AlfalfaGEDB | Msa0274640

M. sativa cultivar zhongmu-4 / Msa0274640

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009625 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0140096 GO:1901564
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274640	XP_039686219.1	95.157	702	26	3	1	700	1	696	0.0	1344

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274640	sp\|Q9FK63\|CARLK_ARATH	52.246	668	274	15	31	693	34	661	0.0	642

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274640	A0A396J6C4	95.157	702	26	3	1	700	1	696	0.0	1344

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0274640	0.803063	4.168004e-49	-8.615850e-47
Msa0022000	Msa0274640	0.809164	2.166339e-50	-8.615850e-47
Msa0138020	Msa0274640	0.815864	7.431210e-52	-8.615850e-47
Msa0187830	Msa0274640	0.813566	2.399217e-51	-8.615850e-47
Msa0193690	Msa0274640	0.807865	4.102520e-50	-8.615850e-47
Msa0231060	Msa0274640	0.819872	9.245429e-53	-8.615850e-47
Msa0270060	Msa0274640	0.806591	7.635166e-50	-8.615850e-47
Msa0274640	Msa0278580	0.808601	2.858184e-50	-8.615850e-47
Msa0274640	Msa0314070	0.897317	1.580291e-76	-8.615850e-47
Msa0274640	Msa0321080	0.803025	4.244934e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274640	MtrunA17_Chr2g0284041	95.157	702	26	3	1	700	1	696	0.0	1344
Msa0274640	MtrunA17_Chr8g0379161	60.515	699	196	14	1	694	1	624	0.0	770
Msa0274640	MtrunA17_Chr4g0074031	38.348	678	329	23	87	695	191	848	8.92e-119	375
Msa0274640	MtrunA17_Chr1g0169841	28.006	707	350	20	54	698	485	1094	2.00e-58	214
Msa0274640	MtrunA17_Chr3g0079661	27.312	703	370	20	62	694	561	1192	5.20e-54	201
Msa0274640	MtrunA17_Chr3g0129391	26.918	717	394	21	50	700	505	1157	2.70e-53	199
Msa0274640	MtrunA17_Chr1g0203631	34.441	331	161	5	393	693	964	1268	4.82e-53	198
Msa0274640	MtrunA17_Chr8g0375511	26.454	722	393	20	51	695	468	1128	4.95e-52	195
Msa0274640	MtrunA17_Chr8g0345561	27.473	728	400	25	24	696	431	1085	5.29e-52	194
Msa0274640	MtrunA17_Chr2g0312651	27.914	695	339	25	62	692	488	1084	2.13e-50	190

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274640	AT5G45800.1	52.246	668	274	15	31	693	34	661	0.0	642
Msa0274640	AT5G45800.2	46.934	473	217	11	24	494	27	467	2.92e-126	384
Msa0274640	AT2G24230.1	34.813	721	364	22	40	697	174	851	4.52e-111	355
Msa0274640	AT5G58150.1	31.489	705	355	21	59	695	139	783	3.26e-82	277
Msa0274640	AT5G07280.1	29.173	713	369	20	32	693	565	1192	3.26e-65	234
Msa0274640	AT1G55610.1	28.220	691	378	22	50	693	518	1137	3.09e-62	226
Msa0274640	AT1G55610.1	32.124	193	116	6	59	244	203	387	1.53e-11	68.6
Msa0274640	AT1G55610.2	28.220	691	378	22	50	693	518	1137	3.09e-62	226
Msa0274640	AT1G55610.2	32.124	193	116	6	59	244	203	387	1.53e-11	68.6
Msa0274640	AT3G13380.1	27.566	682	378	18	58	693	524	1135	5.27e-59	216

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Find 171 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAACCTTATATCAA+AGG	0.573170	2_3:+6491428	Msa0274640:CDS
AAACTAGGGAAGGGAAATGT+TGG	0.460169	2_3:+6494657	Msa0274640:three_prime_UTR
AAAGATATTCATCCGAGAGC+TGG	0.479240	2_3:+6494349	Msa0274640:CDS
AAAGATTCTCAGCTAGCTGA+AGG	0.588956	2_3:+6492620	Msa0274640:CDS
AAAGGTGGACAAAATGAAGT+GGG	0.551203	2_3:+6494629	Msa0274640:three_prime_UTR
AAATATCAATGAATGCCTTA+TGG	0.273223	2_3:+6494696	Msa0274640:three_prime_UTR
AACAACTGTCTCCGCTGTAC+CGG	0.477793	2_3:-6494152	None:intergenic
AACAACTTCATCAAGAAATT+TGG	0.156303	2_3:+6492101	Msa0274640:CDS
AACATGCATTTAAGCGTTTG+AGG	0.419387	2_3:+6494486	Msa0274640:three_prime_UTR
AACCCAAAATCAGCAATTCG+AGG	0.573755	2_3:-6494034	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGTATTATACTTGAGAGA+AGG	-	chr2_3:6491281-6491300	None:intergenic	30.0%
AGAATCAAGAACCTACAAAA+GGG	-	chr2_3:6491360-6491379	None:intergenic	30.0%
AAGAATCAAGAACCTACAAA+AGG	-	chr2_3:6491361-6491380	None:intergenic	30.0%
TTAGAGTTTCTTGATCTTTC+AGG	+	chr2_3:6491600-6491619	Msa0274640:CDS	30.0%
ACAAAACCCATTTCTCAAAA+TGG	+	chr2_3:6491729-6491748	Msa0274640:CDS	30.0%
ATCTCAATCTTTCACATAAC+AGG	+	chr2_3:6491781-6491800	Msa0274640:CDS	30.0%
TAGATCAAGGTAGTTAAGTT+TGG	-	chr2_3:6491907-6491926	None:intergenic	30.0%
TGTTACAGTTTGATAGATCA+AGG	-	chr2_3:6491920-6491939	None:intergenic	30.0%
CTATCAAACTGTAACATCAT+AGG	+	chr2_3:6491924-6491943	Msa0274640:CDS	30.0%
GAGTGAAGTAAGATAAGAAA+TGG	-	chr2_3:6491961-6491980	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	6491120	6494805	6491120	ID=Msa0274640;Name=Msa0274640
chr2_3	mRNA	6491120	6494805	6491120	ID=Msa0274640-mRNA-1;Parent=Msa0274640;Name=Msa0274640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=231\|1\|1\|1\|1\|1\|2\|424\|700
chr2_3	exon	6491120	6492812	6491120	ID=Msa0274640-mRNA-1:exon:3049;Parent=Msa0274640-mRNA-1
chr2_3	exon	6493741	6494805	6493741	ID=Msa0274640-mRNA-1:exon:3050;Parent=Msa0274640-mRNA-1
chr2_3	five_prime_UTR	6491120	6491350	6491120	ID=Msa0274640-mRNA-1:five_prime_utr;Parent=Msa0274640-mRNA-1
chr2_3	CDS	6491351	6492812	6491351	ID=Msa0274640-mRNA-1:cds;Parent=Msa0274640-mRNA-1
chr2_3	CDS	6493741	6494381	6493741	ID=Msa0274640-mRNA-1:cds;Parent=Msa0274640-mRNA-1
chr2_3	three_prime_UTR	6494382	6494805	6494382	ID=Msa0274640-mRNA-1:three_prime_utr;Parent=Msa0274640-mRNA-1

Gene Sequence

>Msa0274640

ATGAAACCCTTTTGTAGGTTCTTGATTCTTCTAACACTTATTACTCTCACACAATCATCAACTTCATGCAACAATGAAAACAAGAACCTTATATCAAAGGCTTTTCAATCTGTCACAGGATTCAACACTTCCTTATTCCAAACAAGAGGCTTCTTCAACTGTTCAAAGGGTCAAATTAACATCATAGAACTTCCATCAAAAAACTTGAGTGGAAACATCTCATGGAGATATCTAAGAAACATGACAAACTTAGAGTTTCTTGATCTTTCAGGTAATTATCTACAAGGTCAAGTACCAAACTGGTTTTGGTCAAGTAGTTCAAAATTATCAACTGTGAATCTCTCAAATAACAGATTTGGTGGAACCATTGCATTCAAAACAAAACCCATTTCTCAAAATGGTTCAACTTTCAAGTTTTCTTCACTACAAAATCTCAATCTTTCACATAACAGGTTCACTAATCAACTTCATCTTTCATTGTTTCAAAACCTTGAAATCCTTGACCTTTCAGACAACAACCTTAACACTCTACCTTCAGGTTTTCAAAACCTTACCAAACTTAACTACCTTGATCTATCAAACTGTAACATCATAGGAAACATCAAACCCATTTCTTATCTTACTTCACTCTCTTTCTTAAACCTTTCAAACAACTCTTTGAATGGTAGTTTTCCGTCTGATTTTCCTTCTCTAAACAACCTTAAATTCCTCAACATCTCAAACAACAACTTCAAATCTTCAACTTCTCTAAACAACTTCATCAAGAAATTTGGAAAATCATCGTTCATTCATAATAACTTCAATCTCAACCACTACAATACAACCAAAAAACCAAATATTCATTCAAATTCAATATCAACTATACAACATCACCACCACCAACAACTTCATGTGACAAAGACAAAACCCATTCAAACAAAACCAAAACACAAACAAAAGTCAAAAACAAAAACCATGATTACTGTAGCAGTTACCTCGGCGTCAACGCTTATTTTTGTCGTATTATGTCTATGTGCATTTTTTGGTTACAGAAGAAAAAGAAAACTAGCTCAAAAAAACAAATGGGCAATTTCAATATCAAAACCAATGACAGGATTAACAACAACCGTTAAGATGGAGAAATCTGGACCGTTTGAATTTGAGACAGAATCTGGAACATCATGGGTAGCTGATCTAAAAGAACCAACTTCAGCATCAGTTGTCATGTTTGAGAAACCTTTGATGAACATTAGTTTCATGGATCTTATGAATGCCACGTCATATTTTGGGAAAGATTCTCAGCTAGCTGAAGGTAGATGTGGGCCCGTTTATCGTGCTGTTTTACCTGGGGAGTTACACGTGGCAATTAAGGTTCTTGAAAATGCTAGAGATGTTGATCATGATGATGCTGTTGATACTTTTGTTGACTTGTCCAAGCTTAAACATCCTAATCTCTTGCCACTTTCTGGTTATTGCATTGCAGGGAAGGAAAAGCTAGTGTTGCATGAGTTTATGTCAAACGGAGATTTAGGCAGATGGTTGCACGAGCTACCGACGGGTGAGACTAATGTGGAGGACTGGAGTAGCGACACATGGGAGATTCAAAACGGCACCGGTTCACGAGCATCATCACCAGAAAAAATGGGGTGGCCAACACGACACCGTATCGCTCTAGGAGTAGCGCGTGGTCTAGCATTTCTCCACCATGCAGGATCAAGGCCCGTCGTTCATGGACATCTAGTAACATCAAACGTCCTACTAGCCGATGACTTTGAGCCTCGAATTGCTGATTTTGGGTTTCGAAAATTCGGACAACAATGTCCTCCAAACTGCAGCACCGAAACAGACGTTTACTGTTTCGGTGTAGTGCTTATGGAGCTTCTAACGGGGAAGCCCGGTACAGCGGAGACAGTTGTTTGGGTGAGGAAGCTTGTAAGAGAAAGTCATGGAGTGAGGGCGCTTGACGATAGACTCAAACTAAGTGGTGGTGACTCAGAGAGTCAAATGGTGGAGAGTCTCCGAGTTGCGTACCTTTGTACTGCTGAGTCACCCGGGAAGAGGCCCACTATGCAGCAAGTTTTGGGTCTTCTCAAAGATATTCATCCGAGAGCTGGACTCGAATGA

Protein sequence

>Msa0274640

MKPFCRFLILLTLITLTQSSTSCNNENKNLISKAFQSVTGFNTSLFQTRGFFNCSKGQINIIELPSKNLSGNISWRYLRNMTNLEFLDLSGNYLQGQVPNWFWSSSSKLSTVNLSNNRFGGTIAFKTKPISQNGSTFKFSSLQNLNLSHNRFTNQLHLSLFQNLEILDLSDNNLNTLPSGFQNLTKLNYLDLSNCNIIGNIKPISYLTSLSFLNLSNNSLNGSFPSDFPSLNNLKFLNISNNNFKSSTSLNNFIKKFGKSSFIHNNFNLNHYNTTKKPNIHSNSISTIQHHHHQQLHVTKTKPIQTKPKHKQKSKTKTMITVAVTSASTLIFVVLCLCAFFGYRRKRKLAQKNKWAISISKPMTGLTTTVKMEKSGPFEFETESGTSWVADLKEPTSASVVMFEKPLMNISFMDLMNATSYFGKDSQLAEGRCGPVYRAVLPGELHVAIKVLENARDVDHDDAVDTFVDLSKLKHPNLLPLSGYCIAGKEKLVLHEFMSNGDLGRWLHELPTGETNVEDWSSDTWEIQNGTGSRASSPEKMGWPTRHRIALGVARGLAFLHHAGSRPVVHGHLVTSNVLLADDFEPRIADFGFRKFGQQCPPNCSTETDVYCFGVVLMELLTGKPGTAETVVWVRKLVRESHGVRALDDRLKLSGGDSESQMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPRAGLE*