AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1054990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054990 MtrunA17_Chr7g0225691 96.914 486 3 1 1 486 1 474 0.0 952
Msa1054990 MtrunA17_Chr4g0057631 82.110 436 65 2 51 486 31 453 0.0 730
Msa1054990 MtrunA17_Chr3g0102981 73.922 487 106 5 1 486 1 467 0.0 724
Msa1054990 MtrunA17_Chr5g0447081 71.162 482 124 2 5 486 3 469 0.0 702
Msa1054990 MtrunA17_Chr6g0457931 73.294 337 77 2 150 486 11 334 0.0 510
Msa1054990 MtrunA17_Chr4g0008941 29.189 185 118 4 302 484 108 281 1.83e-16 79.7
Msa1054990 MtrunA17_Chr8g0368541 24.581 179 126 3 55 233 67 236 1.40e-13 72.8
Msa1054990 MtrunA17_Chr5g0409821 28.125 160 112 2 110 269 137 293 4.30e-13 70.9
Msa1054990 MtrunA17_Chr4g0061971 24.581 179 126 3 55 233 72 241 7.24e-13 70.9
Msa1054990 MtrunA17_Chr4g0037431 24.022 179 127 3 55 233 91 260 8.97e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054990 AT5G40870.1 83.030 495 63 2 1 486 1 483 0.0 823
Msa1054990 AT3G27190.1 81.076 502 60 4 1 486 1 483 0.0 813
Msa1054990 AT4G26510.3 74.274 482 108 4 5 486 3 468 0.0 721
Msa1054990 AT4G26510.2 74.274 482 108 4 5 486 3 468 0.0 721
Msa1054990 AT4G26510.4 74.274 482 108 4 5 486 3 468 0.0 721
Msa1054990 AT4G26510.1 74.274 482 108 4 5 486 3 468 0.0 721
Msa1054990 AT1G55810.3 74.105 475 104 2 12 486 10 465 0.0 719
Msa1054990 AT1G55810.1 74.105 475 104 2 12 486 10 465 0.0 719
Msa1054990 AT1G55810.6 74.105 475 104 2 12 486 10 465 0.0 719
Msa1054990 AT1G55810.5 70.825 497 104 3 12 486 10 487 0.0 708
Msa1054990 AT1G55810.4 70.825 497 104 3 12 486 10 487 0.0 708
Msa1054990 AT1G55810.2 73.053 475 104 3 12 486 10 460 0.0 704
Msa1054990 AT1G55810.7 73.718 468 99 3 19 486 7 450 0.0 699
Msa1054990 AT3G27440.1 75.057 437 96 2 50 486 26 449 0.0 675
Msa1054990 AT3G27440.3 74.699 415 92 2 72 486 1 402 0.0 638
Msa1054990 AT3G27440.2 75.128 390 84 2 50 439 26 402 0.0 595
Msa1054990 AT3G53900.1 31.973 147 98 2 341 485 80 226 8.10e-16 77.4
Msa1054990 AT3G53900.2 29.570 186 118 4 302 485 117 291 3.30e-15 76.6
Msa1054990 AT1G73980.1 26.816 179 122 3 55 233 67 236 1.53e-14 76.6
Msa1054990 AT1G73980.3 26.816 179 122 3 55 233 67 236 1.53e-14 76.6
Msa1054990 AT1G73980.2 26.816 179 122 3 55 233 67 236 1.53e-14 76.6
Msa1054990 AT1G26190.2 23.270 318 206 10 55 347 67 371 3.50e-13 72.0
Msa1054990 AT1G32060.1 29.375 160 110 2 110 269 122 278 4.37e-13 71.2
Msa1054990 AT1G26190.3 23.270 318 206 10 55 347 67 371 4.73e-13 71.6
Msa1054990 AT1G26190.6 23.529 323 199 12 55 347 67 371 4.73e-13 72.0
Msa1054990 AT1G26190.1 25.698 179 124 3 55 233 67 236 5.46e-13 72.0
Msa1054990 AT1G26190.4 23.529 323 199 12 55 347 67 371 8.24e-13 70.9
Msa1054990 AT1G26190.5 24.632 272 165 10 106 347 14 275 2.69e-11 66.2

Find 117 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATAGTTCAGCGGTTATT+TGG 0.170707 7_2:+28124850 Msa1054990:three_prime_UTR
TTGATAGAGAGAGAAGATTT+TGG 0.190169 7_2:-28117208 None:intergenic
TGTTGTAAAGGCATTAAAAT+TGG 0.197653 7_2:+28123089 Msa1054990:CDS
ATCCCTGGGTTGGGTGAATT+TGG 0.239695 7_2:+28124577 Msa1054990:CDS
GTGCTTCTTGAAGTCGTAAA+TGG 0.239913 7_2:-28118763 None:intergenic
GAATCCATTGTGTTTGTAAA+AGG 0.261946 7_2:+28124491 Msa1054990:CDS
GGTGATGGTGCAGGTGTTTC+CGG 0.265259 7_2:+28117349 Msa1054990:intron
TTAAATAAGGTTCATATTAC+AGG 0.270995 7_2:+28122732 Msa1054990:intron
ATTGAATTACTTATTCAAAA+AGG 0.286019 7_2:+28124335 Msa1054990:CDS
TTGATTGAGAAGAGAATCTT+TGG 0.314425 7_2:-28117242 None:intergenic
TGATCCTTCAACATGTCTTT+TGG 0.316775 7_2:+28124625 Msa1054990:exon
TGAACATGCTCCAACTCTTC+TGG 0.317119 7_2:-28117818 None:intergenic
TACTCACAGAAATGAGATTC+AGG 0.317310 7_2:-28124382 None:intergenic
TGCCTCTGATGTCATTATAT+TGG 0.323005 7_2:+28120192 Msa1054990:CDS
TACGCCATGGAAGCAGCATC+TGG 0.329184 7_2:+28117136 Msa1054990:CDS
GTGGATGCAAACTCATTCTT+TGG 0.353406 7_2:+28124749 Msa1054990:three_prime_UTR
ATTCACCGGGATGGAGATAA+TGG 0.355599 7_2:+28123122 Msa1054990:CDS
ACATCAGCATATTTCTTTGA+TGG 0.356864 7_2:-28121300 None:intergenic
TGTTATTCAATCTACATTCC+AGG 0.375352 7_2:+28121431 Msa1054990:CDS
CTTGACCCTGTGCTTGCTAC+AGG 0.378127 7_2:+28123309 Msa1054990:CDS
TTTGTCTCGGTCACTCAGTA+TGG 0.398796 7_2:-28117075 None:intergenic
GATTGAATAACATAAACATT+TGG 0.402656 7_2:-28121420 None:intergenic
CATAAACTCTGTTCTTGAAA+TGG 0.406856 7_2:+28121062 Msa1054990:CDS
TCGTGTTGTCCTTGTCAATC+AGG 0.412715 7_2:+28117432 Msa1054990:CDS
CTCATTCTCATATATATCAT+TGG 0.417690 7_2:-28116964 None:intergenic
AAGCAAGTTGTCACTCCAAC+AGG 0.428007 7_2:+28122540 Msa1054990:CDS
AAGTAATTCAATTGCTTGGT+TGG 0.429215 7_2:-28124324 None:intergenic
AGGAATATAATGTGGGATTC+TGG 0.429839 7_2:-28124362 None:intergenic
TGAGAAGAGAATCTTTGGTT+AGG 0.432587 7_2:-28117237 None:intergenic
ACCACCTTGGCTGCAATTTG+AGG 0.438200 7_2:+28124706 Msa1054990:three_prime_UTR
ATTACAGGATCTGTCTATAC+TGG 0.440355 7_2:+28122747 Msa1054990:CDS
GTTTCCGGTGGAACTGCGTC+TGG 0.448056 7_2:+28117364 Msa1054990:CDS
ATCGTTTGTGTTGTTTGTCT+CGG 0.448529 7_2:-28117088 None:intergenic
CAGGTTGTTGAGCATGGTCT+AGG 0.451922 7_2:+28122498 Msa1054990:intron
GTGGTGTTTCAATTATTAGA+AGG 0.454798 7_2:+28122793 Msa1054990:CDS
GGATGGAGATAATGGAAAAC+AGG 0.462347 7_2:+28123130 Msa1054990:CDS
TTTCGTGTTATCCCTGGGTT+GGG 0.467068 7_2:+28124568 Msa1054990:CDS
GGGCCCAGATGCTGCTTCCA+TGG 0.469197 7_2:-28117140 None:intergenic
GATGTCACAATCTTCAATGA+TGG 0.470850 7_2:-28124517 None:intergenic
GAATAAGTAATTCAATTGCT+TGG 0.474790 7_2:-28124328 None:intergenic
TGCTTCTTGAAGTCGTAAAT+GGG 0.476606 7_2:-28118762 None:intergenic
CGGCATCAGGTTGTTGAGCA+TGG 0.477472 7_2:+28122492 Msa1054990:intron
GATCGTTTAATTAATAGCTT+CGG 0.479663 7_2:-28117004 None:intergenic
GATGAGTTTCGTGTTATCCC+TGG 0.484651 7_2:+28124562 Msa1054990:CDS
GAATTTGGTGATCGGTACTT+TGG 0.484890 7_2:+28124592 Msa1054990:CDS
TAGACGTGACACAGTGGAAA+GGG 0.487962 7_2:+28121032 Msa1054990:CDS
GCACTTCGTGCATGTTGTAA+AGG 0.490105 7_2:+28123077 Msa1054990:CDS
ATGGCGTTCTGAGATATCCT+TGG 0.493806 7_2:-28123277 None:intergenic
CTCTGATGTCATTATATTGG+AGG 0.494319 7_2:+28120195 Msa1054990:CDS
GCCGCCGTCGAGACGGAGGC+CGG 0.502355 7_2:-28117170 None:intergenic
GTTTCGTGTTATCCCTGGGT+TGG 0.503902 7_2:+28124567 Msa1054990:CDS
TCGATCGAACTTGTTTCGTC+CGG 0.509815 7_2:-28117112 None:intergenic
ATATTATAGTGGTGAGAGCA+TGG 0.510645 7_2:+28123049 Msa1054990:intron
GATCACGGACATCTTGATCA+TGG 0.511967 7_2:-28120231 None:intergenic
TGGCGTTCTGAGATATCCTT+GGG 0.512001 7_2:-28123276 None:intergenic
CGGGTTGAAACCAGAAGAGT+TGG 0.515899 7_2:+28117808 Msa1054990:CDS
TTCTGATCGACTTATTCGCC+TGG 0.517950 7_2:+28122386 Msa1054990:CDS
TGAGATTCAGGAATATAATG+TGG 0.519868 7_2:-28124370 None:intergenic
TTATCGAATGTATATGATGA+TGG 0.521215 7_2:+28124802 Msa1054990:three_prime_UTR
GAGAAGAGACGAATAACAAA+GGG 0.522452 7_2:-28117265 None:intergenic
TCTTCACCTGTAGCAAGCAC+AGG 0.522707 7_2:-28123315 None:intergenic
CTTGCCTCAAATTGCAGCCA+AGG 0.522945 7_2:-28124710 None:intergenic
GGTTGGGTGAATTTGGTGAT+CGG 0.527041 7_2:+28124584 Msa1054990:CDS
GAGACGGAGGCCGGAGAAGT+GGG 0.529653 7_2:-28117161 None:intergenic
GATTTCTGCAAGAAATTATG+TGG 0.532266 7_2:+28122774 Msa1054990:CDS
AACGGCAAGAACCGAGTACA+AGG 0.532524 7_2:-28122574 None:intergenic
CAATCATCTCTCCTTGTACT+CGG 0.537075 7_2:+28122563 Msa1054990:CDS
CAACACATCCGCACCAAGCT+TGG 0.537928 7_2:+28121372 Msa1054990:CDS
CGAGACGGAGGCCGGAGAAG+TGG 0.540275 7_2:-28117162 None:intergenic
ACAAACAACACAAACGATGC+CGG 0.546541 7_2:+28117093 Msa1054990:exon
TCCACCAAAAGACATGTTGA+AGG 0.548001 7_2:-28124629 None:intergenic
ATGTTTATATTTCAGATAAG+GGG 0.553285 7_2:+28122309 Msa1054990:intron
TTCTCCGGCCTCCGTCTCGA+CGG 0.561954 7_2:+28117166 Msa1054990:CDS
ACGCCATGGAAGCAGCATCT+GGG 0.562938 7_2:+28117137 Msa1054990:CDS
GAGATTCAGGAATATAATGT+GGG 0.564471 7_2:-28124369 None:intergenic
TAGATCATGTTGACCAAGCT+TGG 0.566984 7_2:-28121385 None:intergenic
AGAACAAAGTCATCAAAAGC+AGG 0.569382 7_2:-28121276 None:intergenic
ATGAGTTTCGTGTTATCCCT+GGG 0.572329 7_2:+28124563 Msa1054990:CDS
CAAACACAATGGATTCCCTC+AGG 0.573675 7_2:-28124484 None:intergenic
AGAGAAGAGACGAATAACAA+AGG 0.575321 7_2:-28117266 None:intergenic
AGAGTCGGCCGCCGTCGAGA+CGG 0.579249 7_2:-28117177 None:intergenic
TTATGTTTCCAGGCTCCTGA+GGG 0.584546 7_2:+28124469 Msa1054990:intron
GACAATTATATATAGTTCAG+CGG 0.586012 7_2:+28124842 Msa1054990:three_prime_UTR
ATATTTAGCAAATACCACCT+TGG 0.588077 7_2:+28124693 Msa1054990:three_prime_UTR
TCACCAAATTCACCCAACCC+AGG 0.591016 7_2:-28124580 None:intergenic
AAAATTCTGATTCACCGGGA+TGG 0.592498 7_2:+28123113 Msa1054990:CDS
GAAAACTATCAGAAGAGCGT+TGG 0.596804 7_2:-28118785 None:intergenic
TGTTTATATTTCAGATAAGG+GGG 0.598011 7_2:+28122310 Msa1054990:intron
TCTGATGTCATTATATTGGA+GGG 0.600404 7_2:+28120196 Msa1054990:CDS
AAGGAGAGATGATTGCCTGT+TGG 0.600989 7_2:-28122555 None:intergenic
CTCCAATATAATGACATCAG+AGG 0.606825 7_2:-28120194 None:intergenic
TGTTGTAGATGCTTTCGACA+CGG 0.614727 7_2:+28118686 Msa1054990:intron
AATGATCATATCACAAACAG+TGG 0.616105 7_2:-28117392 None:intergenic
AAGTTCGATCGACTACGCCA+TGG 0.617385 7_2:+28117123 Msa1054990:CDS
CACCAAATTCACCCAACCCA+GGG 0.617414 7_2:-28124579 None:intergenic
CTTCACCTGTAGCAAGCACA+GGG 0.617737 7_2:-28123314 None:intergenic
CATGTTGAAGGATCAATCAT+CGG 0.618402 7_2:-28124617 None:intergenic
TTAGACGTGACACAGTGGAA+AGG 0.619684 7_2:+28121031 Msa1054990:CDS
ATAATTGTCTACATTAGTAG+AGG 0.619774 7_2:-28124828 None:intergenic
AGACGGAGGCCGGAGAAGTG+GGG 0.624092 7_2:-28117160 None:intergenic
TCTTCATGTTCATCAGATCA+CGG 0.627836 7_2:-28120246 None:intergenic
AAGCAGATTAGAATAATATG+TGG 0.630458 7_2:+28124730 Msa1054990:three_prime_UTR
TTTATGTTTCCAGGCTCCTG+AGG 0.632851 7_2:+28124468 Msa1054990:intron
CAGGGTCAAGAAGCAAGACA+TGG 0.641615 7_2:-28123296 None:intergenic
AGACGTGACACAGTGGAAAG+GGG 0.654286 7_2:+28121033 Msa1054990:CDS
GCCTCAAATTGCAGCCAAGG+TGG 0.655090 7_2:-28124707 None:intergenic
GTGTTGTGTAATCAAATCGA+TGG 0.661508 7_2:-28121355 None:intergenic
GATGGTGCAGGTGTTTCCGG+TGG 0.667654 7_2:+28117352 Msa1054990:intron
TATATATGAGAAGCTTCCCA+AGG 0.669802 7_2:+28123260 Msa1054990:CDS
TGTATGAAGAAGCTCATCAG+TGG 0.670248 7_2:+28118723 Msa1054990:CDS
CATGTTGACCAAGCTTGGTG+CGG 0.693702 7_2:-28121380 None:intergenic
TGCATACAGATGCTGATGTG+AGG 0.696375 7_2:+28120995 Msa1054990:intron
TAGAATTAGACGTGACACAG+TGG 0.697175 7_2:+28121026 Msa1054990:CDS
TGCAATGTACCTGATTGACA+AGG 0.715770 7_2:-28117441 None:intergenic
GCTGATGTGATCATTCCTCG+TGG 0.746285 7_2:+28121315 Msa1054990:CDS
GATGTGATCATTCCTCGTGG+AGG 0.762955 7_2:+28121318 Msa1054990:CDS
ACATGATTATCACCTCCACG+AGG 0.804217 7_2:-28121330 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAAAAATAATTTTTGATA+TGG - chr7_2:28119510-28119529 None:intergenic 10.0%
!! TATCATTAAATAATGAATAA+AGG + chr7_2:28119786-28119805 Msa1054990:intron 10.0%
!!! ATTTTTGTTAAATATGATAT+CGG + chr7_2:28120029-28120048 Msa1054990:intron 10.0%
!! ACTATATTATTATTCATTGA+AGG - chr7_2:28117623-28117642 None:intergenic 15.0%
!!! TTAAAATAATTTTACATCGA+CGG - chr7_2:28117669-28117688 None:intergenic 15.0%
!!! TTTTTTACTTTTTATTGTGT+AGG + chr7_2:28117772-28117791 Msa1054990:intron 15.0%
!! ATGAGAAATTTAAAAACATT+GGG + chr7_2:28119118-28119137 Msa1054990:intron 15.0%
!! TTTATTACACAAATATCTTT+CGG - chr7_2:28119460-28119479 None:intergenic 15.0%
!! TTAATGATATCATATAAGAA+AGG - chr7_2:28119775-28119794 None:intergenic 15.0%
!! TGCTATCATTAATAATTATT+TGG + chr7_2:28120380-28120399 Msa1054990:intron 15.0%
!!! TATTTCATTTTATGCAATAT+TGG + chr7_2:28120921-28120940 Msa1054990:intron 15.0%
!! AATAAAAATCCAATATGTTT+GGG - chr7_2:28121544-28121563 None:intergenic 15.0%
!! AAATAAAAATCCAATATGTT+TGG - chr7_2:28121545-28121564 None:intergenic 15.0%
!! TAATATTTCTTATAAGAGAT+TGG + chr7_2:28121612-28121631 Msa1054990:intron 15.0%
!! TAATTATTCTAATGATAACA+AGG - chr7_2:28122127-28122146 None:intergenic 15.0%
!! AATATAAACATAAGCAATAA+AGG - chr7_2:28122300-28122319 None:intergenic 15.0%
!! TTATGTTTATATTTCAGATA+AGG + chr7_2:28122307-28122326 Msa1054990:intron 15.0%
!! TATGTTTATATTTCAGATAA+GGG + chr7_2:28122308-28122327 Msa1054990:intron 15.0%
!! AACACTAATTAACTTAAATA+AGG + chr7_2:28122719-28122738 Msa1054990:intron 15.0%
!! AAAATATCGTTCAATTTATT+TGG + chr7_2:28123997-28124016 Msa1054990:intron 15.0%
!! ATTGAATTACTTATTCAAAA+AGG + chr7_2:28124335-28124354 Msa1054990:CDS 15.0%
!! TGAAAATTAATAATCTGCTA+CGG + chr7_2:28117328-28117347 Msa1054990:intron 20.0%
!! AGTTTATAGAAATACATCAA+TGG - chr7_2:28117563-28117582 None:intergenic 20.0%
!! TCTATAAACTTATAAAGTGT+CGG + chr7_2:28117573-28117592 Msa1054990:intron 20.0%
!!! TAAAATAATTTTACATCGAC+GGG - chr7_2:28117668-28117687 None:intergenic 20.0%
!!! GTTATTTTGAATTGTAAAGT+TGG + chr7_2:28117720-28117739 Msa1054990:intron 20.0%
!! AATCAATTAAATGAATTACC+AGG - chr7_2:28117863-28117882 None:intergenic 20.0%
!!! AATTGATTTATCAATCATGT+TGG + chr7_2:28117875-28117894 Msa1054990:intron 20.0%
!!! ATTGATTTATCAATCATGTT+GGG + chr7_2:28117876-28117895 Msa1054990:intron 20.0%
!!! ATACATGCTATACTTTTAAA+GGG - chr7_2:28118090-28118109 None:intergenic 20.0%
!!! AATACATGCTATACTTTTAA+AGG - chr7_2:28118091-28118110 None:intergenic 20.0%
!! AATACTATTTGGTACAAATA+CGG - chr7_2:28118136-28118155 None:intergenic 20.0%
!! TTTATAAGAATAATATGACG+TGG - chr7_2:28118553-28118572 None:intergenic 20.0%
!! GATGAGAAATTTAAAAACAT+TGG + chr7_2:28119117-28119136 Msa1054990:intron 20.0%
!! ATGATGCATTTATGTAAAAT+AGG - chr7_2:28119402-28119421 None:intergenic 20.0%
!! ATTATTGTTGTAAGTAGAAT+TGG - chr7_2:28119928-28119947 None:intergenic 20.0%
!! AATAGGAAAAGGAAAAATAA+TGG - chr7_2:28120111-28120130 None:intergenic 20.0%
!!! ATTATTTTTCCTTTTCCTAT+TGG + chr7_2:28120110-28120129 Msa1054990:intron 20.0%
!! ACTGGGTAAAATTAAATATT+TGG + chr7_2:28120456-28120475 Msa1054990:intron 20.0%
!! AGATCTAAATAATATATCAG+TGG - chr7_2:28120688-28120707 None:intergenic 20.0%
!! TACTCAAAAATATTGTATGA+GGG - chr7_2:28121149-28121168 None:intergenic 20.0%
!! ATACTCAAAAATATTGTATG+AGG - chr7_2:28121150-28121169 None:intergenic 20.0%
!! GATTGAATAACATAAACATT+TGG - chr7_2:28121423-28121442 None:intergenic 20.0%
!! AAAATTGACAAATTATGTCA+AGG - chr7_2:28121460-28121479 None:intergenic 20.0%
!! AAATTTGCAACTATTCAAAA+TGG - chr7_2:28121494-28121513 None:intergenic 20.0%
!! AAAAACAGTCATAAGTTTAT+AGG + chr7_2:28121878-28121897 Msa1054990:intron 20.0%
!! ATGTTTATATTTCAGATAAG+GGG + chr7_2:28122309-28122328 Msa1054990:intron 20.0%
!!! AGTTGAACAATTTTTTTGAA+AGG + chr7_2:28122430-28122449 Msa1054990:intron 20.0%
!!! GTTGAACAATTTTTTTGAAA+GGG + chr7_2:28122431-28122450 Msa1054990:intron 20.0%
!! TTAAATAAGGTTCATATTAC+AGG + chr7_2:28122732-28122751 Msa1054990:intron 20.0%
!!! TAGTTGAATTGTTTCATTTT+TGG - chr7_2:28122883-28122902 None:intergenic 20.0%
!! AATGAAACAATTCAACTAAT+AGG + chr7_2:28122885-28122904 Msa1054990:intron 20.0%
!!! TCGTTGTTTTTATATTATAG+TGG + chr7_2:28123038-28123057 Msa1054990:intron 20.0%
!! AACATTAAAGAACTAATCTA+AGG + chr7_2:28123723-28123742 Msa1054990:intron 20.0%
!!! AACTAATCTAAGGATATTTT+TGG + chr7_2:28123733-28123752 Msa1054990:intron 20.0%
!! TGGAATAATAACATTAAATG+TGG + chr7_2:28123753-28123772 Msa1054990:intron 20.0%
!! TATTTGAGTCTAACAAATTT+AGG + chr7_2:28123799-28123818 Msa1054990:intron 20.0%
!! TTTAAATCATTCTCAACTTA+TGG + chr7_2:28124229-28124248 Msa1054990:intron 20.0%
!!! TTGATGCTTTTATGTTATAA+TGG + chr7_2:28124409-28124428 Msa1054990:intron 20.0%
!!! TATTTGGAAATTTTTTGCAT+AGG + chr7_2:28124866-28124885 Msa1054990:three_prime_UTR 20.0%
! CTCATTCTCATATATATCAT+TGG - chr7_2:28116967-28116986 None:intergenic 25.0%
! GATCGTTTAATTAATAGCTT+CGG - chr7_2:28117007-28117026 None:intergenic 25.0%
!! GTTTAATTTACATACACTGT+CGG + chr7_2:28117513-28117532 Msa1054990:intron 25.0%
!!! ACGATTTTAATGAAATGAGA+TGG + chr7_2:28117991-28118010 Msa1054990:intron 25.0%
!!! TTTTTTCCAGGAATACTATT+TGG - chr7_2:28118147-28118166 None:intergenic 25.0%
!!! TTTTTTCCAGGAATACTATT+TGG - chr7_2:28118147-28118166 None:intergenic 25.0%
!! GCATAAATGCTTTTGTAATT+TGG + chr7_2:28118375-28118394 Msa1054990:intron 25.0%
!! TGTTGGTGTAAACATATTTT+AGG + chr7_2:28118516-28118535 Msa1054990:intron 25.0%
!! CTGTTTAGAATTACTTCATT+GGG + chr7_2:28119152-28119171 Msa1054990:intron 25.0%
! AAATACTATGTACATGAGTA+TGG + chr7_2:28119300-28119319 Msa1054990:intron 25.0%
! AATACTATGTACATGAGTAT+GGG + chr7_2:28119301-28119320 Msa1054990:intron 25.0%
!! AAATTTGTGATAACGTATAG+AGG - chr7_2:28119360-28119379 None:intergenic 25.0%
!!! TATAAAGCCCTGTTTTAAAT+AGG - chr7_2:28119596-28119615 None:intergenic 25.0%
! ATGATATCATATAAGAAAGG+TGG - chr7_2:28119772-28119791 None:intergenic 25.0%
!! TAACTGAATTTTCTAACTGT+AGG + chr7_2:28120659-28120678 Msa1054990:intron 25.0%
! AAGAATTTACCACAAAATGA+CGG - chr7_2:28120846-28120865 None:intergenic 25.0%
! TCTCCGTTTAATAGTATATT+TGG + chr7_2:28120964-28120983 Msa1054990:intron 25.0%
! CGACCAAATATACTATTAAA+CGG - chr7_2:28120970-28120989 None:intergenic 25.0%
! ATGGTTACTAATTAAATTGC+CGG - chr7_2:28121093-28121112 None:intergenic 25.0%
! TATTACGATTTATGACAAAG+AGG + chr7_2:28121588-28121607 Msa1054990:intron 25.0%
! ATTACGATTTATGACAAAGA+GGG + chr7_2:28121589-28121608 Msa1054990:intron 25.0%
!!! TAAGAGATTGGTTGATTTTT+TGG + chr7_2:28121624-28121643 Msa1054990:intron 25.0%
! TGCTCTTGGAAAATAAAATT+TGG + chr7_2:28122037-28122056 Msa1054990:intron 25.0%
! AAAACATGTTTCAACTTTCA+AGG + chr7_2:28122095-28122114 Msa1054990:intron 25.0%
!! AATATCCTTTCTAGAAAGAA+AGG + chr7_2:28122184-28122203 Msa1054990:intron 25.0%
! TGTTTATATTTCAGATAAGG+GGG + chr7_2:28122310-28122329 Msa1054990:intron 25.0%
! TGAACATAAAGGTTAAAGAA+CGG - chr7_2:28122595-28122614 None:intergenic 25.0%
! AGACAATATGATGAACATAA+AGG - chr7_2:28122606-28122625 None:intergenic 25.0%
! TAAGGATTCAATATTCTAGA+TGG - chr7_2:28122958-28122977 None:intergenic 25.0%
! ATAGAATATGGAAGTGAATA+AGG - chr7_2:28122988-28123007 None:intergenic 25.0%
!!! TGTTGTAAAGGCATTAAAAT+TGG + chr7_2:28123089-28123108 Msa1054990:CDS 25.0%
!! CTATGGTAGTTTGTATTTAA+CGG + chr7_2:28123211-28123230 Msa1054990:intron 25.0%
!!! TTACTTTGTCACATTTTGAT+AGG + chr7_2:28123386-28123405 Msa1054990:intron 25.0%
!! ACCTATTTTCACACTTATTA+AGG + chr7_2:28123488-28123507 Msa1054990:intron 25.0%
! TCCTTAATAAGTGTGAAAAT+AGG - chr7_2:28123492-28123511 None:intergenic 25.0%
!! ATTTTCACACTTATTAAGGA+TGG + chr7_2:28123492-28123511 Msa1054990:intron 25.0%
!! ATTAGTTCTTTAATGTTGTG+AGG - chr7_2:28123720-28123739 None:intergenic 25.0%
! AACATTAAATGTGGATAGAA+TGG + chr7_2:28123762-28123781 Msa1054990:intron 25.0%
!! TAGTAGTTGTTTGTTACAAA+AGG + chr7_2:28123883-28123902 Msa1054990:intron 25.0%
!! AGTAGTTGTTTGTTACAAAA+GGG + chr7_2:28123884-28123903 Msa1054990:intron 25.0%
! AATGCTATATTCTAGTCATT+GGG + chr7_2:28123954-28123973 Msa1054990:intron 25.0%
!! TAATTAAAAGTGCAAGTTAG+TGG - chr7_2:28124080-28124099 None:intergenic 25.0%
! GAATAAGTAATTCAATTGCT+TGG - chr7_2:28124331-28124350 None:intergenic 25.0%
! AAGCAGATTAGAATAATATG+TGG + chr7_2:28124730-28124749 Msa1054990:three_prime_UTR 25.0%
! TTATCGAATGTATATGATGA+TGG + chr7_2:28124802-28124821 Msa1054990:three_prime_UTR 25.0%
! ATAATTGTCTACATTAGTAG+AGG - chr7_2:28124831-28124850 None:intergenic 25.0%
! GACAATTATATATAGTTCAG+CGG + chr7_2:28124842-28124861 Msa1054990:three_prime_UTR 25.0%
! TGATAGAGAGAGAAGATTTT+GGG - chr7_2:28117210-28117229 None:intergenic 30.0%
! TTGATAGAGAGAGAAGATTT+TGG - chr7_2:28117211-28117230 None:intergenic 30.0%
TTGATTGAGAAGAGAATCTT+TGG - chr7_2:28117245-28117264 None:intergenic 30.0%
AATGATCATATCACAAACAG+TGG - chr7_2:28117395-28117414 None:intergenic 30.0%
TATTAGTGTATTTCGTGATG+AGG + chr7_2:28118111-28118130 Msa1054990:intron 30.0%
TTTGTACCAAATAGTATTCC+TGG + chr7_2:28118138-28118157 Msa1054990:intron 30.0%
! GTGTCTTTTATTAGTCAGTT+TGG + chr7_2:28118178-28118197 Msa1054990:intron 30.0%
TTTGTACCAAATAGTATTCC+TGG + chr7_2:28118138-28118157 Msa1054990:intron 30.0%
! GTGTCTTTTATTAGTCAGTT+TGG + chr7_2:28118178-28118197 Msa1054990:intron 30.0%
ACTAACGAAAAACACATATG+AGG - chr7_2:28118321-28118340 None:intergenic 30.0%
! TCTTTTGTTAGTAATTCCAC+AGG - chr7_2:28118352-28118371 None:intergenic 30.0%
GCATAAAGTTCATACATTGT+TGG + chr7_2:28118499-28118518 Msa1054990:intron 30.0%
!!! AACGTATATTAGTTTTCCAC+CGG - chr7_2:28118630-28118649 None:intergenic 30.0%
AAAGAAGGAACTTCATTCAA+GGG - chr7_2:28118659-28118678 None:intergenic 30.0%
CTACAACAAACAAACAAAGA+AGG - chr7_2:28118674-28118693 None:intergenic 30.0%
!!! AAATGGGAATTTTGACTCTT+TGG - chr7_2:28118749-28118768 None:intergenic 30.0%
AATAATAGACGACCAAAAAG+TGG - chr7_2:28118861-28118880 None:intergenic 30.0%
!! AAAGAAGAAGCATCTTTAGA+TGG + chr7_2:28118914-28118933 Msa1054990:intron 30.0%
! TCAATGTGGAAAACGATTTT+TGG - chr7_2:28119090-28119109 None:intergenic 30.0%
! AATCGTTTTCCACATTGAAA+AGG + chr7_2:28119092-28119111 Msa1054990:intron 30.0%
CCAATGAAGTAATTCTAAAC+AGG - chr7_2:28119154-28119173 None:intergenic 30.0%
! CCTGTTTAGAATTACTTCAT+TGG + chr7_2:28119151-28119170 Msa1054990:intron 30.0%
TATAGGACAGAGATTTCAAT+AGG - chr7_2:28119220-28119239 None:intergenic 30.0%
ATTGAAATCTCTGTCCTATA+TGG + chr7_2:28119220-28119239 Msa1054990:intron 30.0%
TTGAAATCTCTGTCCTATAT+GGG + chr7_2:28119221-28119240 Msa1054990:intron 30.0%
ATACTATGTACATGAGTATG+GGG + chr7_2:28119302-28119321 Msa1054990:intron 30.0%
TATTTGCCAAGATATGTTGA+CGG + chr7_2:28119421-28119440 Msa1054990:intron 30.0%
GTAAAATTGGACTTCAGTTA+GGG - chr7_2:28119549-28119568 None:intergenic 30.0%
TGTAAAATTGGACTTCAGTT+AGG - chr7_2:28119550-28119569 None:intergenic 30.0%
! ACAGTAGTCCTATTTAAAAC+AGG + chr7_2:28119585-28119604 Msa1054990:intron 30.0%
! CAGTAGTCCTATTTAAAACA+GGG + chr7_2:28119586-28119605 Msa1054990:intron 30.0%
GAACATGATCTATTTGATGA+CGG - chr7_2:28119722-28119741 None:intergenic 30.0%
! CACTGATACTTTAGCAATTT+TGG + chr7_2:28120064-28120083 Msa1054990:intron 30.0%
!!! TTTAGCAATTTTGGAGTAGA+TGG + chr7_2:28120073-28120092 Msa1054990:intron 30.0%
! TTTTTCCTTTTCCTATTGGA+AGG + chr7_2:28120114-28120133 Msa1054990:intron 30.0%
AAAAACCTTCCAATAGGAAA+AGG - chr7_2:28120122-28120141 None:intergenic 30.0%
TCTGATGTCATTATATTGGA+GGG + chr7_2:28120196-28120215 Msa1054990:CDS 30.0%
! ATGAAGATTTTTGTTGACAC+AGG + chr7_2:28120262-28120281 Msa1054990:CDS 30.0%
ATCAGAAGAATTGAATGAGT+AGG + chr7_2:28120610-28120629 Msa1054990:intron 30.0%
TCAGAAGAATTGAATGAGTA+GGG + chr7_2:28120611-28120630 Msa1054990:intron 30.0%
AGAATTTACCACAAAATGAC+GGG - chr7_2:28120845-28120864 None:intergenic 30.0%
TGGTAAATTCTTTGATTAGC+TGG + chr7_2:28120854-28120873 Msa1054990:intron 30.0%
! TAAATTCTTTGATTAGCTGG+TGG + chr7_2:28120857-28120876 Msa1054990:intron 30.0%
TAATAGCAACTTCTTGTGAA+GGG - chr7_2:28120898-28120917 None:intergenic 30.0%
ATAATAGCAACTTCTTGTGA+AGG - chr7_2:28120899-28120918 None:intergenic 30.0%
ATATACTATTAAACGGAGAG+AGG - chr7_2:28120963-28120982 None:intergenic 30.0%
CATAAACTCTGTTCTTGAAA+TGG + chr7_2:28121062-28121081 Msa1054990:CDS 30.0%
GGCAATTTAATTAGTAACCA+TGG + chr7_2:28121092-28121111 Msa1054990:intron 30.0%
ACATCAGCATATTTCTTTGA+TGG - chr7_2:28121303-28121322 None:intergenic 30.0%
TGTTATTCAATCTACATTCC+AGG + chr7_2:28121431-28121450 Msa1054990:CDS 30.0%
!!! ATTGGTTGATTTTTTGGCTT+AGG + chr7_2:28121630-28121649 Msa1054990:intron 30.0%
!!! TTCTCTTAGCTTTTAGCTTA+TGG + chr7_2:28121813-28121832 Msa1054990:intron 30.0%
!!! TCTCTTAGCTTTTAGCTTAT+GGG + chr7_2:28121814-28121833 Msa1054990:intron 30.0%
!!! TATTTTCCAAGAGCACTTTA+AGG - chr7_2:28122032-28122051 None:intergenic 30.0%
! AAGTTCCTTTCTTTCTAGAA+AGG - chr7_2:28122192-28122211 None:intergenic 30.0%
! TTTCTAGAAAGAAAGGAACT+TGG + chr7_2:28122191-28122210 Msa1054990:intron 30.0%
! TTCTAGAAAGAAAGGAACTT+GGG + chr7_2:28122192-28122211 Msa1054990:intron 30.0%
ATTGTTCAACTGAACTATGA+AGG - chr7_2:28122421-28122440 None:intergenic 30.0%
GATTTCTGCAAGAAATTATG+TGG + chr7_2:28122774-28122793 Msa1054990:CDS 30.0%
GTGGTGTTTCAATTATTAGA+AGG + chr7_2:28122793-28122812 Msa1054990:CDS 30.0%
GACATACGAAAATAAATACC+TGG - chr7_2:28122835-28122854 None:intergenic 30.0%
! AGTGAATAAGGTTTGGTTTA+AGG - chr7_2:28122976-28122995 None:intergenic 30.0%
ATATGGAAGTGAATAAGGTT+TGG - chr7_2:28122983-28123002 None:intergenic 30.0%
ACGAAAAAAATTCAGCCAAT+TGG - chr7_2:28123022-28123041 None:intergenic 30.0%
TTGGAAAAATTCTGATTCAC+CGG + chr7_2:28123108-28123127 Msa1054990:CDS 30.0%
CGTTAAATACAAACTACCAT+AGG - chr7_2:28123213-28123232 None:intergenic 30.0%
TACAGTGAAACAATAAACAG+TGG - chr7_2:28123364-28123383 None:intergenic 30.0%
! GAAAATAGGTTTATTTCTCG+TGG - chr7_2:28123478-28123497 None:intergenic 30.0%
CATGATGTGTAGTCAAATAT+CGG + chr7_2:28123544-28123563 Msa1054990:intron 30.0%
TTGAATGATATTTGTGAACG+TGG + chr7_2:28123931-28123950 Msa1054990:intron 30.0%
GAATGCTATATTCTAGTCAT+TGG + chr7_2:28123953-28123972 Msa1054990:intron 30.0%
! CAAGTAGTTAGATTAGTCAT+TGG + chr7_2:28124128-28124147 Msa1054990:intron 30.0%
GATATTTCACACTAGTAACA+TGG + chr7_2:28124163-28124182 Msa1054990:intron 30.0%
! ATAGTCTATTAGTTCTCTGA+TGG + chr7_2:28124202-28124221 Msa1054990:intron 30.0%
AATATCAATAATTCTGCTGC+AGG + chr7_2:28124293-28124312 Msa1054990:intron 30.0%
AAGTAATTCAATTGCTTGGT+TGG - chr7_2:28124327-28124346 None:intergenic 30.0%
GAGATTCAGGAATATAATGT+GGG - chr7_2:28124372-28124391 None:intergenic 30.0%
TGAGATTCAGGAATATAATG+TGG - chr7_2:28124373-28124392 None:intergenic 30.0%
GAATCCATTGTGTTTGTAAA+AGG + chr7_2:28124491-28124510 Msa1054990:CDS 30.0%
! GAAACCTTTTACAAACACAA+TGG - chr7_2:28124498-28124517 None:intergenic 30.0%
ATATTTAGCAAATACCACCT+TGG + chr7_2:28124693-28124712 Msa1054990:three_prime_UTR 30.0%
TATATAGTTCAGCGGTTATT+TGG + chr7_2:28124850-28124869 Msa1054990:three_prime_UTR 30.0%
!! ATCGTTTGTGTTGTTTGTCT+CGG - chr7_2:28117091-28117110 None:intergenic 35.0%
! GATAGAGAGAGAAGATTTTG+GGG - chr7_2:28117209-28117228 None:intergenic 35.0%
TGAGAAGAGAATCTTTGGTT+AGG - chr7_2:28117240-28117259 None:intergenic 35.0%
GAGAAGAGACGAATAACAAA+GGG - chr7_2:28117268-28117287 None:intergenic 35.0%
AGAGAAGAGACGAATAACAA+AGG - chr7_2:28117269-28117288 None:intergenic 35.0%
TTAATAATCTGCTACGGTGA+TGG + chr7_2:28117334-28117353 Msa1054990:intron 35.0%
!! GAGTACAATTTTGATCATCC+TGG + chr7_2:28117842-28117861 Msa1054990:CDS 35.0%
ATGAGATGGCCATATTTGAT+TGG + chr7_2:28118005-28118024 Msa1054990:intron 35.0%
GCTAAGCAACCAATCAAATA+TGG - chr7_2:28118017-28118036 None:intergenic 35.0%
!!! CATTCTAGTGTGTTTTTTCC+AGG - chr7_2:28118159-28118178 None:intergenic 35.0%
!!! CATTCTAGTGTGTTTTTTCC+AGG - chr7_2:28118159-28118178 None:intergenic 35.0%
ATGAGGACCAAACTAATCAA+CGG - chr7_2:28118304-28118323 None:intergenic 35.0%
! TCGTTAGTCAATTTTTCCTG+TGG + chr7_2:28118333-28118352 Msa1054990:intron 35.0%
TGACATCATCTCACACAATT+AGG + chr7_2:28118417-28118436 Msa1054990:intron 35.0%
GACATCATCTCACACAATTA+GGG + chr7_2:28118418-28118437 Msa1054990:intron 35.0%
!! TACTCTAGAGTTGAAAGTGT+TGG + chr7_2:28118456-28118475 Msa1054990:intron 35.0%
!! ACTCTAGAGTTGAAAGTGTT+GGG + chr7_2:28118457-28118476 Msa1054990:intron 35.0%
!!! GCGAAGTGGTGATTTTTTAT+TGG + chr7_2:28118601-28118620 Msa1054990:intron 35.0%
!!! GGTGATTTTTTATTGGATGC+CGG + chr7_2:28118608-28118627 Msa1054990:intron 35.0%
CAAAGAAGGAACTTCATTCA+AGG - chr7_2:28118660-28118679 None:intergenic 35.0%
TGCTTCTTGAAGTCGTAAAT+GGG - chr7_2:28118765-28118784 None:intergenic 35.0%
AGCATCTTTAGATGGTAAGA+CGG + chr7_2:28118922-28118941 Msa1054990:intron 35.0%
!!! AGAGTTTTAAATTGATGCCG+TGG + chr7_2:28118949-28118968 Msa1054990:intron 35.0%
TCACGTCATGATACTTGATA+TGG + chr7_2:28118978-28118997 Msa1054990:intron 35.0%
!!! AAAACGATTTTTGGTGTCCA+TGG - chr7_2:28119081-28119100 None:intergenic 35.0%
! TCTCATCATCCTTTTCAATG+TGG - chr7_2:28119104-28119123 None:intergenic 35.0%
ATGCATTTCATTGCCCATAT+AGG - chr7_2:28119237-28119256 None:intergenic 35.0%
TAGTTTCTGTCTATGAGTCT+TGG + chr7_2:28119261-28119280 Msa1054990:intron 35.0%
TGAGTCTTGGATACTTGATA+TGG + chr7_2:28119274-28119293 Msa1054990:intron 35.0%
ACGTATAGAGGTTTGTATCT+TGG - chr7_2:28119348-28119367 None:intergenic 35.0%
TTATCACCGTCAACATATCT+TGG - chr7_2:28119430-28119449 None:intergenic 35.0%
AAATTGATGGGGTTATCTCT+TGG - chr7_2:28119683-28119702 None:intergenic 35.0%
ACCCCATCAATTTAAGAAGT+CGG + chr7_2:28119690-28119709 Msa1054990:intron 35.0%
! ACCGACTTCTTAAATTGATG+GGG - chr7_2:28119694-28119713 None:intergenic 35.0%
! GACCGACTTCTTAAATTGAT+GGG - chr7_2:28119695-28119714 None:intergenic 35.0%
! TGACCGACTTCTTAAATTGA+TGG - chr7_2:28119696-28119715 None:intergenic 35.0%
TCATATAAGAAAGGTGGACA+TGG - chr7_2:28119766-28119785 None:intergenic 35.0%
TTGTGATATTTCCTGAACAC+TGG + chr7_2:28119813-28119832 Msa1054990:intron 35.0%
GTACATACTCCTTTATTCAC+CGG - chr7_2:28119904-28119923 None:intergenic 35.0%
TGTTCCTTAAGTGTCAGAAA+TGG + chr7_2:28119984-28120003 Msa1054990:intron 35.0%
GATACCATTTCTGACACTTA+AGG - chr7_2:28119991-28120010 None:intergenic 35.0%
! TTCCTATTGGAAGGTTTTTC+TGG + chr7_2:28120123-28120142 Msa1054990:intron 35.0%
AACCAGAAAAACCTTCCAAT+AGG - chr7_2:28120128-28120147 None:intergenic 35.0%
!!! AAGGTTTTTCTGGTTCTTTC+TGG + chr7_2:28120133-28120152 Msa1054990:intron 35.0%
TGCCTCTGATGTCATTATAT+TGG + chr7_2:28120192-28120211 Msa1054990:CDS 35.0%
CTCCAATATAATGACATCAG+AGG - chr7_2:28120197-28120216 None:intergenic 35.0%
CTCTGATGTCATTATATTGG+AGG + chr7_2:28120195-28120214 Msa1054990:CDS 35.0%
TCTTCATGTTCATCAGATCA+CGG - chr7_2:28120249-28120268 None:intergenic 35.0%
ACACAAATGCAACACAAAGT+GGG - chr7_2:28120432-28120451 None:intergenic 35.0%
TACACAAATGCAACACAAAG+TGG - chr7_2:28120433-28120452 None:intergenic 35.0%
TGTTGCATTTGTGTAAGTAC+TGG + chr7_2:28120438-28120457 Msa1054990:intron 35.0%
GTTGCATTTGTGTAAGTACT+GGG + chr7_2:28120439-28120458 Msa1054990:intron 35.0%
TTACCAGTGAGAATGTACAA+AGG - chr7_2:28120717-28120736 None:intergenic 35.0%
ACTGCAACTTACCTGATATA+TGG + chr7_2:28120750-28120769 Msa1054990:intron 35.0%
ATGGTCAGTGACATGATATA+AGG + chr7_2:28120769-28120788 Msa1054990:intron 35.0%
TGGTCAGTGACATGATATAA+GGG + chr7_2:28120770-28120789 Msa1054990:intron 35.0%
GTGATAAGAAGGCGAATATA+GGG - chr7_2:28120823-28120842 None:intergenic 35.0%
AATAGCAACTTCTTGTGAAG+GGG - chr7_2:28120897-28120916 None:intergenic 35.0%
TGTTCTTGAAATGGTAAGTC+CGG + chr7_2:28121071-28121090 Msa1054990:intron 35.0%
TTCCTAACTGCATGTAATGT+TGG + chr7_2:28121226-28121245 Msa1054990:intron 35.0%
AGAACAAAGTCATCAAAAGC+AGG - chr7_2:28121279-28121298 None:intergenic 35.0%
GTGTTGTGTAATCAAATCGA+TGG - chr7_2:28121358-28121377 None:intergenic 35.0%
CAAATTATGTCAAGGATACC+TGG - chr7_2:28121452-28121471 None:intergenic 35.0%
!!! TTTTGGCTTAGGTTAGCTTT+TGG + chr7_2:28121641-28121660 Msa1054990:intron 35.0%
TGGAAGAAAAAAAAGCCGAT+TGG + chr7_2:28121731-28121750 Msa1054990:intron 35.0%
AGTTACGATCCGATAAATTG+AGG + chr7_2:28121755-28121774 Msa1054990:intron 35.0%
GTTACGATCCGATAAATTGA+GGG + chr7_2:28121756-28121775 Msa1054990:intron 35.0%
TTACGATCCGATAAATTGAG+GGG + chr7_2:28121757-28121776 Msa1054990:intron 35.0%
TCAAAAGCCCCTCAATTTAT+CGG - chr7_2:28121767-28121786 None:intergenic 35.0%
AGCTAAGAGAATTGCTCTAT+GGG - chr7_2:28121804-28121823 None:intergenic 35.0%
AAGCTAAGAGAATTGCTCTA+TGG - chr7_2:28121805-28121824 None:intergenic 35.0%
!! TCTTTTCCTTAAAGTGCTCT+TGG + chr7_2:28122023-28122042 Msa1054990:intron 35.0%
TTCTAATGATAACAAGGCCA+TGG - chr7_2:28122121-28122140 None:intergenic 35.0%
ATCCATAAGCTACATTATCG+AGG + chr7_2:28122157-28122176 Msa1054990:intron 35.0%
TCCATAAGCTACATTATCGA+GGG + chr7_2:28122158-28122177 Msa1054990:intron 35.0%
AACTTGGGTTTATTGTGCAT+TGG + chr7_2:28122207-28122226 Msa1054990:intron 35.0%
TAACTACCTTTGCTGATCTT+CGG + chr7_2:28122472-28122491 Msa1054990:intron 35.0%
!! ACAACTTGCTTTTCTGTGAA+AGG - chr7_2:28122531-28122550 None:intergenic 35.0%
TCATATTGTCTTCTCTTGTG+CGG + chr7_2:28122615-28122634 Msa1054990:intron 35.0%
AATATTTGTGCTTTGTGCAC+AGG + chr7_2:28122643-28122662 Msa1054990:intron 35.0%
ATTACAGGATCTGTCTATAC+TGG + chr7_2:28122747-28122766 Msa1054990:CDS 35.0%
AAGAAACCTATCATTTGGAC+TGG - chr7_2:28122857-28122876 None:intergenic 35.0%
GGTAGAAGAAACCTATCATT+TGG - chr7_2:28122862-28122881 None:intergenic 35.0%
AGAAACTGTGATCGTAACAA+AGG - chr7_2:28122918-28122937 None:intergenic 35.0%
GAAACAGCTACGATAGAATA+TGG - chr7_2:28123000-28123019 None:intergenic 35.0%
ATATTATAGTGGTGAGAGCA+TGG + chr7_2:28123049-28123068 Msa1054990:intron 35.0%
TGGAAAAATTCTGATTCACC+GGG + chr7_2:28123109-28123128 Msa1054990:CDS 35.0%
TATATATGAGAAGCTTCCCA+AGG + chr7_2:28123260-28123279 Msa1054990:CDS 35.0%
GTGAAACAATAAACAGTGGA+AGG - chr7_2:28123360-28123379 None:intergenic 35.0%
GATATGGAAGCTTAAAATGG+AGG + chr7_2:28123609-28123628 Msa1054990:intron 35.0%
TAACCTCCCCCTAATTATAA+TGG + chr7_2:28123688-28123707 Msa1054990:intron 35.0%
AGTTCTTTAATGTTGTGAGG+AGG - chr7_2:28123717-28123736 None:intergenic 35.0%
! AACTACTAACTATTTCTCCC+AGG - chr7_2:28123871-28123890 None:intergenic 35.0%
! GATTAGTCATTGGCAAAAGT+CGG + chr7_2:28124138-28124157 Msa1054990:intron 35.0%
AGGAATATAATGTGGGATTC+TGG - chr7_2:28124365-28124384 None:intergenic 35.0%
TACTCACAGAAATGAGATTC+AGG - chr7_2:28124385-28124404 None:intergenic 35.0%
GTGTGAATCTTTATGTTTCC+AGG + chr7_2:28124459-28124478 Msa1054990:intron 35.0%
GATGTCACAATCTTCAATGA+TGG - chr7_2:28124520-28124539 None:intergenic 35.0%
CATGTTGAAGGATCAATCAT+CGG - chr7_2:28124620-28124639 None:intergenic 35.0%
! TGATCCTTCAACATGTCTTT+TGG + chr7_2:28124625-28124644 Msa1054990:exon 35.0%
ACAAACAACACAAACGATGC+CGG + chr7_2:28117093-28117112 Msa1054990:exon 40.0%
!! ATTTTGGGGAAGATGAGAGT+CGG - chr7_2:28117195-28117214 None:intergenic 40.0%
TGCAATGTACCTGATTGACA+AGG - chr7_2:28117444-28117463 None:intergenic 40.0%
! GTGTAGGATTCGTTTTATCG+CGG + chr7_2:28117788-28117807 Msa1054990:intron 40.0%
! TGTAGGATTCGTTTTATCGC+GGG + chr7_2:28117789-28117808 Msa1054990:intron 40.0%
AATTGAGCGGATATCATGGA+AGG - chr7_2:28118047-28118066 None:intergenic 40.0%
GTGTGTAATTCGGAATTGAG+CGG - chr7_2:28118060-28118079 None:intergenic 40.0%
AATACGGAAGACACATACGA+AGG - chr7_2:28118204-28118223 None:intergenic 40.0%
! GTGTCTTCCGTTGATTAGTT+TGG + chr7_2:28118294-28118313 Msa1054990:intron 40.0%
GATTGTATGAAGTAGCGAAG+TGG + chr7_2:28118587-28118606 Msa1054990:intron 40.0%
!!! GATTTTTTATTGGATGCCGG+TGG + chr7_2:28118611-28118630 Msa1054990:intron 40.0%
TGTTGTAGATGCTTTCGACA+CGG + chr7_2:28118686-28118705 Msa1054990:intron 40.0%
TGTATGAAGAAGCTCATCAG+TGG + chr7_2:28118723-28118742 Msa1054990:CDS 40.0%
GTGCTTCTTGAAGTCGTAAA+TGG - chr7_2:28118766-28118785 None:intergenic 40.0%
! GAAAACTATCAGAAGAGCGT+TGG - chr7_2:28118788-28118807 None:intergenic 40.0%
! CTCTTCTGATAGTTTTCGTC+AGG + chr7_2:28118791-28118810 Msa1054990:CDS 40.0%
!!! CTACTGACATTGCCACTTTT+TGG + chr7_2:28118846-28118865 Msa1054990:intron 40.0%
GCATCTTTAGATGGTAAGAC+GGG + chr7_2:28118923-28118942 Msa1054990:intron 40.0%
TCATGACGTGAATGTTACCA+CGG - chr7_2:28118969-28118988 None:intergenic 40.0%
CGTCATGATACTTGATATGG+TGG + chr7_2:28118981-28119000 Msa1054990:intron 40.0%
TCTCATTAGCAGTGTCATGT+TGG + chr7_2:28119029-28119048 Msa1054990:intron 40.0%
!!! AGTGTCATGTTGGTTTTCCA+TGG + chr7_2:28119039-28119058 Msa1054990:intron 40.0%
!!! ATGTTGGTTTTCCATGGACA+AGG + chr7_2:28119045-28119064 Msa1054990:intron 40.0%
AGCTGTTTAGTCTCACACAT+TGG + chr7_2:28119177-28119196 Msa1054990:intron 40.0%
TGACATGACACATCATTGGA+GGG - chr7_2:28120317-28120336 None:intergenic 40.0%
ATGACATGACACATCATTGG+AGG - chr7_2:28120318-28120337 None:intergenic 40.0%
CACATGACATGACACATCAT+TGG - chr7_2:28120321-28120340 None:intergenic 40.0%
! GCTGTGCATTTACTGTTTCT+AGG - chr7_2:28120525-28120544 None:intergenic 40.0%
TTGCTGTAGAACTGAAGTCA+TGG + chr7_2:28120548-28120567 Msa1054990:intron 40.0%
CTACCTTTGTACATTCTCAC+TGG + chr7_2:28120711-28120730 Msa1054990:intron 40.0%
CATGTCACTGACCATATATC+AGG - chr7_2:28120764-28120783 None:intergenic 40.0%
GGTGATAAGAAGGCGAATAT+AGG - chr7_2:28120824-28120843 None:intergenic 40.0%
!! CAAAATGACGGGTGATAAGA+AGG - chr7_2:28120834-28120853 None:intergenic 40.0%
!! TCTTATCACCCGTCATTTTG+TGG + chr7_2:28120834-28120853 Msa1054990:intron 40.0%
CTATTAAACGGAGAGAGGAA+GGG - chr7_2:28120958-28120977 None:intergenic 40.0%
ACTATTAAACGGAGAGAGGA+AGG - chr7_2:28120959-28120978 None:intergenic 40.0%
TAGAATTAGACGTGACACAG+TGG + chr7_2:28121026-28121045 Msa1054990:CDS 40.0%
!! ACCATGGTTTTGCAACAGTT+AGG + chr7_2:28121108-28121127 Msa1054990:intron 40.0%
TCCTAACTGTTGCAAAACCA+TGG - chr7_2:28121112-28121131 None:intergenic 40.0%
GCGATTGATCACATCTCATA+AGG - chr7_2:28121194-28121213 None:intergenic 40.0%
AGCCAACATTACATGCAGTT+AGG - chr7_2:28121231-28121250 None:intergenic 40.0%
TAGATCATGTTGACCAAGCT+TGG - chr7_2:28121388-28121407 None:intergenic 40.0%
TGCTACTCACCCAAACATAT+TGG + chr7_2:28121532-28121551 Msa1054990:intron 40.0%
ATTCGATTGTAACCTCCGAT+CGG - chr7_2:28121712-28121731 None:intergenic 40.0%
ATCGGATCGTAACTTCCAAT+CGG - chr7_2:28121749-28121768 None:intergenic 40.0%
TGTTTCAACTTTCAAGGCCA+TGG + chr7_2:28122101-28122120 Msa1054990:intron 40.0%
ACCCTCGATAATGTAGCTTA+TGG - chr7_2:28122162-28122181 None:intergenic 40.0%
ATAAGCTACATTATCGAGGG+TGG + chr7_2:28122161-28122180 Msa1054990:intron 40.0%
TCTTGCAACTCTAAGTTCAC+TGG + chr7_2:28122234-28122253 Msa1054990:intron 40.0%
CAATCATCTCTCCTTGTACT+CGG + chr7_2:28122563-28122582 Msa1054990:CDS 40.0%
CATATTGTCTTCTCTTGTGC+GGG + chr7_2:28122616-28122635 Msa1054990:intron 40.0%
ATATTGTCTTCTCTTGTGCG+GGG + chr7_2:28122617-28122636 Msa1054990:intron 40.0%
TTTGTGCACAGGAACATGTA+TGG + chr7_2:28122654-28122673 Msa1054990:intron 40.0%
TATGGCTAAGAAGCAACAGT+AGG + chr7_2:28122672-28122691 Msa1054990:intron 40.0%
GTATGTCCAGTCCAAATGAT+AGG + chr7_2:28122848-28122867 Msa1054990:intron 40.0%
TGTGATCGTAACAAAGGAAC+TGG - chr7_2:28122912-28122931 None:intergenic 40.0%
! CTATCGTAGCTGTTTCCAAT+TGG + chr7_2:28123004-28123023 Msa1054990:intron 40.0%
AAAATTCTGATTCACCGGGA+TGG + chr7_2:28123113-28123132 Msa1054990:CDS 40.0%
! GTTTTCCATTATCTCCATCC+CGG - chr7_2:28123130-28123149 None:intergenic 40.0%
!! GGATGGAGATAATGGAAAAC+AGG + chr7_2:28123130-28123149 Msa1054990:CDS 40.0%
CAATTCATGAGGACTACTCT+AGG - chr7_2:28123186-28123205 None:intergenic 40.0%
CTAGAGTAGTCCTCATGAAT+TGG + chr7_2:28123184-28123203 Msa1054990:intron 40.0%
CCATAGGAAACCAATTCATG+AGG - chr7_2:28123197-28123216 None:intergenic 40.0%
! CCTCATGAATTGGTTTCCTA+TGG + chr7_2:28123194-28123213 Msa1054990:intron 40.0%
GCGGATATGGAAGCTTAAAA+TGG + chr7_2:28123606-28123625 Msa1054990:intron 40.0%
!!! GGATTTTTTGCTTTCTGCCA+TGG + chr7_2:28123630-28123649 Msa1054990:intron 40.0%
CATGAAATCAAGTGCTACCA+TGG - chr7_2:28123650-28123669 None:intergenic 40.0%
AGGTGGCCATTATAATTAGG+GGG - chr7_2:28123697-28123716 None:intergenic 40.0%
GAGGTGGCCATTATAATTAG+GGG - chr7_2:28123698-28123717 None:intergenic 40.0%
GGAGGTGGCCATTATAATTA+GGG - chr7_2:28123699-28123718 None:intergenic 40.0%
AGGAGGTGGCCATTATAATT+AGG - chr7_2:28123700-28123719 None:intergenic 40.0%
TCTTTAATGTTGTGAGGAGG+TGG - chr7_2:28123714-28123733 None:intergenic 40.0%
ATGAGTTTCGTGTTATCCCT+GGG + chr7_2:28124563-28124582 Msa1054990:CDS 40.0%
! GAATTTGGTGATCGGTACTT+TGG + chr7_2:28124592-28124611 Msa1054990:CDS 40.0%
! TCCTTCAACATGTCTTTTGG+TGG + chr7_2:28124628-28124647 Msa1054990:three_prime_UTR 40.0%
TCCACCAAAAGACATGTTGA+AGG - chr7_2:28124632-28124651 None:intergenic 40.0%
!! CTTTTGGTGGATGCATCTTT+TGG + chr7_2:28124641-28124660 Msa1054990:three_prime_UTR 40.0%
GTGGATGCAAACTCATTCTT+TGG + chr7_2:28124749-28124768 Msa1054990:three_prime_UTR 40.0%
TTTGTCTCGGTCACTCAGTA+TGG - chr7_2:28117078-28117097 None:intergenic 45.0%
! TCGATCGAACTTGTTTCGTC+CGG - chr7_2:28117115-28117134 None:intergenic 45.0%
TCGTGTTGTCCTTGTCAATC+AGG + chr7_2:28117432-28117451 Msa1054990:CDS 45.0%
TGAACATGCTCCAACTCTTC+TGG - chr7_2:28117821-28117840 None:intergenic 45.0%
TCGGAATTGAGCGGATATCA+TGG - chr7_2:28118051-28118070 None:intergenic 45.0%
GGGTGAAGCAGTGTGTAATT+CGG - chr7_2:28118070-28118089 None:intergenic 45.0%
TCAACGGAAGACACATACGA+AGG - chr7_2:28118288-28118307 None:intergenic 45.0%
AGGAACTTCATTCAAGGGAC+TGG - chr7_2:28118654-28118673 None:intergenic 45.0%
! TTTTCGTCAGGTATGCAGTG+TGG + chr7_2:28118803-28118822 Msa1054990:intron 45.0%
! CTTGATATGGTGGAGAATCG+CGG + chr7_2:28118991-28119010 Msa1054990:intron 45.0%
! TTGGTGTCCATGGTGAAGTT+TGG - chr7_2:28119071-28119090 None:intergenic 45.0%
GTACATGAGTATGGGGATAC+AGG + chr7_2:28119309-28119328 Msa1054990:intron 45.0%
TCCCAAACCAATCATCCACT+GGG + chr7_2:28119873-28119892 Msa1054990:intron 45.0%
!! ACCCAGTGGATGATTGGTTT+GGG - chr7_2:28119877-28119896 None:intergenic 45.0%
AATCATCCACTGGGTGAAAC+CGG + chr7_2:28119882-28119901 Msa1054990:intron 45.0%
TGGGTGAAACCGGTGAATAA+AGG + chr7_2:28119892-28119911 Msa1054990:intron 45.0%
GACATTTGTAGTCTATGCCC+AGG + chr7_2:28120165-28120184 Msa1054990:intron 45.0%
GATCACGGACATCTTGATCA+TGG - chr7_2:28120234-28120253 None:intergenic 45.0%
ACATGACACATCATTGGAGG+GGG - chr7_2:28120315-28120334 None:intergenic 45.0%
GACATGACACATCATTGGAG+GGG - chr7_2:28120316-28120335 None:intergenic 45.0%
GCAACACAAAGTGGGTCAAT+GGG - chr7_2:28120424-28120443 None:intergenic 45.0%
TGCAACACAAAGTGGGTCAA+TGG - chr7_2:28120425-28120444 None:intergenic 45.0%
GAAGTCATGGATGAACCACA+TGG + chr7_2:28120561-28120580 Msa1054990:intron 45.0%
TATGACACTAAGCGTCCATG+TGG - chr7_2:28120579-28120598 None:intergenic 45.0%
AGGCGAATATAGGGAACACA+TGG - chr7_2:28120814-28120833 None:intergenic 45.0%
TGCATACAGATGCTGATGTG+AGG + chr7_2:28120995-28121014 Msa1054990:intron 45.0%
TTAGACGTGACACAGTGGAA+AGG + chr7_2:28121031-28121050 Msa1054990:CDS 45.0%
TAGACGTGACACAGTGGAAA+GGG + chr7_2:28121032-28121051 Msa1054990:CDS 45.0%
ATGTGATCAATCGCGTTGCA+TGG + chr7_2:28121200-28121219 Msa1054990:intron 45.0%
ACATGATTATCACCTCCACG+AGG - chr7_2:28121333-28121352 None:intergenic 45.0%
TTGGGTGAGTAGCAAAACTC+AGG - chr7_2:28121526-28121545 None:intergenic 45.0%
!!! TGGCTTAGGTTAGCTTTTGG+AGG + chr7_2:28121644-28121663 Msa1054990:intron 45.0%
AACCCCTGAAATAAGCCGAT+CGG + chr7_2:28121694-28121713 Msa1054990:intron 45.0%
GATCGGAGGTTACAATCGAA+TGG + chr7_2:28121711-28121730 Msa1054990:intron 45.0%
! GGGCTTTTGAGCCAAATTGA+GGG + chr7_2:28121777-28121796 Msa1054990:intron 45.0%
! GGCTTTTGAGCCAAATTGAG+GGG + chr7_2:28121778-28121797 Msa1054990:intron 45.0%
GCTTCAACACTCTCAGAAGT+TGG - chr7_2:28121928-28121947 None:intergenic 45.0%
! TTCTGATCGACTTATTCGCC+TGG + chr7_2:28122386-28122405 Msa1054990:CDS 45.0%
! CTATGAAGGCATACAGTACC+AGG - chr7_2:28122407-28122426 None:intergenic 45.0%
AAGCAAGTTGTCACTCCAAC+AGG + chr7_2:28122540-28122559 Msa1054990:CDS 45.0%
AAGGAGAGATGATTGCCTGT+TGG - chr7_2:28122558-28122577 None:intergenic 45.0%
CAACAGTAGGACACAGAAAC+TGG + chr7_2:28122685-28122704 Msa1054990:intron 45.0%
ACGATCACAGTTTCTTGCTG+TGG + chr7_2:28122923-28122942 Msa1054990:intron 45.0%
GCACTTCGTGCATGTTGTAA+AGG + chr7_2:28123077-28123096 Msa1054990:CDS 45.0%
ATTCACCGGGATGGAGATAA+TGG + chr7_2:28123122-28123141 Msa1054990:CDS 45.0%
GACTACTCTAGGCAACTTCA+TGG - chr7_2:28123175-28123194 None:intergenic 45.0%
!! TGGCGTTCTGAGATATCCTT+GGG - chr7_2:28123279-28123298 None:intergenic 45.0%
!! ATGGCGTTCTGAGATATCCT+TGG - chr7_2:28123280-28123299 None:intergenic 45.0%
GTGTAGTCAAATATCGGCCA+TGG + chr7_2:28123550-28123569 Msa1054990:intron 45.0%
TAGTCAAATATCGGCCATGG+CGG + chr7_2:28123553-28123572 Msa1054990:intron 45.0%
TGGCCATTATAATTAGGGGG+AGG - chr7_2:28123694-28123713 None:intergenic 45.0%
CTGGCTACTAACAACTACTC+TGG - chr7_2:28123845-28123864 None:intergenic 45.0%
TAGTCATTGGGTGATGTGAG+AGG + chr7_2:28123966-28123985 Msa1054990:intron 45.0%
AGTCATTGGGTGATGTGAGA+GGG + chr7_2:28123967-28123986 Msa1054990:intron 45.0%
TAGCTAGATAGCACCTCCTA+AGG + chr7_2:28124029-28124048 Msa1054990:intron 45.0%
TTTATGTTTCCAGGCTCCTG+AGG + chr7_2:28124468-28124487 Msa1054990:intron 45.0%
TTATGTTTCCAGGCTCCTGA+GGG + chr7_2:28124469-28124488 Msa1054990:intron 45.0%
! CAAACACAATGGATTCCCTC+AGG - chr7_2:28124487-28124506 None:intergenic 45.0%
GATGAGTTTCGTGTTATCCC+TGG + chr7_2:28124562-28124581 Msa1054990:CDS 45.0%
TTTCGTGTTATCCCTGGGTT+GGG + chr7_2:28124568-28124587 Msa1054990:CDS 45.0%
! GGTTGGGTGAATTTGGTGAT+CGG + chr7_2:28124584-28124603 Msa1054990:CDS 45.0%
!! AAAAAAATAATATATATTTG+AGG - chr7_2:28117029-28117048 None:intergenic 5.0%
!!! TTTTTTTTTTTTTGTAAAAT+TGG - chr7_2:28119562-28119581 None:intergenic 5.0%
AAGTTCGATCGACTACGCCA+TGG + chr7_2:28117123-28117142 Msa1054990:CDS 50.0%
! TTTTCCAGACGCAGTTCCAC+CGG - chr7_2:28117371-28117390 None:intergenic 50.0%
! CGGGTTGAAACCAGAAGAGT+TGG + chr7_2:28117808-28117827 Msa1054990:CDS 50.0%
TAGTCGCTCGCTGAAAATGC+TGG + chr7_2:28117956-28117975 Msa1054990:intron 50.0%
!! GTGAAGTTTGGCCTTGTCCA+TGG - chr7_2:28119059-28119078 None:intergenic 50.0%
GACAAGGCCAAACTTCACCA+TGG + chr7_2:28119061-28119080 Msa1054990:intron 50.0%
CCTTCCAACCTTCTGGTACT+GGG - chr7_2:28119846-28119865 None:intergenic 50.0%
CCAGTACCAGAAGGTTGGAA+GGG + chr7_2:28119844-28119863 Msa1054990:intron 50.0%
GTCCCAAACCAATCATCCAC+TGG + chr7_2:28119872-28119891 Msa1054990:intron 50.0%
! CACCCAGTGGATGATTGGTT+TGG - chr7_2:28119878-28119897 None:intergenic 50.0%
GGTTTCACCCAGTGGATGAT+TGG - chr7_2:28119883-28119902 None:intergenic 50.0%
!! TATTCACCGGTTTCACCCAG+TGG - chr7_2:28119891-28119910 None:intergenic 50.0%
!! GACATCAGAGGCATTGACCT+GGG - chr7_2:28120185-28120204 None:intergenic 50.0%
!! TGACATCAGAGGCATTGACC+TGG - chr7_2:28120186-28120205 None:intergenic 50.0%
CAAAGTGGGTCAATGGGAAG+AGG - chr7_2:28120418-28120437 None:intergenic 50.0%
TAAACGGAGAGAGGAAGGGT+GGG - chr7_2:28120954-28120973 None:intergenic 50.0%
TTAAACGGAGAGAGGAAGGG+TGG - chr7_2:28120955-28120974 None:intergenic 50.0%
AGACGTGACACAGTGGAAAG+GGG + chr7_2:28121033-28121052 Msa1054990:CDS 50.0%
GCTGATGTGATCATTCCTCG+TGG + chr7_2:28121315-28121334 Msa1054990:CDS 50.0%
GATGTGATCATTCCTCGTGG+AGG + chr7_2:28121318-28121337 Msa1054990:CDS 50.0%
! CATGTTGACCAAGCTTGGTG+CGG - chr7_2:28121383-28121402 None:intergenic 50.0%
TCAGGGGTTGAGCAATCCAA+GGG - chr7_2:28121683-28121702 None:intergenic 50.0%
TTCAGGGGTTGAGCAATCCA+AGG - chr7_2:28121684-28121703 None:intergenic 50.0%
! CTCCGATCGGCTTATTTCAG+GGG - chr7_2:28121699-28121718 None:intergenic 50.0%
! CCTCCGATCGGCTTATTTCA+GGG - chr7_2:28121700-28121719 None:intergenic 50.0%
! ACCTCCGATCGGCTTATTTC+AGG - chr7_2:28121701-28121720 None:intergenic 50.0%
! GGGGCTTTTGAGCCAAATTG+AGG + chr7_2:28121776-28121795 Msa1054990:intron 50.0%
CTGATGCCGAAGATCAGCAA+AGG - chr7_2:28122481-28122500 None:intergenic 50.0%
CTTTGCTGATCTTCGGCATC+AGG + chr7_2:28122479-28122498 Msa1054990:intron 50.0%
CAGGTTGTTGAGCATGGTCT+AGG + chr7_2:28122498-28122517 Msa1054990:intron 50.0%
AACGGCAAGAACCGAGTACA+AGG - chr7_2:28122577-28122596 None:intergenic 50.0%
!! GGTGAGCTAAGCTTTGAACC+AGG + chr7_2:28122814-28122833 Msa1054990:intron 50.0%
CAGGGTCAAGAAGCAAGACA+TGG - chr7_2:28123299-28123318 None:intergenic 50.0%
CTTCACCTGTAGCAAGCACA+GGG - chr7_2:28123317-28123336 None:intergenic 50.0%
TCTTCACCTGTAGCAAGCAC+AGG - chr7_2:28123318-28123337 None:intergenic 50.0%
!!! ATCGGCCATGGCGGATTTTT+TGG + chr7_2:28123562-28123581 Msa1054990:intron 50.0%
GGTTGCCAAAAAATCCGCCA+TGG - chr7_2:28123570-28123589 None:intergenic 50.0%
!!! GGATTTTTTGGCAACCGCCA+TGG + chr7_2:28123574-28123593 Msa1054990:intron 50.0%
TTGTTAGTAGCCAGCTGCCT+GGG + chr7_2:28123851-28123870 Msa1054990:intron 50.0%
! AACTATTTCTCCCAGGCAGC+TGG - chr7_2:28123864-28123883 None:intergenic 50.0%
GTCATTGGGTGATGTGAGAG+GGG + chr7_2:28123968-28123987 Msa1054990:intron 50.0%
! TCAGCTTTTACGCGCTCCTT+AGG - chr7_2:28124048-28124067 None:intergenic 50.0%
GTTTCGTGTTATCCCTGGGT+TGG + chr7_2:28124567-28124586 Msa1054990:CDS 50.0%
! ATCCCTGGGTTGGGTGAATT+TGG + chr7_2:28124577-28124596 Msa1054990:CDS 50.0%
CACCAAATTCACCCAACCCA+GGG - chr7_2:28124582-28124601 None:intergenic 50.0%
TCACCAAATTCACCCAACCC+AGG - chr7_2:28124583-28124602 None:intergenic 50.0%
ACCACCTTGGCTGCAATTTG+AGG + chr7_2:28124706-28124725 Msa1054990:three_prime_UTR 50.0%
CTTGCCTCAAATTGCAGCCA+AGG - chr7_2:28124713-28124732 None:intergenic 50.0%
TACGCCATGGAAGCAGCATC+TGG + chr7_2:28117136-28117155 Msa1054990:CDS 55.0%
ACGCCATGGAAGCAGCATCT+GGG + chr7_2:28117137-28117156 Msa1054990:CDS 55.0%
! ATCTGCTACGGTGATGGTGC+AGG + chr7_2:28117340-28117359 Msa1054990:intron 55.0%
! GGTGATGGTGCAGGTGTTTC+CGG + chr7_2:28117349-28117368 Msa1054990:intron 55.0%
TGGGATCGCAACCAGTGTTC+AGG - chr7_2:28119827-28119846 None:intergenic 55.0%
GTTGCGATCCCAGTACCAGA+AGG + chr7_2:28119835-28119854 Msa1054990:intron 55.0%
CGATCCCAGTACCAGAAGGT+TGG + chr7_2:28119839-28119858 Msa1054990:intron 55.0%
CCCAGTACCAGAAGGTTGGA+AGG + chr7_2:28119843-28119862 Msa1054990:intron 55.0%
CCCTTCCAACCTTCTGGTAC+TGG - chr7_2:28119847-28119866 None:intergenic 55.0%
CACATGCCCTTCCAACCTTC+TGG - chr7_2:28119853-28119872 None:intergenic 55.0%
TGACACATCATTGGAGGGGG+TGG - chr7_2:28120312-28120331 None:intergenic 55.0%
AAACGGAGAGAGGAAGGGTG+GGG - chr7_2:28120953-28120972 None:intergenic 55.0%
CAACACATCCGCACCAAGCT+TGG + chr7_2:28121372-28121391 Msa1054990:CDS 55.0%
AGGTTGCTCTATGCGACCCT+TGG + chr7_2:28121664-28121683 Msa1054990:intron 55.0%
CCCTGAAATAAGCCGATCGG+AGG + chr7_2:28121697-28121716 Msa1054990:intron 55.0%
GCTCTATGGGCCCCTCAATT+TGG - chr7_2:28121791-28121810 None:intergenic 55.0%
! CGGCATCAGGTTGTTGAGCA+TGG + chr7_2:28122492-28122511 Msa1054990:intron 55.0%
! CTTGACCCTGTGCTTGCTAC+AGG + chr7_2:28123309-28123328 Msa1054990:CDS 55.0%
! ATATCCGCCATGAAGCGCCA+TGG - chr7_2:28123594-28123613 None:intergenic 55.0%
!! ATGGCGCTTCATGGCGGATA+TGG + chr7_2:28123593-28123612 Msa1054990:intron 55.0%
GTTGTTAGTAGCCAGCTGCC+TGG + chr7_2:28123850-28123869 Msa1054990:intron 55.0%
! GCTTTTACGCGCTCCTTAGG+AGG - chr7_2:28124045-28124064 None:intergenic 55.0%
! AATGGATTCCCTCAGGAGCC+TGG - chr7_2:28124480-28124499 None:intergenic 55.0%
GCCTCAAATTGCAGCCAAGG+TGG - chr7_2:28124710-28124729 None:intergenic 55.0%
GATGGTGCAGGTGTTTCCGG+TGG + chr7_2:28117352-28117371 Msa1054990:intron 60.0%
GTTTCCGGTGGAACTGCGTC+TGG + chr7_2:28117364-28117383 Msa1054990:CDS 60.0%
! GGGCCCAGATGCTGCTTCCA+TGG - chr7_2:28117143-28117162 None:intergenic 65.0%
GCATCTGGGCCCCACTTCTC+CGG + chr7_2:28117151-28117170 Msa1054990:CDS 65.0%
AGACGGAGGCCGGAGAAGTG+GGG - chr7_2:28117163-28117182 None:intergenic 65.0%
GAGACGGAGGCCGGAGAAGT+GGG - chr7_2:28117164-28117183 None:intergenic 65.0%
TTCTCCGGCCTCCGTCTCGA+CGG + chr7_2:28117166-28117185 Msa1054990:CDS 65.0%
GCAACCGCCATGGCGCTTCA+TGG + chr7_2:28123584-28123603 Msa1054990:intron 65.0%
ACCGCCATGGCGCTTCATGG+CGG + chr7_2:28123587-28123606 Msa1054990:intron 65.0%
! TCCGCCATGAAGCGCCATGG+CGG - chr7_2:28123591-28123610 None:intergenic 65.0%
CGAGACGGAGGCCGGAGAAG+TGG - chr7_2:28117165-28117184 None:intergenic 70.0%
AGAGTCGGCCGCCGTCGAGA+CGG - chr7_2:28117180-28117199 None:intergenic 70.0%
TCCGGCCTCCGTCTCGACGG+CGG + chr7_2:28117169-28117188 Msa1054990:CDS 75.0%
! GCCGCCGTCGAGACGGAGGC+CGG - chr7_2:28117173-28117192 None:intergenic 80.0%
! GTCGGCCGCCGTCGAGACGG+AGG - chr7_2:28117177-28117196 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 28116964 28124894 28116964 ID=Msa1054990;Name=Msa1054990
chr7_2 mRNA 28116964 28124894 28116964 ID=Msa1054990-mRNA-1;Parent=Msa1054990;Name=Msa1054990-mRNA-1;_AED=0.12;_eAED=0.13;_QI=145|0.92|0.85|1|1|1|14|267|486
chr7_2 exon 28116964 28117277 28116964 ID=Msa1054990-mRNA-1:exon:5869;Parent=Msa1054990-mRNA-1
chr7_2 exon 28117362 28117453 28117362 ID=Msa1054990-mRNA-1:exon:5870;Parent=Msa1054990-mRNA-1
chr7_2 exon 28117794 28117863 28117794 ID=Msa1054990-mRNA-1:exon:5871;Parent=Msa1054990-mRNA-1
chr7_2 exon 28118694 28118812 28118694 ID=Msa1054990-mRNA-1:exon:5872;Parent=Msa1054990-mRNA-1
chr7_2 exon 28120187 28120283 28120187 ID=Msa1054990-mRNA-1:exon:5873;Parent=Msa1054990-mRNA-1
chr7_2 exon 28121004 28121083 28121004 ID=Msa1054990-mRNA-1:exon:5874;Parent=Msa1054990-mRNA-1
chr7_2 exon 28121258 28121452 28121258 ID=Msa1054990-mRNA-1:exon:5875;Parent=Msa1054990-mRNA-1
chr7_2 exon 28122324 28122407 28122324 ID=Msa1054990-mRNA-1:exon:5876;Parent=Msa1054990-mRNA-1
chr7_2 exon 28122501 28122584 28122501 ID=Msa1054990-mRNA-1:exon:5877;Parent=Msa1054990-mRNA-1
chr7_2 exon 28122741 28122814 28122741 ID=Msa1054990-mRNA-1:exon:5878;Parent=Msa1054990-mRNA-1
chr7_2 exon 28123058 28123151 28123058 ID=Msa1054990-mRNA-1:exon:5879;Parent=Msa1054990-mRNA-1
chr7_2 exon 28123258 28123330 28123258 ID=Msa1054990-mRNA-1:exon:5880;Parent=Msa1054990-mRNA-1
chr7_2 exon 28124315 28124397 28124315 ID=Msa1054990-mRNA-1:exon:5881;Parent=Msa1054990-mRNA-1
chr7_2 exon 28124481 28124894 28124481 ID=Msa1054990-mRNA-1:exon:5882;Parent=Msa1054990-mRNA-1
chr7_2 five_prime_UTR 28116964 28117108 28116964 ID=Msa1054990-mRNA-1:five_prime_utr;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28117109 28117277 28117109 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28117362 28117453 28117362 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28117794 28117863 28117794 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28118694 28118812 28118694 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28120187 28120283 28120187 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28121004 28121083 28121004 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28121258 28121452 28121258 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28122324 28122407 28122324 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28122501 28122584 28122501 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28122741 28122814 28122741 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28123058 28123151 28123058 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28123258 28123330 28123258 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28124315 28124397 28124315 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 CDS 28124481 28124627 28124481 ID=Msa1054990-mRNA-1:cds;Parent=Msa1054990-mRNA-1
chr7_2 three_prime_UTR 28124628 28124894 28124628 ID=Msa1054990-mRNA-1:three_prime_utr;Parent=Msa1054990-mRNA-1
Gene Sequence

>Msa1054990

ATGCCGGACGAAACAAGTTCGATCGACTACGCCATGGAAGCAGCATCTGGGCCCCACTTCTCCGGCCTCCGTCTCGACGGCGGCCGACTCTCATCTTCCCCAAAATCTTCTCTCTCTATCAATTCAATCCTAACCAAAGATTCTCTTCTCAATCAACCCTTTGTTATTCGTGTTTCCGGTGGAACTGCGTCTGGAAAAACCACTGTTTGTGATATGATCATTCAACAGCTTCATGATCATCGTGTTGTCCTTGTCAATCAGGATTCGTTTTATCGCGGGTTGAAACCAGAAGAGTTGGAGCATGTTCATGAGTACAATTTTGATCATCCTGATGCTTTCGACACGGAGCAACTGCTAGAGTGTATGAAGAAGCTCATCAGTGGCCAAAGAGTCAAAATTCCCATTTACGACTTCAAGAAGCACCAACGCTCTTCTGATAGTTTTCGTCAGGTCAATGCCTCTGATGTCATTATATTGGAGGGAATTCTTGTATTCCATGATCAAGATGTCCGTGATCTGATGAACATGAAGATTTTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGACACAGTGGAAAGGGGCAGAGACATAAACTCTGTTCTTGAAATGTATGCGAAGTTTGTTAAACCTGCTTTTGATGACTTTGTTCTACCATCAAAGAAATATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATCGATTTGATTACACAACACATCCGCACCAAGCTTGGTCAACATGATCTATGCAAAATATATCCAAATGTTTATGTTATTCAATCTACATTCCAGATAAGGGGGATGCATACTTTGATTCGTGACAAAGAAATATCAAAGCATGATTTTGTATTTTATTCTGATCGACTTATTCGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACAGAAAAGCAAGTTGTCACTCCAACAGGCAATCATCTCTCCTTGTACTCGGTTCATATTACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAGAAATTATGTGGTGTTTCAATTATTAGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGGCATTAAAATTGGAAAAATTCTGATTCACCGGGATGGAGATAATGGAAAACAGCTTATATATGAGAAGCTTCCCAAGGATATCTCAGAACGCCATGTCTTGCTTCTTGACCCTGTGCTTGCTACAGGTAACTCAGCCAACCAAGCAATTGAATTACTTATTCAAAAAGGAGTACCAGAATCCCACATTATATTCCTGAATCTCATTTCTGCTCCTGAGGGAATCCATTGTGTTTGTAAAAGGTTTCCATCATTGAAGATTGTGACATCTGAGATTGATGTTGCATTAAATGATGAGTTTCGTGTTATCCCTGGGTTGGGTGAATTTGGTGATCGGTACTTTGGCACCGATGATTGA
Protein sequence

>Msa1054990

MPDETSSIDYAMEAASGPHFSGLRLDGGRLSSSPKSSLSINSILTKDSLLNQPFVIRVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLKPEELEHVHEYNFDHPDAFDTEQLLECMKKLISGQRVKIPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQDVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEMYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLITQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDKEISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGNHLSLYSVHITGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNDEFRVIPGLGEFGDRYFGTDD*