AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031710 MtrunA17_Chr2g0322181 97.170 106 3 0 6 111 312 417 1.90e-70 216
Msa0031710 MtrunA17_Chr4g0025401 83.178 107 17 1 6 111 310 416 1.23e-57 183
Msa0031710 MtrunA17_Chr8g0334811 55.556 108 44 2 8 111 316 423 8.54e-29 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031710 AT5G22060.1 71.028 107 30 1 6 111 313 419 2.97e-50 164
Msa0031710 AT3G44110.1 74.312 109 25 1 6 111 312 420 7.25e-49 160

Find 51 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTCGTTTAACTTCTTCT+TGG 0.271886 1_1:+58471319 None:intergenic
CCGTATAAAGATATCCTATA+TGG 0.308033 1_1:-58471386 Msa0031710:three_prime_UTR
GCTGCAGCTGCTAAGATATC+TGG 0.346053 1_1:-58472448 Msa0031710:five_prime_UTR
CCATATAGGATATCTTTATA+CGG 0.354474 1_1:+58471386 None:intergenic
TCTTGATCAAGTTAAGGCTT+TGG 0.362512 1_1:-58471728 Msa0031710:CDS
TATGACAGATTGACAGTGTT+AGG 0.365841 1_1:-58472658 Msa0031710:intron
ACCTTTGGTGATGTCCTTCA+TGG 0.388723 1_1:-58471488 Msa0031710:three_prime_UTR
ATGTCTGTCAACTGTGATAC+AGG 0.396053 1_1:+58471685 None:intergenic
ATGAAAGGTCTCTGGTACAT+TGG 0.419417 1_1:+58471802 None:intergenic
TGCCTTTCATGAAAGGTCTC+TGG 0.420757 1_1:+58471794 None:intergenic
TCTAGTAAAATTAACCATAT+AGG 0.426616 1_1:+58471372 None:intergenic
GTGCTCAGCAGTAATGAGTT+TGG 0.430118 1_1:-58471528 Msa0031710:exon
TCTAACTCTTGATCAAGTTA+AGG 0.430606 1_1:-58471734 Msa0031710:CDS
TAAAGTTTGCCTTTCATGAA+AGG 0.465962 1_1:+58471787 None:intergenic
TAGGTGACGTCGCAACGGAT+TGG 0.483349 1_1:-58472639 Msa0031710:five_prime_UTR
ATGTGCTGTGGTAGAACCTT+TGG 0.500206 1_1:-58471503 Msa0031710:three_prime_UTR
GAAAGACCCGTGCGGTAGCA+CGG 0.501371 1_1:+58471341 None:intergenic
AGTGATTGATTTGTCTGCCA+TGG 0.502442 1_1:-58472256 Msa0031710:exon
TGATCAAGAGTTAGAGACTC+AGG 0.503504 1_1:+58471742 None:intergenic
CTTTGTTGGGCTAAACATAG+TGG 0.503747 1_1:-58471454 Msa0031710:three_prime_UTR
TACAAGGCAATCAATGATGA+AGG 0.521364 1_1:-58471829 Msa0031710:CDS
AAAGACCCGTGCGGTAGCAC+GGG 0.529287 1_1:+58471342 None:intergenic
GGTTATTGCAGATTCTTACA+AGG 0.535096 1_1:-58471845 Msa0031710:intron
TGGAGACAATTCTGCTAGCA+AGG 0.536832 1_1:-58471708 Msa0031710:CDS
CATTTAGGGAGACCTTTGCT+CGG 0.544280 1_1:+58472804 None:intergenic
TGTCGGTAGAATTACGACTT+TGG 0.548516 1_1:+58472849 None:intergenic
GATGAAAGTACGTGTGGTGT+CGG 0.556069 1_1:+58472832 None:intergenic
TTGAAGAAGAGACAAGAAGA+AGG 0.558667 1_1:-58471618 Msa0031710:CDS
ATATCTGGACAAGATAATAG+AGG 0.572023 1_1:-58472433 Msa0031710:intron
CTTGACCCGTGCTACCGCAC+GGG 0.574961 1_1:-58471347 Msa0031710:three_prime_UTR
TCAATCACTAAAGTAGCCGT+TGG 0.577975 1_1:+58472270 None:intergenic
TACCAGAGACCTTTCATGAA+AGG 0.585044 1_1:-58471796 Msa0031710:CDS
AGTGTTAGGTGACGTCGCAA+CGG 0.585928 1_1:-58472644 Msa0031710:five_prime_UTR
TCTTGACCCGTGCTACCGCA+CGG 0.591669 1_1:-58471348 Msa0031710:three_prime_UTR
AAGCTAAAACACATCCATGA+AGG 0.592582 1_1:+58471474 None:intergenic
TTTCATCGTGAGCCGAGCAA+AGG 0.595395 1_1:-58472816 Msa0031710:intron
ACAGTTGACAGACATGGAGC+TGG 0.595684 1_1:-58471677 Msa0031710:CDS
CTTACTTGCTAACAACTCCA+TGG 0.600422 1_1:+58472239 None:intergenic
AAGAAGTTTACGTGCTCCAA+CGG 0.607092 1_1:-58472286 Msa0031710:five_prime_UTR
TGTACTCTTTGAGCACCACC+AGG 0.609997 1_1:+58471553 None:intergenic
GATGAAGATGATGAGATGCC+TGG 0.615030 1_1:-58471571 Msa0031710:CDS
AAGGCAGCAAGCTCAGCAAG+AGG 0.624868 1_1:-58471599 Msa0031710:CDS
TGTATCACAGTTGACAGACA+TGG 0.631121 1_1:-58471683 Msa0031710:CDS
GATCAAGAGTTAGAGACTCA+GGG 0.641976 1_1:+58471743 None:intergenic
ATGAGTTTGGAGATGTGCTG+TGG 0.657658 1_1:-58471515 Msa0031710:three_prime_UTR
TCCATGAAGGACATCACCAA+AGG 0.666733 1_1:+58471487 None:intergenic
CATGGAGCTGGATGAGTGTG+AGG 0.667513 1_1:-58471665 Msa0031710:CDS
ACTTTACATTAATTTCACTG+TGG 0.705139 1_1:-58471770 Msa0031710:CDS
GCTCACGATGAAAGTACGTG+TGG 0.708305 1_1:+58472826 None:intergenic
GAAGATGATGAGATGCCTGG+TGG 0.783796 1_1:-58471568 Msa0031710:CDS
TCTTCTTGGAAAGACCCGTG+CGG 0.796231 1_1:+58471333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGACTAAATTATTTTATT+AGG - chr1_1:58471445-58471464 Msa0031710:three_prime_UTR 10.0%
!!! ATTGTGTTTTTAATTTTTTA+TGG - chr1_1:58472083-58472102 Msa0031710:intron 10.0%
!!! ATTGACTAAATTATTTTATT+AGG - chr1_1:58471445-58471464 Msa0031710:three_prime_UTR 10.0%
!!! ATTGTGTTTTTAATTTTTTA+TGG - chr1_1:58472083-58472102 Msa0031710:intron 10.0%
!!! TACTAAAAATTTCCAATTTT+TGG - chr1_1:58472304-58472323 Msa0031710:intron 15.0%
!! AGAAGTCATATAAAAATTAA+AGG - chr1_1:58472905-58472924 Msa0031710:five_prime_UTR 15.0%
!!! TACTAAAAATTTCCAATTTT+TGG - chr1_1:58472304-58472323 Msa0031710:intron 15.0%
!!! GACTAAATTATTTTATTAGG+TGG - chr1_1:58471448-58471467 Msa0031710:three_prime_UTR 20.0%
!! AAAATTGCTCAGATTATTAA+AGG + chr1_1:58471689-58471708 None:intergenic 20.0%
!!! TGCTAAAAATTTAGAACTAA+AGG + chr1_1:58471997-58472016 None:intergenic 20.0%
!!! AAGAATTTTCATATATGAAC+AGG + chr1_1:58472118-58472137 None:intergenic 20.0%
!! TCTAGTAAAATTAACCATAT+AGG + chr1_1:58472801-58472820 None:intergenic 20.0%
!!! GACTAAATTATTTTATTAGG+TGG - chr1_1:58471448-58471467 Msa0031710:three_prime_UTR 20.0%
!! AAAATTGCTCAGATTATTAA+AGG + chr1_1:58471689-58471708 None:intergenic 20.0%
!!! TGCTAAAAATTTAGAACTAA+AGG + chr1_1:58471997-58472016 None:intergenic 20.0%
!!! AAGAATTTTCATATATGAAC+AGG + chr1_1:58472118-58472137 None:intergenic 20.0%
!! TCTAGTAAAATTAACCATAT+AGG + chr1_1:58472801-58472820 None:intergenic 20.0%
!! ATAATAGAGGTATATTGCAA+TGG - chr1_1:58471750-58471769 Msa0031710:CDS 25.0%
!! TCTATAGGATTTGAGATTTA+AGG - chr1_1:58472203-58472222 Msa0031710:intron 25.0%
!! TGAGTGATTGAAATTTTGTT+TGG - chr1_1:58472275-58472294 Msa0031710:five_prime_UTR 25.0%
!!! ATTGAAATTTTGTTTGGCTT+TGG - chr1_1:58472281-58472300 Msa0031710:five_prime_UTR 25.0%
! AATCTGCAATAACCAAAAAT+TGG + chr1_1:58472319-58472338 None:intergenic 25.0%
! ACTTTACATTAATTTCACTG+TGG - chr1_1:58472400-58472419 Msa0031710:intron 25.0%
! CCATATAGGATATCTTTATA+CGG + chr1_1:58472787-58472806 None:intergenic 25.0%
!! TTATTCGTTTAACTTCTTCT+TGG + chr1_1:58472854-58472873 None:intergenic 25.0%
!! ATAATAGAGGTATATTGCAA+TGG - chr1_1:58471750-58471769 Msa0031710:CDS 25.0%
!! TCTATAGGATTTGAGATTTA+AGG - chr1_1:58472203-58472222 Msa0031710:intron 25.0%
!! TGAGTGATTGAAATTTTGTT+TGG - chr1_1:58472275-58472294 Msa0031710:five_prime_UTR 25.0%
!!! ATTGAAATTTTGTTTGGCTT+TGG - chr1_1:58472281-58472300 Msa0031710:five_prime_UTR 25.0%
! AATCTGCAATAACCAAAAAT+TGG + chr1_1:58472319-58472338 None:intergenic 25.0%
! ACTTTACATTAATTTCACTG+TGG - chr1_1:58472400-58472419 Msa0031710:intron 25.0%
! CCATATAGGATATCTTTATA+CGG + chr1_1:58472787-58472806 None:intergenic 25.0%
!! TTATTCGTTTAACTTCTTCT+TGG + chr1_1:58472854-58472873 None:intergenic 25.0%
CAAGAGTAGCAAAAATTACT+AGG - chr1_1:58471274-58471293 Msa0031710:three_prime_UTR 30.0%
CGTACAACTACATTCATTTA+GGG + chr1_1:58471383-58471402 None:intergenic 30.0%
ACGTACAACTACATTCATTT+AGG + chr1_1:58471384-58471403 None:intergenic 30.0%
TTAGTCAATAAAAACCCTGT+AGG + chr1_1:58471434-58471453 None:intergenic 30.0%
CCAAATTGAAAGACATTCAA+CGG + chr1_1:58471593-58471612 None:intergenic 30.0%
! TAATCTGAGCAATTTTATGC+AGG - chr1_1:58471693-58471712 Msa0031710:CDS 30.0%
! AATCTGAGCAATTTTATGCA+GGG - chr1_1:58471694-58471713 Msa0031710:CDS 30.0%
ATATCTGGACAAGATAATAG+AGG - chr1_1:58471737-58471756 Msa0031710:CDS 30.0%
! TTGTTAGCAAGTAAGTTTTG+TGG - chr1_1:58471939-58471958 Msa0031710:intron 30.0%
!!! TTTTTTTTCTCTCTGACATC+TGG - chr1_1:58472228-58472247 Msa0031710:intron 30.0%
TAAAGTTTGCCTTTCATGAA+AGG + chr1_1:58472386-58472405 None:intergenic 30.0%
TCTAACTCTTGATCAAGTTA+AGG - chr1_1:58472436-58472455 Msa0031710:five_prime_UTR 30.0%
CCGTATAAAGATATCCTATA+TGG - chr1_1:58472784-58472803 Msa0031710:intron 30.0%
CAAGAGTAGCAAAAATTACT+AGG - chr1_1:58471274-58471293 Msa0031710:three_prime_UTR 30.0%
CGTACAACTACATTCATTTA+GGG + chr1_1:58471383-58471402 None:intergenic 30.0%
ACGTACAACTACATTCATTT+AGG + chr1_1:58471384-58471403 None:intergenic 30.0%
TTAGTCAATAAAAACCCTGT+AGG + chr1_1:58471434-58471453 None:intergenic 30.0%
CCAAATTGAAAGACATTCAA+CGG + chr1_1:58471593-58471612 None:intergenic 30.0%
! TAATCTGAGCAATTTTATGC+AGG - chr1_1:58471693-58471712 Msa0031710:CDS 30.0%
! AATCTGAGCAATTTTATGCA+GGG - chr1_1:58471694-58471713 Msa0031710:CDS 30.0%
ATATCTGGACAAGATAATAG+AGG - chr1_1:58471737-58471756 Msa0031710:CDS 30.0%
! TTGTTAGCAAGTAAGTTTTG+TGG - chr1_1:58471939-58471958 Msa0031710:intron 30.0%
!!! TTTTTTTTCTCTCTGACATC+TGG - chr1_1:58472228-58472247 Msa0031710:intron 30.0%
TAAAGTTTGCCTTTCATGAA+AGG + chr1_1:58472386-58472405 None:intergenic 30.0%
TCTAACTCTTGATCAAGTTA+AGG - chr1_1:58472436-58472455 Msa0031710:five_prime_UTR 30.0%
CCGTATAAAGATATCCTATA+TGG - chr1_1:58472784-58472803 Msa0031710:intron 30.0%
!! ACAGAATGTTTTTGCCTACA+GGG - chr1_1:58471417-58471436 Msa0031710:three_prime_UTR 35.0%
TATGACAGATTGACAGTGTT+AGG - chr1_1:58471512-58471531 Msa0031710:three_prime_UTR 35.0%
!! ACGGTATTCAGTTTTGTATC+CGG + chr1_1:58471574-58471593 None:intergenic 35.0%
CCGTTGAATGTCTTTCAATT+TGG - chr1_1:58471590-58471609 Msa0031710:CDS 35.0%
AGGTGTGAGGTAATGTAAAA+TGG + chr1_1:58471669-58471688 None:intergenic 35.0%
! CTCAGATTATTAAAGGTGTG+AGG + chr1_1:58471682-58471701 None:intergenic 35.0%
! AACCCAACTTGATAATACCA+AGG - chr1_1:58472165-58472184 Msa0031710:intron 35.0%
! ACCCAACTTGATAATACCAA+GGG - chr1_1:58472166-58472185 Msa0031710:intron 35.0%
GGTTATTGCAGATTCTTACA+AGG - chr1_1:58472325-58472344 Msa0031710:intron 35.0%
TACAAGGCAATCAATGATGA+AGG - chr1_1:58472341-58472360 Msa0031710:intron 35.0%
TCTTGATCAAGTTAAGGCTT+TGG - chr1_1:58472442-58472461 Msa0031710:five_prime_UTR 35.0%
TTGAAGAAGAGACAAGAAGA+AGG - chr1_1:58472552-58472571 Msa0031710:intron 35.0%
AAGCTAAAACACATCCATGA+AGG + chr1_1:58472699-58472718 None:intergenic 35.0%
!!! TGGATGTGTTTTAGCTTTGT+TGG - chr1_1:58472702-58472721 Msa0031710:intron 35.0%
!!! GGATGTGTTTTAGCTTTGTT+GGG - chr1_1:58472703-58472722 Msa0031710:intron 35.0%
!! ACAGAATGTTTTTGCCTACA+GGG - chr1_1:58471417-58471436 Msa0031710:three_prime_UTR 35.0%
TATGACAGATTGACAGTGTT+AGG - chr1_1:58471512-58471531 Msa0031710:three_prime_UTR 35.0%
!! ACGGTATTCAGTTTTGTATC+CGG + chr1_1:58471574-58471593 None:intergenic 35.0%
CCGTTGAATGTCTTTCAATT+TGG - chr1_1:58471590-58471609 Msa0031710:CDS 35.0%
AGGTGTGAGGTAATGTAAAA+TGG + chr1_1:58471669-58471688 None:intergenic 35.0%
! CTCAGATTATTAAAGGTGTG+AGG + chr1_1:58471682-58471701 None:intergenic 35.0%
! AACCCAACTTGATAATACCA+AGG - chr1_1:58472165-58472184 Msa0031710:intron 35.0%
! ACCCAACTTGATAATACCAA+GGG - chr1_1:58472166-58472185 Msa0031710:intron 35.0%
GGTTATTGCAGATTCTTACA+AGG - chr1_1:58472325-58472344 Msa0031710:intron 35.0%
TACAAGGCAATCAATGATGA+AGG - chr1_1:58472341-58472360 Msa0031710:intron 35.0%
TCTTGATCAAGTTAAGGCTT+TGG - chr1_1:58472442-58472461 Msa0031710:five_prime_UTR 35.0%
TTGAAGAAGAGACAAGAAGA+AGG - chr1_1:58472552-58472571 Msa0031710:intron 35.0%
AAGCTAAAACACATCCATGA+AGG + chr1_1:58472699-58472718 None:intergenic 35.0%
!!! TGGATGTGTTTTAGCTTTGT+TGG - chr1_1:58472702-58472721 Msa0031710:intron 35.0%
!!! GGATGTGTTTTAGCTTTGTT+GGG - chr1_1:58472703-58472722 Msa0031710:intron 35.0%
TGTCGGTAGAATTACGACTT+TGG + chr1_1:58471324-58471343 None:intergenic 40.0%
!! CACAGAATGTTTTTGCCTAC+AGG - chr1_1:58471416-58471435 Msa0031710:three_prime_UTR 40.0%
! GGAAAAAAGGTACACATCAC+CGG - chr1_1:58471552-58471571 Msa0031710:CDS 40.0%
TGGAGTAGAATCATATGCAC+AGG + chr1_1:58471649-58471668 None:intergenic 40.0%
GAGGTATATTGCAATGGTGT+TGG - chr1_1:58471756-58471775 Msa0031710:CDS 40.0%
AAGAAGTTTACGTGCTCCAA+CGG - chr1_1:58471884-58471903 Msa0031710:intron 40.0%
TCAATCACTAAAGTAGCCGT+TGG + chr1_1:58471903-58471922 None:intergenic 40.0%
!! AGTGATTGATTTGTCTGCCA+TGG - chr1_1:58471914-58471933 Msa0031710:intron 40.0%
! CTTACTTGCTAACAACTCCA+TGG + chr1_1:58471934-58471953 None:intergenic 40.0%
ATGTGTATGTTGTCGCAGAT+TGG - chr1_1:58472042-58472061 Msa0031710:intron 40.0%
GCCCTTGGTATTATCAAGTT+GGG + chr1_1:58472170-58472189 None:intergenic 40.0%
GCGACATCAAATGCTTCTAT+AGG - chr1_1:58472188-58472207 Msa0031710:intron 40.0%
ATGAAAGGTCTCTGGTACAT+TGG + chr1_1:58472371-58472390 None:intergenic 40.0%
TACCAGAGACCTTTCATGAA+AGG - chr1_1:58472374-58472393 Msa0031710:intron 40.0%
GATCAAGAGTTAGAGACTCA+GGG + chr1_1:58472430-58472449 None:intergenic 40.0%
TGATCAAGAGTTAGAGACTC+AGG + chr1_1:58472431-58472450 None:intergenic 40.0%
ATGTCTGTCAACTGTGATAC+AGG + chr1_1:58472488-58472507 None:intergenic 40.0%
TGTATCACAGTTGACAGACA+TGG - chr1_1:58472487-58472506 Msa0031710:intron 40.0%
CTTTGTTGGGCTAAACATAG+TGG - chr1_1:58472716-58472735 Msa0031710:intron 40.0%
TGTCGGTAGAATTACGACTT+TGG + chr1_1:58471324-58471343 None:intergenic 40.0%
!! CACAGAATGTTTTTGCCTAC+AGG - chr1_1:58471416-58471435 Msa0031710:three_prime_UTR 40.0%
! GGAAAAAAGGTACACATCAC+CGG - chr1_1:58471552-58471571 Msa0031710:CDS 40.0%
TGGAGTAGAATCATATGCAC+AGG + chr1_1:58471649-58471668 None:intergenic 40.0%
GAGGTATATTGCAATGGTGT+TGG - chr1_1:58471756-58471775 Msa0031710:CDS 40.0%
AAGAAGTTTACGTGCTCCAA+CGG - chr1_1:58471884-58471903 Msa0031710:intron 40.0%
TCAATCACTAAAGTAGCCGT+TGG + chr1_1:58471903-58471922 None:intergenic 40.0%
!! AGTGATTGATTTGTCTGCCA+TGG - chr1_1:58471914-58471933 Msa0031710:intron 40.0%
! CTTACTTGCTAACAACTCCA+TGG + chr1_1:58471934-58471953 None:intergenic 40.0%
ATGTGTATGTTGTCGCAGAT+TGG - chr1_1:58472042-58472061 Msa0031710:intron 40.0%
GCCCTTGGTATTATCAAGTT+GGG + chr1_1:58472170-58472189 None:intergenic 40.0%
GCGACATCAAATGCTTCTAT+AGG - chr1_1:58472188-58472207 Msa0031710:intron 40.0%
ATGAAAGGTCTCTGGTACAT+TGG + chr1_1:58472371-58472390 None:intergenic 40.0%
TACCAGAGACCTTTCATGAA+AGG - chr1_1:58472374-58472393 Msa0031710:intron 40.0%
GATCAAGAGTTAGAGACTCA+GGG + chr1_1:58472430-58472449 None:intergenic 40.0%
TGATCAAGAGTTAGAGACTC+AGG + chr1_1:58472431-58472450 None:intergenic 40.0%
ATGTCTGTCAACTGTGATAC+AGG + chr1_1:58472488-58472507 None:intergenic 40.0%
TGTATCACAGTTGACAGACA+TGG - chr1_1:58472487-58472506 Msa0031710:intron 40.0%
CTTTGTTGGGCTAAACATAG+TGG - chr1_1:58472716-58472735 Msa0031710:intron 40.0%
! GATGAAAGTACGTGTGGTGT+CGG + chr1_1:58471341-58471360 None:intergenic 45.0%
CATTTAGGGAGACCTTTGCT+CGG + chr1_1:58471369-58471388 None:intergenic 45.0%
!! GTCGCAACGGATTGGAAAAA+AGG - chr1_1:58471539-58471558 Msa0031710:CDS 45.0%
! ATCCGAGAGCATGCTTGAAT+AGG - chr1_1:58471780-58471799 Msa0031710:CDS 45.0%
CTCCTATTCAAGCATGCTCT+CGG + chr1_1:58471785-58471804 None:intergenic 45.0%
CATGCTTGAATAGGAGGTGA+TGG - chr1_1:58471789-58471808 Msa0031710:CDS 45.0%
!!! CTGTTTTGGTTGCTGCTATG+AGG - chr1_1:58471832-58471851 Msa0031710:CDS 45.0%
CGCCCTTGGTATTATCAAGT+TGG + chr1_1:58472171-58472190 None:intergenic 45.0%
TGCCTTTCATGAAAGGTCTC+TGG + chr1_1:58472379-58472398 None:intergenic 45.0%
TGGAGACAATTCTGCTAGCA+AGG - chr1_1:58472462-58472481 Msa0031710:intron 45.0%
GATGAAGATGATGAGATGCC+TGG - chr1_1:58472599-58472618 Msa0031710:intron 45.0%
GTGCTCAGCAGTAATGAGTT+TGG - chr1_1:58472642-58472661 Msa0031710:five_prime_UTR 45.0%
ATGAGTTTGGAGATGTGCTG+TGG - chr1_1:58472655-58472674 Msa0031710:intron 45.0%
ATGTGCTGTGGTAGAACCTT+TGG - chr1_1:58472667-58472686 Msa0031710:intron 45.0%
!! ACCTTTGGTGATGTCCTTCA+TGG - chr1_1:58472682-58472701 Msa0031710:intron 45.0%
TCCATGAAGGACATCACCAA+AGG + chr1_1:58472686-58472705 None:intergenic 45.0%
! GATGAAAGTACGTGTGGTGT+CGG + chr1_1:58471341-58471360 None:intergenic 45.0%
CATTTAGGGAGACCTTTGCT+CGG + chr1_1:58471369-58471388 None:intergenic 45.0%
!! GTCGCAACGGATTGGAAAAA+AGG - chr1_1:58471539-58471558 Msa0031710:CDS 45.0%
! ATCCGAGAGCATGCTTGAAT+AGG - chr1_1:58471780-58471799 Msa0031710:CDS 45.0%
CTCCTATTCAAGCATGCTCT+CGG + chr1_1:58471785-58471804 None:intergenic 45.0%
CATGCTTGAATAGGAGGTGA+TGG - chr1_1:58471789-58471808 Msa0031710:CDS 45.0%
!!! CTGTTTTGGTTGCTGCTATG+AGG - chr1_1:58471832-58471851 Msa0031710:CDS 45.0%
CGCCCTTGGTATTATCAAGT+TGG + chr1_1:58472171-58472190 None:intergenic 45.0%
TGCCTTTCATGAAAGGTCTC+TGG + chr1_1:58472379-58472398 None:intergenic 45.0%
TGGAGACAATTCTGCTAGCA+AGG - chr1_1:58472462-58472481 Msa0031710:intron 45.0%
GATGAAGATGATGAGATGCC+TGG - chr1_1:58472599-58472618 Msa0031710:intron 45.0%
GTGCTCAGCAGTAATGAGTT+TGG - chr1_1:58472642-58472661 Msa0031710:five_prime_UTR 45.0%
ATGAGTTTGGAGATGTGCTG+TGG - chr1_1:58472655-58472674 Msa0031710:intron 45.0%
ATGTGCTGTGGTAGAACCTT+TGG - chr1_1:58472667-58472686 Msa0031710:intron 45.0%
!! ACCTTTGGTGATGTCCTTCA+TGG - chr1_1:58472682-58472701 Msa0031710:intron 45.0%
TCCATGAAGGACATCACCAA+AGG + chr1_1:58472686-58472705 None:intergenic 45.0%
! GCTCACGATGAAAGTACGTG+TGG + chr1_1:58471347-58471366 None:intergenic 50.0%
TTTCATCGTGAGCCGAGCAA+AGG - chr1_1:58471354-58471373 Msa0031710:three_prime_UTR 50.0%
TCTGTGGGCTTGACAGTGTT+GGG - chr1_1:58471483-58471502 Msa0031710:three_prime_UTR 50.0%
AGTGTTAGGTGACGTCGCAA+CGG - chr1_1:58471526-58471545 Msa0031710:exon 50.0%
GCTGCAGCTGCTAAGATATC+TGG - chr1_1:58471722-58471741 Msa0031710:CDS 50.0%
! CGAGAGCATGCTTGAATAGG+AGG - chr1_1:58471783-58471802 Msa0031710:CDS 50.0%
! CTTGAATAGGAGGTGATGGC+TGG - chr1_1:58471793-58471812 Msa0031710:CDS 50.0%
CCAAAACAGTCCTCTCCACA+AGG + chr1_1:58471821-58471840 None:intergenic 50.0%
! CCTTGTGGAGAGGACTGTTT+TGG - chr1_1:58471818-58471837 Msa0031710:CDS 50.0%
! GAAGCATTTGATGTCGCCCT+TGG + chr1_1:58472185-58472204 None:intergenic 50.0%
ACAGTTGACAGACATGGAGC+TGG - chr1_1:58472493-58472512 Msa0031710:intron 50.0%
GAAGATGATGAGATGCCTGG+TGG - chr1_1:58472602-58472621 Msa0031710:intron 50.0%
TGTACTCTTTGAGCACCACC+AGG + chr1_1:58472620-58472639 None:intergenic 50.0%
TCTTCTTGGAAAGACCCGTG+CGG + chr1_1:58472840-58472859 None:intergenic 50.0%
! GCTCACGATGAAAGTACGTG+TGG + chr1_1:58471347-58471366 None:intergenic 50.0%
TTTCATCGTGAGCCGAGCAA+AGG - chr1_1:58471354-58471373 Msa0031710:three_prime_UTR 50.0%
TCTGTGGGCTTGACAGTGTT+GGG - chr1_1:58471483-58471502 Msa0031710:three_prime_UTR 50.0%
AGTGTTAGGTGACGTCGCAA+CGG - chr1_1:58471526-58471545 Msa0031710:exon 50.0%
GCTGCAGCTGCTAAGATATC+TGG - chr1_1:58471722-58471741 Msa0031710:CDS 50.0%
! CGAGAGCATGCTTGAATAGG+AGG - chr1_1:58471783-58471802 Msa0031710:CDS 50.0%
! CTTGAATAGGAGGTGATGGC+TGG - chr1_1:58471793-58471812 Msa0031710:CDS 50.0%
CCAAAACAGTCCTCTCCACA+AGG + chr1_1:58471821-58471840 None:intergenic 50.0%
! CCTTGTGGAGAGGACTGTTT+TGG - chr1_1:58471818-58471837 Msa0031710:CDS 50.0%
! GAAGCATTTGATGTCGCCCT+TGG + chr1_1:58472185-58472204 None:intergenic 50.0%
ACAGTTGACAGACATGGAGC+TGG - chr1_1:58472493-58472512 Msa0031710:intron 50.0%
GAAGATGATGAGATGCCTGG+TGG - chr1_1:58472602-58472621 Msa0031710:intron 50.0%
TGTACTCTTTGAGCACCACC+AGG + chr1_1:58472620-58472639 None:intergenic 50.0%
TCTTCTTGGAAAGACCCGTG+CGG + chr1_1:58472840-58472859 None:intergenic 50.0%
TGGTGTAAGTGCGCCTCTGT+GGG - chr1_1:58471468-58471487 Msa0031710:three_prime_UTR 55.0%
CAACACTGTCAAGCCCACAG+AGG + chr1_1:58471484-58471503 None:intergenic 55.0%
CTCTGTGGGCTTGACAGTGT+TGG - chr1_1:58471482-58471501 Msa0031710:three_prime_UTR 55.0%
TAGGTGACGTCGCAACGGAT+TGG - chr1_1:58471531-58471550 Msa0031710:exon 55.0%
CATGGAGCTGGATGAGTGTG+AGG - chr1_1:58472505-58472524 Msa0031710:intron 55.0%
AAGGCAGCAAGCTCAGCAAG+AGG - chr1_1:58472571-58472590 Msa0031710:intron 55.0%
TGGTGTAAGTGCGCCTCTGT+GGG - chr1_1:58471468-58471487 Msa0031710:three_prime_UTR 55.0%
CAACACTGTCAAGCCCACAG+AGG + chr1_1:58471484-58471503 None:intergenic 55.0%
CTCTGTGGGCTTGACAGTGT+TGG - chr1_1:58471482-58471501 Msa0031710:three_prime_UTR 55.0%
TAGGTGACGTCGCAACGGAT+TGG - chr1_1:58471531-58471550 Msa0031710:exon 55.0%
CATGGAGCTGGATGAGTGTG+AGG - chr1_1:58472505-58472524 Msa0031710:intron 55.0%
AAGGCAGCAAGCTCAGCAAG+AGG - chr1_1:58472571-58472590 Msa0031710:intron 55.0%
GTGGTGTAAGTGCGCCTCTG+TGG - chr1_1:58471467-58471486 Msa0031710:three_prime_UTR 60.0%
! AGGTGATGGCTGGTGCCTTG+TGG - chr1_1:58471803-58471822 Msa0031710:CDS 60.0%
ATGGCTGGTGCCTTGTGGAG+AGG - chr1_1:58471808-58471827 Msa0031710:CDS 60.0%
TCTTGACCCGTGCTACCGCA+CGG - chr1_1:58472822-58472841 Msa0031710:five_prime_UTR 60.0%
AAAGACCCGTGCGGTAGCAC+GGG + chr1_1:58472831-58472850 None:intergenic 60.0%
GAAAGACCCGTGCGGTAGCA+CGG + chr1_1:58472832-58472851 None:intergenic 60.0%
GTGGTGTAAGTGCGCCTCTG+TGG - chr1_1:58471467-58471486 Msa0031710:three_prime_UTR 60.0%
! AGGTGATGGCTGGTGCCTTG+TGG - chr1_1:58471803-58471822 Msa0031710:CDS 60.0%
ATGGCTGGTGCCTTGTGGAG+AGG - chr1_1:58471808-58471827 Msa0031710:CDS 60.0%
TCTTGACCCGTGCTACCGCA+CGG - chr1_1:58472822-58472841 Msa0031710:five_prime_UTR 60.0%
AAAGACCCGTGCGGTAGCAC+GGG + chr1_1:58472831-58472850 None:intergenic 60.0%
GAAAGACCCGTGCGGTAGCA+CGG + chr1_1:58472832-58472851 None:intergenic 60.0%
CTTGACCCGTGCTACCGCAC+GGG - chr1_1:58472823-58472842 Msa0031710:five_prime_UTR 65.0%
CTTGACCCGTGCTACCGCAC+GGG - chr1_1:58472823-58472842 Msa0031710:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 58471268 58472924 58471268 ID=Msa0031710;Name=Msa0031710
chr1_1 mRNA 58471268 58472924 58471268 ID=Msa0031710-mRNA-1;Parent=Msa0031710;Name=Msa0031710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=252|0.75|0.6|1|0.5|0.6|5|269|111
chr1_1 exon 58471268 58471856 58471268 ID=Msa0031710-mRNA-1:exon:17851;Parent=Msa0031710-mRNA-1
chr1_1 exon 58472244 58472318 58472244 ID=Msa0031710-mRNA-1:exon:17850;Parent=Msa0031710-mRNA-1
chr1_1 exon 58472434 58472477 58472434 ID=Msa0031710-mRNA-1:exon:17849;Parent=Msa0031710-mRNA-1
chr1_1 exon 58472632 58472672 58472632 ID=Msa0031710-mRNA-1:exon:17848;Parent=Msa0031710-mRNA-1
chr1_1 exon 58472817 58472924 58472817 ID=Msa0031710-mRNA-1:exon:17847;Parent=Msa0031710-mRNA-1
chr1_1 five_prime_UTR 58472817 58472924 58472817 ID=Msa0031710-mRNA-1:five_prime_utr;Parent=Msa0031710-mRNA-1
chr1_1 five_prime_UTR 58472632 58472672 58472632 ID=Msa0031710-mRNA-1:five_prime_utr;Parent=Msa0031710-mRNA-1
chr1_1 five_prime_UTR 58472434 58472477 58472434 ID=Msa0031710-mRNA-1:five_prime_utr;Parent=Msa0031710-mRNA-1
chr1_1 five_prime_UTR 58472260 58472318 58472260 ID=Msa0031710-mRNA-1:five_prime_utr;Parent=Msa0031710-mRNA-1
chr1_1 CDS 58472244 58472259 58472244 ID=Msa0031710-mRNA-1:cds;Parent=Msa0031710-mRNA-1
chr1_1 CDS 58471537 58471856 58471537 ID=Msa0031710-mRNA-1:cds;Parent=Msa0031710-mRNA-1
chr1_1 three_prime_UTR 58471268 58471536 58471268 ID=Msa0031710-mRNA-1:three_prime_utr;Parent=Msa0031710-mRNA-1
Gene Sequence

>Msa0031710

ATGGAGTTGTTAGCAAATTCTTACAAGGCAATCAATGATGAAGGAATGCCAATGTACCAGAGACCTTTCATGAAAGGCAAACTTTACATTAATTTCACTGTGGAGTTCCCTGAGTCTCTAACTCTTGATCAAGTTAAGGCTTTGGAGACAATTCTGCTAGCAAGGCCTGTATCACAGTTGACAGACATGGAGCTGGATGAGTGTGAGGAGACAACACTTCATGACGTCAACATTGAAGAAGAGACAAGAAGAAGGCAGCAAGCTCAGCAAGAGGCATATGATGAAGATGATGAGATGCCTGGTGGTGCTCAAAGAGTACAGTGTGCTCAGCAGTAA
Protein sequence

>Msa0031710

MELLANSYKAINDEGMPMYQRPFMKGKLYINFTVEFPESLTLDQVKALETILLARPVSQLTDMELDECEETTLHDVNIEEETRRRQQAQQEAYDEDDEMPGGAQRVQCAQQ*