Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430320 | XP_003603098.1 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430320 | sp|Q8GXG1|ASPGB_ARATH | 84.308 | 325 | 48 | 1 | 1 | 322 | 1 | 325 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430320 | G7J705 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0430320 | 0.802079 | 6.649518e-49 | -8.615850e-47 |
| Msa0013040 | Msa0430320 | 0.800035 | 1.741015e-48 | -8.615850e-47 |
| Msa0027860 | Msa0430320 | 0.804697 | 1.907809e-49 | -8.615850e-47 |
| Msa0032770 | Msa0430320 | 0.804702 | 1.902606e-49 | -8.615850e-47 |
| Msa0040210 | Msa0430320 | 0.827743 | 1.321412e-54 | -8.615850e-47 |
| Msa0040360 | Msa0430320 | 0.807547 | 4.793358e-50 | -8.615850e-47 |
| Msa0046680 | Msa0430320 | 0.806851 | 6.728683e-50 | -8.615850e-47 |
| Msa0048950 | Msa0430320 | 0.820699 | 5.975180e-53 | -8.615850e-47 |
| Msa0059880 | Msa0430320 | 0.863709 | 2.050520e-64 | -8.615850e-47 |
| Msa0060380 | Msa0430320 | 0.804864 | 1.760369e-49 | -8.615850e-47 |
| Msa0064990 | Msa0430320 | 0.801831 | 7.477795e-49 | -8.615850e-47 |
| Msa0072940 | Msa0430320 | 0.817746 | 2.810034e-52 | -8.615850e-47 |
| Msa0073280 | Msa0430320 | 0.810696 | 1.013597e-50 | -8.615850e-47 |
| Msa0099090 | Msa0430320 | -0.816078 | 6.657284e-52 | -8.615850e-47 |
| Msa0114610 | Msa0430320 | 0.814022 | 1.903803e-51 | -8.615850e-47 |
| Msa0140270 | Msa0430320 | 0.935924 | 3.938555e-97 | -8.615850e-47 |
| Msa0142560 | Msa0430320 | 0.807247 | 5.549750e-50 | -8.615850e-47 |
| Msa0143940 | Msa0430320 | 0.800242 | 1.580032e-48 | -8.615850e-47 |
| Msa0144010 | Msa0430320 | 0.811398 | 7.141449e-51 | -8.615850e-47 |
| Msa0146210 | Msa0430320 | 0.812280 | 4.589159e-51 | -8.615850e-47 |
| Msa0148000 | Msa0430320 | -0.818558 | 1.841380e-52 | -8.615850e-47 |
| Msa0150910 | Msa0430320 | 0.854488 | 1.190221e-61 | -8.615850e-47 |
| Msa0155850 | Msa0430320 | 0.811878 | 5.616115e-51 | -8.615850e-47 |
| Msa0163340 | Msa0430320 | 0.814156 | 1.778419e-51 | -8.615850e-47 |
| Msa0166030 | Msa0430320 | 0.812214 | 4.743899e-51 | -8.615850e-47 |
| Msa0168010 | Msa0430320 | 0.801252 | 9.827349e-49 | -8.615850e-47 |
| Msa0172890 | Msa0430320 | 0.805853 | 1.092389e-49 | -8.615850e-47 |
| Msa0177260 | Msa0430320 | 0.803381 | 3.582715e-49 | -8.615850e-47 |
| Msa0179450 | Msa0430320 | 0.814861 | 1.241647e-51 | -8.615850e-47 |
| Msa0190670 | Msa0430320 | 0.856986 | 2.218867e-62 | -8.615850e-47 |
| Msa0195580 | Msa0430320 | 0.804704 | 1.900919e-49 | -8.615850e-47 |
| Msa0198140 | Msa0430320 | -0.802377 | 5.774809e-49 | -8.615850e-47 |
| Msa0200080 | Msa0430320 | 0.820711 | 5.938620e-53 | -8.615850e-47 |
| Msa0200090 | Msa0430320 | 0.821224 | 4.523514e-53 | -8.615850e-47 |
| Msa0212550 | Msa0430320 | 0.810277 | 1.248729e-50 | -8.615850e-47 |
| Msa0214800 | Msa0430320 | 0.810061 | 1.390223e-50 | -8.615850e-47 |
| Msa0231850 | Msa0430320 | 0.804014 | 2.646478e-49 | -8.615850e-47 |
| Msa0374040 | Msa0430320 | 0.805895 | 1.070418e-49 | -8.615850e-47 |
| Msa0380680 | Msa0430320 | 0.920970 | 6.506719e-88 | -8.615850e-47 |
| Msa0414480 | Msa0430320 | 0.811636 | 6.339180e-51 | -8.615850e-47 |
| Msa0420890 | Msa0430320 | 0.815601 | 8.505155e-52 | -8.615850e-47 |
| Msa0430320 | Msa0430460 | 0.958607 | 1.549196e-116 | -8.615850e-47 |
| Msa0430320 | Msa0466850 | 0.806589 | 7.643873e-50 | -8.615850e-47 |
| Msa0430320 | Msa0484410 | 0.838373 | 2.989529e-57 | -8.615850e-47 |
| Msa0430320 | Msa0490060 | 0.823714 | 1.193801e-53 | -8.615850e-47 |
| Msa0430320 | Msa0491760 | 0.802588 | 5.224333e-49 | -8.615850e-47 |
| Msa0430320 | Msa0513670 | 0.808304 | 3.307388e-50 | -8.615850e-47 |
| Msa0430320 | Msa0526840 | -0.805468 | 1.315618e-49 | -8.615850e-47 |
| Msa0430320 | Msa0537210 | 0.812133 | 4.941163e-51 | -8.615850e-47 |
| Msa0430320 | Msa0538050 | -0.804771 | 1.841067e-49 | -8.615850e-47 |
| Msa0430320 | Msa0538450 | 0.829580 | 4.754727e-55 | -8.615850e-47 |
| Msa0430320 | Msa0538520 | 0.820374 | 7.095118e-53 | -8.615850e-47 |
| Msa0430320 | Msa0584370 | 0.807632 | 4.596506e-50 | -8.615850e-47 |
| Msa0430320 | Msa0593600 | 0.806910 | 6.539630e-50 | -8.615850e-47 |
| Msa0430320 | Msa0594320 | 0.808870 | 2.504466e-50 | -8.615850e-47 |
| Msa0430320 | Msa0604890 | -0.803895 | 2.802358e-49 | -8.615850e-47 |
| Msa0430320 | Msa0605400 | 0.803578 | 3.259933e-49 | -8.615850e-47 |
| Msa0430320 | Msa0619300 | 0.820399 | 7.001517e-53 | -8.615850e-47 |
| Msa0430320 | Msa0633630 | 0.816375 | 5.712387e-52 | -8.615850e-47 |
| Msa0430320 | Msa0634290 | 0.801590 | 8.380889e-49 | -8.615850e-47 |
| Msa0430320 | Msa0643840 | 0.800933 | 1.141994e-48 | -8.615850e-47 |
| Msa0430320 | Msa0645380 | 0.810963 | 8.876406e-51 | -8.615850e-47 |
| Msa0430320 | Msa0646180 | -0.805144 | 1.538245e-49 | -8.615850e-47 |
| Msa0430320 | Msa0651820 | 0.822944 | 1.805854e-53 | -8.615850e-47 |
| Msa0430320 | Msa0652580 | 0.804609 | 1.989831e-49 | -8.615850e-47 |
| Msa0430320 | Msa0661040 | -0.805801 | 1.120150e-49 | -8.615850e-47 |
| Msa0430320 | Msa0666580 | 0.800024 | 1.749970e-48 | -8.615850e-47 |
| Msa0430320 | Msa0670360 | 0.817931 | 2.553006e-52 | -8.615850e-47 |
| Msa0430320 | Msa0678620 | 0.810731 | 9.962305e-51 | -8.615850e-47 |
| Msa0430320 | Msa0711240 | 0.815567 | 8.654803e-52 | -8.615850e-47 |
| Msa0430320 | Msa0711260 | 0.809340 | 1.986423e-50 | -8.615850e-47 |
| Msa0430320 | Msa0713290 | 0.829440 | 5.141365e-55 | -8.615850e-47 |
| Msa0430320 | Msa0727480 | 0.832692 | 8.175288e-56 | -8.615850e-47 |
| Msa0430320 | Msa0728210 | 0.801550 | 8.542356e-49 | -8.615850e-47 |
| Msa0430320 | Msa0734690 | 0.804627 | 1.972542e-49 | -8.615850e-47 |
| Msa0430320 | Msa0741170 | 0.820394 | 7.018559e-53 | -8.615850e-47 |
| Msa0430320 | Msa0741600 | -0.808577 | 2.892214e-50 | -8.615850e-47 |
| Msa0430320 | Msa0750790 | 0.821739 | 3.439382e-53 | -8.615850e-47 |
| Msa0430320 | Msa0751960 | 0.800001 | 1.768881e-48 | -8.615850e-47 |
| Msa0430320 | Msa0753500 | 0.834124 | 3.593047e-56 | -8.615850e-47 |
| Msa0430320 | Msa0754750 | 0.822107 | 2.826563e-53 | -8.615850e-47 |
| Msa0430320 | Msa0755010 | 0.818851 | 1.579317e-52 | -8.615850e-47 |
| Msa0430320 | Msa0761420 | 0.803852 | 2.859893e-49 | -8.615850e-47 |
| Msa0430320 | Msa0768670 | 0.820838 | 5.550921e-53 | -8.615850e-47 |
| Msa0430320 | Msa0768720 | 0.815008 | 1.151922e-51 | -8.615850e-47 |
| Msa0430320 | Msa0777070 | 0.810745 | 9.895648e-51 | -8.615850e-47 |
| Msa0430320 | Msa0779830 | -0.800897 | 1.161823e-48 | -8.615850e-47 |
| Msa0430320 | Msa0789220 | 0.804297 | 2.310891e-49 | -8.615850e-47 |
| Msa0430320 | Msa0789410 | 0.801532 | 8.613333e-49 | -8.615850e-47 |
| Msa0430320 | Msa0791300 | 0.805786 | 1.128515e-49 | -8.615850e-47 |
| Msa0430320 | Msa0794200 | 0.808315 | 3.289350e-50 | -8.615850e-47 |
| Msa0430320 | Msa0794240 | 0.849880 | 2.434454e-60 | -8.615850e-47 |
| Msa0430320 | Msa0795210 | 0.838422 | 2.902432e-57 | -8.615850e-47 |
| Msa0430320 | Msa0814160 | 0.817369 | 3.417925e-52 | -8.615850e-47 |
| Msa0430320 | Msa0819150 | 0.802656 | 5.058517e-49 | -8.615850e-47 |
| Msa0430320 | Msa0822410 | 0.800631 | 1.316571e-48 | -8.615850e-47 |
| Msa0430320 | Msa0826360 | 0.807657 | 4.541098e-50 | -8.615850e-47 |
| Msa0430320 | Msa0826370 | 0.804727 | 1.880291e-49 | -8.615850e-47 |
| Msa0430320 | Msa0832750 | 0.819496 | 1.126412e-52 | -8.615850e-47 |
| Msa0430320 | Msa0854160 | 0.806261 | 8.965567e-50 | -8.615850e-47 |
| Msa0430320 | Msa0854840 | 0.819865 | 9.276937e-53 | -8.615850e-47 |
| Msa0430320 | Msa0861730 | 0.821155 | 4.692140e-53 | -8.615850e-47 |
| Msa0430320 | Msa0861820 | 0.827016 | 1.974384e-54 | -8.615850e-47 |
| Msa0430320 | Msa0869660 | 0.827049 | 1.938483e-54 | -8.615850e-47 |
| Msa0430320 | Msa0870220 | -0.810929 | 9.028741e-51 | -8.615850e-47 |
| Msa0430320 | Msa0876600 | 0.805304 | 1.423782e-49 | -8.615850e-47 |
| Msa0430320 | Msa0883640 | 0.816732 | 4.751366e-52 | -8.615850e-47 |
| Msa0430320 | Msa0896920 | 0.811153 | 8.073960e-51 | -8.615850e-47 |
| Msa0430320 | Msa0902340 | 0.818507 | 1.891138e-52 | -8.615850e-47 |
| Msa0430320 | Msa0903460 | -0.804093 | 2.549308e-49 | -8.615850e-47 |
| Msa0430320 | Msa0910830 | 0.842537 | 2.434376e-58 | -8.615850e-47 |
| Msa0430320 | Msa0913550 | 0.811449 | 6.963589e-51 | -8.615850e-47 |
| Msa0430320 | Msa0933610 | 0.800930 | 1.143959e-48 | -8.615850e-47 |
| Msa0430320 | Msa0935930 | -0.804362 | 2.240173e-49 | -8.615850e-47 |
| Msa0430320 | Msa0940780 | 0.806402 | 8.369971e-50 | -8.615850e-47 |
| Msa0430320 | Msa0951150 | 0.829012 | 6.532036e-55 | -8.615850e-47 |
| Msa0430320 | Msa0960090 | 0.820436 | 6.865663e-53 | -8.615850e-47 |
| Msa0430320 | Msa0972370 | 0.804663 | 1.939341e-49 | -8.615850e-47 |
| Msa0430320 | Msa0982560 | 0.842548 | 2.417570e-58 | -8.615850e-47 |
| Msa0430320 | Msa0982900 | 0.803295 | 3.731296e-49 | -8.615850e-47 |
| Msa0430320 | Msa0985700 | 0.817009 | 4.117132e-52 | -8.615850e-47 |
| Msa0430320 | Msa0987640 | 0.827549 | 1.471078e-54 | -8.615850e-47 |
| Msa0430320 | Msa0993450 | 0.805473 | 1.312232e-49 | -8.615850e-47 |
| Msa0430320 | Msa1006170 | 0.834708 | 2.563460e-56 | -8.615850e-47 |
| Msa0430320 | Msa1006220 | 0.811970 | 5.362509e-51 | -8.615850e-47 |
| Msa0430320 | Msa1018210 | -0.811910 | 5.527320e-51 | -8.615850e-47 |
| Msa0430320 | Msa1021620 | 0.833624 | 4.791961e-56 | -8.615850e-47 |
| Msa0430320 | Msa1024350 | 0.828122 | 1.071314e-54 | -8.615850e-47 |
| Msa0430320 | Msa1026050 | 0.823163 | 1.605536e-53 | -8.615850e-47 |
| Msa0430320 | Msa1041260 | 0.805631 | 1.216042e-49 | -8.615850e-47 |
| Msa0430320 | Msa1055710 | -0.809504 | 1.831129e-50 | -8.615850e-47 |
| Msa0430320 | Msa1087380 | 0.826290 | 2.941953e-54 | -8.615850e-47 |
| Msa0430320 | Msa1109880 | 0.853462 | 2.351629e-61 | -8.615850e-47 |
| Msa0430320 | Msa1109890 | 0.829713 | 4.414111e-55 | -8.615850e-47 |
| Msa0430320 | Msa1145930 | -0.800292 | 1.543508e-48 | -8.615850e-47 |
| Msa0430320 | Msa1146980 | 0.801223 | 9.965635e-49 | -8.615850e-47 |
| Msa0430320 | Msa1156240 | 0.806335 | 8.645936e-50 | -8.615850e-47 |
| Msa0430320 | Msa1157200 | 0.800378 | 1.482379e-48 | -8.615850e-47 |
| Msa0430320 | Msa1165660 | 0.812354 | 4.422063e-51 | -8.615850e-47 |
| Msa0430320 | Msa1170320 | 0.803141 | 4.015383e-49 | -8.615850e-47 |
| Msa0430320 | Msa1170340 | 0.801264 | 9.772020e-49 | -8.615850e-47 |
| Msa0430320 | Msa1179340 | 0.813349 | 2.678018e-51 | -8.615850e-47 |
| Msa0430320 | Msa1186340 | 0.810042 | 1.402834e-50 | -8.615850e-47 |
| Msa0430320 | Msa1186670 | 0.804612 | 1.986686e-49 | -8.615850e-47 |
| Msa0430320 | Msa1211130 | 0.803866 | 2.841551e-49 | -8.615850e-47 |
| Msa0430320 | Msa1214960 | 0.828311 | 9.646061e-55 | -8.615850e-47 |
| Msa0430320 | Msa1226210 | 0.801876 | 7.321755e-49 | -8.615850e-47 |
| Msa0430320 | Msa1233640 | 0.808949 | 2.408104e-50 | -8.615850e-47 |
| Msa0430320 | Msa1267990 | 0.802352 | 5.843533e-49 | -8.615850e-47 |
| Msa0430320 | Msa1275220 | 0.824371 | 8.370821e-54 | -8.615850e-47 |
| Msa0430320 | Msa1281300 | 0.817635 | 2.976810e-52 | -8.615850e-47 |
| Msa0430320 | Msa1300610 | 0.810809 | 9.582078e-51 | -8.615850e-47 |
| Msa0430320 | Msa1313720 | 0.800118 | 1.674721e-48 | -8.615850e-47 |
| Msa0430320 | Msa1321970 | 0.803374 | 3.593717e-49 | -8.615850e-47 |
| Msa0430320 | Msa1323030 | 0.820991 | 5.118732e-53 | -8.615850e-47 |
| Msa0430320 | Msa1323120 | 0.827702 | 1.351866e-54 | -8.615850e-47 |
| Msa0430320 | Msa1344930 | 0.812837 | 3.467630e-51 | -8.615850e-47 |
| Msa0430320 | Msa1349420 | 0.808656 | 2.782031e-50 | -8.615850e-47 |
| Msa0430320 | Msa1357860 | 0.807603 | 4.663541e-50 | -8.615850e-47 |
| Msa0430320 | Msa1359880 | -0.802116 | 6.534004e-49 | -8.615850e-47 |
| Msa0430320 | Msa1366470 | 0.801506 | 8.721225e-49 | -8.615850e-47 |
| Msa0430320 | Msa1366480 | 0.804498 | 2.098914e-49 | -8.615850e-47 |
| Msa0430320 | Msa1373560 | 0.823839 | 1.115956e-53 | -8.615850e-47 |
| Msa0430320 | Msa1373990 | 0.811409 | 7.103967e-51 | -8.615850e-47 |
| Msa0430320 | Msa1376070 | 0.813765 | 2.168250e-51 | -8.615850e-47 |
| Msa0430320 | Msa1377520 | 0.801909 | 7.207001e-49 | -8.615850e-47 |
| Msa0430320 | Msa1407670 | 0.807400 | 5.150336e-50 | -8.615850e-47 |
| Msa0430320 | Msa1414340 | 0.802723 | 4.900878e-49 | -8.615850e-47 |
| Msa0430320 | Msa1414560 | -0.803191 | 3.922218e-49 | -8.615850e-47 |
| Msa0430320 | Msa1419390 | 0.800908 | 1.155976e-48 | -8.615850e-47 |
| Msa0430320 | Msa1421120 | 0.801972 | 6.997582e-49 | -8.615850e-47 |
| Msa0430320 | Msa1445900 | 0.804530 | 2.067280e-49 | -8.615850e-47 |
| Msa0430320 | Msa1449770 | 0.811236 | 7.743948e-51 | -8.615850e-47 |
| Msa0430320 | Msa1455760 | 0.813384 | 2.630945e-51 | -8.615850e-47 |
| Msa0430320 | Msa1459610 | 0.824153 | 9.417551e-54 | -8.615850e-47 |
| Msa0430320 | Msa1459930 | 0.801754 | 7.755268e-49 | -8.615850e-47 |
| Msa0242720 | Msa0430320 | 0.814960 | 1.180273e-51 | -8.615850e-47 |
| Msa0280930 | Msa0430320 | 0.805686 | 1.183970e-49 | -8.615850e-47 |
| Msa0280940 | Msa0430320 | 0.816706 | 4.815254e-52 | -8.615850e-47 |
| Msa0294200 | Msa0430320 | 0.806083 | 9.770460e-50 | -8.615850e-47 |
| Msa0303650 | Msa0430320 | 0.800443 | 1.437637e-48 | -8.615850e-47 |
| Msa0319830 | Msa0430320 | 0.809764 | 1.610652e-50 | -8.615850e-47 |
| Msa0347320 | Msa0430320 | 0.800888 | 1.166668e-48 | -8.615850e-47 |
| Msa0349910 | Msa0430320 | 0.801742 | 7.798684e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430320 | MtrunA17_Chr3g0134271 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 642 |
| Msa0430320 | MtrunA17_Chr1g0198911 | 87.267 | 322 | 39 | 1 | 1 | 322 | 1 | 320 | 0.0 | 580 |
| Msa0430320 | MtrunA17_Chr1g0152931 | 86.769 | 325 | 40 | 2 | 1 | 322 | 1 | 325 | 0.0 | 576 |
| Msa0430320 | MtrunA17_Chr4g0061721 | 59.006 | 322 | 124 | 2 | 3 | 321 | 2 | 318 | 7.34e-131 | 375 |
| Msa0430320 | MtrunA17_Chr4g0061731 | 58.075 | 322 | 128 | 3 | 3 | 321 | 2 | 319 | 3.85e-128 | 369 |
| Msa0430320 | MtrunA17_Chr8g0349621 | 28.990 | 307 | 171 | 7 | 6 | 277 | 23 | 317 | 1.93e-25 | 105 |
| Msa0430320 | MtrunA17_Chr3g0079001 | 28.571 | 252 | 157 | 6 | 67 | 297 | 77 | 326 | 1.06e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430320 | AT3G16150.1 | 84.308 | 325 | 48 | 1 | 1 | 322 | 1 | 325 | 0.0 | 566 |
| Msa0430320 | AT5G08100.1 | 58.025 | 324 | 121 | 3 | 1 | 321 | 1 | 312 | 5.64e-128 | 368 |
| Msa0430320 | AT5G08100.2 | 57.377 | 244 | 90 | 2 | 80 | 321 | 1 | 232 | 3.96e-94 | 279 |
| Msa0430320 | AT4G00590.1 | 27.019 | 322 | 174 | 8 | 6 | 282 | 15 | 320 | 2.61e-20 | 91.3 |
| Msa0430320 | AT5G61540.1 | 28.947 | 266 | 150 | 9 | 67 | 300 | 80 | 338 | 1.01e-17 | 83.2 |
| Msa0430320 | AT4G00590.2 | 26.821 | 302 | 185 | 7 | 6 | 282 | 15 | 305 | 1.29e-16 | 80.1 |
| Msa0430320 | AT5G61540.3 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 6.27e-15 | 73.9 |
| Msa0430320 | AT5G61540.2 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 6.27e-15 | 73.9 |
Find 91 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATGGAGGTTGGAATT+TGG | 0.172718 | 3_2:+82091786 | Msa0430320:CDS |
| GTTCATGGAGGTTGGAATTT+GGG | 0.266618 | 3_2:+82091787 | Msa0430320:CDS |
| TCAATTGTAATGGAATGTTT+AGG | 0.266625 | 3_2:+82091744 | Msa0430320:CDS |
| TCTTATTGCTGTGTCTAATA+AGG | 0.277779 | 3_2:+82091703 | Msa0430320:CDS |
| CAATTGTAATGGAATGTTTA+GGG | 0.287602 | 3_2:+82091745 | Msa0430320:CDS |
| AATAAGGGTGAAGTGGCTTA+TGG | 0.294879 | 3_2:+82091719 | Msa0430320:CDS |
| CGTCTTGATGAAGGGTTTGC+TGG | 0.320904 | 3_2:+82091680 | Msa0430320:CDS |
| GGTTGGGCTATTGCTGTTCA+TGG | 0.339677 | 3_2:+82090429 | Msa0430320:CDS |
| TGTGCTGCTGCAACCTCAAC+TGG | 0.368919 | 3_2:+82091455 | Msa0430320:CDS |
| TGACGGTGTGTTGGAAGATT+AGG | 0.377061 | 3_2:-82090468 | None:intergenic |
| AAAGGAAGCTAATACAATAT+TGG | 0.379155 | 3_2:+82091197 | Msa0430320:CDS |
| AGAAGATGTGGTGCTGTATC+TGG | 0.390803 | 3_2:+82090913 | Msa0430320:CDS |
| TTTCAGCATACCAACATTAT+CGG | 0.395803 | 3_2:-82091169 | None:intergenic |
| AGGGGATGTGCAACTGAGAA+TGG | 0.403815 | 3_2:+82091764 | Msa0430320:CDS |
| ATAAGGGTGAAGTGGCTTAT+GGG | 0.407004 | 3_2:+82091720 | Msa0430320:CDS |
| ATTGCTGTTCATGGCGGCGC+TGG | 0.414973 | 3_2:+82090438 | Msa0430320:CDS |
| AGCAAAAGGAACGGTGGAAA+TGG | 0.416209 | 3_2:+82090864 | Msa0430320:CDS |
| ACATTCGGTAAGAAGCTGTT+TGG | 0.418583 | 3_2:-82090499 | None:intergenic |
| GCTTATGGGTTCAATTGTAA+TGG | 0.420402 | 3_2:+82091734 | Msa0430320:CDS |
| CTTACCGAATGTCTCAATCT+TGG | 0.425909 | 3_2:+82090510 | Msa0430320:CDS |
| CATTCTTACCTCGCCTTCTC+CGG | 0.431764 | 3_2:+82090994 | Msa0430320:CDS |
| CTTATTGCTGTGTCTAATAA+GGG | 0.432612 | 3_2:+82091704 | Msa0430320:CDS |
| ACAAGACGAGCAAGAGAGAT+TGG | 0.433669 | 3_2:-82090955 | None:intergenic |
| AACAAAATGAGTGGTCGAAT+TGG | 0.448923 | 3_2:+82091488 | Msa0430320:CDS |
| TTCAGCATACCAACATTATC+GGG | 0.458771 | 3_2:-82091168 | None:intergenic |
| GGATCTGCTCTGACAGCAAA+AGG | 0.463031 | 3_2:+82090850 | Msa0430320:CDS |
| ATTAAGCATCGTCTTGATGA+AGG | 0.463221 | 3_2:+82091671 | Msa0430320:CDS |
| AGAAGAATTTGCTAGGGAAC+AGG | 0.465537 | 3_2:+82091020 | Msa0430320:CDS |
| GACGTCGAGTGCGGAAGCAT+TGG | 0.472505 | 3_2:-82090550 | None:intergenic |
| ATTGGTGATTCACCTCTCAT+AGG | 0.473172 | 3_2:+82091506 | Msa0430320:CDS |
| TGCAACTGAGAATGGGTTCA+TGG | 0.477091 | 3_2:+82091772 | Msa0430320:CDS |
| ACCACACATCCGACGGTCTC+CGG | 0.480495 | 3_2:-82091413 | None:intergenic |
| TAATCTTCCAACACACCGTC+AGG | 0.481716 | 3_2:+82090470 | Msa0430320:CDS |
| CTCTCTTGCTCGTCTTGTCA+TGG | 0.483008 | 3_2:+82090960 | Msa0430320:CDS |
| ACGTGAAGTGGCTGCAGTTA+TGG | 0.491646 | 3_2:+82091607 | Msa0430320:CDS |
| GTTCATCAGCCCTCCAGTTG+AGG | 0.494907 | 3_2:-82091468 | None:intergenic |
| AAATTCTTCTGCACCGGAGA+AGG | 0.500532 | 3_2:-82091007 | None:intergenic |
| GAGAATGGGTTCATGGAGGT+TGG | 0.502391 | 3_2:+82091779 | Msa0430320:CDS |
| GATTCACCTCTCATAGGTGC+TGG | 0.502766 | 3_2:+82091512 | Msa0430320:CDS |
| GATAGTCCAGTGAAAATGAA+TGG | 0.507847 | 3_2:+82091368 | Msa0430320:CDS |
| CCTAGCAAATTCTTCTGCAC+CGG | 0.509592 | 3_2:-82091013 | None:intergenic |
| GCTTCTTCCTGACGGTGTGT+TGG | 0.511337 | 3_2:-82090477 | None:intergenic |
| GGGGATGTGCAACTGAGAAT+GGG | 0.515436 | 3_2:+82091765 | Msa0430320:CDS |
| GGAAATGGAGGCTAGTATCA+TGG | 0.537266 | 3_2:+82090879 | Msa0430320:CDS |
| GATACCAAGATTGAGACATT+CGG | 0.538052 | 3_2:-82090514 | None:intergenic |
| CCGGTGCAGAAGAATTTGCT+AGG | 0.539891 | 3_2:+82091013 | Msa0430320:CDS |
| GACCGTCGGATGTGTGGTGG+TGG | 0.541481 | 3_2:+82091418 | Msa0430320:CDS |
| GTTATGGAGTACAAAGGCTA+TGG | 0.546040 | 3_2:+82091623 | Msa0430320:CDS |
| GTGTGTGGAGTTTCATGCAC+TGG | 0.546331 | 3_2:+82091551 | Msa0430320:CDS |
| CTGCTGCAACCTCAACTGGA+GGG | 0.550431 | 3_2:+82091459 | Msa0430320:CDS |
| GCTGTTTGGCTTCTTCCTGA+CGG | 0.552502 | 3_2:-82090485 | None:intergenic |
| TGGCACTCTTGCACGTGAAG+TGG | 0.556232 | 3_2:+82091595 | Msa0430320:CDS |
| TTCATCACTCCCGATAATGT+TGG | 0.557667 | 3_2:+82091159 | Msa0430320:CDS |
| AATTGTAATGGAATGTTTAG+GGG | 0.558475 | 3_2:+82091746 | Msa0430320:CDS |
| GAGAAGGCGAGGTAAGAATG+AGG | 0.562126 | 3_2:-82090991 | None:intergenic |
| GTTTGATTATCGAATTCCAA+CGG | 0.581762 | 3_2:+82091328 | Msa0430320:intron |
| GCCGGAGACCGTCGGATGTG+TGG | 0.582295 | 3_2:+82091412 | Msa0430320:CDS |
| GAAGGTGAAGCTATCATTCG+TGG | 0.583136 | 3_2:+82091575 | Msa0430320:CDS |
| TGTTCATGGCGGCGCTGGTG+TGG | 0.585081 | 3_2:+82090443 | Msa0430320:CDS |
| GCCGATGAGCATTTACGCGC+CGG | 0.592527 | 3_2:+82091394 | Msa0430320:CDS |
| AGAAGGCGAGGTAAGAATGA+GGG | 0.593655 | 3_2:-82090990 | None:intergenic |
| CCACGGCCAGAATTGAAAAG+TGG | 0.595287 | 3_2:-82090829 | None:intergenic |
| CTATGGACTTCAACAAGCAG+TGG | 0.595577 | 3_2:+82091640 | Msa0430320:CDS |
| TTAAGCATCGTCTTGATGAA+GGG | 0.596066 | 3_2:+82091672 | Msa0430320:CDS |
| TTGCTGTCAGAGCAGATCCA+CGG | 0.605965 | 3_2:-82090846 | None:intergenic |
| GCTGCTGCAACCTCAACTGG+AGG | 0.606206 | 3_2:+82091458 | Msa0430320:CDS |
| TGCTCTGACAGCAAAAGGAA+CGG | 0.607232 | 3_2:+82090855 | Msa0430320:CDS |
| GGAGTTTCATGCACTGGTGA+AGG | 0.610329 | 3_2:+82091557 | Msa0430320:CDS |
| TTTCTAGGGCGTGGAGACTG+AGG | 0.612061 | 3_2:+82091125 | Msa0430320:intron |
| GTCCACCACCACACATCCGA+CGG | 0.619811 | 3_2:-82091420 | None:intergenic |
| TGTGTCTAATAAGGGTGAAG+TGG | 0.621047 | 3_2:+82091712 | Msa0430320:CDS |
| AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 3_2:+82090867 | Msa0430320:CDS |
| CGGTGCAGAAGAATTTGCTA+GGG | 0.622722 | 3_2:+82091014 | Msa0430320:CDS |
| GAAGGCGAGGTAAGAATGAG+GGG | 0.630197 | 3_2:-82090989 | None:intergenic |
| ATTTACGCGCCGGAGACCGT+CGG | 0.633728 | 3_2:+82091404 | Msa0430320:CDS |
| ATGGAGGCTAGTATCATGGA+TGG | 0.635651 | 3_2:+82090883 | Msa0430320:CDS |
| TCCGGCGCGTAAATGCTCAT+CGG | 0.640097 | 3_2:-82091395 | None:intergenic |
| AAGTTCGACGACGTCGAGTG+CGG | 0.645430 | 3_2:-82090559 | None:intergenic |
| CGAGTGCGGAAGCATTGGAT+CGG | 0.648150 | 3_2:-82090545 | None:intergenic |
| TAAGTTCCAGCACCTATGAG+AGG | 0.650295 | 3_2:-82091518 | None:intergenic |
| CTTCTGCACCGGAGAAGGCG+AGG | 0.656386 | 3_2:-82091002 | None:intergenic |
| GGAGACCGTCGGATGTGTGG+TGG | 0.674288 | 3_2:+82091415 | Msa0430320:CDS |
| GATGGTAACAAGAGAAGATG+TGG | 0.682088 | 3_2:+82090901 | Msa0430320:CDS |
| TGGTATGCTGAAACTCGCAA+AGG | 0.682548 | 3_2:+82091179 | Msa0430320:CDS |
| TGGGCTATTGCTGTTCATGG+CGG | 0.684758 | 3_2:+82090432 | Msa0430320:CDS |
| ACTTATGCATGTGATGTGTG+TGG | 0.685580 | 3_2:+82091536 | Msa0430320:CDS |
| GCTGCAGTTATGGAGTACAA+AGG | 0.689411 | 3_2:+82091617 | Msa0430320:CDS |
| TCTGACAGCAAAAGGAACGG+TGG | 0.711989 | 3_2:+82090858 | Msa0430320:CDS |
| TGTGTGGTGGTGGACAGTCA+AGG | 0.729603 | 3_2:+82091428 | Msa0430320:CDS |
| GGGCTGATGAACAAAATGAG+TGG | 0.736737 | 3_2:+82091479 | Msa0430320:CDS |
| AACTGAGAATGGGTTCATGG+AGG | 0.788867 | 3_2:+82091775 | Msa0430320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATATTATTGTCATTA+TGG | - | chr3_2:82090716-82090735 | None:intergenic | 10.0% |
| !! | AATATTTATAGATCAAAAAT+TGG | - | chr3_2:82091073-82091092 | None:intergenic | 10.0% |
| !! | AAATTATATTATTGTCATTA+TGG | - | chr3_2:82090716-82090735 | None:intergenic | 10.0% |
| !! | AATATTTATAGATCAAAAAT+TGG | - | chr3_2:82091073-82091092 | None:intergenic | 10.0% |
| !! | GATTATGAATGATATAAATT+AGG | - | chr3_2:82090630-82090649 | None:intergenic | 15.0% |
| !! | ATTTATATCATTCATAATCA+TGG | + | chr3_2:82090631-82090650 | Msa0430320:intron | 15.0% |
| !! | TTTATATCATTCATAATCAT+GGG | + | chr3_2:82090632-82090651 | Msa0430320:intron | 15.0% |
| !!! | GTTTTTAATCAAAAGATATT+TGG | + | chr3_2:82091094-82091113 | Msa0430320:intron | 15.0% |
| !! | GATTATGAATGATATAAATT+AGG | - | chr3_2:82090630-82090649 | None:intergenic | 15.0% |
| !! | ATTTATATCATTCATAATCA+TGG | + | chr3_2:82090631-82090650 | Msa0430320:intron | 15.0% |
| !! | TTTATATCATTCATAATCAT+GGG | + | chr3_2:82090632-82090651 | Msa0430320:intron | 15.0% |
| !!! | GTTTTTAATCAAAAGATATT+TGG | + | chr3_2:82091094-82091113 | Msa0430320:intron | 15.0% |
| !! | AAATTAGGTTAGGTTTATTA+CGG | - | chr3_2:82090615-82090634 | None:intergenic | 20.0% |
| !! | TGAATGATATAAATTAGGTT+AGG | - | chr3_2:82090625-82090644 | None:intergenic | 20.0% |
| !!! | TTTCTGTTTTTGTTGATTTT+AGG | + | chr3_2:82090769-82090788 | Msa0430320:intron | 20.0% |
| !!! | TTCTGTTTTTGTTGATTTTA+GGG | + | chr3_2:82090770-82090789 | Msa0430320:intron | 20.0% |
| !! | TTATTAATGAATGTGTTTGA+TGG | + | chr3_2:82091294-82091313 | Msa0430320:intron | 20.0% |
| !! | AAATTAGGTTAGGTTTATTA+CGG | - | chr3_2:82090615-82090634 | None:intergenic | 20.0% |
| !! | TGAATGATATAAATTAGGTT+AGG | - | chr3_2:82090625-82090644 | None:intergenic | 20.0% |
| !!! | TTTCTGTTTTTGTTGATTTT+AGG | + | chr3_2:82090769-82090788 | Msa0430320:intron | 20.0% |
| !!! | TTCTGTTTTTGTTGATTTTA+GGG | + | chr3_2:82090770-82090789 | Msa0430320:intron | 20.0% |
| !! | TTATTAATGAATGTGTTTGA+TGG | + | chr3_2:82091294-82091313 | Msa0430320:intron | 20.0% |
| ! | AACTATAGATTCGAAAATAC+CGG | - | chr3_2:82090745-82090764 | None:intergenic | 25.0% |
| !!! | TTTAGGGTTCTTTTTTTGAT+AGG | + | chr3_2:82090786-82090805 | Msa0430320:intron | 25.0% |
| !!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr3_2:82091110-82091129 | Msa0430320:intron | 25.0% |
| !!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr3_2:82091111-82091130 | Msa0430320:intron | 25.0% |
| ! | AAAGGAAGCTAATACAATAT+TGG | + | chr3_2:82091197-82091216 | Msa0430320:CDS | 25.0% |
| ! | TCACTTGTGTAATTAAAATG+TGG | + | chr3_2:82091256-82091275 | Msa0430320:intron | 25.0% |
| !! | TCAATTGTAATGGAATGTTT+AGG | + | chr3_2:82091744-82091763 | Msa0430320:CDS | 25.0% |
| !! | CAATTGTAATGGAATGTTTA+GGG | + | chr3_2:82091745-82091764 | Msa0430320:CDS | 25.0% |
| !! | AATTGTAATGGAATGTTTAG+GGG | + | chr3_2:82091746-82091765 | Msa0430320:CDS | 25.0% |
| ! | AACTATAGATTCGAAAATAC+CGG | - | chr3_2:82090745-82090764 | None:intergenic | 25.0% |
| !!! | TTTAGGGTTCTTTTTTTGAT+AGG | + | chr3_2:82090786-82090805 | Msa0430320:intron | 25.0% |
| !!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr3_2:82091110-82091129 | Msa0430320:intron | 25.0% |
| !!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr3_2:82091111-82091130 | Msa0430320:intron | 25.0% |
| ! | AAAGGAAGCTAATACAATAT+TGG | + | chr3_2:82091197-82091216 | Msa0430320:CDS | 25.0% |
| ! | TCACTTGTGTAATTAAAATG+TGG | + | chr3_2:82091256-82091275 | Msa0430320:intron | 25.0% |
| !! | TCAATTGTAATGGAATGTTT+AGG | + | chr3_2:82091744-82091763 | Msa0430320:CDS | 25.0% |
| !! | CAATTGTAATGGAATGTTTA+GGG | + | chr3_2:82091745-82091764 | Msa0430320:CDS | 25.0% |
| !! | AATTGTAATGGAATGTTTAG+GGG | + | chr3_2:82091746-82091765 | Msa0430320:CDS | 25.0% |
| TCATTCATAATCATGGGAAA+AGG | + | chr3_2:82090638-82090657 | Msa0430320:intron | 30.0% | |
| ! | AAGAGAGATTGGATTTTTCA+CGG | - | chr3_2:82090947-82090966 | None:intergenic | 30.0% |
| TTTCAGCATACCAACATTAT+CGG | - | chr3_2:82091172-82091191 | None:intergenic | 30.0% | |
| TAATGAATGTGTTTGATGGA+CGG | + | chr3_2:82091298-82091317 | Msa0430320:intron | 30.0% | |
| GTTTGATTATCGAATTCCAA+CGG | + | chr3_2:82091328-82091347 | Msa0430320:intron | 30.0% | |
| TCTTATTGCTGTGTCTAATA+AGG | + | chr3_2:82091703-82091722 | Msa0430320:CDS | 30.0% | |
| CTTATTGCTGTGTCTAATAA+GGG | + | chr3_2:82091704-82091723 | Msa0430320:CDS | 30.0% | |
| TCATTCATAATCATGGGAAA+AGG | + | chr3_2:82090638-82090657 | Msa0430320:intron | 30.0% | |
| ! | AAGAGAGATTGGATTTTTCA+CGG | - | chr3_2:82090947-82090966 | None:intergenic | 30.0% |
| TTTCAGCATACCAACATTAT+CGG | - | chr3_2:82091172-82091191 | None:intergenic | 30.0% | |
| TAATGAATGTGTTTGATGGA+CGG | + | chr3_2:82091298-82091317 | Msa0430320:intron | 30.0% | |
| GTTTGATTATCGAATTCCAA+CGG | + | chr3_2:82091328-82091347 | Msa0430320:intron | 30.0% | |
| TCTTATTGCTGTGTCTAATA+AGG | + | chr3_2:82091703-82091722 | Msa0430320:CDS | 30.0% | |
| CTTATTGCTGTGTCTAATAA+GGG | + | chr3_2:82091704-82091723 | Msa0430320:CDS | 30.0% | |
| GATACCAAGATTGAGACATT+CGG | - | chr3_2:82090517-82090536 | None:intergenic | 35.0% | |
| GTTTATTACGGAAGAGACAT+GGG | - | chr3_2:82090603-82090622 | None:intergenic | 35.0% | |
| !! | ACAGATCCACTTTTCAATTC+TGG | + | chr3_2:82090823-82090842 | Msa0430320:CDS | 35.0% |
| TTCAGCATACCAACATTATC+GGG | - | chr3_2:82091171-82091190 | None:intergenic | 35.0% | |
| GATAGTCCAGTGAAAATGAA+TGG | + | chr3_2:82091368-82091387 | Msa0430320:CDS | 35.0% | |
| AACAAAATGAGTGGTCGAAT+TGG | + | chr3_2:82091488-82091507 | Msa0430320:CDS | 35.0% | |
| ! | ATTAAGCATCGTCTTGATGA+AGG | + | chr3_2:82091671-82091690 | Msa0430320:CDS | 35.0% |
| ! | TTAAGCATCGTCTTGATGAA+GGG | + | chr3_2:82091672-82091691 | Msa0430320:CDS | 35.0% |
| GCTTATGGGTTCAATTGTAA+TGG | + | chr3_2:82091734-82091753 | Msa0430320:CDS | 35.0% | |
| GATACCAAGATTGAGACATT+CGG | - | chr3_2:82090517-82090536 | None:intergenic | 35.0% | |
| GTTTATTACGGAAGAGACAT+GGG | - | chr3_2:82090603-82090622 | None:intergenic | 35.0% | |
| !! | ACAGATCCACTTTTCAATTC+TGG | + | chr3_2:82090823-82090842 | Msa0430320:CDS | 35.0% |
| TTCAGCATACCAACATTATC+GGG | - | chr3_2:82091171-82091190 | None:intergenic | 35.0% | |
| GATAGTCCAGTGAAAATGAA+TGG | + | chr3_2:82091368-82091387 | Msa0430320:CDS | 35.0% | |
| AACAAAATGAGTGGTCGAAT+TGG | + | chr3_2:82091488-82091507 | Msa0430320:CDS | 35.0% | |
| ! | ATTAAGCATCGTCTTGATGA+AGG | + | chr3_2:82091671-82091690 | Msa0430320:CDS | 35.0% |
| ! | TTAAGCATCGTCTTGATGAA+GGG | + | chr3_2:82091672-82091691 | Msa0430320:CDS | 35.0% |
| GCTTATGGGTTCAATTGTAA+TGG | + | chr3_2:82091734-82091753 | Msa0430320:CDS | 35.0% | |
| ACATTCGGTAAGAAGCTGTT+TGG | - | chr3_2:82090502-82090521 | None:intergenic | 40.0% | |
| CTTACCGAATGTCTCAATCT+TGG | + | chr3_2:82090510-82090529 | Msa0430320:CDS | 40.0% | |
| GGTTTATTACGGAAGAGACA+TGG | - | chr3_2:82090604-82090623 | None:intergenic | 40.0% | |
| GATGGTAACAAGAGAAGATG+TGG | + | chr3_2:82090901-82090920 | Msa0430320:CDS | 40.0% | |
| ! | AGAGATTGGATTTTTCACGG+TGG | - | chr3_2:82090944-82090963 | None:intergenic | 40.0% |
| !! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr3_2:82091020-82091039 | Msa0430320:CDS | 40.0% |
| TTCATCACTCCCGATAATGT+TGG | + | chr3_2:82091159-82091178 | Msa0430320:CDS | 40.0% | |
| ATTCCAACGGAAAAATGTGC+TGG | + | chr3_2:82091341-82091360 | Msa0430320:CDS | 40.0% | |
| ! | ATTGGTGATTCACCTCTCAT+AGG | + | chr3_2:82091506-82091525 | Msa0430320:CDS | 40.0% |
| ACTTATGCATGTGATGTGTG+TGG | + | chr3_2:82091536-82091555 | Msa0430320:CDS | 40.0% | |
| GTTATGGAGTACAAAGGCTA+TGG | + | chr3_2:82091623-82091642 | Msa0430320:CDS | 40.0% | |
| TGTGTCTAATAAGGGTGAAG+TGG | + | chr3_2:82091712-82091731 | Msa0430320:CDS | 40.0% | |
| AATAAGGGTGAAGTGGCTTA+TGG | + | chr3_2:82091719-82091738 | Msa0430320:CDS | 40.0% | |
| ATAAGGGTGAAGTGGCTTAT+GGG | + | chr3_2:82091720-82091739 | Msa0430320:CDS | 40.0% | |
| GTTCATGGAGGTTGGAATTT+GGG | + | chr3_2:82091787-82091806 | Msa0430320:CDS | 40.0% | |
| ACATTCGGTAAGAAGCTGTT+TGG | - | chr3_2:82090502-82090521 | None:intergenic | 40.0% | |
| CTTACCGAATGTCTCAATCT+TGG | + | chr3_2:82090510-82090529 | Msa0430320:CDS | 40.0% | |
| GGTTTATTACGGAAGAGACA+TGG | - | chr3_2:82090604-82090623 | None:intergenic | 40.0% | |
| GATGGTAACAAGAGAAGATG+TGG | + | chr3_2:82090901-82090920 | Msa0430320:CDS | 40.0% | |
| ! | AGAGATTGGATTTTTCACGG+TGG | - | chr3_2:82090944-82090963 | None:intergenic | 40.0% |
| !! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr3_2:82091020-82091039 | Msa0430320:CDS | 40.0% |
| TTCATCACTCCCGATAATGT+TGG | + | chr3_2:82091159-82091178 | Msa0430320:CDS | 40.0% | |
| ATTCCAACGGAAAAATGTGC+TGG | + | chr3_2:82091341-82091360 | Msa0430320:CDS | 40.0% | |
| ! | ATTGGTGATTCACCTCTCAT+AGG | + | chr3_2:82091506-82091525 | Msa0430320:CDS | 40.0% |
| ACTTATGCATGTGATGTGTG+TGG | + | chr3_2:82091536-82091555 | Msa0430320:CDS | 40.0% | |
| GTTATGGAGTACAAAGGCTA+TGG | + | chr3_2:82091623-82091642 | Msa0430320:CDS | 40.0% | |
| TGTGTCTAATAAGGGTGAAG+TGG | + | chr3_2:82091712-82091731 | Msa0430320:CDS | 40.0% | |
| AATAAGGGTGAAGTGGCTTA+TGG | + | chr3_2:82091719-82091738 | Msa0430320:CDS | 40.0% | |
| ATAAGGGTGAAGTGGCTTAT+GGG | + | chr3_2:82091720-82091739 | Msa0430320:CDS | 40.0% | |
| GTTCATGGAGGTTGGAATTT+GGG | + | chr3_2:82091787-82091806 | Msa0430320:CDS | 40.0% | |
| TGACGGTGTGTTGGAAGATT+AGG | - | chr3_2:82090471-82090490 | None:intergenic | 45.0% | |
| TAATCTTCCAACACACCGTC+AGG | + | chr3_2:82090470-82090489 | Msa0430320:CDS | 45.0% | |
| TGCTCTGACAGCAAAAGGAA+CGG | + | chr3_2:82090855-82090874 | Msa0430320:CDS | 45.0% | |
| AGCAAAAGGAACGGTGGAAA+TGG | + | chr3_2:82090864-82090883 | Msa0430320:CDS | 45.0% | |
| AAAAGGAACGGTGGAAATGG+AGG | + | chr3_2:82090867-82090886 | Msa0430320:CDS | 45.0% | |
| GGAAATGGAGGCTAGTATCA+TGG | + | chr3_2:82090879-82090898 | Msa0430320:CDS | 45.0% | |
| ATGGAGGCTAGTATCATGGA+TGG | + | chr3_2:82090883-82090902 | Msa0430320:CDS | 45.0% | |
| !! | AGAAGATGTGGTGCTGTATC+TGG | + | chr3_2:82090913-82090932 | Msa0430320:CDS | 45.0% |
| ACAAGACGAGCAAGAGAGAT+TGG | - | chr3_2:82090958-82090977 | None:intergenic | 45.0% | |
| AGAAGGCGAGGTAAGAATGA+GGG | - | chr3_2:82090993-82091012 | None:intergenic | 45.0% | |
| AAATTCTTCTGCACCGGAGA+AGG | - | chr3_2:82091010-82091029 | None:intergenic | 45.0% | |
| CCTAGCAAATTCTTCTGCAC+CGG | - | chr3_2:82091016-82091035 | None:intergenic | 45.0% | |
| !! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr3_2:82091014-82091033 | Msa0430320:CDS | 45.0% |
| !!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr3_2:82091116-82091135 | Msa0430320:intron | 45.0% |
| TGGTATGCTGAAACTCGCAA+AGG | + | chr3_2:82091179-82091198 | Msa0430320:CDS | 45.0% | |
| ! | TGAATGTGTTTGATGGACGG+TGG | + | chr3_2:82091301-82091320 | Msa0430320:intron | 45.0% |
| ! | GTTCCAGCACATTTTTCCGT+TGG | - | chr3_2:82091347-82091366 | None:intergenic | 45.0% |
| ! | GGCAGACCATTCATTTTCAC+TGG | - | chr3_2:82091377-82091396 | None:intergenic | 45.0% |
| GGGCTGATGAACAAAATGAG+TGG | + | chr3_2:82091479-82091498 | Msa0430320:CDS | 45.0% | |
| TAAGTTCCAGCACCTATGAG+AGG | - | chr3_2:82091521-82091540 | None:intergenic | 45.0% | |
| GAAGGTGAAGCTATCATTCG+TGG | + | chr3_2:82091575-82091594 | Msa0430320:CDS | 45.0% | |
| GCTGCAGTTATGGAGTACAA+AGG | + | chr3_2:82091617-82091636 | Msa0430320:CDS | 45.0% | |
| CTATGGACTTCAACAAGCAG+TGG | + | chr3_2:82091640-82091659 | Msa0430320:CDS | 45.0% | |
| ! | TGCAACTGAGAATGGGTTCA+TGG | + | chr3_2:82091772-82091791 | Msa0430320:CDS | 45.0% |
| ! | AACTGAGAATGGGTTCATGG+AGG | + | chr3_2:82091775-82091794 | Msa0430320:CDS | 45.0% |
| GGTTCATGGAGGTTGGAATT+TGG | + | chr3_2:82091786-82091805 | Msa0430320:CDS | 45.0% | |
| TGACGGTGTGTTGGAAGATT+AGG | - | chr3_2:82090471-82090490 | None:intergenic | 45.0% | |
| TAATCTTCCAACACACCGTC+AGG | + | chr3_2:82090470-82090489 | Msa0430320:CDS | 45.0% | |
| TGCTCTGACAGCAAAAGGAA+CGG | + | chr3_2:82090855-82090874 | Msa0430320:CDS | 45.0% | |
| AGCAAAAGGAACGGTGGAAA+TGG | + | chr3_2:82090864-82090883 | Msa0430320:CDS | 45.0% | |
| AAAAGGAACGGTGGAAATGG+AGG | + | chr3_2:82090867-82090886 | Msa0430320:CDS | 45.0% | |
| GGAAATGGAGGCTAGTATCA+TGG | + | chr3_2:82090879-82090898 | Msa0430320:CDS | 45.0% | |
| ATGGAGGCTAGTATCATGGA+TGG | + | chr3_2:82090883-82090902 | Msa0430320:CDS | 45.0% | |
| !! | AGAAGATGTGGTGCTGTATC+TGG | + | chr3_2:82090913-82090932 | Msa0430320:CDS | 45.0% |
| ACAAGACGAGCAAGAGAGAT+TGG | - | chr3_2:82090958-82090977 | None:intergenic | 45.0% | |
| AGAAGGCGAGGTAAGAATGA+GGG | - | chr3_2:82090993-82091012 | None:intergenic | 45.0% | |
| AAATTCTTCTGCACCGGAGA+AGG | - | chr3_2:82091010-82091029 | None:intergenic | 45.0% | |
| CCTAGCAAATTCTTCTGCAC+CGG | - | chr3_2:82091016-82091035 | None:intergenic | 45.0% | |
| !! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr3_2:82091014-82091033 | Msa0430320:CDS | 45.0% |
| !!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr3_2:82091116-82091135 | Msa0430320:intron | 45.0% |
| TGGTATGCTGAAACTCGCAA+AGG | + | chr3_2:82091179-82091198 | Msa0430320:CDS | 45.0% | |
| ! | TGAATGTGTTTGATGGACGG+TGG | + | chr3_2:82091301-82091320 | Msa0430320:intron | 45.0% |
| ! | GTTCCAGCACATTTTTCCGT+TGG | - | chr3_2:82091347-82091366 | None:intergenic | 45.0% |
| ! | GGCAGACCATTCATTTTCAC+TGG | - | chr3_2:82091377-82091396 | None:intergenic | 45.0% |
| GGGCTGATGAACAAAATGAG+TGG | + | chr3_2:82091479-82091498 | Msa0430320:CDS | 45.0% | |
| TAAGTTCCAGCACCTATGAG+AGG | - | chr3_2:82091521-82091540 | None:intergenic | 45.0% | |
| GAAGGTGAAGCTATCATTCG+TGG | + | chr3_2:82091575-82091594 | Msa0430320:CDS | 45.0% | |
| GCTGCAGTTATGGAGTACAA+AGG | + | chr3_2:82091617-82091636 | Msa0430320:CDS | 45.0% | |
| CTATGGACTTCAACAAGCAG+TGG | + | chr3_2:82091640-82091659 | Msa0430320:CDS | 45.0% | |
| ! | TGCAACTGAGAATGGGTTCA+TGG | + | chr3_2:82091772-82091791 | Msa0430320:CDS | 45.0% |
| ! | AACTGAGAATGGGTTCATGG+AGG | + | chr3_2:82091775-82091794 | Msa0430320:CDS | 45.0% |
| GGTTCATGGAGGTTGGAATT+TGG | + | chr3_2:82091786-82091805 | Msa0430320:CDS | 45.0% | |
| !!! | AATAATATAATTTTTTAATC+CGG | + | chr3_2:82090723-82090742 | Msa0430320:intron | 5.0% |
| !!! | AATAATATAATTTTTTAATC+CGG | + | chr3_2:82090723-82090742 | Msa0430320:intron | 5.0% |
| ! | GGTTGGGCTATTGCTGTTCA+TGG | + | chr3_2:82090429-82090448 | Msa0430320:CDS | 50.0% |
| ! | TGGGCTATTGCTGTTCATGG+CGG | + | chr3_2:82090432-82090451 | Msa0430320:CDS | 50.0% |
| ! | GCTGTTTGGCTTCTTCCTGA+CGG | - | chr3_2:82090488-82090507 | None:intergenic | 50.0% |
| CCACGGCCAGAATTGAAAAG+TGG | - | chr3_2:82090832-82090851 | None:intergenic | 50.0% | |
| !! | CCACTTTTCAATTCTGGCCG+TGG | + | chr3_2:82090829-82090848 | Msa0430320:CDS | 50.0% |
| TTGCTGTCAGAGCAGATCCA+CGG | - | chr3_2:82090849-82090868 | None:intergenic | 50.0% | |
| GGATCTGCTCTGACAGCAAA+AGG | + | chr3_2:82090850-82090869 | Msa0430320:CDS | 50.0% | |
| TCTGACAGCAAAAGGAACGG+TGG | + | chr3_2:82090858-82090877 | Msa0430320:CDS | 50.0% | |
| CTCTCTTGCTCGTCTTGTCA+TGG | + | chr3_2:82090960-82090979 | Msa0430320:CDS | 50.0% | |
| GAAGGCGAGGTAAGAATGAG+GGG | - | chr3_2:82090992-82091011 | None:intergenic | 50.0% | |
| GAGAAGGCGAGGTAAGAATG+AGG | - | chr3_2:82090994-82091013 | None:intergenic | 50.0% | |
| CATTCTTACCTCGCCTTCTC+CGG | + | chr3_2:82090994-82091013 | Msa0430320:CDS | 50.0% | |
| ! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr3_2:82091013-82091032 | Msa0430320:CDS | 50.0% |
| GATTCACCTCTCATAGGTGC+TGG | + | chr3_2:82091512-82091531 | Msa0430320:CDS | 50.0% | |
| GTGTGTGGAGTTTCATGCAC+TGG | + | chr3_2:82091551-82091570 | Msa0430320:CDS | 50.0% | |
| ! | GGAGTTTCATGCACTGGTGA+AGG | + | chr3_2:82091557-82091576 | Msa0430320:CDS | 50.0% |
| ACGTGAAGTGGCTGCAGTTA+TGG | + | chr3_2:82091607-82091626 | Msa0430320:CDS | 50.0% | |
| CGTCTTGATGAAGGGTTTGC+TGG | + | chr3_2:82091680-82091699 | Msa0430320:CDS | 50.0% | |
| AGGGGATGTGCAACTGAGAA+TGG | + | chr3_2:82091764-82091783 | Msa0430320:CDS | 50.0% | |
| GGGGATGTGCAACTGAGAAT+GGG | + | chr3_2:82091765-82091784 | Msa0430320:CDS | 50.0% | |
| ! | GAGAATGGGTTCATGGAGGT+TGG | + | chr3_2:82091779-82091798 | Msa0430320:CDS | 50.0% |
| ! | GGTTGGGCTATTGCTGTTCA+TGG | + | chr3_2:82090429-82090448 | Msa0430320:CDS | 50.0% |
| ! | TGGGCTATTGCTGTTCATGG+CGG | + | chr3_2:82090432-82090451 | Msa0430320:CDS | 50.0% |
| ! | GCTGTTTGGCTTCTTCCTGA+CGG | - | chr3_2:82090488-82090507 | None:intergenic | 50.0% |
| CCACGGCCAGAATTGAAAAG+TGG | - | chr3_2:82090832-82090851 | None:intergenic | 50.0% | |
| !! | CCACTTTTCAATTCTGGCCG+TGG | + | chr3_2:82090829-82090848 | Msa0430320:CDS | 50.0% |
| TTGCTGTCAGAGCAGATCCA+CGG | - | chr3_2:82090849-82090868 | None:intergenic | 50.0% | |
| GGATCTGCTCTGACAGCAAA+AGG | + | chr3_2:82090850-82090869 | Msa0430320:CDS | 50.0% | |
| TCTGACAGCAAAAGGAACGG+TGG | + | chr3_2:82090858-82090877 | Msa0430320:CDS | 50.0% | |
| CTCTCTTGCTCGTCTTGTCA+TGG | + | chr3_2:82090960-82090979 | Msa0430320:CDS | 50.0% | |
| GAAGGCGAGGTAAGAATGAG+GGG | - | chr3_2:82090992-82091011 | None:intergenic | 50.0% | |
| GAGAAGGCGAGGTAAGAATG+AGG | - | chr3_2:82090994-82091013 | None:intergenic | 50.0% | |
| CATTCTTACCTCGCCTTCTC+CGG | + | chr3_2:82090994-82091013 | Msa0430320:CDS | 50.0% | |
| ! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr3_2:82091013-82091032 | Msa0430320:CDS | 50.0% |
| GATTCACCTCTCATAGGTGC+TGG | + | chr3_2:82091512-82091531 | Msa0430320:CDS | 50.0% | |
| GTGTGTGGAGTTTCATGCAC+TGG | + | chr3_2:82091551-82091570 | Msa0430320:CDS | 50.0% | |
| ! | GGAGTTTCATGCACTGGTGA+AGG | + | chr3_2:82091557-82091576 | Msa0430320:CDS | 50.0% |
| ACGTGAAGTGGCTGCAGTTA+TGG | + | chr3_2:82091607-82091626 | Msa0430320:CDS | 50.0% | |
| CGTCTTGATGAAGGGTTTGC+TGG | + | chr3_2:82091680-82091699 | Msa0430320:CDS | 50.0% | |
| AGGGGATGTGCAACTGAGAA+TGG | + | chr3_2:82091764-82091783 | Msa0430320:CDS | 50.0% | |
| GGGGATGTGCAACTGAGAAT+GGG | + | chr3_2:82091765-82091784 | Msa0430320:CDS | 50.0% | |
| ! | GAGAATGGGTTCATGGAGGT+TGG | + | chr3_2:82091779-82091798 | Msa0430320:CDS | 50.0% |
| GCTTCTTCCTGACGGTGTGT+TGG | - | chr3_2:82090480-82090499 | None:intergenic | 55.0% | |
| !! | CGAGTGCGGAAGCATTGGAT+CGG | - | chr3_2:82090548-82090567 | None:intergenic | 55.0% |
| AAGTTCGACGACGTCGAGTG+CGG | - | chr3_2:82090562-82090581 | None:intergenic | 55.0% | |
| !! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr3_2:82091125-82091144 | Msa0430320:intron | 55.0% |
| TCCGGCGCGTAAATGCTCAT+CGG | - | chr3_2:82091398-82091417 | None:intergenic | 55.0% | |
| !! | TGTGTGGTGGTGGACAGTCA+AGG | + | chr3_2:82091428-82091447 | Msa0430320:CDS | 55.0% |
| ! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr3_2:82091455-82091474 | Msa0430320:CDS | 55.0% |
| CTGCTGCAACCTCAACTGGA+GGG | + | chr3_2:82091459-82091478 | Msa0430320:CDS | 55.0% | |
| GTTCATCAGCCCTCCAGTTG+AGG | - | chr3_2:82091471-82091490 | None:intergenic | 55.0% | |
| TGGCACTCTTGCACGTGAAG+TGG | + | chr3_2:82091595-82091614 | Msa0430320:CDS | 55.0% | |
| GCTTCTTCCTGACGGTGTGT+TGG | - | chr3_2:82090480-82090499 | None:intergenic | 55.0% | |
| !! | CGAGTGCGGAAGCATTGGAT+CGG | - | chr3_2:82090548-82090567 | None:intergenic | 55.0% |
| AAGTTCGACGACGTCGAGTG+CGG | - | chr3_2:82090562-82090581 | None:intergenic | 55.0% | |
| !! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr3_2:82091125-82091144 | Msa0430320:intron | 55.0% |
| TCCGGCGCGTAAATGCTCAT+CGG | - | chr3_2:82091398-82091417 | None:intergenic | 55.0% | |
| !! | TGTGTGGTGGTGGACAGTCA+AGG | + | chr3_2:82091428-82091447 | Msa0430320:CDS | 55.0% |
| ! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr3_2:82091455-82091474 | Msa0430320:CDS | 55.0% |
| CTGCTGCAACCTCAACTGGA+GGG | + | chr3_2:82091459-82091478 | Msa0430320:CDS | 55.0% | |
| GTTCATCAGCCCTCCAGTTG+AGG | - | chr3_2:82091471-82091490 | None:intergenic | 55.0% | |
| TGGCACTCTTGCACGTGAAG+TGG | + | chr3_2:82091595-82091614 | Msa0430320:CDS | 55.0% | |
| ! | ATTGCTGTTCATGGCGGCGC+TGG | + | chr3_2:82090438-82090457 | Msa0430320:CDS | 60.0% |
| ! | GACGTCGAGTGCGGAAGCAT+TGG | - | chr3_2:82090553-82090572 | None:intergenic | 60.0% |
| GCCGATGAGCATTTACGCGC+CGG | + | chr3_2:82091394-82091413 | Msa0430320:CDS | 60.0% | |
| ATTTACGCGCCGGAGACCGT+CGG | + | chr3_2:82091404-82091423 | Msa0430320:CDS | 60.0% | |
| ACCACACATCCGACGGTCTC+CGG | - | chr3_2:82091416-82091435 | None:intergenic | 60.0% | |
| GTCCACCACCACACATCCGA+CGG | - | chr3_2:82091423-82091442 | None:intergenic | 60.0% | |
| GCTGCTGCAACCTCAACTGG+AGG | + | chr3_2:82091458-82091477 | Msa0430320:CDS | 60.0% | |
| ! | ATTGCTGTTCATGGCGGCGC+TGG | + | chr3_2:82090438-82090457 | Msa0430320:CDS | 60.0% |
| ! | GACGTCGAGTGCGGAAGCAT+TGG | - | chr3_2:82090553-82090572 | None:intergenic | 60.0% |
| GCCGATGAGCATTTACGCGC+CGG | + | chr3_2:82091394-82091413 | Msa0430320:CDS | 60.0% | |
| ATTTACGCGCCGGAGACCGT+CGG | + | chr3_2:82091404-82091423 | Msa0430320:CDS | 60.0% | |
| ACCACACATCCGACGGTCTC+CGG | - | chr3_2:82091416-82091435 | None:intergenic | 60.0% | |
| GTCCACCACCACACATCCGA+CGG | - | chr3_2:82091423-82091442 | None:intergenic | 60.0% | |
| GCTGCTGCAACCTCAACTGG+AGG | + | chr3_2:82091458-82091477 | Msa0430320:CDS | 60.0% | |
| !! | TGTTCATGGCGGCGCTGGTG+TGG | + | chr3_2:82090443-82090462 | Msa0430320:CDS | 65.0% |
| CTTCTGCACCGGAGAAGGCG+AGG | - | chr3_2:82091005-82091024 | None:intergenic | 65.0% | |
| GGAGACCGTCGGATGTGTGG+TGG | + | chr3_2:82091415-82091434 | Msa0430320:CDS | 65.0% | |
| GACCGTCGGATGTGTGGTGG+TGG | + | chr3_2:82091418-82091437 | Msa0430320:CDS | 65.0% | |
| !! | TGTTCATGGCGGCGCTGGTG+TGG | + | chr3_2:82090443-82090462 | Msa0430320:CDS | 65.0% |
| CTTCTGCACCGGAGAAGGCG+AGG | - | chr3_2:82091005-82091024 | None:intergenic | 65.0% | |
| GGAGACCGTCGGATGTGTGG+TGG | + | chr3_2:82091415-82091434 | Msa0430320:CDS | 65.0% | |
| GACCGTCGGATGTGTGGTGG+TGG | + | chr3_2:82091418-82091437 | Msa0430320:CDS | 65.0% | |
| GCCGGAGACCGTCGGATGTG+TGG | + | chr3_2:82091412-82091431 | Msa0430320:CDS | 70.0% | |
| GCCGGAGACCGTCGGATGTG+TGG | + | chr3_2:82091412-82091431 | Msa0430320:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 82090423 | 82091814 | 82090423 | ID=Msa0430320;Name=Msa0430320 |
| chr3_2 | mRNA | 82090423 | 82091814 | 82090423 | ID=Msa0430320-mRNA-1;Parent=Msa0430320;Name=Msa0430320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|322 |
| chr3_2 | exon | 82090423 | 82090584 | 82090423 | ID=Msa0430320-mRNA-1:exon:22753;Parent=Msa0430320-mRNA-1 |
| chr3_2 | exon | 82090808 | 82091041 | 82090808 | ID=Msa0430320-mRNA-1:exon:22754;Parent=Msa0430320-mRNA-1 |
| chr3_2 | exon | 82091132 | 82091218 | 82091132 | ID=Msa0430320-mRNA-1:exon:22755;Parent=Msa0430320-mRNA-1 |
| chr3_2 | exon | 82091329 | 82091814 | 82091329 | ID=Msa0430320-mRNA-1:exon:22756;Parent=Msa0430320-mRNA-1 |
| chr3_2 | CDS | 82090423 | 82090584 | 82090423 | ID=Msa0430320-mRNA-1:cds;Parent=Msa0430320-mRNA-1 |
| chr3_2 | CDS | 82090808 | 82091041 | 82090808 | ID=Msa0430320-mRNA-1:cds;Parent=Msa0430320-mRNA-1 |
| chr3_2 | CDS | 82091132 | 82091218 | 82091132 | ID=Msa0430320-mRNA-1:cds;Parent=Msa0430320-mRNA-1 |
| chr3_2 | CDS | 82091329 | 82091814 | 82091329 | ID=Msa0430320-mRNA-1:cds;Parent=Msa0430320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
