AlfalfaGEDB | Msa0574050

M. sativa cultivar zhongmu-4 / Msa0574050

KEGG: K14484
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02309.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574050	XP_003630761.1	98.294	293	5	0	1	293	1	293	0.0	591

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574050	sp\|Q9ZSY8\|IAA27_ARATH	55.864	324	91	11	1	293	3	305	6.19e-101	300

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574050	G7L869	98.294	293	5	0	1	293	1	293	0.0	591

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TFs/TRs:

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Gene ID	Type	Classification
Msa0574050	TR	AUX/IAA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0574050	0.836622	8.402448e-57	-8.615850e-47
Msa0002580	Msa0574050	0.824369	8.379223e-54	-8.615850e-47
Msa0017670	Msa0574050	0.827268	1.718629e-54	-8.615850e-47
Msa0019900	Msa0574050	0.805839	1.099568e-49	-8.615850e-47
Msa0025160	Msa0574050	0.825552	4.403964e-54	-8.615850e-47
Msa0032460	Msa0574050	0.812389	4.345317e-51	-8.615850e-47
Msa0034810	Msa0574050	0.812031	5.201836e-51	-8.615850e-47
Msa0035060	Msa0574050	0.818044	2.407396e-52	-8.615850e-47
Msa0035140	Msa0574050	0.800140	1.656958e-48	-8.615850e-47
Msa0036870	Msa0574050	0.806457	8.151348e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574050	MtrunA17_Chr8g0390281	98.294	293	5	0	1	293	1	293	0.0	591
Msa0574050	MtrunA17_Chr6g0486121	61.348	282	57	5	23	293	14	254	5.93e-109	316
Msa0574050	MtrunA17_Chr2g0331411	55.152	330	107	10	1	293	1	326	8.03e-105	308
Msa0574050	MtrunA17_Chr5g0411501	51.274	314	103	10	12	293	40	335	1.29e-95	285
Msa0574050	MtrunA17_Chr8g0366881	50.482	311	107	9	12	293	56	348	1.86e-91	275
Msa0574050	MtrunA17_Chr5g0428141	47.205	322	105	8	12	293	51	347	6.11e-83	253
Msa0574050	MtrunA17_Chr1g0190711	48.571	280	91	8	24	292	15	252	1.15e-72	224
Msa0574050	MtrunA17_Chr1g0187921	47.636	275	95	6	23	293	7	236	1.92e-70	218
Msa0574050	MtrunA17_Chr7g0260641	63.125	160	55	2	135	293	94	250	2.07e-66	207
Msa0574050	MtrunA17_Chr1g0184791	62.424	165	51	4	135	292	84	244	8.22e-65	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574050	AT4G29080.1	55.864	324	91	11	1	293	3	305	6.29e-102	300
Msa0574050	AT2G22670.4	48.993	298	97	7	24	292	64	335	2.19e-84	257
Msa0574050	AT2G22670.3	48.993	298	97	7	24	292	47	318	2.65e-84	256
Msa0574050	AT2G22670.1	48.993	298	97	7	24	292	47	318	2.65e-84	256
Msa0574050	AT2G22670.5	48.322	298	97	8	24	292	47	316	3.60e-81	248
Msa0574050	AT2G22670.2	48.322	298	97	8	24	292	47	316	3.60e-81	248
Msa0574050	AT5G65670.2	46.128	297	110	6	24	292	61	335	5.76e-74	230
Msa0574050	AT5G65670.1	45.819	299	110	7	24	292	61	337	4.15e-72	226
Msa0574050	AT4G14550.1	49.091	275	86	9	24	292	1	227	4.75e-70	216
Msa0574050	AT3G04730.1	45.361	291	80	6	24	292	2	235	4.10e-69	214

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Find 101 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCCATATGAGCCACAT+TGG	0.598333	4_1:+77414344	None:intergenic
AAAGCTACTGAACTGAGGCT+AGG	0.551933	4_1:-77416630	Msa0574050:CDS
AAATCACAAAACAATGTTTG+AGG	0.506846	4_1:+77416789	None:intergenic
AAATCTAAGTGAAAGTAGAT+TGG	0.505003	4_1:-77414308	Msa0574050:CDS
AAATCTTACTTTGCAGAAGG+AGG	0.546311	4_1:+77416309	None:intergenic
AAATTCCTTAACCGGACAAA+AGG	0.496519	4_1:+77413429	None:intergenic
AAGAAATCTTACTTTGCAGA+AGG	0.533764	4_1:+77416306	None:intergenic
AAGCTACTGAACTGAGGCTA+GGG	0.557212	4_1:-77416629	Msa0574050:CDS
ACAACAACTGAAGCAGAGAA+AGG	0.456026	4_1:+77416390	None:intergenic
ACCTCAAAGCTACTGAACTG+AGG	0.714271	4_1:-77416635	Msa0574050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGGAGAAAAAACATAAACAT+GGG	+	chr4_1:77413517-77413536	None:intergenic	30.0%
AGGGAGAAAAAACATAAACA+TGG	+	chr4_1:77413518-77413537	None:intergenic	30.0%
TGTGTGTTAGAAGAAGAATA+AGG	-	chr4_1:77413693-77413712	Msa0574050:three_prime_UTR	30.0%
AAGAAATCTTACTTTGCAGA+AGG	+	chr4_1:77414130-77414149	None:intergenic	30.0%
TCAAATAAGCCAATCCAAAT+AGG	-	chr4_1:77414779-77414798	Msa0574050:intron	30.0%
TATGTGCTCTAGTAAATTTC+AGG	-	chr4_1:77414875-77414894	Msa0574050:intron	30.0%
AGATTTATATTATCGTGCGT+TGG	+	chr4_1:77415131-77415150	None:intergenic	30.0%
TACATATATGCATTCAGACT+TGG	+	chr4_1:77415332-77415351	None:intergenic	30.0%
CATATATGTAAAAGTCAGCA+TGG	-	chr4_1:77415342-77415361	Msa0574050:intron	30.0%
AGATATTTGTGATCATGCAT+CGG	+	chr4_1:77415527-77415546	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	77413428	77417027	77413428	ID=Msa0574050;Name=Msa0574050
chr4_1	mRNA	77413428	77417027	77413428	ID=Msa0574050-mRNA-1;Parent=Msa0574050;Name=Msa0574050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=297\|1\|1\|1\|1\|1\|5\|439\|293
chr4_1	exon	77413428	77413904	77413428	ID=Msa0574050-mRNA-1:exon:27298;Parent=Msa0574050-mRNA-1
chr4_1	exon	77413991	77414052	77413991	ID=Msa0574050-mRNA-1:exon:27297;Parent=Msa0574050-mRNA-1
chr4_1	exon	77414223	77414367	77414223	ID=Msa0574050-mRNA-1:exon:27296;Parent=Msa0574050-mRNA-1
chr4_1	exon	77414992	77415215	77414992	ID=Msa0574050-mRNA-1:exon:27295;Parent=Msa0574050-mRNA-1
chr4_1	exon	77416318	77417027	77416318	ID=Msa0574050-mRNA-1:exon:27294;Parent=Msa0574050-mRNA-1
chr4_1	five_prime_UTR	77416731	77417027	77416731	ID=Msa0574050-mRNA-1:five_prime_utr;Parent=Msa0574050-mRNA-1
chr4_1	CDS	77416318	77416730	77416318	ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1
chr4_1	CDS	77414992	77415215	77414992	ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1
chr4_1	CDS	77414223	77414367	77414223	ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1
chr4_1	CDS	77413991	77414052	77413991	ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1
chr4_1	CDS	77413867	77413904	77413867	ID=Msa0574050-mRNA-1:cds;Parent=Msa0574050-mRNA-1
chr4_1	three_prime_UTR	77413428	77413866	77413428	ID=Msa0574050-mRNA-1:three_prime_utr;Parent=Msa0574050-mRNA-1

Gene Sequence

>Msa0574050

ATGTCTGTGCCAGTGGAACAAGGTTATGGAGAGGTTCCTTCAATGGAAACCAAAGAGAGAAGCATTGGTTTGAACCTCAAAGCTACTGAACTGAGGCTAGGGTTACCAGGCTCAGAGTCACCAGAGAGAGAAAATGGTGGTGTGCTTAAGAGTTTGGTGTCTGGTGCCAAAAGGGGTTTCTCTGATGCTATTACTGATGGAGGTTCTGGGAAGTGGGTTTTGTCTGGAAATGGTGGATCTGAAGTGGGGTTGTGTAAAGATGGAAACTTGTTCTCTCCTAAAGCTAAAGGGGGTAGTGAATGTAATAACCAACAAAACCCTTTCTCTGCTTCAGTTGTTGTTAAAGAAACTGTTACACACTCTCCAAAGCCTTTGCATGATAACAAACCACATGTTTCTCCTCCTTCTGCAAAGGCGCAAGTTGTGGGATGGCCTCCAATCCGATCTTTCCGGAAGAACTCAATGGTTTCACAGCCTCAAAAGAATGATGCTGATGCAGAAGCCAAGTCTGAATGCATATATGTAAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTGAATGGTTTTAGCTCTTATAGGGAACTTTCTTCAGCACTCGAAAAGATGTTCAGTTGTTTTACAATCAGCCAATGTGGCTCATATGGAGTTTCTTGTCGAGAAAAAAATCTAAGTGAAAGTAGATTGGTGGATCTCCTTCATGGTTCAGAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACCGAGTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTCGAGCCATGGAGAAATGTAAAAGTCGCAACTAG

Protein sequence

>Msa0574050

MSVPVEQGYGEVPSMETKERSIGLNLKATELRLGLPGSESPERENGGVLKSLVSGAKRGFSDAITDGGSGKWVLSGNGGSEVGLCKDGNLFSPKAKGGSECNNQQNPFSASVVVKETVTHSPKPLHDNKPHVSPPSAKAQVVGWPPIRSFRKNSMVSQPQKNDADAEAKSECIYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCREKNLSESRLVDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN*