104 | 47 | 1 | 173 | 276 | 85 | 172 | 7.00e-19 | 82.4 |
| Msa0574050 | AT3G62100.1 | 38.393 | 112 | 48 | 3 | 169 | 275 | 74 | 169 | 1.09e-18 | 82.0 |
| Msa0574050 | AT2G46990.2 | 40.449 | 89 | 37 | 1 | 173 | 261 | 85 | 157 | 2.44e-14 | 69.7 |
| Msa0574050 | AT3G62100.2 | 37.755 | 98 | 40 | 3 | 169 | 261 | 74 | 155 | 7.28e-14 | 68.2 |
| Msa0574050 | AT4G32280.2 | 35.294 | 102 | 45 | 2 | 173 | 274 | 118 | 198 | 4.25e-13 | 67.4 |
| Msa0574050 | AT4G32280.1 | 35.294 | 102 | 45 | 2 | 173 | 274 | 160 | 240 | 1.25e-12 | 66.6 |
| Msa0574050 | AT1G15050.2 | 31.579 | 133 | 74 | 2 | 147 | 279 | 35 | 150 | 5.55e-12 | 63.2 |
| Msa0574050 | AT1G15050.1 | 31.579 | 133 | 74 | 2 | 147 | 279 | 67 | 182 | 1.16e-11 | 62.8 |
| Msa0574050 | AT2G01200.2 | 33.043 | 115 | 60 | 2 | 165 | 279 | 91 | 188 | 1.36e-11 | 62.8 |
| Msa0574050 | AT2G01200.1 | 33.043 | 115 | 60 | 2 | 165 | 279 | 91 | 188 | 1.36e-11 | 62.8 |
Find 101 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACCAATGCTTCTCTCTT+TGG | 0.185471 | 4_1:+77416659 | None:intergenic |
| TTTAAACATAATCGTTATTA+AGG | 0.225459 | 4_1:-77413602 | Msa0574050:three_prime_UTR |
| CTCTCTTTGGTTTCCATTGA+AGG | 0.229858 | 4_1:+77416672 | None:intergenic |
| GCTATTACTGATGGAGGTTC+TGG | 0.289483 | 4_1:-77416522 | Msa0574050:CDS |
| AGATCCACTTTCCTCAAGTA+TGG | 0.291849 | 4_1:+77415060 | None:intergenic |
| GGCCTCCAATCCGATCTTTC+CGG | 0.299985 | 4_1:-77415176 | Msa0574050:CDS |
| GAGTCACCAGAGAGAGAAAA+TGG | 0.324653 | 4_1:-77416594 | Msa0574050:CDS |
| TTACATTAACTTGAAGAGAT+AGG | 0.334650 | 4_1:+77413533 | None:intergenic |
| TATATTGATGACAATATATT+AGG | 0.335296 | 4_1:-77413688 | Msa0574050:three_prime_UTR |
| CTTGGCCTACTATAAAGTTT+AGG | 0.335533 | 4_1:+77413711 | None:intergenic |
| TAGACGTTTCAAGGCTTCTT+AGG | 0.336881 | 4_1:-77413633 | Msa0574050:three_prime_UTR |
| GCCTCAGTTCAGTAGCTTTG+AGG | 0.337674 | 4_1:+77416634 | None:intergenic |
| TAGACGACTACAAGTCATTT+TGG | 0.341438 | 4_1:-77413658 | Msa0574050:three_prime_UTR |
| CCAGGCCAATGTGGCTCATA+TGG | 0.347339 | 4_1:-77414349 | Msa0574050:intron |
| GTGAAACCATTGAGTTCTTC+CGG | 0.369117 | 4_1:+77415157 | None:intergenic |
| TAACTAGAAAATTCCTTAAC+CGG | 0.372093 | 4_1:+77413421 | None:intergenic |
| ATGAAGAGTTCTGAAGCAAT+TGG | 0.391710 | 4_1:-77413996 | Msa0574050:CDS |
| AGCATCAGAGAAACCCCTTT+TGG | 0.393944 | 4_1:+77416542 | None:intergenic |
| TTGTTATCATGCAAAGGCTT+TGG | 0.395919 | 4_1:+77416345 | None:intergenic |
| TTCTCTGATGCTATTACTGA+TGG | 0.411709 | 4_1:-77416531 | Msa0574050:CDS |
| ATTTATTGAAGTGTTAAATA+CGG | 0.411955 | 4_1:+77416949 | None:intergenic |
| TGTTCTCTCCTAAAGCTAAA+GGG | 0.413830 | 4_1:-77416440 | Msa0574050:CDS |
| TGGTGGTGTGCTTAAGAGTT+TGG | 0.414516 | 4_1:-77416574 | Msa0574050:CDS |
| TTATGGAGAGGTTCCTTCAA+TGG | 0.424280 | 4_1:-77416685 | Msa0574050:CDS |
| GTGCCAGTGGAACAAGGTTA+TGG | 0.429339 | 4_1:-77416702 | Msa0574050:CDS |
| CTGATGGAGGTTCTGGGAAG+TGG | 0.429765 | 4_1:-77416515 | Msa0574050:CDS |
| CTCTCTGGTGACTCTGAGCC+TGG | 0.432328 | 4_1:+77416603 | None:intergenic |
| CCGAGTCTTGCAAGAGGTTG+AGG | 0.432404 | 4_1:-77414022 | Msa0574050:CDS |
| TTGTTCTCTCCTAAAGCTAA+AGG | 0.439212 | 4_1:-77416441 | Msa0574050:CDS |
| ATCACCATCCTTGTCTTCAT+AGG | 0.451715 | 4_1:+77414252 | None:intergenic |
| ACAACAACTGAAGCAGAGAA+AGG | 0.456026 | 4_1:+77416390 | None:intergenic |
| ATACAAAATTTATATACTAA+TGG | 0.457075 | 4_1:+77413576 | None:intergenic |
| AGATTGGTGGATCTCCTTCA+TGG | 0.457760 | 4_1:-77414292 | Msa0574050:CDS |
| CTATAAAGTTTAGGAGTATG+AGG | 0.461628 | 4_1:+77413720 | None:intergenic |
| TGTGTGTTAGAAGAAGAATA+AGG | 0.462178 | 4_1:-77416740 | Msa0574050:five_prime_UTR |
| CGAATCAGGGCGCAAGTTGT+GGG | 0.462809 | 4_1:-77415201 | Msa0574050:intron |
| CTATTACTGATGGAGGTTCT+GGG | 0.466403 | 4_1:-77416521 | Msa0574050:CDS |
| TGCTAGTTGGTGATGTTCCA+TGG | 0.467311 | 4_1:-77414225 | Msa0574050:CDS |
| TTTGGTGTCTGGTGCCAAAA+GGG | 0.469379 | 4_1:-77416556 | Msa0574050:CDS |
| TACATATATGCATTCAGACT+TGG | 0.476242 | 4_1:+77415104 | None:intergenic |
| ATACTCCTAAACTTTATAGT+AGG | 0.476895 | 4_1:-77413716 | Msa0574050:three_prime_UTR |
| TGGAAATGGTGGATCTGAAG+TGG | 0.482511 | 4_1:-77416484 | Msa0574050:CDS |
| GCGAATCAGGGCGCAAGTTG+TGG | 0.486260 | 4_1:-77415202 | Msa0574050:intron |
| TACATTAACTTGAAGAGATA+GGG | 0.487761 | 4_1:+77413534 | None:intergenic |
| GTGCTTAAGAGTTTGGTGTC+TGG | 0.488896 | 4_1:-77416567 | Msa0574050:CDS |
| TGAAGAGTTCTGAAGCAATT+GGG | 0.489200 | 4_1:-77413995 | Msa0574050:CDS |
| GTTTGGTGTCTGGTGCCAAA+AGG | 0.490914 | 4_1:-77416557 | Msa0574050:CDS |
| AAATTCCTTAACCGGACAAA+AGG | 0.496519 | 4_1:+77413429 | None:intergenic |
| GAACTGAGGCTAGGGTTACC+AGG | 0.498587 | 4_1:-77416621 | Msa0574050:CDS |
| AAATCTAAGTGAAAGTAGAT+TGG | 0.505003 | 4_1:-77414308 | Msa0574050:CDS |
| TGATGGAGGTTCTGGGAAGT+GGG | 0.506160 | 4_1:-77416514 | Msa0574050:CDS |
| GAAACCAAAGAGAGAAGCAT+TGG | 0.506436 | 4_1:-77416663 | Msa0574050:CDS |
| AAATCACAAAACAATGTTTG+AGG | 0.506846 | 4_1:+77416789 | None:intergenic |
| ATCTTTCCGGAAGAACTCAA+TGG | 0.508429 | 4_1:-77415163 | Msa0574050:CDS |
| TTGAGTTCTTCCGGAAAGAT+CGG | 0.510793 | 4_1:+77415166 | None:intergenic |
| GTCTATTCTATATACAAGAA+TGG | 0.511137 | 4_1:-77413745 | Msa0574050:three_prime_UTR |
| ATGAAGACAAGGATGGTGAT+TGG | 0.522716 | 4_1:-77414249 | Msa0574050:CDS |
| CAACAACTGAAGCAGAGAAA+GGG | 0.523720 | 4_1:+77416391 | None:intergenic |
| GGAAATGGTGGATCTGAAGT+GGG | 0.526580 | 4_1:-77416483 | Msa0574050:CDS |
| TATATTGTCATCAATATACT+TGG | 0.527688 | 4_1:+77413693 | None:intergenic |
| TCTGATGCTATTACTGATGG+AGG | 0.531086 | 4_1:-77416528 | Msa0574050:CDS |
| TTCCGGAAAGATCGGATTGG+AGG | 0.531139 | 4_1:+77415174 | None:intergenic |
| TCCTGCAGCACCTCGAGCCA+TGG | 0.531399 | 4_1:-77413890 | Msa0574050:intron |
| AAGAAATCTTACTTTGCAGA+AGG | 0.533764 | 4_1:+77416306 | None:intergenic |
| TTGAGGAAAGTGGATCTGAA+TGG | 0.538432 | 4_1:-77415054 | Msa0574050:CDS |
| TATGTAAAAGTCAGCATGGA+AGG | 0.544619 | 4_1:-77415087 | Msa0574050:CDS |
| AAATCTTACTTTGCAGAAGG+AGG | 0.546311 | 4_1:+77416309 | None:intergenic |
| TCTAAGTGAAAGTAGATTGG+TGG | 0.547921 | 4_1:-77414305 | Msa0574050:CDS |
| TCTCCATAACCTTGTTCCAC+TGG | 0.551400 | 4_1:+77416699 | None:intergenic |
| AAAGCTACTGAACTGAGGCT+AGG | 0.551933 | 4_1:-77416630 | Msa0574050:CDS |
| AGTTCTGAAGCAATTGGGCT+AGG | 0.552508 | 4_1:-77413990 | Msa0574050:intron |
| TGCTCCATACTTGAGGAAAG+TGG | 0.552637 | 4_1:-77415064 | Msa0574050:CDS |
| AAGCTACTGAACTGAGGCTA+GGG | 0.557212 | 4_1:-77416629 | Msa0574050:CDS |
| TGTGGTTTGTTATCATGCAA+AGG | 0.558132 | 4_1:+77416339 | None:intergenic |
| GAAGTGGGGTTGTGTAAAGA+TGG | 0.559129 | 4_1:-77416468 | Msa0574050:CDS |
| TTCTTCCGGAAAGATCGGAT+TGG | 0.561734 | 4_1:+77415171 | None:intergenic |
| TTGGTGTCTGGTGCCAAAAG+GGG | 0.565847 | 4_1:-77416555 | Msa0574050:CDS |
| AGAAAATAGACGTACTCCCA+TGG | 0.566126 | 4_1:+77414208 | None:intergenic |
| CATATATGTAAAAGTCAGCA+TGG | 0.572072 | 4_1:-77415091 | Msa0574050:CDS |
| GCTAGTTGGTGATGTTCCAT+GGG | 0.572324 | 4_1:-77414224 | Msa0574050:CDS |
| GTTCTCTCCTAAAGCTAAAG+GGG | 0.584761 | 4_1:-77416439 | Msa0574050:CDS |
| CCTCAACCTCTTGCAAGACT+CGG | 0.585897 | 4_1:+77414022 | None:intergenic |
| TTACATTTCTCCATGGCTCG+AGG | 0.588053 | 4_1:+77413880 | None:intergenic |
| TCAGGGCGCAAGTTGTGGGA+TGG | 0.592117 | 4_1:-77415197 | Msa0574050:intron |
| TGATGACAATATATTAGGCA+TGG | 0.592594 | 4_1:-77413683 | Msa0574050:three_prime_UTR |
| AAACTCCATATGAGCCACAT+TGG | 0.598333 | 4_1:+77414344 | None:intergenic |
| GCACATATTCTGAACCATGA+AGG | 0.604244 | 4_1:+77414278 | None:intergenic |
| ATACATAAGCAAGCGCAAGA+AGG | 0.606541 | 4_1:+77413775 | None:intergenic |
| GATGGTGATTGGATGCTAGT+TGG | 0.610602 | 4_1:-77414238 | Msa0574050:CDS |
| TGGAAGGTGCTCCATACTTG+AGG | 0.612400 | 4_1:-77415071 | Msa0574050:CDS |
| GCAGAAGGAGGAGAAACATG+TGG | 0.623815 | 4_1:+77416321 | None:intergenic |
| ATGTCTGTGCCAGTGGAACA+AGG | 0.641481 | 4_1:-77416708 | Msa0574050:CDS |
| TGTGCTTACCTATGAAGACA+AGG | 0.670147 | 4_1:-77414260 | Msa0574050:CDS |
| TTCTCTCCTAAAGCTAAAGG+GGG | 0.670925 | 4_1:-77416438 | Msa0574050:CDS |
| TGTTCACCGAGTCTTGCAAG+AGG | 0.674237 | 4_1:-77414028 | Msa0574050:CDS |
| GAAATGGTGGATCTGAAGTG+GGG | 0.680430 | 4_1:-77416482 | Msa0574050:CDS |
| CTTACCTATGAAGACAAGGA+TGG | 0.683773 | 4_1:-77414256 | Msa0574050:CDS |
| AGTGGAACAAGGTTATGGAG+AGG | 0.703860 | 4_1:-77416697 | Msa0574050:CDS |
| TTGACAAATCCAGGCCAATG+TGG | 0.706768 | 4_1:-77414358 | Msa0574050:intron |
| TCACCAGAGAGAGAAAATGG+TGG | 0.713194 | 4_1:-77416591 | Msa0574050:CDS |
| ACCTCAAAGCTACTGAACTG+AGG | 0.714271 | 4_1:-77416635 | Msa0574050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAAATTTATATACTAA+TGG | + | chr4_1:77416860-77416879 | None:intergenic | 10.0% |
| !!! | ATTTATTGAAGTGTTAAATA+CGG | + | chr4_1:77413487-77413506 | None:intergenic | 15.0% |
| !!! | AACTATTTAAGTTTAACATT+TGG | + | chr4_1:77415725-77415744 | None:intergenic | 15.0% |
| !!! | TCATTTTATTTAAGCAAAAA+AGG | + | chr4_1:77416038-77416057 | None:intergenic | 15.0% |
| !!! | GATGTTATTTTTGTTATTTT+AGG | - | chr4_1:77416381-77416400 | Msa0574050:CDS | 15.0% |
| !!! | GATTTTAATATAACAAACAT+TGG | + | chr4_1:77416474-77416493 | None:intergenic | 15.0% |
| !!! | TATATTGATGACAATATATT+AGG | - | chr4_1:77416745-77416764 | Msa0574050:five_prime_UTR | 15.0% |
| !! | TTTAAACATAATCGTTATTA+AGG | - | chr4_1:77416831-77416850 | Msa0574050:five_prime_UTR | 15.0% |
| !!! | GTAAGTGTGTTTTTTTTTTA+GGG | + | chr4_1:77413456-77413475 | None:intergenic | 20.0% |
| !!! | AGTAAGTGTGTTTTTTTTTT+AGG | + | chr4_1:77413457-77413476 | None:intergenic | 20.0% |
| !!! | TATTTGTGTTTTGTATTCAA+AGG | + | chr4_1:77413541-77413560 | None:intergenic | 20.0% |
| !! | AAGTAAGATTTCTTCTTATT+TGG | - | chr4_1:77414136-77414155 | Msa0574050:intron | 20.0% |
| !!! | ACTTGTTGTATCTTTTATTA+TGG | + | chr4_1:77414622-77414641 | None:intergenic | 20.0% |
| !!! | TGATTTCTTTTTTCTCAATA+CGG | - | chr4_1:77415201-77415220 | Msa0574050:intron | 20.0% |
| !!! | ATTGATAGTTAGACTTATTT+TGG | - | chr4_1:77416304-77416323 | Msa0574050:intron | 20.0% |
| !! | TATATTGTCATCAATATACT+TGG | + | chr4_1:77416743-77416762 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAGGGTTGTGTT+TGG | + | chr4_1:77413446-77413465 | None:intergenic | 25.0% |
| ! | AAATCACAAAACAATGTTTG+AGG | + | chr4_1:77413647-77413666 | None:intergenic | 25.0% |
| !! | TTATGTTTGTTGATTGATGT+TGG | - | chr4_1:77414219-77414238 | Msa0574050:intron | 25.0% |
| !!! | TTCTACATTAATTTGTCAGT+TGG | - | chr4_1:77414446-77414465 | Msa0574050:intron | 25.0% |
| !!! | ACTTTTTTCACAAGCTATTA+TGG | - | chr4_1:77414677-77414696 | Msa0574050:intron | 25.0% |
| !!! | TTCACATAGATAGTTACTTT+TGG | - | chr4_1:77414924-77414943 | Msa0574050:intron | 25.0% |
| ! | AACATGCAGAAGAAAATTTA+AGG | + | chr4_1:77414955-77414974 | None:intergenic | 25.0% |
| ! | CGATCATAAATTCAAAACTA+AGG | + | chr4_1:77415168-77415187 | None:intergenic | 25.0% |
| !!! | AGTTTTGAATTTATGATCGT+TGG | - | chr4_1:77415169-77415188 | Msa0574050:CDS | 25.0% |
| ! | GCAAAAATATTTGAAAATCG+AGG | - | chr4_1:77415614-77415633 | Msa0574050:intron | 25.0% |
| ! | TGACATGAATTTATGAACAT+CGG | - | chr4_1:77415799-77415818 | Msa0574050:intron | 25.0% |
| !! | TCTATTGTTGGTTGAAATTA+TGG | - | chr4_1:77415893-77415912 | Msa0574050:intron | 25.0% |
| ! | AAATCTAAGTGAAAGTAGAT+TGG | - | chr4_1:77416125-77416144 | Msa0574050:intron | 25.0% |
| ! | TTGATTCTAACATTGTTCAT+AGG | + | chr4_1:77416330-77416349 | None:intergenic | 25.0% |
| !!! | GATACCTTCATATTTTTTGT+CGG | - | chr4_1:77416502-77416521 | Msa0574050:CDS | 25.0% |
| ! | GTCTATTCTATATACAAGAA+TGG | - | chr4_1:77416688-77416707 | Msa0574050:CDS | 25.0% |
| ! | ATACTCCTAAACTTTATAGT+AGG | - | chr4_1:77416717-77416736 | Msa0574050:exon | 25.0% |
| !! | TACATTAACTTGAAGAGATA+GGG | + | chr4_1:77416902-77416921 | None:intergenic | 25.0% |
| !! | TTACATTAACTTGAAGAGAT+AGG | + | chr4_1:77416903-77416922 | None:intergenic | 25.0% |
| GGGAGAAAAAACATAAACAT+GGG | + | chr4_1:77413517-77413536 | None:intergenic | 30.0% | |
| AGGGAGAAAAAACATAAACA+TGG | + | chr4_1:77413518-77413537 | None:intergenic | 30.0% | |
| ! | TGTGTTTTGTATTCAAAGGA+GGG | + | chr4_1:77413537-77413556 | None:intergenic | 30.0% |
| ! | TTGTGTTTTGTATTCAAAGG+AGG | + | chr4_1:77413538-77413557 | None:intergenic | 30.0% |
| TGTGTGTTAGAAGAAGAATA+AGG | - | chr4_1:77413693-77413712 | Msa0574050:three_prime_UTR | 30.0% | |
| AAGAAATCTTACTTTGCAGA+AGG | + | chr4_1:77414130-77414149 | None:intergenic | 30.0% | |
| ! | GTTGAATCTGATGTTTCTTT+TGG | - | chr4_1:77414354-77414373 | Msa0574050:intron | 30.0% |
| !!! | AATCACTTTTGAGACTGTTT+GGG | + | chr4_1:77414743-77414762 | None:intergenic | 30.0% |
| !!! | TAATCACTTTTGAGACTGTT+TGG | + | chr4_1:77414744-77414763 | None:intergenic | 30.0% |
| TCAAATAAGCCAATCCAAAT+AGG | - | chr4_1:77414779-77414798 | Msa0574050:intron | 30.0% | |
| ! | TATATTCTTATGTTAGCCTC+TGG | - | chr4_1:77414822-77414841 | Msa0574050:intron | 30.0% |
| TATGTGCTCTAGTAAATTTC+AGG | - | chr4_1:77414875-77414894 | Msa0574050:intron | 30.0% | |
| AGATTTATATTATCGTGCGT+TGG | + | chr4_1:77415131-77415150 | None:intergenic | 30.0% | |
| TACATATATGCATTCAGACT+TGG | + | chr4_1:77415332-77415351 | None:intergenic | 30.0% | |
| CATATATGTAAAAGTCAGCA+TGG | - | chr4_1:77415342-77415361 | Msa0574050:intron | 30.0% | |
| !!! | TGAATGGTTTTAGCTCTTAT+AGG | - | chr4_1:77415395-77415414 | Msa0574050:intron | 30.0% |
| !!! | GAATGGTTTTAGCTCTTATA+GGG | - | chr4_1:77415396-77415415 | Msa0574050:intron | 30.0% |
| AGATATTTGTGATCATGCAT+CGG | + | chr4_1:77415527-77415546 | None:intergenic | 30.0% | |
| ! | TCAACCATTTTCTCTATTGT+TGG | - | chr4_1:77415881-77415900 | Msa0574050:intron | 30.0% |
| TCAACCAACAATAGAGAAAA+TGG | + | chr4_1:77415888-77415907 | None:intergenic | 30.0% | |
| TGCATGTATTTATATGTCAC+AGG | - | chr4_1:77415939-77415958 | Msa0574050:intron | 30.0% | |
| !! | ATGTTTTTGTTGACAAATCC+AGG | - | chr4_1:77416066-77416085 | Msa0574050:intron | 30.0% |
| ! | CTATAAAGTTTAGGAGTATG+AGG | + | chr4_1:77416716-77416735 | None:intergenic | 30.0% |
| TGATGACAATATATTAGGCA+TGG | - | chr4_1:77416750-77416769 | Msa0574050:five_prime_UTR | 30.0% | |
| !!! | GAACATCATGCTTTGTTTTT+TGG | - | chr4_1:77416961-77416980 | Msa0574050:five_prime_UTR | 30.0% |
| !!! | TTTTTTAGGGTTGTGTTTGG+TGG | + | chr4_1:77413443-77413462 | None:intergenic | 35.0% |
| TTCTCTGATGCTATTACTGA+TGG | - | chr4_1:77413902-77413921 | Msa0574050:intron | 35.0% | |
| TTGTTCTCTCCTAAAGCTAA+AGG | - | chr4_1:77413992-77414011 | Msa0574050:CDS | 35.0% | |
| TGTTCTCTCCTAAAGCTAAA+GGG | - | chr4_1:77413993-77414012 | Msa0574050:CDS | 35.0% | |
| TTGTTATCATGCAAAGGCTT+TGG | + | chr4_1:77414091-77414110 | None:intergenic | 35.0% | |
| !! | TGTGGTTTGTTATCATGCAA+AGG | + | chr4_1:77414097-77414116 | None:intergenic | 35.0% |
| AAATCTTACTTTGCAGAAGG+AGG | + | chr4_1:77414127-77414146 | None:intergenic | 35.0% | |
| ! | TGTAGAAGATCTTCTAGAGA+GGG | + | chr4_1:77414433-77414452 | None:intergenic | 35.0% |
| ! | ATGTAGAAGATCTTCTAGAG+AGG | + | chr4_1:77414434-77414453 | None:intergenic | 35.0% |
| ATAATTAGCAACAACCACCA+AGG | + | chr4_1:77414805-77414824 | None:intergenic | 35.0% | |
| ! | ATACGGTTTTTATGCGAATC+AGG | - | chr4_1:77415218-77415237 | Msa0574050:intron | 35.0% |
| ! | TACGGTTTTTATGCGAATCA+GGG | - | chr4_1:77415219-77415238 | Msa0574050:intron | 35.0% |
| TATGTAAAAGTCAGCATGGA+AGG | - | chr4_1:77415346-77415365 | Msa0574050:intron | 35.0% | |
| CATCAAGACACACAGATAAT+GGG | + | chr4_1:77415498-77415517 | None:intergenic | 35.0% | |
| ACATCAAGACACACAGATAA+TGG | + | chr4_1:77415499-77415518 | None:intergenic | 35.0% | |
| GCATGATCACAAATATCTCT+CGG | - | chr4_1:77415529-77415548 | Msa0574050:intron | 35.0% | |
| CAACTGTACTGTCAAAGTAT+AGG | + | chr4_1:77415775-77415794 | None:intergenic | 35.0% | |
| ! | GAAAGAGAGTGTATTGGTAA+CGG | + | chr4_1:77415863-77415882 | None:intergenic | 35.0% |
| ! | ATGGTTGAAAGAGAGTGTAT+TGG | + | chr4_1:77415869-77415888 | None:intergenic | 35.0% |
| ATCTTCATTCTCAACCATGT+TGG | + | chr4_1:77415986-77416005 | None:intergenic | 35.0% | |
| ! | CAAAGGTATGACTACTGTAT+AGG | + | chr4_1:77416011-77416030 | None:intergenic | 35.0% |
| ! | TAAGCAAAAAAGGCATGCAA+AGG | + | chr4_1:77416028-77416047 | None:intergenic | 35.0% |
| TCTAAGTGAAAGTAGATTGG+TGG | - | chr4_1:77416128-77416147 | Msa0574050:intron | 35.0% | |
| !! | ATGAAGAGTTCTGAAGCAAT+TGG | - | chr4_1:77416437-77416456 | Msa0574050:CDS | 35.0% |
| !! | TGAAGAGTTCTGAAGCAATT+GGG | - | chr4_1:77416438-77416457 | Msa0574050:CDS | 35.0% |
| GAGTCCGACAAAAAATATGA+AGG | + | chr4_1:77416509-77416528 | None:intergenic | 35.0% | |
| CTTGGCCTACTATAAAGTTT+AGG | + | chr4_1:77416725-77416744 | None:intergenic | 35.0% | |
| ! | TAGACGACTACAAGTCATTT+TGG | - | chr4_1:77416775-77416794 | Msa0574050:five_prime_UTR | 35.0% |
| !! | ATTTTGGTGTAGACGTTTCA+AGG | - | chr4_1:77416791-77416810 | Msa0574050:five_prime_UTR | 35.0% |
| ! | TCATTTCGTTTCCTTTTGTC+CGG | - | chr4_1:77416993-77417012 | Msa0574050:five_prime_UTR | 35.0% |
| AAATTCCTTAACCGGACAAA+AGG | + | chr4_1:77417007-77417026 | None:intergenic | 35.0% | |
| !!! | TTTTTTGATGTCTGTGCCAG+TGG | - | chr4_1:77413718-77413737 | Msa0574050:three_prime_UTR | 40.0% |
| TTATGGAGAGGTTCCTTCAA+TGG | - | chr4_1:77413748-77413767 | Msa0574050:three_prime_UTR | 40.0% | |
| ! | CTCTCTTTGGTTTCCATTGA+AGG | + | chr4_1:77413764-77413783 | None:intergenic | 40.0% |
| ! | GAAACCAAAGAGAGAAGCAT+TGG | - | chr4_1:77413770-77413789 | Msa0574050:three_prime_UTR | 40.0% |
| CAAACCAATGCTTCTCTCTT+TGG | + | chr4_1:77413777-77413796 | None:intergenic | 40.0% | |
| TCTGATGCTATTACTGATGG+AGG | - | chr4_1:77413905-77413924 | Msa0574050:intron | 40.0% | |
| CTATTACTGATGGAGGTTCT+GGG | - | chr4_1:77413912-77413931 | Msa0574050:intron | 40.0% | |
| !! | AAGTGGGTTTTGTCTGGAAA+TGG | - | chr4_1:77413935-77413954 | Msa0574050:intron | 40.0% |
| GTTCTCTCCTAAAGCTAAAG+GGG | - | chr4_1:77413994-77414013 | Msa0574050:CDS | 40.0% | |
| TTCTCTCCTAAAGCTAAAGG+GGG | - | chr4_1:77413995-77414014 | Msa0574050:CDS | 40.0% | |
| !! | AAGCAGAGAAAGGGTTTTGT+TGG | + | chr4_1:77414036-77414055 | None:intergenic | 40.0% |
| CAACAACTGAAGCAGAGAAA+GGG | + | chr4_1:77414045-77414064 | None:intergenic | 40.0% | |
| ACAACAACTGAAGCAGAGAA+AGG | + | chr4_1:77414046-77414065 | None:intergenic | 40.0% | |
| TGAGTATGCGGATAATTCAG+AGG | - | chr4_1:77414388-77414407 | Msa0574050:intron | 40.0% | |
| CTGGACAAAATCAAATCCCA+GGG | + | chr4_1:77415042-77415061 | None:intergenic | 40.0% | |
| ACTGGACAAAATCAAATCCC+AGG | + | chr4_1:77415043-77415062 | None:intergenic | 40.0% | |
| AAGACATGGAAAAGGCTAAC+TGG | + | chr4_1:77415061-77415080 | None:intergenic | 40.0% | |
| AGCATCAGAAGACATGGAAA+AGG | + | chr4_1:77415069-77415088 | None:intergenic | 40.0% | |
| TTGAGTTCTTCCGGAAAGAT+CGG | + | chr4_1:77415270-77415289 | None:intergenic | 40.0% | |
| ATCTTTCCGGAAGAACTCAA+TGG | - | chr4_1:77415270-77415289 | Msa0574050:intron | 40.0% | |
| GTGAAACCATTGAGTTCTTC+CGG | + | chr4_1:77415279-77415298 | None:intergenic | 40.0% | |
| ! | GCATCAGCATCATTCTTTTG+AGG | + | chr4_1:77415304-77415323 | None:intergenic | 40.0% |
| AGATCCACTTTCCTCAAGTA+TGG | + | chr4_1:77415376-77415395 | None:intergenic | 40.0% | |
| TTGAGGAAAGTGGATCTGAA+TGG | - | chr4_1:77415379-77415398 | Msa0574050:intron | 40.0% | |
| AATATCTCTCGGTGATGTGA+TGG | - | chr4_1:77415540-77415559 | Msa0574050:intron | 40.0% | |
| AAATCGAGGTGTGTCTTGAA+TGG | - | chr4_1:77415628-77415647 | Msa0574050:intron | 40.0% | |
| ! | TATGTCACAGGTTCTGATTG+TGG | - | chr4_1:77415951-77415970 | Msa0574050:intron | 40.0% |
| AAACTCCATATGAGCCACAT+TGG | + | chr4_1:77416092-77416111 | None:intergenic | 40.0% | |
| GCACATATTCTGAACCATGA+AGG | + | chr4_1:77416158-77416177 | None:intergenic | 40.0% | |
| TGTGCTTACCTATGAAGACA+AGG | - | chr4_1:77416173-77416192 | Msa0574050:intron | 40.0% | |
| CTTACCTATGAAGACAAGGA+TGG | - | chr4_1:77416177-77416196 | Msa0574050:intron | 40.0% | |
| ATCACCATCCTTGTCTTCAT+AGG | + | chr4_1:77416184-77416203 | None:intergenic | 40.0% | |
| ATGAAGACAAGGATGGTGAT+TGG | - | chr4_1:77416184-77416203 | Msa0574050:intron | 40.0% | |
| AGAAAATAGACGTACTCCCA+TGG | + | chr4_1:77416228-77416247 | None:intergenic | 40.0% | |
| ! | GCGACTTTTACATTTCTCCA+TGG | + | chr4_1:77416563-77416582 | None:intergenic | 40.0% |
| ATACATAAGCAAGCGCAAGA+AGG | + | chr4_1:77416661-77416680 | None:intergenic | 40.0% | |
| TAGACGTTTCAAGGCTTCTT+AGG | - | chr4_1:77416800-77416819 | Msa0574050:five_prime_UTR | 40.0% | |
| TCTCCATAACCTTGTTCCAC+TGG | + | chr4_1:77413737-77413756 | None:intergenic | 45.0% | |
| AGTGGAACAAGGTTATGGAG+AGG | - | chr4_1:77413736-77413755 | Msa0574050:three_prime_UTR | 45.0% | |
| ACCTCAAAGCTACTGAACTG+AGG | - | chr4_1:77413798-77413817 | Msa0574050:three_prime_UTR | 45.0% | |
| AAAGCTACTGAACTGAGGCT+AGG | - | chr4_1:77413803-77413822 | Msa0574050:three_prime_UTR | 45.0% | |
| AAGCTACTGAACTGAGGCTA+GGG | - | chr4_1:77413804-77413823 | Msa0574050:three_prime_UTR | 45.0% | |
| GAGTCACCAGAGAGAGAAAA+TGG | - | chr4_1:77413839-77413858 | Msa0574050:three_prime_UTR | 45.0% | |
| TCACCAGAGAGAGAAAATGG+TGG | - | chr4_1:77413842-77413861 | Msa0574050:three_prime_UTR | 45.0% | |
| ! | ACACCACCATTTTCTCTCTC+TGG | + | chr4_1:77413848-77413867 | None:intergenic | 45.0% |
| ! | TGGTGGTGTGCTTAAGAGTT+TGG | - | chr4_1:77413859-77413878 | Msa0574050:exon | 45.0% |
| !! | GTGCTTAAGAGTTTGGTGTC+TGG | - | chr4_1:77413866-77413885 | Msa0574050:exon | 45.0% |
| !! | TTTGGTGTCTGGTGCCAAAA+GGG | - | chr4_1:77413877-77413896 | Msa0574050:CDS | 45.0% |
| ! | AGCATCAGAGAAACCCCTTT+TGG | + | chr4_1:77413894-77413913 | None:intergenic | 45.0% |
| GCTATTACTGATGGAGGTTC+TGG | - | chr4_1:77413911-77413930 | Msa0574050:intron | 45.0% | |
| !! | TGGGTTTTGTCTGGAAATGG+TGG | - | chr4_1:77413938-77413957 | Msa0574050:intron | 45.0% |
| !! | TGGAAATGGTGGATCTGAAG+TGG | - | chr4_1:77413949-77413968 | Msa0574050:intron | 45.0% |
| !! | GGAAATGGTGGATCTGAAGT+GGG | - | chr4_1:77413950-77413969 | Msa0574050:intron | 45.0% |
| !! | GAAATGGTGGATCTGAAGTG+GGG | - | chr4_1:77413951-77413970 | Msa0574050:intron | 45.0% |
| GAAGTGGGGTTGTGTAAAGA+TGG | - | chr4_1:77413965-77413984 | Msa0574050:intron | 45.0% | |
| !! | TCACTACCCCCTTTAGCTTT+AGG | + | chr4_1:77414004-77414023 | None:intergenic | 45.0% |
| GTGTAGAGCAAGTGAGTATG+CGG | - | chr4_1:77414376-77414395 | Msa0574050:intron | 45.0% | |
| TGCGGATAATTCAGAGGAAG+AGG | - | chr4_1:77414394-77414413 | Msa0574050:intron | 45.0% | |
| GCGGATAATTCAGAGGAAGA+GGG | - | chr4_1:77414395-77414414 | Msa0574050:intron | 45.0% | |
| !! | ACTCACTTGTTGATTCGCAC+TGG | - | chr4_1:77414518-77414537 | Msa0574050:intron | 45.0% |
| !! | ACTTGTTGATTCGCACTGGT+TGG | - | chr4_1:77414522-77414541 | Msa0574050:intron | 45.0% |
| AAGCCAATCCAAATAGGCCT+TGG | - | chr4_1:77414785-77414804 | Msa0574050:intron | 45.0% | |
| AACAACCACCAAGGCCTATT+TGG | + | chr4_1:77414796-77414815 | None:intergenic | 45.0% | |
| TTAGCCTCTGGTGTAAAAGC+TGG | - | chr4_1:77414834-77414853 | Msa0574050:intron | 45.0% | |
| AAATCCCAGGGCATACACAA+GGG | + | chr4_1:77415030-77415049 | None:intergenic | 45.0% | |
| CCTTTCAGCATCAGAAGACA+TGG | + | chr4_1:77415075-77415094 | None:intergenic | 45.0% | |
| CCATGTCTTCTGATGCTGAA+AGG | - | chr4_1:77415072-77415091 | Msa0574050:CDS | 45.0% | |
| TTCTTCCGGAAAGATCGGAT+TGG | + | chr4_1:77415265-77415284 | None:intergenic | 45.0% | |
| TGCTCCATACTTGAGGAAAG+TGG | - | chr4_1:77415369-77415388 | Msa0574050:intron | 45.0% | |
| TTCTCAACCATGTTGGCACT+TGG | + | chr4_1:77415979-77415998 | None:intergenic | 45.0% | |
| TTGACAAATCCAGGCCAATG+TGG | - | chr4_1:77416075-77416094 | Msa0574050:intron | 45.0% | |
| ! | AGATTGGTGGATCTCCTTCA+TGG | - | chr4_1:77416141-77416160 | Msa0574050:intron | 45.0% |
| GATGGTGATTGGATGCTAGT+TGG | - | chr4_1:77416195-77416214 | Msa0574050:intron | 45.0% | |
| !! | TGCTAGTTGGTGATGTTCCA+TGG | - | chr4_1:77416208-77416227 | Msa0574050:intron | 45.0% |
| !! | GCTAGTTGGTGATGTTCCAT+GGG | - | chr4_1:77416209-77416228 | Msa0574050:intron | 45.0% |
| !! | AGTTCTGAAGCAATTGGGCT+AGG | - | chr4_1:77416443-77416462 | Msa0574050:CDS | 45.0% |
| TTACATTTCTCCATGGCTCG+AGG | + | chr4_1:77416556-77416575 | None:intergenic | 45.0% | |
| ! | CGTTTCCTTTTGTCCGGTTA+AGG | - | chr4_1:77416999-77417018 | Msa0574050:five_prime_UTR | 45.0% |
| ATGTCTGTGCCAGTGGAACA+AGG | - | chr4_1:77413725-77413744 | Msa0574050:three_prime_UTR | 50.0% | |
| GTGCCAGTGGAACAAGGTTA+TGG | - | chr4_1:77413731-77413750 | Msa0574050:three_prime_UTR | 50.0% | |
| ! | GCCTCAGTTCAGTAGCTTTG+AGG | + | chr4_1:77413802-77413821 | None:intergenic | 50.0% |
| !! | GTTTGGTGTCTGGTGCCAAA+AGG | - | chr4_1:77413876-77413895 | Msa0574050:CDS | 50.0% |
| ! | TTGGTGTCTGGTGCCAAAAG+GGG | - | chr4_1:77413878-77413897 | Msa0574050:CDS | 50.0% |
| !! | TGATGGAGGTTCTGGGAAGT+GGG | - | chr4_1:77413919-77413938 | Msa0574050:intron | 50.0% |
| !! | TCTGGGAAGTGGGTTTTGTC+TGG | - | chr4_1:77413929-77413948 | Msa0574050:intron | 50.0% |
| GCAGAAGGAGGAGAAACATG+TGG | + | chr4_1:77414115-77414134 | None:intergenic | 50.0% | |
| CCACCAAGGCCTATTTGGAT+TGG | + | chr4_1:77414791-77414810 | None:intergenic | 50.0% | |
| CCAATCCAAATAGGCCTTGG+TGG | - | chr4_1:77414788-77414807 | Msa0574050:intron | 50.0% | |
| ! | AACGCCAGCTTTTACACCAG+AGG | + | chr4_1:77414841-77414860 | None:intergenic | 50.0% |
| CAAATCCCAGGGCATACACA+AGG | + | chr4_1:77415031-77415050 | None:intergenic | 50.0% | |
| ! | TTCCGGAAAGATCGGATTGG+AGG | + | chr4_1:77415262-77415281 | None:intergenic | 50.0% |
| !! | TGGAAGGTGCTCCATACTTG+AGG | - | chr4_1:77415362-77415381 | Msa0574050:intron | 50.0% |
| TGTTCACCGAGTCTTGCAAG+AGG | - | chr4_1:77416405-77416424 | Msa0574050:CDS | 50.0% | |
| CCTCAACCTCTTGCAAGACT+CGG | + | chr4_1:77416414-77416433 | None:intergenic | 50.0% | |
| GAACTGAGGCTAGGGTTACC+AGG | - | chr4_1:77413812-77413831 | Msa0574050:three_prime_UTR | 55.0% | |
| !! | CTGATGGAGGTTCTGGGAAG+TGG | - | chr4_1:77413918-77413937 | Msa0574050:intron | 55.0% |
| TTGTGCCCTTGTGTATGCCC+TGG | - | chr4_1:77415022-77415041 | Msa0574050:CDS | 55.0% | |
| TGTGCCCTTGTGTATGCCCT+GGG | - | chr4_1:77415023-77415042 | Msa0574050:CDS | 55.0% | |
| CGAATCAGGGCGCAAGTTGT+GGG | - | chr4_1:77415232-77415251 | Msa0574050:intron | 55.0% | |
| GGCCTCCAATCCGATCTTTC+CGG | - | chr4_1:77415257-77415276 | Msa0574050:intron | 55.0% | |
| ! | TGTGGTGCCAAGTGCCAACA+TGG | - | chr4_1:77415969-77415988 | Msa0574050:intron | 55.0% |
| CCATATGAGCCACATTGGCC+TGG | + | chr4_1:77416087-77416106 | None:intergenic | 55.0% | |
| CCAGGCCAATGTGGCTCATA+TGG | - | chr4_1:77416084-77416103 | Msa0574050:intron | 55.0% | |
| CCGAGTCTTGCAAGAGGTTG+AGG | - | chr4_1:77416411-77416430 | Msa0574050:CDS | 55.0% | |
| CTCTCTGGTGACTCTGAGCC+TGG | + | chr4_1:77413833-77413852 | None:intergenic | 60.0% | |
| GCGAATCAGGGCGCAAGTTG+TGG | - | chr4_1:77415231-77415250 | Msa0574050:intron | 60.0% | |
| TCAGGGCGCAAGTTGTGGGA+TGG | - | chr4_1:77415236-77415255 | Msa0574050:intron | 60.0% | |
| TCCTGCAGCACCTCGAGCCA+TGG | - | chr4_1:77416543-77416562 | Msa0574050:CDS | 65.0% | |
| !! | TCCATGGCTCGAGGTGCTGC+AGG | + | chr4_1:77416547-77416566 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 77413428 | 77417027 | 77413428 | ID=Msa0574050;Name=Msa0574050 |
| chr4_1 | mRNA | 77413428 | 77417027 | 77413428 | ID=Msa0574050-mRNA-1;Parent=Msa0574050;Name=Msa0574050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=297|1|1|1|1|1|5|439|293 |
| chr4_1 | exon | 77413428 | 77413904 | 77413428 | ID=Msa0574050-mRNA-1:exon:27298;Parent=Msa0574050-mRNA-1 |
| chr4_1 | exon | 77413991 | 77414052 | 77413991 | ID=Msa0574050-mRNA-1:exon:27297;Parent=Msa0574050-mRNA-1 |
| chr4_1 | exon | 77414223 | 77414367 | 77414223 | ID=Msa0574050-mRNA-1:exon:27296;Parent=Msa0574050-mRNA-1 |
| chr4_1 | exon | 77414992 | 77415215 | 77414992 | ID=Msa0574050-mRNA-1:exon:27295;Parent=Msa0574050-mRNA-1 |
| chr4_1 | exon | 77416318 | 77417027 | 77416318 | ID=Msa0574050-mRNA-1:exon:27294;Parent=Msa0574050-mRNA-1 |
| chr4_1 | five_prime_UTR | 77416731 | 77417027 | 77416731 | ID=Msa0574050-mRNA-1:five_prime_utr;Parent=Msa0574050-mRNA-1 |
| chr4_1 | CDS | 77416318 | 77416730 | 77416318 | ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1 |
| chr4_1 | CDS | 77414992 | 77415215 | 77414992 | ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1 |
| chr4_1 | CDS | 77414223 | 77414367 | 77414223 | ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1 |
| chr4_1 | CDS | 77413991 | 77414052 | 77413991 | ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1 |
| chr4_1 | CDS | 77413867 | 77413904 | 77413867 | ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1 |
| chr4_1 | three_prime_UTR | 77413428 | 77413866 | 77413428 | ID=Msa0574050-mRNA-1:three_prime_utr;Parent=Msa0574050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
