Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280940 | P93333.1 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 2.78e-106 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280940 | sp|P93333|PR101_MEDTR | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 3.48e-109 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280940 | Q7FNV7 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 1.33e-106 | 310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046680 | Msa0280940 | 0.832504 | 9.102242e-56 | -8.615850e-47 |
| Msa0129290 | Msa0280940 | 0.801544 | 8.564895e-49 | -8.615850e-47 |
| Msa0200080 | Msa0280940 | 0.857871 | 1.215135e-62 | -8.615850e-47 |
| Msa0200090 | Msa0280940 | 0.834605 | 2.720571e-56 | -8.615850e-47 |
| Msa0242700 | Msa0280940 | 0.856432 | 3.230559e-62 | -8.615850e-47 |
| Msa0242710 | Msa0280940 | 0.819498 | 1.125439e-52 | -8.615850e-47 |
| Msa0280930 | Msa0280940 | 0.961640 | 6.159491e-120 | -8.615850e-47 |
| Msa0280940 | Msa0280950 | 0.887351 | 1.539584e-72 | -8.615850e-47 |
| Msa0280940 | Msa0280990 | 0.800825 | 1.201901e-48 | -8.615850e-47 |
| Msa0280940 | Msa0320130 | 0.811538 | 6.658847e-51 | -8.615850e-47 |
| Msa0280940 | Msa0320140 | 0.800536 | 1.376151e-48 | -8.615850e-47 |
| Msa0280940 | Msa0320160 | 0.805249 | 1.462275e-49 | -8.615850e-47 |
| Msa0280940 | Msa0430320 | 0.816706 | 4.815254e-52 | -8.615850e-47 |
| Msa0280940 | Msa0466850 | 0.832337 | 1.001512e-55 | -8.615850e-47 |
| Msa0280940 | Msa0513670 | 0.833637 | 4.755667e-56 | -8.615850e-47 |
| Msa0280940 | Msa0629030 | 0.828666 | 7.917994e-55 | -8.615850e-47 |
| Msa0280940 | Msa0666580 | 0.820126 | 8.088210e-53 | -8.615850e-47 |
| Msa0280940 | Msa0716620 | 0.811337 | 7.363301e-51 | -8.615850e-47 |
| Msa0280940 | Msa0826370 | 0.808635 | 2.811199e-50 | -8.615850e-47 |
| Msa0280940 | Msa0837550 | 0.842595 | 2.348631e-58 | -8.615850e-47 |
| Msa0280940 | Msa1023430 | 0.807461 | 4.998185e-50 | -8.615850e-47 |
| Msa0280940 | Msa1055710 | -0.839072 | 1.971763e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280940 | MtrunA17_Chr2g0295021 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 2.56e-110 | 310 |
| Msa0280940 | MtrunA17_Chr2g0295001 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 2.56e-110 | 310 |
| Msa0280940 | MtrunA17_Chr2g0295051 | 87.898 | 157 | 19 | 0 | 1 | 157 | 1 | 157 | 1.38e-96 | 275 |
| Msa0280940 | MtrunA17_Chr2g0295064 | 85.350 | 157 | 23 | 0 | 1 | 157 | 68 | 224 | 1.14e-94 | 273 |
| Msa0280940 | MtrunA17_Chr2g0295041 | 84.076 | 157 | 25 | 0 | 1 | 157 | 1 | 157 | 4.80e-94 | 269 |
| Msa0280940 | MtrunA17_Chr4g0067951 | 73.248 | 157 | 42 | 0 | 1 | 157 | 1 | 157 | 3.20e-81 | 236 |
| Msa0280940 | MtrunA17_Chr6g0462311 | 71.975 | 157 | 44 | 0 | 1 | 157 | 1 | 157 | 6.58e-80 | 233 |
| Msa0280940 | MtrunA17_Chr2g0295141 | 65.605 | 157 | 54 | 0 | 1 | 157 | 1 | 157 | 1.85e-69 | 207 |
| Msa0280940 | MtrunA17_Chr6g0462291 | 70.714 | 140 | 41 | 0 | 1 | 140 | 1 | 140 | 9.20e-68 | 203 |
| Msa0280940 | MtrunA17_Chr2g0295091 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 4.12e-66 | 198 |
| Msa0280940 | MtrunA17_Chr2g0295104 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 2.68e-65 | 196 |
| Msa0280940 | MtrunA17_Chr2g0295124 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 6.13e-64 | 192 |
| Msa0280940 | MtrunA17_Chr2g0295081 | 60.510 | 157 | 62 | 0 | 1 | 157 | 1 | 157 | 3.94e-63 | 191 |
| Msa0280940 | MtrunA17_Chr2g0295211 | 41.026 | 156 | 91 | 1 | 1 | 155 | 1 | 156 | 8.93e-40 | 131 |
| Msa0280940 | MtrunA17_Chr4g0067841 | 40.385 | 156 | 92 | 1 | 1 | 155 | 1 | 156 | 1.85e-37 | 125 |
| Msa0280940 | MtrunA17_Chr4g0067921 | 44.720 | 161 | 82 | 5 | 1 | 157 | 1 | 158 | 4.17e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATAACCTTTGGAATA+AGG | 0.200219 | 2_3:-16084201 | None:intergenic |
| AACGAAAGTAAGTTTCTTGA+TGG | 0.287513 | 2_3:-16084269 | None:intergenic |
| AGCTATATGCTTTAGTAATC+AGG | 0.289844 | 2_3:-16085121 | None:intergenic |
| CCCTTGATTTCCTCTTCACT+TGG | 0.329042 | 2_3:-16085040 | None:intergenic |
| CTTCAACAATTTCAATACTT+TGG | 0.342783 | 2_3:-16084228 | None:intergenic |
| GAGATCTTCTCCACAGTGTC+TGG | 0.364866 | 2_3:-16084932 | None:intergenic |
| TATATCATGTGTGCTTGATT+TGG | 0.367917 | 2_3:+16085192 | Msa0280940:three_prime_UTR |
| AAGAAACTTACTTTCGTTGA+AGG | 0.370871 | 2_3:+16084274 | Msa0280940:CDS |
| GGCTCTTGAAGGTTACGTTT+TGG | 0.372797 | 2_3:+16085093 | Msa0280940:CDS |
| AGTAAGTTTCTTGATGGTTC+CGG | 0.383147 | 2_3:-16084263 | None:intergenic |
| CAATCTCACACTTGAGCAAA+AGG | 0.398682 | 2_3:-16085237 | None:intergenic |
| CAAAGTATTGAAATTGTTGA+AGG | 0.421501 | 2_3:+16084229 | Msa0280940:CDS |
| GCTTACAACTACAGCATAGT+TGG | 0.425478 | 2_3:+16084896 | Msa0280940:CDS |
| TGGATGGCATCAATAACCTT+TGG | 0.428619 | 2_3:-16084208 | None:intergenic |
| AACAATTTCAATACTTTGGA+TGG | 0.439896 | 2_3:-16084224 | None:intergenic |
| ATTGAAATTGTTGAAGGAAA+CGG | 0.445615 | 2_3:+16084235 | Msa0280940:CDS |
| TTTGAGTCTAAATTGTCTGC+AGG | 0.453113 | 2_3:+16084956 | Msa0280940:CDS |
| TTTGCAATGGATCCTCCATC+TGG | 0.453770 | 2_3:-16084980 | None:intergenic |
| ACATTAGTATTATATCATCA+TGG | 0.474977 | 2_3:+16084096 | Msa0280940:exon |
| CATGGGTGTATTCAACTTTG+AGG | 0.475033 | 2_3:+16084114 | Msa0280940:exon |
| AGAGCTTTGTAAAGTCTAGC+AGG | 0.480944 | 2_3:-16084160 | None:intergenic |
| GTATTATTATAATTTATTGA+AGG | 0.489862 | 2_3:-16085279 | None:intergenic |
| ACTGTGAAATACTTCACAAA+AGG | 0.498744 | 2_3:+16085007 | Msa0280940:CDS |
| ACCAAGTGAAGAGGAAATCA+AGG | 0.498836 | 2_3:+16085039 | Msa0280940:CDS |
| TTGCTTGCTTGCTTTATACA+TGG | 0.499671 | 2_3:+16085146 | Msa0280940:three_prime_UTR |
| TACAGCATAGTTGGAGGTGG+TGG | 0.504513 | 2_3:+16084905 | Msa0280940:CDS |
| TATTATTATAATTTATTGAA+GGG | 0.512183 | 2_3:-16085278 | None:intergenic |
| TTCTGATAACCTTATTCCAA+AGG | 0.526563 | 2_3:+16084192 | Msa0280940:CDS |
| AAAGTATGATTTGCACAAAG+TGG | 0.527363 | 2_3:+16084850 | Msa0280940:CDS |
| TTTCACAGTAAGCTTTGCAA+TGG | 0.527944 | 2_3:-16084993 | None:intergenic |
| GTTGAAGGAAACGGTGGCGC+CGG | 0.542615 | 2_3:+16084244 | Msa0280940:CDS |
| TGCAGACAATTTAGACTCAA+AGG | 0.553148 | 2_3:-16084954 | None:intergenic |
| AAATTGTCTGCAGGGCCAGA+TGG | 0.558648 | 2_3:+16084965 | Msa0280940:CDS |
| TATTATAATTTATTGAAGGG+AGG | 0.566695 | 2_3:-16085275 | None:intergenic |
| GGTGGCAAAGCTAGAGGTGA+TGG | 0.567538 | 2_3:+16085061 | Msa0280940:CDS |
| AAGGAAAGAGAGAATTACAT+TGG | 0.571088 | 2_3:-16085218 | None:intergenic |
| CATTAGTATTATATCATCAT+GGG | 0.574725 | 2_3:+16084097 | Msa0280940:exon |
| TTGAGTCTAAATTGTCTGCA+GGG | 0.579973 | 2_3:+16084957 | Msa0280940:CDS |
| TACAACTACAGCATAGTTGG+AGG | 0.596062 | 2_3:+16084899 | Msa0280940:CDS |
| TGATGCTGCACCAAGTGAAG+AGG | 0.603594 | 2_3:+16085030 | Msa0280940:CDS |
| TTGTCTGCAGGGCCAGATGG+AGG | 0.618761 | 2_3:+16084968 | Msa0280940:CDS |
| AACTACAGCATAGTTGGAGG+TGG | 0.623337 | 2_3:+16084902 | Msa0280940:CDS |
| ATCAAGGGTGGCAAAGCTAG+AGG | 0.623874 | 2_3:+16085055 | Msa0280940:CDS |
| AGCAGGAGCTACAATAGATG+TGG | 0.641681 | 2_3:-16084143 | None:intergenic |
| CCAAGTGAAGAGGAAATCAA+GGG | 0.664848 | 2_3:+16085040 | Msa0280940:CDS |
| GAAATTGTTGAAGGAAACGG+TGG | 0.666040 | 2_3:+16084238 | Msa0280940:CDS |
| AGTGAAGAGGAAATCAAGGG+TGG | 0.695634 | 2_3:+16085043 | Msa0280940:CDS |
| TGGTGGACTTCCAGACACTG+TGG | 0.725966 | 2_3:+16084922 | Msa0280940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATAATAAAAGAAAAG+AGG | - | chr2_3:16084658-16084677 | None:intergenic | 10.0% |
| !!! | TCTTTTCTTTTATTATATAT+TGG | + | chr2_3:16084657-16084676 | Msa0280940:intron | 10.0% |
| !! | GTATTATTATAATTTATTGA+AGG | - | chr2_3:16085282-16085301 | None:intergenic | 10.0% |
| !! | AATATATAATAAAAGAAAAG+AGG | - | chr2_3:16084658-16084677 | None:intergenic | 10.0% |
| !!! | TCTTTTCTTTTATTATATAT+TGG | + | chr2_3:16084657-16084676 | Msa0280940:intron | 10.0% |
| !! | GTATTATTATAATTTATTGA+AGG | - | chr2_3:16085282-16085301 | None:intergenic | 10.0% |
| !!! | GTGTTATTATATACATTTAA+TGG | + | chr2_3:16084523-16084542 | Msa0280940:intron | 15.0% |
| !!! | CTTTTAAAAAATAGTTTTTC+TGG | - | chr2_3:16084592-16084611 | None:intergenic | 15.0% |
| !!! | GTGTTATTATATACATTTAA+TGG | + | chr2_3:16084523-16084542 | Msa0280940:intron | 15.0% |
| !!! | CTTTTAAAAAATAGTTTTTC+TGG | - | chr2_3:16084592-16084611 | None:intergenic | 15.0% |
| !! | ACATTAGTATTATATCATCA+TGG | + | chr2_3:16084096-16084115 | Msa0280940:exon | 20.0% |
| !! | CATTAGTATTATATCATCAT+GGG | + | chr2_3:16084097-16084116 | Msa0280940:exon | 20.0% |
| !! | ATATATGTGAAAAATTGAAG+TGG | + | chr2_3:16084304-16084323 | Msa0280940:intron | 20.0% |
| !! | AAGATACATAACATAAATTG+TGG | + | chr2_3:16084453-16084472 | Msa0280940:intron | 20.0% |
| !! | TATTATAATTTATTGAAGGG+AGG | - | chr2_3:16085278-16085297 | None:intergenic | 20.0% |
| !! | CAAACTATTAAGAAGTTAAT+TGG | - | chr2_3:16084067-16084086 | None:intergenic | 20.0% |
| !! | ACATTAGTATTATATCATCA+TGG | + | chr2_3:16084096-16084115 | Msa0280940:exon | 20.0% |
| !! | CATTAGTATTATATCATCAT+GGG | + | chr2_3:16084097-16084116 | Msa0280940:exon | 20.0% |
| !! | ATATATGTGAAAAATTGAAG+TGG | + | chr2_3:16084304-16084323 | Msa0280940:intron | 20.0% |
| !! | AAGATACATAACATAAATTG+TGG | + | chr2_3:16084453-16084472 | Msa0280940:intron | 20.0% |
| !! | TATTATAATTTATTGAAGGG+AGG | - | chr2_3:16085278-16085297 | None:intergenic | 20.0% |
| ! | AACAATTTCAATACTTTGGA+TGG | - | chr2_3:16084227-16084246 | None:intergenic | 25.0% |
| ! | CTTCAACAATTTCAATACTT+TGG | - | chr2_3:16084231-16084250 | None:intergenic | 25.0% |
| !!! | CAAAGTATTGAAATTGTTGA+AGG | + | chr2_3:16084229-16084248 | Msa0280940:CDS | 25.0% |
| ! | ATTGAAATTGTTGAAGGAAA+CGG | + | chr2_3:16084235-16084254 | Msa0280940:CDS | 25.0% |
| ! | ATACATAACATAAATTGTGG+AGG | + | chr2_3:16084456-16084475 | Msa0280940:intron | 25.0% |
| ! | AACAAGAATCAAACATTTGA+TGG | - | chr2_3:16084618-16084637 | None:intergenic | 25.0% |
| ! | AACAATTTCAATACTTTGGA+TGG | - | chr2_3:16084227-16084246 | None:intergenic | 25.0% |
| ! | CTTCAACAATTTCAATACTT+TGG | - | chr2_3:16084231-16084250 | None:intergenic | 25.0% |
| !!! | CAAAGTATTGAAATTGTTGA+AGG | + | chr2_3:16084229-16084248 | Msa0280940:CDS | 25.0% |
| ! | ATTGAAATTGTTGAAGGAAA+CGG | + | chr2_3:16084235-16084254 | Msa0280940:CDS | 25.0% |
| ! | ATACATAACATAAATTGTGG+AGG | + | chr2_3:16084456-16084475 | Msa0280940:intron | 25.0% |
| ! | AACAAGAATCAAACATTTGA+TGG | - | chr2_3:16084618-16084637 | None:intergenic | 25.0% |
| TTCTGATAACCTTATTCCAA+AGG | + | chr2_3:16084192-16084211 | Msa0280940:CDS | 30.0% | |
| !! | CATCAATAACCTTTGGAATA+AGG | - | chr2_3:16084204-16084223 | None:intergenic | 30.0% |
| AACGAAAGTAAGTTTCTTGA+TGG | - | chr2_3:16084272-16084291 | None:intergenic | 30.0% | |
| AAGAAACTTACTTTCGTTGA+AGG | + | chr2_3:16084274-16084293 | Msa0280940:CDS | 30.0% | |
| TTCATGCAGTGAAAATTGTT+TGG | - | chr2_3:16084362-16084381 | None:intergenic | 30.0% | |
| !! | AATTAACCGTCGTTATTTTG+AGG | - | chr2_3:16084393-16084412 | None:intergenic | 30.0% |
| !!! | AACAGTTTTTTTTACACCGA+CGG | - | chr2_3:16084556-16084575 | None:intergenic | 30.0% |
| TTTCACAATCACTAACATGA+TGG | - | chr2_3:16084802-16084821 | None:intergenic | 30.0% | |
| ! | AAAGTATGATTTGCACAAAG+TGG | + | chr2_3:16084850-16084869 | Msa0280940:CDS | 30.0% |
| ACTGTGAAATACTTCACAAA+AGG | + | chr2_3:16085007-16085026 | Msa0280940:CDS | 30.0% | |
| AGCTATATGCTTTAGTAATC+AGG | - | chr2_3:16085124-16085143 | None:intergenic | 30.0% | |
| TATATCATGTGTGCTTGATT+TGG | + | chr2_3:16085192-16085211 | Msa0280940:three_prime_UTR | 30.0% | |
| AAGGAAAGAGAGAATTACAT+TGG | - | chr2_3:16085221-16085240 | None:intergenic | 30.0% | |
| TTCTGATAACCTTATTCCAA+AGG | + | chr2_3:16084192-16084211 | Msa0280940:CDS | 30.0% | |
| !! | CATCAATAACCTTTGGAATA+AGG | - | chr2_3:16084204-16084223 | None:intergenic | 30.0% |
| AACGAAAGTAAGTTTCTTGA+TGG | - | chr2_3:16084272-16084291 | None:intergenic | 30.0% | |
| AAGAAACTTACTTTCGTTGA+AGG | + | chr2_3:16084274-16084293 | Msa0280940:CDS | 30.0% | |
| TTCATGCAGTGAAAATTGTT+TGG | - | chr2_3:16084362-16084381 | None:intergenic | 30.0% | |
| !! | AATTAACCGTCGTTATTTTG+AGG | - | chr2_3:16084393-16084412 | None:intergenic | 30.0% |
| !!! | AACAGTTTTTTTTACACCGA+CGG | - | chr2_3:16084556-16084575 | None:intergenic | 30.0% |
| TTTCACAATCACTAACATGA+TGG | - | chr2_3:16084802-16084821 | None:intergenic | 30.0% | |
| ! | AAAGTATGATTTGCACAAAG+TGG | + | chr2_3:16084850-16084869 | Msa0280940:CDS | 30.0% |
| ACTGTGAAATACTTCACAAA+AGG | + | chr2_3:16085007-16085026 | Msa0280940:CDS | 30.0% | |
| AGCTATATGCTTTAGTAATC+AGG | - | chr2_3:16085124-16085143 | None:intergenic | 30.0% | |
| TATATCATGTGTGCTTGATT+TGG | + | chr2_3:16085192-16085211 | Msa0280940:three_prime_UTR | 30.0% | |
| AAGGAAAGAGAGAATTACAT+TGG | - | chr2_3:16085221-16085240 | None:intergenic | 30.0% | |
| ! | AGTAAGTTTCTTGATGGTTC+CGG | - | chr2_3:16084266-16084285 | None:intergenic | 35.0% |
| ATGTGAAAAATTGAAGTGGC+AGG | + | chr2_3:16084308-16084327 | Msa0280940:intron | 35.0% | |
| CCATATCCTCAAAATAACGA+CGG | + | chr2_3:16084384-16084403 | Msa0280940:intron | 35.0% | |
| ATTTAATGGAGATCTACCGT+CGG | + | chr2_3:16084537-16084556 | Msa0280940:intron | 35.0% | |
| GACATTCACTTTGTTCAACT+AGG | - | chr2_3:16084780-16084799 | None:intergenic | 35.0% | |
| GAAACGAATCAATTATGTGC+AGG | + | chr2_3:16084818-16084837 | Msa0280940:intron | 35.0% | |
| TGCAGACAATTTAGACTCAA+AGG | - | chr2_3:16084957-16084976 | None:intergenic | 35.0% | |
| TTTGAGTCTAAATTGTCTGC+AGG | + | chr2_3:16084956-16084975 | Msa0280940:CDS | 35.0% | |
| TTGAGTCTAAATTGTCTGCA+GGG | + | chr2_3:16084957-16084976 | Msa0280940:CDS | 35.0% | |
| TTTCACAGTAAGCTTTGCAA+TGG | - | chr2_3:16084996-16085015 | None:intergenic | 35.0% | |
| TTGCTTGCTTGCTTTATACA+TGG | + | chr2_3:16085146-16085165 | Msa0280940:three_prime_UTR | 35.0% | |
| ! | AGTAAGTTTCTTGATGGTTC+CGG | - | chr2_3:16084266-16084285 | None:intergenic | 35.0% |
| ATGTGAAAAATTGAAGTGGC+AGG | + | chr2_3:16084308-16084327 | Msa0280940:intron | 35.0% | |
| CCATATCCTCAAAATAACGA+CGG | + | chr2_3:16084384-16084403 | Msa0280940:intron | 35.0% | |
| ATTTAATGGAGATCTACCGT+CGG | + | chr2_3:16084537-16084556 | Msa0280940:intron | 35.0% | |
| GACATTCACTTTGTTCAACT+AGG | - | chr2_3:16084780-16084799 | None:intergenic | 35.0% | |
| GAAACGAATCAATTATGTGC+AGG | + | chr2_3:16084818-16084837 | Msa0280940:intron | 35.0% | |
| TGCAGACAATTTAGACTCAA+AGG | - | chr2_3:16084957-16084976 | None:intergenic | 35.0% | |
| TTTGAGTCTAAATTGTCTGC+AGG | + | chr2_3:16084956-16084975 | Msa0280940:CDS | 35.0% | |
| TTGAGTCTAAATTGTCTGCA+GGG | + | chr2_3:16084957-16084976 | Msa0280940:CDS | 35.0% | |
| TTTCACAGTAAGCTTTGCAA+TGG | - | chr2_3:16084996-16085015 | None:intergenic | 35.0% | |
| TTGCTTGCTTGCTTTATACA+TGG | + | chr2_3:16085146-16085165 | Msa0280940:three_prime_UTR | 35.0% | |
| CATGGGTGTATTCAACTTTG+AGG | + | chr2_3:16084114-16084133 | Msa0280940:exon | 40.0% | |
| ! | AGAGCTTTGTAAAGTCTAGC+AGG | - | chr2_3:16084163-16084182 | None:intergenic | 40.0% |
| TGGATGGCATCAATAACCTT+TGG | - | chr2_3:16084211-16084230 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_3:16084238-16084257 | Msa0280940:CDS | 40.0% | |
| !!! | CCGTCGTTATTTTGAGGATA+TGG | - | chr2_3:16084387-16084406 | None:intergenic | 40.0% |
| ACGAATCAATTATGTGCAGG+TGG | + | chr2_3:16084821-16084840 | Msa0280940:intron | 40.0% | |
| GCTTACAACTACAGCATAGT+TGG | + | chr2_3:16084896-16084915 | Msa0280940:CDS | 40.0% | |
| TACAACTACAGCATAGTTGG+AGG | + | chr2_3:16084899-16084918 | Msa0280940:CDS | 40.0% | |
| ACCAAGTGAAGAGGAAATCA+AGG | + | chr2_3:16085039-16085058 | Msa0280940:CDS | 40.0% | |
| CCAAGTGAAGAGGAAATCAA+GGG | + | chr2_3:16085040-16085059 | Msa0280940:CDS | 40.0% | |
| !! | TAGAGGTGATGGTCTTTTCA+AGG | + | chr2_3:16085072-16085091 | Msa0280940:CDS | 40.0% |
| CAATCTCACACTTGAGCAAA+AGG | - | chr2_3:16085240-16085259 | None:intergenic | 40.0% | |
| CATGGGTGTATTCAACTTTG+AGG | + | chr2_3:16084114-16084133 | Msa0280940:exon | 40.0% | |
| ! | AGAGCTTTGTAAAGTCTAGC+AGG | - | chr2_3:16084163-16084182 | None:intergenic | 40.0% |
| TGGATGGCATCAATAACCTT+TGG | - | chr2_3:16084211-16084230 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_3:16084238-16084257 | Msa0280940:CDS | 40.0% | |
| !!! | CCGTCGTTATTTTGAGGATA+TGG | - | chr2_3:16084387-16084406 | None:intergenic | 40.0% |
| ACGAATCAATTATGTGCAGG+TGG | + | chr2_3:16084821-16084840 | Msa0280940:intron | 40.0% | |
| GCTTACAACTACAGCATAGT+TGG | + | chr2_3:16084896-16084915 | Msa0280940:CDS | 40.0% | |
| TACAACTACAGCATAGTTGG+AGG | + | chr2_3:16084899-16084918 | Msa0280940:CDS | 40.0% | |
| ACCAAGTGAAGAGGAAATCA+AGG | + | chr2_3:16085039-16085058 | Msa0280940:CDS | 40.0% | |
| CCAAGTGAAGAGGAAATCAA+GGG | + | chr2_3:16085040-16085059 | Msa0280940:CDS | 40.0% | |
| !! | TAGAGGTGATGGTCTTTTCA+AGG | + | chr2_3:16085072-16085091 | Msa0280940:CDS | 40.0% |
| CAATCTCACACTTGAGCAAA+AGG | - | chr2_3:16085240-16085259 | None:intergenic | 40.0% | |
| AGCAGGAGCTACAATAGATG+TGG | - | chr2_3:16084146-16084165 | None:intergenic | 45.0% | |
| AACTACAGCATAGTTGGAGG+TGG | + | chr2_3:16084902-16084921 | Msa0280940:CDS | 45.0% | |
| TTTGCAATGGATCCTCCATC+TGG | - | chr2_3:16084983-16085002 | None:intergenic | 45.0% | |
| CCCTTGATTTCCTCTTCACT+TGG | - | chr2_3:16085043-16085062 | None:intergenic | 45.0% | |
| AGTGAAGAGGAAATCAAGGG+TGG | + | chr2_3:16085043-16085062 | Msa0280940:CDS | 45.0% | |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_3:16085082-16085101 | Msa0280940:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_3:16085093-16085112 | Msa0280940:CDS | 45.0% |
| AGCAGGAGCTACAATAGATG+TGG | - | chr2_3:16084146-16084165 | None:intergenic | 45.0% | |
| AACTACAGCATAGTTGGAGG+TGG | + | chr2_3:16084902-16084921 | Msa0280940:CDS | 45.0% | |
| TTTGCAATGGATCCTCCATC+TGG | - | chr2_3:16084983-16085002 | None:intergenic | 45.0% | |
| CCCTTGATTTCCTCTTCACT+TGG | - | chr2_3:16085043-16085062 | None:intergenic | 45.0% | |
| AGTGAAGAGGAAATCAAGGG+TGG | + | chr2_3:16085043-16085062 | Msa0280940:CDS | 45.0% | |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_3:16085082-16085101 | Msa0280940:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_3:16085093-16085112 | Msa0280940:CDS | 45.0% |
| !! | TATTATTATAATTTATTGAA+GGG | - | chr2_3:16085281-16085300 | None:intergenic | 5.0% |
| !! | TATTATTATAATTTATTGAA+GGG | - | chr2_3:16085281-16085300 | None:intergenic | 5.0% |
| TACAGCATAGTTGGAGGTGG+TGG | + | chr2_3:16084905-16084924 | Msa0280940:CDS | 50.0% | |
| GAGATCTTCTCCACAGTGTC+TGG | - | chr2_3:16084935-16084954 | None:intergenic | 50.0% | |
| AAATTGTCTGCAGGGCCAGA+TGG | + | chr2_3:16084965-16084984 | Msa0280940:CDS | 50.0% | |
| TGATGCTGCACCAAGTGAAG+AGG | + | chr2_3:16085030-16085049 | Msa0280940:CDS | 50.0% | |
| ATCAAGGGTGGCAAAGCTAG+AGG | + | chr2_3:16085055-16085074 | Msa0280940:CDS | 50.0% | |
| TACAGCATAGTTGGAGGTGG+TGG | + | chr2_3:16084905-16084924 | Msa0280940:CDS | 50.0% | |
| GAGATCTTCTCCACAGTGTC+TGG | - | chr2_3:16084935-16084954 | None:intergenic | 50.0% | |
| AAATTGTCTGCAGGGCCAGA+TGG | + | chr2_3:16084965-16084984 | Msa0280940:CDS | 50.0% | |
| TGATGCTGCACCAAGTGAAG+AGG | + | chr2_3:16085030-16085049 | Msa0280940:CDS | 50.0% | |
| ATCAAGGGTGGCAAAGCTAG+AGG | + | chr2_3:16085055-16085074 | Msa0280940:CDS | 50.0% | |
| !! | TGGTGGACTTCCAGACACTG+TGG | + | chr2_3:16084922-16084941 | Msa0280940:CDS | 55.0% |
| GGTGGCAAAGCTAGAGGTGA+TGG | + | chr2_3:16085061-16085080 | Msa0280940:CDS | 55.0% | |
| !! | TGGTGGACTTCCAGACACTG+TGG | + | chr2_3:16084922-16084941 | Msa0280940:CDS | 55.0% |
| GGTGGCAAAGCTAGAGGTGA+TGG | + | chr2_3:16085061-16085080 | Msa0280940:CDS | 55.0% | |
| GTTGAAGGAAACGGTGGCGC+CGG | + | chr2_3:16084244-16084263 | Msa0280940:CDS | 60.0% | |
| TTGTCTGCAGGGCCAGATGG+AGG | + | chr2_3:16084968-16084987 | Msa0280940:CDS | 60.0% | |
| GTTGAAGGAAACGGTGGCGC+CGG | + | chr2_3:16084244-16084263 | Msa0280940:CDS | 60.0% | |
| TTGTCTGCAGGGCCAGATGG+AGG | + | chr2_3:16084968-16084987 | Msa0280940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 16084065 | 16085312 | 16084065 | ID=Msa0280940;Name=Msa0280940 |
| chr2_3 | mRNA | 16084065 | 16085312 | 16084065 | ID=Msa0280940-mRNA-1;Parent=Msa0280940;Name=Msa0280940-mRNA-1;_AED=0.26;_eAED=0.26;_QI=50|1|1|1|1|1|2|180|157 |
| chr2_3 | exon | 16084065 | 16084295 | 16084065 | ID=Msa0280940-mRNA-1:exon:6635;Parent=Msa0280940-mRNA-1 |
| chr2_3 | exon | 16084840 | 16085312 | 16084840 | ID=Msa0280940-mRNA-1:exon:6636;Parent=Msa0280940-mRNA-1 |
| chr2_3 | five_prime_UTR | 16084065 | 16084114 | 16084065 | ID=Msa0280940-mRNA-1:five_prime_utr;Parent=Msa0280940-mRNA-1 |
| chr2_3 | CDS | 16084115 | 16084295 | 16084115 | ID=Msa0280940-mRNA-1:cds;Parent=Msa0280940-mRNA-1 |
| chr2_3 | CDS | 16084840 | 16085132 | 16084840 | ID=Msa0280940-mRNA-1:cds;Parent=Msa0280940-mRNA-1 |
| chr2_3 | three_prime_UTR | 16085133 | 16085312 | 16085133 | ID=Msa0280940-mRNA-1:three_prime_utr;Parent=Msa0280940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
