AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1443620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443620 MtrunA17_Chr1g0210284 94.231 364 21 0 279 642 231 594 0.0 675
Msa1443620 MtrunA17_Chr1g0210284 83.264 239 16 3 1 215 346 584 4.30e-129 392
Msa1443620 MtrunA17_Chr1g0210284 98.718 78 1 0 213 290 14 91 1.21e-41 159
Msa1443620 MtrunA17_Chr1g0210274 93.681 364 23 0 279 642 231 594 0.0 672
Msa1443620 MtrunA17_Chr1g0210274 79.600 250 27 3 1 226 346 595 3.26e-128 390
Msa1443620 MtrunA17_Chr1g0210274 94.872 78 4 0 213 290 14 91 4.36e-40 155
Msa1443620 MtrunA17_Chr1g0210291 66.848 368 113 4 279 641 230 593 9.01e-164 482
Msa1443620 MtrunA17_Chr1g0210291 64.542 251 57 4 1 219 344 594 2.72e-97 310
Msa1443620 MtrunA17_Chr1g0210291 69.620 79 24 0 212 290 12 90 2.03e-29 123
Msa1443620 MtrunA17_Chr7g0264861 60.256 312 117 2 329 635 295 604 1.02e-125 385
Msa1443620 MtrunA17_Chr7g0264861 54.508 244 81 4 1 214 358 601 8.55e-79 262
Msa1443620 MtrunA17_Chr7g0264861 71.053 76 22 0 215 290 19 94 4.43e-29 122
Msa1443620 MtrunA17_Chr1g0171591 55.618 356 137 5 294 631 244 596 1.16e-123 379
Msa1443620 MtrunA17_Chr1g0171591 56.148 244 77 5 1 214 353 596 1.50e-78 261
Msa1443620 MtrunA17_Chr1g0171591 65.823 79 27 0 212 290 11 89 1.76e-29 123
Msa1443620 MtrunA17_Chr1g0174101 52.909 361 159 3 278 634 228 581 7.96e-120 369
Msa1443620 MtrunA17_Chr1g0174101 56.828 227 74 3 1 203 344 570 7.33e-75 251
Msa1443620 MtrunA17_Chr1g0174101 62.025 79 30 0 212 290 11 89 3.07e-27 116
Msa1443620 MtrunA17_Chr2g0330551 41.880 234 124 1 381 614 317 538 4.61e-56 199
Msa1443620 MtrunA17_Chr2g0330551 38.647 207 115 3 3 197 332 538 3.04e-36 143
Msa1443620 MtrunA17_Chr5g0442481 37.712 236 136 2 379 614 309 533 5.20e-53 190
Msa1443620 MtrunA17_Chr5g0442481 35.096 208 122 3 3 197 326 533 1.57e-34 138
Msa1443620 MtrunA17_Chr4g0037301 40.175 229 126 2 377 605 317 534 4.41e-47 174
Msa1443620 MtrunA17_Chr4g0037301 36.139 202 110 5 3 188 336 534 1.19e-26 114
Msa1443620 MtrunA17_Chr7g0225191 40.756 238 128 4 377 604 342 576 5.58e-47 174
Msa1443620 MtrunA17_Chr7g0225191 36.559 186 96 6 3 177 361 535 2.47e-25 110
Msa1443620 MtrunA17_Chr4g0064981 36.245 229 140 3 377 605 337 559 6.89e-40 154
Msa1443620 MtrunA17_Chr4g0064981 29.902 204 125 4 3 188 356 559 4.88e-20 94.4
Msa1443620 MtrunA17_Chr5g0405621 34.016 244 145 3 377 620 305 532 6.00e-38 148
Msa1443620 MtrunA17_Chr5g0405621 30.093 216 129 5 3 203 324 532 4.95e-21 97.1
Msa1443620 MtrunA17_Chr3g0132161 32.302 291 165 6 333 605 278 554 1.39e-36 144
Msa1443620 MtrunA17_Chr3g0132161 28.070 228 115 8 3 188 334 554 9.04e-16 80.9
Msa1443620 MtrunA17_Chr3g0132161 42.254 71 41 0 220 290 10 80 6.58e-11 65.5
Msa1443620 MtrunA17_Chr2g0304561 36.364 231 137 3 377 605 331 553 1.58e-36 144
Msa1443620 MtrunA17_Chr2g0304561 32.857 210 111 6 3 188 350 553 8.30e-20 93.6
Msa1443620 MtrunA17_Chr2g0333371 31.441 229 114 5 377 605 104 289 4.74e-30 120
Msa1443620 MtrunA17_Chr2g0333371 30.769 195 82 8 11 188 131 289 5.80e-16 79.3
Msa1443620 MtrunA17_Chr5g0408921 28.099 242 160 8 380 617 338 569 1.38e-13 73.9
Msa1443620 MtrunA17_Chr7g0251871 27.160 243 161 8 380 618 332 562 2.67e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443620 AT2G39210.1 65.363 358 111 2 291 635 238 595 2.02e-159 471
Msa1443620 AT2G39210.1 63.964 222 56 3 1 198 345 566 5.79e-88 286
Msa1443620 AT2G39210.1 77.632 76 17 0 215 290 11 86 5.64e-32 131
Msa1443620 AT2G28120.1 57.012 328 138 2 291 617 234 559 3.12e-125 382
Msa1443620 AT2G28120.1 59.375 224 67 3 1 200 336 559 8.07e-77 256
Msa1443620 AT2G28120.1 70.833 72 21 0 219 290 11 82 7.26e-27 115
Msa1443620 AT2G34355.2 37.037 270 145 3 352 611 116 370 2.78e-57 198
Msa1443620 AT2G34355.2 38.725 204 113 3 3 194 167 370 2.14e-39 149
Msa1443620 AT1G74780.1 42.128 235 124 1 381 615 311 533 2.85e-56 199
Msa1443620 AT1G74780.1 37.500 208 118 3 3 198 326 533 5.20e-37 145
Msa1443620 AT1G74780.1 46.154 65 35 0 219 283 1 65 3.72e-11 66.6
Msa1443620 AT2G34355.1 37.037 270 145 3 352 611 266 520 1.23e-55 197
Msa1443620 AT2G34355.1 38.725 204 113 3 3 194 317 520 3.40e-38 149
Msa1443620 AT2G34350.1 36.667 270 144 3 342 611 280 522 7.19e-53 190
Msa1443620 AT2G34350.1 36.765 204 117 3 3 194 319 522 2.66e-35 140
Msa1443620 AT2G34350.2 36.667 270 144 3 342 611 280 522 7.19e-53 190
Msa1443620 AT2G34350.2 36.765 204 117 3 3 194 319 522 2.66e-35 140
Msa1443620 AT1G18940.1 40.271 221 120 1 385 605 308 516 9.99e-52 187
Msa1443620 AT1G18940.1 35.859 198 115 3 3 188 319 516 2.09e-33 135
Msa1443620 AT1G18940.1 47.761 67 35 0 217 283 1 67 3.87e-12 69.7
Msa1443620 AT2G16660.1 39.035 228 128 2 377 604 313 529 2.23e-47 175
Msa1443620 AT2G16660.1 34.000 200 115 4 3 187 332 529 1.15e-25 112
Msa1443620 AT4G34950.1 35.907 259 145 3 346 604 313 550 2.99e-47 175
Msa1443620 AT4G34950.1 34.000 200 115 4 3 187 353 550 5.25e-26 113
Msa1443620 AT3G01930.1 38.235 238 142 3 377 614 239 471 2.21e-44 165
Msa1443620 AT3G01930.1 30.244 205 114 6 17 197 272 471 5.59e-21 97.1
Msa1443620 AT3G01930.2 38.235 238 142 3 377 614 352 584 9.41e-44 166
Msa1443620 AT3G01930.2 30.244 205 114 6 17 197 385 584 7.57e-21 97.4
Msa1443620 AT5G14120.1 37.975 237 142 3 377 613 347 578 3.39e-43 164
Msa1443620 AT5G14120.1 29.703 202 117 5 17 196 380 578 1.50e-20 96.3
Msa1443620 AT5G50630.1 33.882 304 174 5 304 604 251 530 4.03e-43 163
Msa1443620 AT5G50630.1 32.057 209 112 6 3 187 328 530 1.70e-20 95.9
Msa1443620 AT5G50520.1 33.882 304 174 5 304 604 251 530 4.03e-43 163
Msa1443620 AT5G50520.1 32.057 209 112 6 3 187 328 530 1.70e-20 95.9
Msa1443620 AT1G80530.1 34.498 229 136 4 377 605 330 544 1.12e-34 139
Msa1443620 AT1G80530.1 31.795 195 109 6 11 188 357 544 9.49e-19 90.5
Msa1443620 AT2G16660.2 46.835 79 40 1 377 455 313 389 9.56e-17 83.2
Msa1443620 AT3G01630.2 26.407 231 158 5 380 605 339 562 1.49e-11 67.8
Msa1443620 AT3G01630.1 26.407 231 158 5 380 605 321 544 1.69e-11 67.8
Msa1443620 AT3G01930.3 47.368 76 38 1 377 452 352 425 2.95e-11 66.6

Find 109 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCAACTTTGTATAATTT+TGG 0.150653 tig0030488:-22395 Msa1443620:CDS
TGCTGTTGTTTCACTTATTT+TGG 0.181515 tig0030488:-22183 Msa1443620:CDS
TGCTGTTGTTAACCTTATTT+TGG 0.216909 tig0030488:-25730 Msa1443620:CDS
ATTGCAGCTGCAACTTTCTT+TGG 0.248818 tig0030488:-25753 Msa1443620:intron
TACGTAGCTTCAGTAATAAT+TGG 0.273011 tig0030488:-22485 Msa1443620:CDS
TTGTCCTAGCCACCAAAATA+AGG 0.303085 tig0030488:+25718 None:intergenic
GTGGCATGTATTTGTGGTAT+TGG 0.316784 tig0030488:-26302 Msa1443620:CDS
GTGACATATACAAGAGATAT+AGG 0.328395 tig0030488:-25680 Msa1443620:CDS
TATGCAGCTTCAGTGATTAT+CGG 0.345986 tig0030488:-26032 Msa1443620:CDS
ACCACCGTCCGGTGATGAAT+TGG 0.352452 tig0030488:+23746 None:intergenic
GTAAGCATTTGGAATTATCT+AGG 0.357538 tig0030488:-22644 Msa1443620:CDS
CTTGGAAAGCATAGAATAGA+AGG 0.363836 tig0030488:-25828 Msa1443620:CDS
AGTTTCACACAGGGTGAGTT+TGG 0.364101 tig0030488:-23070 Msa1443620:CDS
TTGACAGCAATTGATAATCT+TGG 0.365572 tig0030488:-22725 Msa1443620:CDS
CTTGGAAAGCATAGAATAGA+AGG 0.368622 tig0030488:-22281 Msa1443620:CDS
CTATTTGTGGCATGTATTTG+TGG 0.387438 tig0030488:-22761 Msa1443620:CDS
TTGACAGCAGTTGATAATCT+TGG 0.396343 tig0030488:-26272 Msa1443620:CDS
TTGTGTCTTTAGTAAGCATT+TGG 0.401481 tig0030488:-22655 Msa1443620:CDS
GTGGCATGTATTTGTGGTGT+TGG 0.412454 tig0030488:-22755 Msa1443620:CDS
AGATATGTTGATACTATTTG+TGG 0.416529 tig0030488:-22774 Msa1443620:CDS
ATATAGGGAAGAAGCTGAAA+TGG 0.422458 tig0030488:-25664 Msa1443620:CDS
CTCCGGCGGCTGCCATGATT+AGG 0.422545 tig0030488:+23704 None:intergenic
CTATTTGTGGCATGTATTTG+TGG 0.422626 tig0030488:-26308 Msa1443620:CDS
AGAGTTAAAGTAAGCATAAG+AGG 0.426460 tig0030488:+22563 None:intergenic
ATTGATAATCTTGGTCAGAT+AGG 0.426987 tig0030488:-22716 Msa1443620:CDS
AGACATGTTGATACTATTTG+TGG 0.431839 tig0030488:-26321 None:intergenic
CAAAGAAGCTAAGAAACAAT+TGG 0.433049 tig0030488:-22309 Msa1443620:CDS
CAAAGAAGCTAAGAAACAAT+TGG 0.433049 tig0030488:-25856 Msa1443620:CDS
TCATTGAAGAGAACAAGATT+TGG 0.435135 tig0030488:-22994 Msa1443620:CDS
GGAAGTATAACAAGTCCAAT+TGG 0.435702 tig0030488:-25921 Msa1443620:intron
GTACAGAGAAGAAGCTGAAA+TGG 0.437234 tig0030488:-22117 Msa1443620:CDS
AACACATCTTCCCACCACTT+TGG 0.442991 tig0030488:+22851 None:intergenic
AACTCTCTTTGTCTCATGTG+TGG 0.452502 tig0030488:-22546 Msa1443620:CDS
AGCAACGTTGGTGTCCTTGC+AGG 0.461948 tig0030488:-23583 Msa1443620:CDS
ACTCTCTTTGTCTCATGTGT+GGG 0.462025 tig0030488:-22545 Msa1443620:CDS
TTAAGCACATATAAGCCAAT+TGG 0.462132 tig0030488:+25906 None:intergenic
GTTGATAATCTTGGTCAGAT+AGG 0.465696 tig0030488:-26263 Msa1443620:CDS
AGAGTCAAAGAAAGCATAAG+AGG 0.471726 tig0030488:+26110 None:intergenic
GAAGCTGCATAGAGACCCTT+TGG 0.475496 tig0030488:+26044 None:intergenic
TTTCGCCTCCTTCCTAATCA+TGG 0.475895 tig0030488:-23716 Msa1443620:CDS
ACCGAACATGTAGGTGGCTC+CGG 0.476564 tig0030488:+23687 None:intergenic
TGACATATACAAGAGATATA+GGG 0.477639 tig0030488:-25679 Msa1443620:CDS
TAAGGAGGTTTAGTGTACTT+TGG 0.479046 tig0030488:+23626 None:intergenic
GACTCTCTTTGTCTCGTGTG+TGG 0.483546 tig0030488:-26093 Msa1443620:CDS
ACTCTCTTTGTCTCGTGTGT+GGG 0.489234 tig0030488:-26092 Msa1443620:CDS
GCCGGAGCCACCTACATGTT+CGG 0.490142 tig0030488:-23688 Msa1443620:CDS
CCTTCTGTTACTATTTGCAC+TGG 0.490393 tig0030488:+22938 None:intergenic
AAAATGTTCTGAAACAAATC+CGG 0.495163 tig0030488:+26157 None:intergenic
GGAAGTGTAGCAAGTCCACT+TGG 0.498928 tig0030488:-22374 Msa1443620:CDS
GCATGTATTTGTGGTGTTGG+TGG 0.506795 tig0030488:-22752 Msa1443620:CDS
TTCCTAATCATGGCAGCCGC+CGG 0.509362 tig0030488:-23706 Msa1443620:CDS
GATAGCATTTGGTGTGCCAA+AGG 0.517982 tig0030488:-26060 Msa1443620:CDS
CAACGAACTCTATCCACCTT+GGG 0.520279 tig0030488:-23554 Msa1443620:intron
TATTGTATAATCATCACCTC+TGG 0.521894 tig0030488:+22817 None:intergenic
GCATGTATTTGTGGTATTGG+TGG 0.523323 tig0030488:-26299 Msa1443620:CDS
GCACACCAAATGCTATCAAA+AGG 0.525284 tig0030488:+26066 None:intergenic
ATAGCATTTGGTGTGCCAAA+GGG 0.533343 tig0030488:-26059 Msa1443620:CDS
GTTACTATTTGCACTGGTGA+AGG 0.536206 tig0030488:+22944 None:intergenic
AAGAAACAATTGGAAGCACT+TGG 0.542138 tig0030488:-22299 Msa1443620:CDS
AAGAAACAATTGGAAGCACT+TGG 0.542138 tig0030488:-25846 Msa1443620:CDS
TAGGGAAGAAGCTGAAATGG+TGG 0.542633 tig0030488:-25661 Msa1443620:CDS
ACAGAGGAAGATGACAAAGT+TGG 0.548475 tig0030488:-22071 Msa1443620:CDS
GTATAATCATCACCTCTGGC+TGG 0.551037 tig0030488:+22821 None:intergenic
AAAGCATAGAATAGAAGGGC+AGG 0.553260 tig0030488:-25823 Msa1443620:CDS
GAAGCTACGTAGAGACCCTC+TGG 0.564193 tig0030488:+22497 None:intergenic
TGCAGCGGTAATAATAATGA+AGG 0.565571 tig0030488:+22217 None:intergenic
TAATCATCACCTCTGGCTGG+TGG 0.569807 tig0030488:+22824 None:intergenic
GGCGGCTGCCATGATTAGGA+AGG 0.570452 tig0030488:+23708 None:intergenic
GTTTGGTTTAAGTGCTGCTG+TGG 0.571063 tig0030488:-23053 Msa1443620:CDS
GTGCTTAATGTGAAGATCAC+TGG 0.572972 tig0030488:-22344 Msa1443620:CDS
GTGCTTAATGTGAAGATCAC+TGG 0.572972 tig0030488:-25891 Msa1443620:CDS
GGGCAGGAATTGAATTGTGT+TGG 0.581328 tig0030488:-25807 Msa1443620:intron
TCAATGAAAACAACGGCAAG+TGG 0.581784 tig0030488:+23010 None:intergenic
GAAAATGACGAACCACCGTC+CGG 0.588466 tig0030488:+23735 None:intergenic
TCAACGAACTCTATCCACCT+TGG 0.589582 tig0030488:-23555 Msa1443620:CDS
AAAGTAAGCATAAGAGGACG+AGG 0.591288 tig0030488:+22569 None:intergenic
AAAGAAAGCATAAGAGGACG+AGG 0.591288 tig0030488:+26116 None:intergenic
GGGCGTGAATTGAATTGTGT+TGG 0.593657 tig0030488:-22260 Msa1443620:CDS
GGAAGAAGCTGAAATGGTGG+AGG 0.594474 tig0030488:-25658 Msa1443620:CDS
CTCACTGTCCAATTCATCAC+CGG 0.597382 tig0030488:-23754 Msa1443620:CDS
GGCTGCCATGATTAGGAAGG+AGG 0.603051 tig0030488:+23711 None:intergenic
GAAGAATAGTAGTTTCACAC+AGG 0.608304 tig0030488:-23080 Msa1443620:CDS
CAGAGAAGAAGCTGAAATGG+TGG 0.612740 tig0030488:-22114 Msa1443620:CDS
GTTCTCTTCAATGAAAACAA+CGG 0.618801 tig0030488:+23003 None:intergenic
GCACATCAAATGCTATCAGA+AGG 0.619230 tig0030488:+22519 None:intergenic
GAAGTGTAGCAAGTCCACTT+GGG 0.630096 tig0030488:-22373 Msa1443620:CDS
AGAAGAAGCTGAAATGGTGG+AGG 0.632991 tig0030488:-22111 Msa1443620:CDS
GATAGCATTTGATGTGCCAG+AGG 0.635342 tig0030488:-22513 Msa1443620:CDS
ATGGTGGAGGTAAAGAACGA+GGG 0.640025 tig0030488:-25645 Msa1443620:CDS
TACATGTTCGGTCTATACTC+CGG 0.641076 tig0030488:-23676 Msa1443620:CDS
CCAGTGCAAATAGTAACAGA+AGG 0.641583 tig0030488:-22938 Msa1443620:CDS
ATAGCATTTGATGTGCCAGA+GGG 0.644810 tig0030488:-22512 Msa1443620:CDS
GGAGTATAGACCGAACATGT+AGG 0.649476 tig0030488:+23678 None:intergenic
GAACATGTAGGTGGCTCCGG+CGG 0.649974 tig0030488:+23690 None:intergenic
TTGGAAAGCATAGAATAGAA+GGG 0.652646 tig0030488:-25827 Msa1443620:CDS
TTGGAAAGCATAGAATAGAA+GGG 0.653057 tig0030488:-22280 Msa1443620:CDS
TTAAGCACATATAACCCAAG+TGG 0.655955 tig0030488:+22359 None:intergenic
CTGTCCAATTCATCACCGGA+CGG 0.661899 tig0030488:-23750 Msa1443620:CDS
ACAAAGGTGACATATACAAG+AGG 0.662424 tig0030488:-22139 Msa1443620:CDS
GTTCGTTGACTAGTCCTGCA+AGG 0.663578 tig0030488:+23569 None:intergenic
ATTGTTAAAACTACCCAAGG+TGG 0.665582 tig0030488:+23541 None:intergenic
AGTTGGTCAACAGCAGCATG+TGG 0.667095 tig0030488:-22054 Msa1443620:CDS
GTGTTCAATCCACCAGCCAG+AGG 0.678931 tig0030488:-22833 Msa1443620:CDS
AAAGAACGTGGAAAAGACAG+AGG 0.686229 tig0030488:-22087 Msa1443620:CDS
TCCAATTCATCACCGGACGG+TGG 0.689064 tig0030488:-23747 Msa1443620:CDS
GTATAGACCGAACATGTAGG+TGG 0.689369 tig0030488:+23681 None:intergenic
AAGAATAGTAGTTTCACACA+GGG 0.699884 tig0030488:-23079 Msa1443620:CDS
AATGGTGGAGGTAAAGAACG+AGG 0.714318 tig0030488:-25646 Msa1443620:CDS
AATGGTGGAGGTAAAGAACG+TGG 0.730173 tig0030488:-22099 Msa1443620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTATCAAATTTTGT+TGG - tig0030488:24200-24219 Msa1443620:intron 10.0%
!!! AGTAAAATTTGTTTTATTTT+GGG + tig0030488:24383-24402 None:intergenic 10.0%
!!! TAGTAAAATTTGTTTTATTT+TGG + tig0030488:24384-24403 None:intergenic 10.0%
!!! ATTTTACTAATTAATATTGA+TGG - tig0030488:24395-24414 Msa1443620:intron 10.0%
!!! ATAATATTTTTGTATATTGT+TGG + tig0030488:24537-24556 None:intergenic 10.0%
!! AACAATATACAAAAATATTA+TGG - tig0030488:24536-24555 Msa1443620:intron 10.0%
!! TTCATATTTATACTTAATTG+TGG + tig0030488:22844-22863 None:intergenic 15.0%
!!! TCATATTTACACTTTTTTAA+GGG + tig0030488:22872-22891 None:intergenic 15.0%
!!! TTCATATTTACACTTTTTTA+AGG + tig0030488:22873-22892 None:intergenic 15.0%
!!! TTTTCTATATCTATCTAAAA+AGG - tig0030488:22915-22934 Msa1443620:CDS 15.0%
!! TTTCTATATCTATCTAAAAA+GGG - tig0030488:22916-22935 Msa1443620:CDS 15.0%
!! AAACAAAATAGTTTAAATGA+AGG + tig0030488:22983-23002 None:intergenic 15.0%
!!! GATTTAAATTTTTATTGTAG+TGG + tig0030488:23063-23082 None:intergenic 15.0%
!! TATGATTCTAATATCTTAAA+AGG + tig0030488:23437-23456 None:intergenic 15.0%
!! ATGAAAATGAATAGAATAAA+TGG + tig0030488:23575-23594 None:intergenic 15.0%
!! TTAATATATCATAAAGATCA+TGG - tig0030488:23617-23636 Msa1443620:CDS 15.0%
!! AATATACAAAAATATTATGG+CGG - tig0030488:24539-24558 Msa1443620:intron 15.0%
!!! GTAAGTATTTGGAATTATTT+AGG - tig0030488:22169-22188 Msa1443620:CDS 20.0%
!!! TATGCAACTTTGTATAATTT+TGG - tig0030488:22418-22437 Msa1443620:CDS 20.0%
!! GGATAAAATTGAAAATGAAA+AGG + tig0030488:22962-22981 None:intergenic 20.0%
!! TCCACGATAAATAATATTAT+GGG - tig0030488:23665-23684 Msa1443620:CDS 20.0%
!! GTGTGTATGTATATATATAA+AGG - tig0030488:24277-24296 Msa1443620:intron 20.0%
!!! CAAAATCTTTGAAAAAACTA+AGG + tig0030488:24755-24774 None:intergenic 20.0%
!!! CTTAGTTTTTTCAAAGATTT+TGG - tig0030488:24753-24772 Msa1443620:intron 20.0%
!!! TTTTTGGTTACTTTATGATT+TGG - tig0030488:24859-24878 Msa1443620:intron 20.0%
!!! TTACTTTATGATTTGGTTAT+CGG - tig0030488:24866-24885 Msa1443620:intron 20.0%
!! TATTTATTATGATGACACAA+AGG - tig0030488:25088-25107 Msa1443620:intron 20.0%
!!! GTAATAATTGGATTTTGTTT+TGG - tig0030488:25887-25906 Msa1443620:CDS 20.0%
!!! TATGCAACTTTGTATAATTT+TGG - tig0030488:22418-22437 Msa1443620:CDS 20.0%
! TTGTGTCTTTAGTAAGTATT+TGG - tig0030488:22158-22177 Msa1443620:CDS 25.0%
!!! AAAATGTTCTGAAACAAATC+CGG + tig0030488:22206-22225 None:intergenic 25.0%
! GATATAATGGCAAAAAGTAA+TGG + tig0030488:22376-22395 None:intergenic 25.0%
!! TCCAAAAAGTTCTGATATAA+TGG + tig0030488:22389-22408 None:intergenic 25.0%
! TGACATATACAAGAGATATA+GGG - tig0030488:22681-22700 Msa1443620:CDS 25.0%
! CTACGAAATCTCATTAAAAT+AGG - tig0030488:23030-23049 Msa1443620:CDS 25.0%
! CAAAAATAAGTCAATATTCC+CGG - tig0030488:23274-23293 Msa1443620:intron 25.0%
!! TAATGCCTTAAAATTTTGGA+TGG + tig0030488:23327-23346 None:intergenic 25.0%
!!! ATCCAAAATTTTAAGGCATT+AGG - tig0030488:23326-23345 Msa1443620:intron 25.0%
!! TACCTAATGCCTTAAAATTT+TGG + tig0030488:23331-23350 None:intergenic 25.0%
! GAGGATGATAATATCTTAAA+AGG + tig0030488:23527-23546 None:intergenic 25.0%
! CTCCACGATAAATAATATTA+TGG - tig0030488:23664-23683 Msa1443620:CDS 25.0%
! CCACGATAAATAATATTATG+GGG - tig0030488:23666-23685 Msa1443620:CDS 25.0%
! GAGAATAAAAACATGAACTT+TGG + tig0030488:23784-23803 None:intergenic 25.0%
!!! ACTTACCACCATATTTTTTT+GGG + tig0030488:23827-23846 None:intergenic 25.0%
!! AATCTTTGAAAAAACTAAGG+AGG + tig0030488:24752-24771 None:intergenic 25.0%
!!! TTTTGGTCTTGCTATTTTTT+TGG + tig0030488:24895-24914 None:intergenic 25.0%
! ATGTGTCTTTACATTTGTAT+AGG - tig0030488:24924-24943 Msa1443620:intron 25.0%
!!! AAGGCTTTGATTTTGTTTAT+TGG - tig0030488:25107-25126 Msa1443620:intron 25.0%
!!! CTTTGATTTTGTTTATTGGT+TGG - tig0030488:25111-25130 Msa1443620:intron 25.0%
! AATTTCTTGTATGTTTCACT+TGG - tig0030488:25221-25240 Msa1443620:intron 25.0%
! AGATATGTTGATACTATTTG+TGG - tig0030488:25586-25605 Msa1443620:intron 25.0%
! GATATAATGGCAAAAAGTAA+TGG + tig0030488:22376-22395 None:intergenic 25.0%
!! CCATTATATCAGAACTTTTT+GGG - tig0030488:22386-22405 Msa1443620:CDS 25.0%
!! AAAGTGCTTATGCTTTTCTT+TGG + tig0030488:22139-22158 None:intergenic 30.0%
!! GTGATTATCGGATTTTGTTT+TGG - tig0030488:22340-22359 Msa1443620:CDS 30.0%
! GCCATTATATCAGAACTTTT+TGG - tig0030488:22385-22404 Msa1443620:CDS 30.0%
TTAAGCACATATAAGCCAAT+TGG + tig0030488:22457-22476 None:intergenic 30.0%
CAAAGAAGCTAAGAAACAAT+TGG - tig0030488:22504-22523 Msa1443620:CDS 30.0%
! TTGGAAAGCATAGAATAGAA+GGG - tig0030488:22533-22552 Msa1443620:CDS 30.0%
!! TGCTGTTGTTAACCTTATTT+TGG - tig0030488:22630-22649 Msa1443620:CDS 30.0%
!!! TGTTGTTAACCTTATTTTGG+TGG - tig0030488:22633-22652 Msa1443620:CDS 30.0%
! AGGACAAGAAAGTTTTACAA+AGG - tig0030488:22658-22677 Msa1443620:CDS 30.0%
GTGACATATACAAGAGATAT+AGG - tig0030488:22680-22699 Msa1443620:CDS 30.0%
! TAAAATTTTGGATGGAGATG+TGG + tig0030488:23319-23338 None:intergenic 30.0%
! CATCTCCATCCAAAATTTTA+AGG - tig0030488:23319-23338 Msa1443620:intron 30.0%
GCTATAAATGTGCAAAATGT+TGG + tig0030488:23377-23396 None:intergenic 30.0%
TAGAATCATAATATCCACCA+TGG - tig0030488:23447-23466 Msa1443620:intron 30.0%
AATATCATGTTGAGAATCCA+TGG + tig0030488:23467-23486 None:intergenic 30.0%
TAGAATCATAATATCCACCA+TGG - tig0030488:23447-23466 Msa1443620:intron 30.0%
ACAACAAAGATAGAATGAAG+AGG + tig0030488:23546-23565 None:intergenic 30.0%
CCCCATAATATTATTTATCG+TGG + tig0030488:23669-23688 None:intergenic 30.0%
TAGTAAACCTTTCACTAGAA+AGG + tig0030488:23710-23729 None:intergenic 30.0%
! TGACTATTTCTTTGTTTCAC+AGG - tig0030488:23751-23770 Msa1443620:CDS 30.0%
TTCATGCTCCCAAAAAAATA+TGG - tig0030488:23816-23835 Msa1443620:intron 30.0%
!!! GACTTACCACCATATTTTTT+TGG + tig0030488:23828-23847 None:intergenic 30.0%
! GTGGTAAGTCTCTTTAATTT+AGG - tig0030488:23838-23857 Msa1443620:intron 30.0%
! TCTCTTTAATTTAGGTGTCA+AGG - tig0030488:23846-23865 Msa1443620:intron 30.0%
CTAATTTCTACTGTAAAGTG+AGG + tig0030488:23961-23980 None:intergenic 30.0%
! CTTTTTGCAACCTTTTGTAA+AGG - tig0030488:24093-24112 Msa1443620:intron 30.0%
TTTAGTCAACAAGATTGTCA+TGG + tig0030488:24245-24264 None:intergenic 30.0%
CAATTAAATAGAGAGAGAGA+GGG + tig0030488:24439-24458 None:intergenic 30.0%
TCAATTAAATAGAGAGAGAG+AGG + tig0030488:24440-24459 None:intergenic 30.0%
TACAAAAATATTATGGCGGT+TGG - tig0030488:24543-24562 Msa1443620:intron 30.0%
!!! AAGTGTTGTTTTTATGTCAC+CGG + tig0030488:24706-24725 None:intergenic 30.0%
!!! GGTGCTATACTAAACTTTTT+TGG - tig0030488:24843-24862 Msa1443620:intron 30.0%
AAATAGCAAGACCAAAAGTT+TGG - tig0030488:24898-24917 Msa1443620:intron 30.0%
AACAGGTTTCATATATCGAA+TGG + tig0030488:25171-25190 None:intergenic 30.0%
AAGAATAGTAGTTTCACACA+GGG - tig0030488:25281-25300 Msa1443620:intron 30.0%
GTTCTCTTCAATGAAAACAA+CGG + tig0030488:25360-25379 None:intergenic 30.0%
TCATTGAAGAGAACAAGATT+TGG - tig0030488:25366-25385 Msa1443620:intron 30.0%
AAAAAAAGATCCAAAGTGGT+GGG - tig0030488:25499-25518 Msa1443620:intron 30.0%
TATTGTATAATCATCACCTC+TGG + tig0030488:25546-25565 None:intergenic 30.0%
! TTGACAGCAATTGATAATCT+TGG - tig0030488:25635-25654 Msa1443620:CDS 30.0%
! ATTGATAATCTTGGTCAGAT+AGG - tig0030488:25644-25663 Msa1443620:CDS 30.0%
!! AAAGTGCTTATGCTTTTCTT+TGG + tig0030488:22139-22158 None:intergenic 30.0%
TTGTGTCTTTAGTAAGCATT+TGG - tig0030488:25705-25724 Msa1443620:CDS 30.0%
! GTAAGCATTTGGAATTATCT+AGG - tig0030488:25716-25735 Msa1443620:CDS 30.0%
AGAGTTAAAGTAAGCATAAG+AGG + tig0030488:25800-25819 None:intergenic 30.0%
TACGTAGCTTCAGTAATAAT+TGG - tig0030488:25875-25894 Msa1443620:CDS 30.0%
! GCCATTATATCAGAACTTTT+TGG - tig0030488:22385-22404 Msa1443620:CDS 30.0%
! CCCAAAAAGTTCTGATATAA+TGG + tig0030488:25936-25955 None:intergenic 30.0%
CAAAGAAGCTAAGAAACAAT+TGG - tig0030488:22504-22523 Msa1443620:CDS 30.0%
! TTGGAAAGCATAGAATAGAA+GGG - tig0030488:22533-22552 Msa1443620:CDS 30.0%
!!! TGCTGTTGTTTCACTTATTT+TGG - tig0030488:26177-26196 Msa1443620:intron 30.0%
!!! TGTTGTTTCACTTATTTTGG+TGG - tig0030488:26180-26199 Msa1443620:intron 30.0%
! AGGACAAGAAAGTTTTACAA+AGG - tig0030488:22658-22677 Msa1443620:CDS 30.0%
CTATTTGTGGCATGTATTTG+TGG - tig0030488:22052-22071 Msa1443620:CDS 35.0%
!! TTGACAGCAGTTGATAATCT+TGG - tig0030488:22088-22107 Msa1443620:CDS 35.0%
!! GTTGATAATCTTGGTCAGAT+AGG - tig0030488:22097-22116 Msa1443620:CDS 35.0%
!! TATTTAGGACGTGTTTTCTC+CGG - tig0030488:22184-22203 Msa1443620:CDS 35.0%
! AGAGTCAAAGAAAGCATAAG+AGG + tig0030488:22253-22272 None:intergenic 35.0%
TATGCAGCTTCAGTGATTAT+CGG - tig0030488:22328-22347 Msa1443620:CDS 35.0%
!!! GATTTTGTTTTGGTGCTCAA+TGG - tig0030488:22350-22369 Msa1443620:CDS 35.0%
! GGAAGTATAACAAGTCCAAT+TGG - tig0030488:22439-22458 Msa1443620:CDS 35.0%
!! AAGAAACAATTGGAAGCACT+TGG - tig0030488:22514-22533 Msa1443620:CDS 35.0%
! CTTGGAAAGCATAGAATAGA+AGG - tig0030488:22532-22551 Msa1443620:CDS 35.0%
!!! TTAACCTTATTTTGGTGGCT+AGG - tig0030488:22638-22657 Msa1443620:CDS 35.0%
ATATAGGGAAGAAGCTGAAA+TGG - tig0030488:22696-22715 Msa1443620:CDS 35.0%
ACAGAAGAAGATGACAAAGT+TGG - tig0030488:22742-22761 Msa1443620:CDS 35.0%
CAACTTAGAAATAGGGCAAA+TGG - tig0030488:22775-22794 Msa1443620:CDS 35.0%
AGAAATAGGGCAAATGGTTA+AGG - tig0030488:22781-22800 Msa1443620:CDS 35.0%
TGATCTATGACATGGGATAT+CGG + tig0030488:22816-22835 None:intergenic 35.0%
GGATCTATGATCTATGACAT+GGG + tig0030488:22823-22842 None:intergenic 35.0%
TGGATCTATGATCTATGACA+TGG + tig0030488:22824-22843 None:intergenic 35.0%
!!! TATTGGTTTTCAAGTGTGAG+TGG + tig0030488:23125-23144 None:intergenic 35.0%
TTATACTTGATCCAAGCACT+AGG - tig0030488:23175-23194 Msa1443620:intron 35.0%
TCATTCATTCAGTGTATGAG+TGG + tig0030488:23413-23432 None:intergenic 35.0%
! CAATAAGCCTTTCTAGTGAA+AGG - tig0030488:23700-23719 Msa1443620:CDS 35.0%
ATGCTCCCAAAAAAATATGG+TGG - tig0030488:23819-23838 Msa1443620:intron 35.0%
CTCTACTATAAGGTCAAGAA+AGG - tig0030488:23896-23915 Msa1443620:intron 35.0%
! ACCTTTTGTAAAGGTGATGT+TGG - tig0030488:24102-24121 Msa1443620:intron 35.0%
TCCAACATCACCTTTACAAA+AGG + tig0030488:24106-24125 None:intergenic 35.0%
! TTTTGTAAAGGTGATGTTGG+AGG - tig0030488:24105-24124 Msa1443620:intron 35.0%
TATTAACTCATCTGCTGATG+AGG + tig0030488:24135-24154 None:intergenic 35.0%
GGTGACATAAAAACAACACT+TGG - tig0030488:24705-24724 Msa1443620:intron 35.0%
TAAGGAGGTTTAGTGTACTT+TGG + tig0030488:24737-24756 None:intergenic 35.0%
!! AAAGATTTTGGTAGCAACGT+TGG - tig0030488:24765-24784 Msa1443620:intron 35.0%
ATTGTTAAAACTACCCAAGG+TGG + tig0030488:24822-24841 None:intergenic 35.0%
CCTATTGTTAAAACTACCCA+AGG + tig0030488:24825-24844 None:intergenic 35.0%
!!! CCTTGGGTAGTTTTAACAAT+AGG - tig0030488:24822-24841 Msa1443620:intron 35.0%
! AGACACATTTGCCAAACTTT+TGG + tig0030488:24912-24931 None:intergenic 35.0%
! TTCTCAGTCTTTTGCAAACA+CGG - tig0030488:24953-24972 Msa1443620:intron 35.0%
GGAATTCTTAAAGGCTATGT+TGG - tig0030488:25029-25048 Msa1443620:intron 35.0%
AAAGCAAAAGAAATAGCAGC+AGG + tig0030488:25140-25159 None:intergenic 35.0%
TCGACAAGTTAATGAGCTTA+AGG - tig0030488:25190-25209 Msa1443620:intron 35.0%
GTGTGAAACTACTATTCTTC+TGG + tig0030488:25280-25299 None:intergenic 35.0%
GAAGAATAGTAGTTTCACAC+AGG - tig0030488:25280-25299 Msa1443620:intron 35.0%
! GCAGAGTAAAAAACTAGCTT+TGG - tig0030488:25388-25407 Msa1443620:intron 35.0%
CTCCAAAAAAAGATCCAAAG+TGG - tig0030488:25495-25514 Msa1443620:intron 35.0%
!!! CACCACTTTGGATCTTTTTT+TGG + tig0030488:25500-25519 None:intergenic 35.0%
CAAAAAAAGATCCAAAGTGG+TGG - tig0030488:25498-25517 Msa1443620:intron 35.0%
CTATTTGTGGCATGTATTTG+TGG - tig0030488:22052-22071 Msa1443620:CDS 35.0%
!!! GATTTTGTTTTGGTGCTCAA+TGG - tig0030488:22350-22369 Msa1443620:CDS 35.0%
TTAAGCACATATAACCCAAG+TGG + tig0030488:26004-26023 None:intergenic 35.0%
!! AAGAAACAATTGGAAGCACT+TGG - tig0030488:22514-22533 Msa1443620:CDS 35.0%
! CTTGGAAAGCATAGAATAGA+AGG - tig0030488:22532-22551 Msa1443620:CDS 35.0%
TGCAGCGGTAATAATAATGA+AGG + tig0030488:26146-26165 None:intergenic 35.0%
!!! ATTACCGCTGCAACATTTTT+TGG - tig0030488:26154-26173 Msa1443620:CDS 35.0%
!!! TTTCACTTATTTTGGTGGCT+AGG - tig0030488:26185-26204 Msa1443620:intron 35.0%
ACAAAGGTGACATATACAAG+AGG - tig0030488:22674-22693 Msa1443620:CDS 35.0%
GTGGCATGTATTTGTGGTAT+TGG - tig0030488:22058-22077 Msa1443620:CDS 40.0%
! GCATGTATTTGTGGTATTGG+TGG - tig0030488:22061-22080 Msa1443620:CDS 40.0%
! AAAGAAAGCATAAGAGGACG+AGG + tig0030488:22247-22266 None:intergenic 40.0%
!! GGACACCTTTTGATAGCATT+TGG - tig0030488:22289-22308 Msa1443620:CDS 40.0%
GCACACCAAATGCTATCAAA+AGG + tig0030488:22297-22316 None:intergenic 40.0%
!! ATAGCATTTGGTGTGCCAAA+GGG - tig0030488:22301-22320 Msa1443620:CDS 40.0%
GTGCTTAATGTGAAGATCAC+TGG - tig0030488:22469-22488 Msa1443620:CDS 40.0%
AAAGCATAGAATAGAAGGGC+AGG - tig0030488:22537-22556 Msa1443620:CDS 40.0%
ATTGCAGCTGCAACTTTCTT+TGG - tig0030488:22607-22626 Msa1443620:CDS 40.0%
TTGTCCTAGCCACCAAAATA+AGG + tig0030488:22645-22664 None:intergenic 40.0%
AAGATGACAAAGTTGGCATG+CGG - tig0030488:22749-22768 Msa1443620:CDS 40.0%
TGCGGTGACAACTTAGAAAT+AGG - tig0030488:22767-22786 Msa1443620:CDS 40.0%
GCGGTGACAACTTAGAAATA+GGG - tig0030488:22768-22787 Msa1443620:CDS 40.0%
! AAAAAGGGCAGACACGATTT+TGG - tig0030488:22931-22950 Msa1443620:CDS 40.0%
! AAAAGGGCAGACACGATTTT+GGG - tig0030488:22932-22951 Msa1443620:CDS 40.0%
! GTGAGTGGTTAGTCATTCAT+AGG + tig0030488:23110-23129 None:intergenic 40.0%
ACACTTGAGGGGAAGATTAT+TGG + tig0030488:23142-23161 None:intergenic 40.0%
TGGTGGAAACTTACACTTGA+GGG + tig0030488:23154-23173 None:intergenic 40.0%
CTTGGATCAAGTATAAGTGG+TGG + tig0030488:23171-23190 None:intergenic 40.0%
GTGCTTGGATCAAGTATAAG+TGG + tig0030488:23174-23193 None:intergenic 40.0%
AAGATTGAGATCCTAGTGCT+TGG + tig0030488:23189-23208 None:intergenic 40.0%
ATTAGAACCCAAGTTCAGCT+TGG + tig0030488:23219-23238 None:intergenic 40.0%
! TGGGTTCTAATACCACTTGT+TGG - tig0030488:23228-23247 Msa1443620:intron 40.0%
! GGGTTCTAATACCACTTGTT+GGG - tig0030488:23229-23248 Msa1443620:intron 40.0%
! GGTTCTAATACCACTTGTTG+GGG - tig0030488:23230-23249 Msa1443620:intron 40.0%
! TACCACTTGTTGGGGAAATA+AGG - tig0030488:23238-23257 Msa1443620:intron 40.0%
! ACCACTTGTTGGGGAAATAA+GGG - tig0030488:23239-23258 Msa1443620:intron 40.0%
ATATTCCCGGAGCATAATAG+AGG - tig0030488:23287-23306 Msa1443620:intron 40.0%
TATTCCCGGAGCATAATAGA+GGG - tig0030488:23288-23307 Msa1443620:intron 40.0%
ATCATGTTGAGAATCCATGG+TGG + tig0030488:23464-23483 None:intergenic 40.0%
ATGCATTAGAGAATCCATGG+TGG + tig0030488:23503-23522 None:intergenic 40.0%
GGTATGCATTAGAGAATCCA+TGG + tig0030488:23506-23525 None:intergenic 40.0%
ATAGTAGAGAGCAAGAGAGT+CGG + tig0030488:23885-23904 None:intergenic 40.0%
CTCTCTTGCTCTCTACTATA+AGG - tig0030488:23886-23905 Msa1443620:intron 40.0%
CTTGTTGAGAAGAAGCAACA+TGG + tig0030488:23936-23955 None:intergenic 40.0%
!! TTTACTTTTCTCCGAGAGAG+AGG - tig0030488:23991-24010 Msa1443620:intron 40.0%
GCTCATATGATTGCTCATTG+TGG - tig0030488:24025-24044 Msa1443620:intron 40.0%
CAAAAGGTTGCAAAAAGAGC+AGG + tig0030488:24090-24109 None:intergenic 40.0%
TTAAATAGAGAGAGAGAGGG+AGG + tig0030488:24436-24455 None:intergenic 40.0%
! GGTAATTCCATTGGTGTTCA+TGG - tig0030488:24564-24583 Msa1443620:intron 40.0%
! TCCATTGGTGTTCATGGTTT+AGG - tig0030488:24570-24589 Msa1443620:intron 40.0%
TCCTAAACCATGAACACCAA+TGG + tig0030488:24574-24593 None:intergenic 40.0%
TACATGTTCGGTCTATACTC+CGG - tig0030488:24684-24703 Msa1443620:intron 40.0%
! TCTCAGTCTTTTGCAAACAC+GGG - tig0030488:24954-24973 Msa1443620:intron 40.0%
AAGAATTTCCCTGAATCTCG+TGG - tig0030488:24996-25015 Msa1443620:intron 40.0%
!!! GCGGTTTTGGGAATTCTTAA+AGG - tig0030488:25020-25039 Msa1443620:intron 40.0%
!! AAAGGCTATGTTGGTCTTAG+TGG - tig0030488:25038-25057 Msa1443620:intron 40.0%
!! AGCTCATTAACTTGTCGAAC+AGG + tig0030488:25188-25207 None:intergenic 40.0%
TATGTTTCACTTGGTCTAGC+TGG - tig0030488:25230-25249 Msa1443620:intron 40.0%
TCAATGAAAACAACGGCAAG+TGG + tig0030488:25353-25372 None:intergenic 40.0%
! GTTACTATTTGCACTGGTGA+AGG + tig0030488:25419-25438 None:intergenic 40.0%
CCTTCTGTTACTATTTGCAC+TGG + tig0030488:25425-25444 None:intergenic 40.0%
CCAGTGCAAATAGTAACAGA+AGG - tig0030488:25422-25441 Msa1443620:intron 40.0%
!! TATCTAGGACGTGTTTTCTC+AGG - tig0030488:25731-25750 Msa1443620:CDS 40.0%
AAAGTAAGCATAAGAGGACG+AGG + tig0030488:25794-25813 None:intergenic 40.0%
AACTCTCTTTGTCTCATGTG+TGG - tig0030488:25814-25833 Msa1443620:CDS 40.0%
ACTCTCTTTGTCTCATGTGT+GGG - tig0030488:25815-25834 Msa1443620:CDS 40.0%
GCACATCAAATGCTATCAGA+AGG + tig0030488:25844-25863 None:intergenic 40.0%
ATAGCATTTGATGTGCCAGA+GGG - tig0030488:25848-25867 Msa1443620:CDS 40.0%
GTGCTTAATGTGAAGATCAC+TGG - tig0030488:22469-22488 Msa1443620:CDS 40.0%
AGCACCAAAAAATGTTGCAG+CGG + tig0030488:26161-26180 None:intergenic 40.0%
GTACAGAGAAGAAGCTGAAA+TGG - tig0030488:26243-26262 Msa1443620:CDS 40.0%
AAAGAACGTGGAAAAGACAG+AGG - tig0030488:26273-26292 Msa1443620:CDS 40.0%
ACAGAGGAAGATGACAAAGT+TGG - tig0030488:26289-26308 Msa1443620:CDS 40.0%
ACTCTCTTTGTCTCGTGTGT+GGG - tig0030488:22268-22287 Msa1443620:CDS 45.0%
!! GATAGCATTTGGTGTGCCAA+AGG - tig0030488:22300-22319 Msa1443620:CDS 45.0%
GGGCAGGAATTGAATTGTGT+TGG - tig0030488:22553-22572 Msa1443620:CDS 45.0%
TAGGGAAGAAGCTGAAATGG+TGG - tig0030488:22699-22718 Msa1443620:CDS 45.0%
! AATGGTGGAGGTAAAGAACG+AGG - tig0030488:22714-22733 Msa1443620:CDS 45.0%
! ATGGTGGAGGTAAAGAACGA+GGG - tig0030488:22715-22734 Msa1443620:CDS 45.0%
GGTGGAAACTTACACTTGAG+GGG + tig0030488:23153-23172 None:intergenic 45.0%
! GTGGTGGAAACTTACACTTG+AGG + tig0030488:23155-23174 None:intergenic 45.0%
! CCACTTGTTGGGGAAATAAG+GGG - tig0030488:23240-23259 Msa1443620:intron 45.0%
TGTCTCCCTCTATTATGCTC+CGG + tig0030488:23296-23315 None:intergenic 45.0%
AAGAGAGTCGGTCTCAAAAG+TGG + tig0030488:23873-23892 None:intergenic 45.0%
! GTTGGTGCTTACTGCTTACT+TGG + tig0030488:24519-24538 None:intergenic 45.0%
!! ATGGCGGTTGGTAATTCCAT+TGG - tig0030488:24555-24574 Msa1443620:intron 45.0%
CTCACTGTCCAATTCATCAC+CGG - tig0030488:24606-24625 Msa1443620:intron 45.0%
TTTCGCCTCCTTCCTAATCA+TGG - tig0030488:24644-24663 Msa1443620:intron 45.0%
GTATAGACCGAACATGTAGG+TGG + tig0030488:24682-24701 None:intergenic 45.0%
GGAGTATAGACCGAACATGT+AGG + tig0030488:24685-24704 None:intergenic 45.0%
TCAACGAACTCTATCCACCT+TGG - tig0030488:24805-24824 Msa1443620:intron 45.0%
CAACGAACTCTATCCACCTT+GGG - tig0030488:24806-24825 Msa1443620:intron 45.0%
TGGTCTAGCTGGATTCTTGT+TGG - tig0030488:25241-25260 Msa1443620:intron 45.0%
AGTTTCACACAGGGTGAGTT+TGG - tig0030488:25290-25309 Msa1443620:intron 45.0%
! GTTTGGTTTAAGTGCTGCTG+TGG - tig0030488:25307-25326 Msa1443620:intron 45.0%
AACACATCTTCCCACCACTT+TGG + tig0030488:25512-25531 None:intergenic 45.0%
GTATAATCATCACCTCTGGC+TGG + tig0030488:25542-25561 None:intergenic 45.0%
GTGGCATGTATTTGTGGTGT+TGG - tig0030488:25605-25624 Msa1443620:intron 45.0%
! GCATGTATTTGTGGTGTTGG+TGG - tig0030488:25608-25627 Msa1443620:intron 45.0%
GATAGCATTTGATGTGCCAG+AGG - tig0030488:25847-25866 Msa1443620:CDS 45.0%
GAAGTGTAGCAAGTCCACTT+GGG - tig0030488:25987-26006 Msa1443620:CDS 45.0%
GGGCGTGAATTGAATTGTGT+TGG - tig0030488:26100-26119 Msa1443620:CDS 45.0%
CAGAGAAGAAGCTGAAATGG+TGG - tig0030488:26246-26265 Msa1443620:CDS 45.0%
AGAAGAAGCTGAAATGGTGG+AGG - tig0030488:26249-26268 Msa1443620:CDS 45.0%
! AATGGTGGAGGTAAAGAACG+TGG - tig0030488:22714-22733 Msa1443620:CDS 45.0%
GACTCTCTTTGTCTCGTGTG+TGG - tig0030488:22267-22286 Msa1443620:CDS 50.0%
GAAGCTGCATAGAGACCCTT+TGG + tig0030488:22319-22338 None:intergenic 50.0%
GGAAGAAGCTGAAATGGTGG+AGG - tig0030488:22702-22721 Msa1443620:CDS 50.0%
GAACCCAAGTTCAGCTTGGT+GGG + tig0030488:23215-23234 None:intergenic 50.0%
AGAACCCAAGTTCAGCTTGG+TGG + tig0030488:23216-23235 None:intergenic 50.0%
! CCCCTTATTTCCCCAACAAG+TGG + tig0030488:23243-23262 None:intergenic 50.0%
GTCTCCCTCTATTATGCTCC+GGG + tig0030488:23295-23314 None:intergenic 50.0%
!! CCAACGATTAGCCTCTCTCT+CGG + tig0030488:24005-24024 None:intergenic 50.0%
CGAGAGAGAGGCTAATCGTT+GGG - tig0030488:24003-24022 Msa1443620:intron 50.0%
CTGTCCAATTCATCACCGGA+CGG - tig0030488:24610-24629 Msa1443620:intron 50.0%
GAAAATGACGAACCACCGTC+CGG + tig0030488:24628-24647 None:intergenic 50.0%
! GTTCGTTGACTAGTCCTGCA+AGG + tig0030488:24794-24813 None:intergenic 50.0%
TAATCATCACCTCTGGCTGG+TGG + tig0030488:25539-25558 None:intergenic 50.0%
! GGAAGTGTAGCAAGTCCACT+TGG - tig0030488:25986-26005 Msa1443620:CDS 50.0%
AGTTGGTCAACAGCAGCATG+TGG - tig0030488:26306-26325 Msa1443620:CDS 50.0%
TGCTCCCACCAAGCTGAACT+TGG - tig0030488:23208-23227 Msa1443620:intron 55.0%
GCTCCCACCAAGCTGAACTT+GGG - tig0030488:23209-23228 Msa1443620:intron 55.0%
CCGAGAGAGAGGCTAATCGT+TGG - tig0030488:24002-24021 Msa1443620:intron 55.0%
TCCAATTCATCACCGGACGG+TGG - tig0030488:24613-24632 Msa1443620:intron 55.0%
ACCACCGTCCGGTGATGAAT+TGG + tig0030488:24617-24636 None:intergenic 55.0%
GGCTGCCATGATTAGGAAGG+AGG + tig0030488:24652-24671 None:intergenic 55.0%
TTCCTAATCATGGCAGCCGC+CGG - tig0030488:24654-24673 Msa1443620:intron 55.0%
ACCGAACATGTAGGTGGCTC+CGG + tig0030488:24676-24695 None:intergenic 55.0%
! AGCAACGTTGGTGTCCTTGC+AGG - tig0030488:24777-24796 Msa1443620:intron 55.0%
TTTCCCTGAATCTCGTGGCG+CGG - tig0030488:25001-25020 Msa1443620:intron 55.0%
AAACCGCGCCACGAGATTCA+GGG + tig0030488:25007-25026 None:intergenic 55.0%
AAAACCGCGCCACGAGATTC+AGG + tig0030488:25008-25027 None:intergenic 55.0%
! TGAATCTCGTGGCGCGGTTT+TGG - tig0030488:25007-25026 Msa1443620:intron 55.0%
! GAATCTCGTGGCGCGGTTTT+GGG - tig0030488:25008-25027 Msa1443620:intron 55.0%
GTGTTCAATCCACCAGCCAG+AGG - tig0030488:25527-25546 Msa1443620:intron 55.0%
GAAGCTACGTAGAGACCCTC+TGG + tig0030488:25866-25885 None:intergenic 55.0%
GGCGGCTGCCATGATTAGGA+AGG + tig0030488:24655-24674 None:intergenic 60.0%
GAACATGTAGGTGGCTCCGG+CGG + tig0030488:24673-24692 None:intergenic 60.0%
GCCGGAGCCACCTACATGTT+CGG - tig0030488:24672-24691 Msa1443620:intron 60.0%
CTCCGGCGGCTGCCATGATT+AGG + tig0030488:24659-24678 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0030488 gene 22043 26339 22043 ID=Msa1443620;Name=Msa1443620
tig0030488 mRNA 22043 26339 22043 ID=Msa1443620-mRNA-1;Parent=Msa1443620;Name=Msa1443620-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|0.2|0.16|6|0|642
tig0030488 exon 26210 26339 26210 ID=Msa1443620-mRNA-1:exon:14026;Parent=Msa1443620-mRNA-1
tig0030488 exon 25954 26191 25954 ID=Msa1443620-mRNA-1:exon:14025;Parent=Msa1443620-mRNA-1
tig0030488 exon 25808 25938 25808 ID=Msa1443620-mRNA-1:exon:14024;Parent=Msa1443620-mRNA-1
tig0030488 exon 25623 25768 25623 ID=Msa1443620-mRNA-1:exon:14023;Parent=Msa1443620-mRNA-1
tig0030488 exon 23555 23779 23555 ID=Msa1443620-mRNA-1:exon:14022;Parent=Msa1443620-mRNA-1
tig0030488 exon 22043 23101 22043 ID=Msa1443620-mRNA-1:exon:14021;Parent=Msa1443620-mRNA-1
tig0030488 CDS 26210 26339 26210 ID=Msa1443620-mRNA-1:cds;Parent=Msa1443620-mRNA-1
tig0030488 CDS 25954 26191 25954 ID=Msa1443620-mRNA-1:cds;Parent=Msa1443620-mRNA-1
tig0030488 CDS 25808 25938 25808 ID=Msa1443620-mRNA-1:cds;Parent=Msa1443620-mRNA-1
tig0030488 CDS 25623 25768 25623 ID=Msa1443620-mRNA-1:cds;Parent=Msa1443620-mRNA-1
tig0030488 CDS 23555 23779 23555 ID=Msa1443620-mRNA-1:cds;Parent=Msa1443620-mRNA-1
tig0030488 CDS 22043 23101 22043 ID=Msa1443620-mRNA-1:cds;Parent=Msa1443620-mRNA-1
Gene Sequence

>Msa1443620

ATGTTGATACTATTTGTGGCATGTATTTGTGGTATTGGTGGATCATTGACAGCAGTTGATAATCTTGGTCAGATAGGAACATCACTTAGATATCCAAAGAAAAGCATAAGCACTTTTGTGTCTTTAGTAAGACGTGTTTTCTCCGGATTTGTTTCAGAACATTTTCTAACAAAGTACAGATTTCCTCGTCCTCTTATGCTTTCTTTGACTCTCTTTGTCTCGTGTGTGGGACACCTTTTGATAGCATTTGGTGTGCCAAAGGGTCTCTATGCAGCTTCAGTGATTATCGGATTTTGTTTTGGTGCTCAATGGCCATTACTTTTTGCCATTATATCAGAACTTTTTGGACTTAAATATTATGCAACTTTTATAACAAGTCCAATTGGCTTATATGTGCTTAATGTGAAGATCACTGGTCATTTGTATGACAAAGAAGCTAAGAAACAATTGGAAGCACTTGGAAAGCATAGAATAGAAGGGCAGGAATTGAATTGTGTTGCTGCAACTTTCTTTGGTGCTGTTGTTAACCTTATTTTGGTGGCTAGGACAAGAAAGTTTTACAAAGGTGACATATACAAGAGATATAGGGAAGAAGCTGAAATGGTGGAGGTAAAGAACGAGGGAAAAACAGAAGAAGATGACAAAAGTCTCACTGTCCAATTCATCACCGGACGGTGGTTCGTCATTTTCGCCTCCTTCCTAATCATGGCAGCCGCCGGAGCCACCTACATGTTCGGTCTATACTCCGGTGACATAAAAACAACACTTGGTTATGACCAAAGTACACTAAACCTCCTTAGTTTTTTCAAAGATTTTGGTAGCAACGTTGGTGTCCTTGCAGGACTAGTCAACGAACTCTATCCACCTTGGAAGAATAGTAGTTTCACACAGGGTGAGTTTGGTTTAAGTGCTGCTGTGGTTATTTTCTTGCTTTTTCTTCCACTTGCCGTTGTTTTCATTGAAGAGAACAAGATTTGGCAGAGTAAAAAACTAGCTTTGGTTGATCCTTCACCAGTGCAAATAGTAACAGAAGGTGAAACTGTAACTGAAACAGAAAAAGTCAACTCTGCTGTTTCAGTTTCAGCTCCAAAAAAAGATCCAAAGTGGTGGGAAGATGTGTTCAATCCACCAGCCAGAGGTGATGATTATACAATACTTCAAGCACTTTTCAGCATAGATATGTTGATACTATTTGTGGCATGTATTTGTGGTGTTGGTGGAACTTTGACAGCAATTGATAATCTTGGTCAGATAGGAACATCACTTAGATATCCAAAGAAAAGCATAAGCACTTTTGTGTCTTTAGTAAGCATTTGGAATTATCTAGGACGTGTTTTCTCAGGATTTGTTTCTGAACATTTTCTAACGAAGTACAGATTTCCTCGTCCTCTTATGCTTACTTTAACTCTCTTTGTCTCATGTGTGGGACACCTTCTGATAGCATTTGATGTGCCAGAGGGTCTCTACGTAGCTTCAGTAATAATTGGATTTTGTTTTGGTGCTCAATGGCCATTACTTTTTGCCATTATATCAGAACTTTTTGGGCTAAAATATTATGCAACTTTGTATAATTTTGGAAGTGTAGCAAGTCCACTTGGGTTATATGTGCTTAATGTGAAGATCACTGGTCATTTGTATGACAAAGAAGCTAAGAAACAATTGGAAGCACTTGGAAAGCATAGAATAGAAGGGCGTGAATTGAATTGTGTTGGTGTTGATTGTTTCAAGTTATCCTTCATTATTATTACCGCTGCAACATTTTTTGGTGCTGTTGTTTCACTTATTTTGGTGGCTAGGACAAGAAAGTTTTACAAAGGTGACATATACAAGAGGTACAGAGAAGAAGCTGAAATGGTGGAGGTAAAGAACGTGGAAAAGACAGAGGAAGATGACAAAGTTGGTCAACAGCAGCATGTGGTGACAACTTAG

Protein sequence

>Msa1443620

MLILFVACICGIGGSLTAVDNLGQIGTSLRYPKKSISTFVSLVRRVFSGFVSEHFLTKYRFPRPLMLSLTLFVSCVGHLLIAFGVPKGLYAASVIIGFCFGAQWPLLFAIISELFGLKYYATFITSPIGLYVLNVKITGHLYDKEAKKQLEALGKHRIEGQELNCVAATFFGAVVNLILVARTRKFYKGDIYKRYREEAEMVEVKNEGKTEEDDKSLTVQFITGRWFVIFASFLIMAAAGATYMFGLYSGDIKTTLGYDQSTLNLLSFFKDFGSNVGVLAGLVNELYPPWKNSSFTQGEFGLSAAVVIFLLFLPLAVVFIEENKIWQSKKLALVDPSPVQIVTEGETVTETEKVNSAVSVSAPKKDPKWWEDVFNPPARGDDYTILQALFSIDMLILFVACICGVGGTLTAIDNLGQIGTSLRYPKKSISTFVSLVSIWNYLGRVFSGFVSEHFLTKYRFPRPLMLTLTLFVSCVGHLLIAFDVPEGLYVASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGSVASPLGLYVLNVKITGHLYDKEAKKQLEALGKHRIEGRELNCVGVDCFKLSFIIITAATFFGAVVSLILVARTRKFYKGDIYKRYREEAEMVEVKNVEKTEEDDKVGQQQHVVTT*