Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200080 | Q43560.1 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 2.00e-106 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200080 | sp|Q43560|PR1_MEDSA | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 2.50e-109 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200080 | Q7FNV7 | 99.363 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 7.78e-106 | 308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046680 | Msa0200080 | 0.850530 | 1.600113e-60 | -8.615850e-47 |
| Msa0059880 | Msa0200080 | 0.810991 | 8.753203e-51 | -8.615850e-47 |
| Msa0129290 | Msa0200080 | 0.857249 | 1.855792e-62 | -8.615850e-47 |
| Msa0140270 | Msa0200080 | 0.800080 | 1.704468e-48 | -8.615850e-47 |
| Msa0150910 | Msa0200080 | 0.809098 | 2.237578e-50 | -8.615850e-47 |
| Msa0200080 | Msa0200090 | 0.912759 | 1.346943e-83 | -8.615850e-47 |
| Msa0200080 | Msa0207930 | 0.801557 | 8.512319e-49 | -8.615850e-47 |
| Msa0200080 | Msa0207970 | 0.813348 | 2.678987e-51 | -8.615850e-47 |
| Msa0200080 | Msa0242700 | 0.835725 | 1.419684e-56 | -8.615850e-47 |
| Msa0200080 | Msa0242710 | 0.823364 | 1.441008e-53 | -8.615850e-47 |
| Msa0200080 | Msa0242720 | 0.845035 | 5.220707e-59 | -8.615850e-47 |
| Msa0200080 | Msa0280930 | 0.874693 | 5.534386e-68 | -8.615850e-47 |
| Msa0200080 | Msa0280940 | 0.857871 | 1.215135e-62 | -8.615850e-47 |
| Msa0200080 | Msa0280950 | 0.817825 | 2.697757e-52 | -8.615850e-47 |
| Msa0200080 | Msa0320130 | 0.857933 | 1.164334e-62 | -8.615850e-47 |
| Msa0200080 | Msa0320140 | 0.840785 | 7.054596e-58 | -8.615850e-47 |
| Msa0200080 | Msa0320160 | 0.833415 | 5.404660e-56 | -8.615850e-47 |
| Msa0200080 | Msa0324810 | 0.801120 | 1.046008e-48 | -8.615850e-47 |
| Msa0200080 | Msa0390200 | 0.801246 | 9.855942e-49 | -8.615850e-47 |
| Msa0200080 | Msa0421080 | 0.821808 | 3.316572e-53 | -8.615850e-47 |
| Msa0200080 | Msa0430320 | 0.820711 | 5.938620e-53 | -8.615850e-47 |
| Msa0200080 | Msa0430460 | 0.804414 | 2.185611e-49 | -8.615850e-47 |
| Msa0200080 | Msa0466850 | 0.849957 | 2.315570e-60 | -8.615850e-47 |
| Msa0200080 | Msa0513670 | 0.849958 | 2.314630e-60 | -8.615850e-47 |
| Msa0200080 | Msa0588730 | 0.813438 | 2.559040e-51 | -8.615850e-47 |
| Msa0200080 | Msa0614960 | 0.808073 | 3.705407e-50 | -8.615850e-47 |
| Msa0200080 | Msa0629030 | 0.854552 | 1.140822e-61 | -8.615850e-47 |
| Msa0200080 | Msa0629040 | 0.838565 | 2.666420e-57 | -8.615850e-47 |
| Msa0200080 | Msa0666580 | 0.846856 | 1.669580e-59 | -8.615850e-47 |
| Msa0200080 | Msa0668220 | 0.808772 | 2.628226e-50 | -8.615850e-47 |
| Msa0200080 | Msa0699170 | 0.800396 | 1.469676e-48 | -8.615850e-47 |
| Msa0200080 | Msa0716620 | 0.858524 | 7.764943e-63 | -8.615850e-47 |
| Msa0200080 | Msa0728230 | 0.814372 | 1.593313e-51 | -8.615850e-47 |
| Msa0200080 | Msa0728520 | 0.826699 | 2.349901e-54 | -8.615850e-47 |
| Msa0200080 | Msa0728570 | 0.814941 | 1.192294e-51 | -8.615850e-47 |
| Msa0200080 | Msa0744550 | 0.803315 | 3.696319e-49 | -8.615850e-47 |
| Msa0200080 | Msa0744560 | 0.803538 | 3.324275e-49 | -8.615850e-47 |
| Msa0200080 | Msa0753410 | 0.838258 | 3.199082e-57 | -8.615850e-47 |
| Msa0200080 | Msa0772350 | 0.853462 | 2.352497e-61 | -8.615850e-47 |
| Msa0200080 | Msa0776540 | 0.827424 | 1.576940e-54 | -8.615850e-47 |
| Msa0200080 | Msa0793570 | 0.801255 | 9.814141e-49 | -8.615850e-47 |
| Msa0200080 | Msa0794240 | 0.808052 | 3.743269e-50 | -8.615850e-47 |
| Msa0200080 | Msa0795330 | 0.841959 | 3.462031e-58 | -8.615850e-47 |
| Msa0200080 | Msa0826360 | 0.841864 | 3.668932e-58 | -8.615850e-47 |
| Msa0200080 | Msa0826370 | 0.822060 | 2.899622e-53 | -8.615850e-47 |
| Msa0200080 | Msa0837550 | 0.833629 | 4.778273e-56 | -8.615850e-47 |
| Msa0200080 | Msa0865810 | 0.812381 | 4.362498e-51 | -8.615850e-47 |
| Msa0200080 | Msa0865830 | 0.827811 | 1.272763e-54 | -8.615850e-47 |
| Msa0200080 | Msa0948460 | 0.820531 | 6.529997e-53 | -8.615850e-47 |
| Msa0200080 | Msa0985250 | 0.800667 | 1.294264e-48 | -8.615850e-47 |
| Msa0200080 | Msa1023430 | 0.843837 | 1.096299e-58 | -8.615850e-47 |
| Msa0200080 | Msa1027340 | 0.804530 | 2.066934e-49 | -8.615850e-47 |
| Msa0200080 | Msa1055710 | -0.805023 | 1.630425e-49 | -8.615850e-47 |
| Msa0200080 | Msa1061840 | 0.818029 | 2.425721e-52 | -8.615850e-47 |
| Msa0200080 | Msa1079870 | 0.807801 | 4.233507e-50 | -8.615850e-47 |
| Msa0200080 | Msa1107510 | 0.836623 | 8.395989e-57 | -8.615850e-47 |
| Msa0200080 | Msa1109880 | 0.805509 | 1.289809e-49 | -8.615850e-47 |
| Msa0200080 | Msa1110900 | 0.814941 | 1.191962e-51 | -8.615850e-47 |
| Msa0200080 | Msa1151070 | 0.847453 | 1.145448e-59 | -8.615850e-47 |
| Msa0200080 | Msa1154570 | 0.810975 | 8.820947e-51 | -8.615850e-47 |
| Msa0200080 | Msa1323030 | 0.819827 | 9.466312e-53 | -8.615850e-47 |
| Msa0200080 | Msa1459930 | 0.824112 | 9.627470e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200080 | MtrunA17_Chr2g0295021 | 99.363 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 1.50e-109 | 308 |
| Msa0200080 | MtrunA17_Chr2g0295001 | 99.363 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 1.50e-109 | 308 |
| Msa0200080 | MtrunA17_Chr2g0295051 | 87.261 | 157 | 20 | 0 | 1 | 157 | 1 | 157 | 8.37e-96 | 273 |
| Msa0200080 | MtrunA17_Chr2g0295064 | 84.713 | 157 | 24 | 0 | 1 | 157 | 68 | 224 | 5.57e-94 | 271 |
| Msa0200080 | MtrunA17_Chr2g0295041 | 83.439 | 157 | 26 | 0 | 1 | 157 | 1 | 157 | 2.65e-93 | 267 |
| Msa0200080 | MtrunA17_Chr4g0067951 | 72.611 | 157 | 43 | 0 | 1 | 157 | 1 | 157 | 2.06e-80 | 234 |
| Msa0200080 | MtrunA17_Chr6g0462311 | 71.975 | 157 | 44 | 0 | 1 | 157 | 1 | 157 | 2.32e-79 | 232 |
| Msa0200080 | MtrunA17_Chr2g0295141 | 64.968 | 157 | 55 | 0 | 1 | 157 | 1 | 157 | 1.08e-68 | 205 |
| Msa0200080 | MtrunA17_Chr6g0462291 | 70.714 | 140 | 41 | 0 | 1 | 140 | 1 | 140 | 2.52e-67 | 202 |
| Msa0200080 | MtrunA17_Chr2g0295091 | 61.146 | 157 | 61 | 0 | 1 | 157 | 1 | 157 | 2.13e-65 | 196 |
| Msa0200080 | MtrunA17_Chr2g0295104 | 61.146 | 157 | 61 | 0 | 1 | 157 | 1 | 157 | 1.63e-64 | 194 |
| Msa0200080 | MtrunA17_Chr2g0295124 | 61.146 | 157 | 61 | 0 | 1 | 157 | 1 | 157 | 3.17e-63 | 191 |
| Msa0200080 | MtrunA17_Chr2g0295081 | 59.873 | 157 | 63 | 0 | 1 | 157 | 1 | 157 | 2.73e-62 | 189 |
| Msa0200080 | MtrunA17_Chr2g0295211 | 41.026 | 156 | 91 | 1 | 1 | 155 | 1 | 156 | 2.23e-39 | 130 |
| Msa0200080 | MtrunA17_Chr4g0067841 | 40.385 | 156 | 92 | 1 | 1 | 155 | 1 | 156 | 5.19e-37 | 124 |
| Msa0200080 | MtrunA17_Chr4g0067921 | 44.099 | 161 | 83 | 5 | 1 | 157 | 1 | 158 | 2.63e-32 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATAACCTTTGGAATA+AGG | 0.200219 | 2_1:-19659890 | None:intergenic |
| AACGAAAGTAAGTTTCTTGA+TGG | 0.287513 | 2_1:-19659958 | None:intergenic |
| AGCTATATGCTTTAGTAATC+AGG | 0.289844 | 2_1:-19660809 | None:intergenic |
| CCCTTGATTTCCTCTTCACT+TGG | 0.329042 | 2_1:-19660728 | None:intergenic |
| CTTCAACAATTTCAATACTT+TGG | 0.342783 | 2_1:-19659917 | None:intergenic |
| ACTTGGTGCAGCATCACCTT+TGG | 0.357443 | 2_1:-19660711 | None:intergenic |
| GAGATCTTCTCCACAGTGTC+TGG | 0.364866 | 2_1:-19660620 | None:intergenic |
| AAGAAACTTACTTTCGTTGA+AGG | 0.370871 | 2_1:+19659963 | Msa0200080:CDS |
| AGTAAGTTTCTTGATGGTTC+CGG | 0.371837 | 2_1:-19659952 | None:intergenic |
| GGCTCTTGAAGGTTACGTTT+TGG | 0.372797 | 2_1:+19660781 | Msa0200080:CDS |
| CAAAGTATTGAAATTGTTGA+AGG | 0.421501 | 2_1:+19659918 | Msa0200080:CDS |
| GCTTACAACTACAGCATAGT+TGG | 0.425478 | 2_1:+19660584 | Msa0200080:CDS |
| TGGATGGCATCAATAACCTT+TGG | 0.428619 | 2_1:-19659897 | None:intergenic |
| TTTGCAGTGGATCCTCCATC+TGG | 0.432310 | 2_1:-19660668 | None:intergenic |
| AACAATTTCAATACTTTGGA+TGG | 0.439896 | 2_1:-19659913 | None:intergenic |
| ATTGAAATTGTTGAAGGAAA+CGG | 0.445615 | 2_1:+19659924 | Msa0200080:CDS |
| AAATCAAGGGTGGCAAAGCT+AGG | 0.448601 | 2_1:+19660741 | Msa0200080:CDS |
| TTTGAGTCTAAATTGTCTGC+AGG | 0.453113 | 2_1:+19660644 | Msa0200080:CDS |
| CATGGGTGTATTCAACTTTG+AGG | 0.475033 | 2_1:+19659803 | None:intergenic |
| AGAGCTTTGTAAAGTCTAGC+AGG | 0.480944 | 2_1:-19659849 | None:intergenic |
| GGTGGCAAAGCTAGGGGTGA+TGG | 0.489081 | 2_1:+19660749 | Msa0200080:CDS |
| AATCAAGGGTGGCAAAGCTA+GGG | 0.491277 | 2_1:+19660742 | Msa0200080:CDS |
| ACCAAGTGAAGAGGAAATCA+AGG | 0.498836 | 2_1:+19660727 | Msa0200080:CDS |
| TACAGCATAGTTGGAGGTGG+TGG | 0.504513 | 2_1:+19660593 | Msa0200080:CDS |
| TTCTGATAACCTTATTCCAA+AGG | 0.526563 | 2_1:+19659881 | Msa0200080:CDS |
| AAAGTATGATTTGCACAAAG+TGG | 0.527363 | 2_1:+19660538 | Msa0200080:CDS |
| GTTGAAGGAAACGGTGGTGC+CGG | 0.528042 | 2_1:+19659933 | Msa0200080:CDS |
| TGCAGACAATTTAGACTCAA+AGG | 0.553148 | 2_1:-19660642 | None:intergenic |
| AAATTGTCTGCAGGGCCAGA+TGG | 0.558648 | 2_1:+19660653 | Msa0200080:CDS |
| TTTCACAGTAAGCTTTGCAG+TGG | 0.560964 | 2_1:-19660681 | None:intergenic |
| TTGAGTCTAAATTGTCTGCA+GGG | 0.579973 | 2_1:+19660645 | Msa0200080:CDS |
| TACAACTACAGCATAGTTGG+AGG | 0.596062 | 2_1:+19660587 | Msa0200080:CDS |
| TGATGCTGCACCAAGTGAAG+AGG | 0.603594 | 2_1:+19660718 | Msa0200080:CDS |
| TTGTCTGCAGGGCCAGATGG+AGG | 0.618761 | 2_1:+19660656 | Msa0200080:CDS |
| AACTACAGCATAGTTGGAGG+TGG | 0.623337 | 2_1:+19660590 | Msa0200080:CDS |
| ATCAAGGGTGGCAAAGCTAG+GGG | 0.634094 | 2_1:+19660743 | Msa0200080:CDS |
| AGCAGGAGCTACAATAGATG+TGG | 0.641681 | 2_1:-19659832 | None:intergenic |
| ACTGTGAAATACTTCACCAA+AGG | 0.653868 | 2_1:+19660695 | Msa0200080:CDS |
| CCAAGTGAAGAGGAAATCAA+GGG | 0.664848 | 2_1:+19660728 | Msa0200080:CDS |
| AGTGAAGAGGAAATCAAGGG+TGG | 0.695634 | 2_1:+19660731 | Msa0200080:CDS |
| TGGTGGACTTCCAGACACTG+TGG | 0.725966 | 2_1:+19660610 | Msa0200080:CDS |
| GAAATTGTTGAAGGAAACGG+TGG | 0.726108 | 2_1:+19659927 | Msa0200080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATAATAAAAGAAAAG+AGG | - | chr2_1:19660346-19660365 | None:intergenic | 10.0% |
| !!! | TCTTTTCTTTTATTATATAT+TGG | + | chr2_1:19660345-19660364 | Msa0200080:intron | 10.0% |
| !! | AATATATAATAAAAGAAAAG+AGG | - | chr2_1:19660346-19660365 | None:intergenic | 10.0% |
| !!! | TCTTTTCTTTTATTATATAT+TGG | + | chr2_1:19660345-19660364 | Msa0200080:intron | 10.0% |
| !!! | GTGTTATTATATACATTTAA+TGG | + | chr2_1:19660211-19660230 | Msa0200080:intron | 15.0% |
| !!! | CTTTTAAAAAATAGTTTTTC+TGG | - | chr2_1:19660280-19660299 | None:intergenic | 15.0% |
| !!! | GTGTTATTATATACATTTAA+TGG | + | chr2_1:19660211-19660230 | Msa0200080:intron | 15.0% |
| !!! | CTTTTAAAAAATAGTTTTTC+TGG | - | chr2_1:19660280-19660299 | None:intergenic | 15.0% |
| !! | ATATATGTGAAAAATTGAAG+TGG | + | chr2_1:19659993-19660012 | Msa0200080:intron | 20.0% |
| !! | AAGATACATAACATAAATTG+TGG | + | chr2_1:19660141-19660160 | Msa0200080:intron | 20.0% |
| !! | ATATATGTGAAAAATTGAAG+TGG | + | chr2_1:19659993-19660012 | Msa0200080:intron | 20.0% |
| !! | AAGATACATAACATAAATTG+TGG | + | chr2_1:19660141-19660160 | Msa0200080:intron | 20.0% |
| ! | AACAATTTCAATACTTTGGA+TGG | - | chr2_1:19659916-19659935 | None:intergenic | 25.0% |
| ! | CTTCAACAATTTCAATACTT+TGG | - | chr2_1:19659920-19659939 | None:intergenic | 25.0% |
| !!! | CAAAGTATTGAAATTGTTGA+AGG | + | chr2_1:19659918-19659937 | Msa0200080:CDS | 25.0% |
| ! | ATTGAAATTGTTGAAGGAAA+CGG | + | chr2_1:19659924-19659943 | Msa0200080:CDS | 25.0% |
| !!! | AATTAACCGTCTTTATTTTG+AGG | - | chr2_1:19660082-19660101 | None:intergenic | 25.0% |
| ! | ATACATAACATAAATTGTGG+AGG | + | chr2_1:19660144-19660163 | Msa0200080:intron | 25.0% |
| ! | AACAAGAATCAAACATTTGA+TGG | - | chr2_1:19660306-19660325 | None:intergenic | 25.0% |
| ! | TTTCACAATTACTAACATGA+TGG | - | chr2_1:19660490-19660509 | None:intergenic | 25.0% |
| ! | AACAATTTCAATACTTTGGA+TGG | - | chr2_1:19659916-19659935 | None:intergenic | 25.0% |
| ! | CTTCAACAATTTCAATACTT+TGG | - | chr2_1:19659920-19659939 | None:intergenic | 25.0% |
| !!! | CAAAGTATTGAAATTGTTGA+AGG | + | chr2_1:19659918-19659937 | Msa0200080:CDS | 25.0% |
| ! | ATTGAAATTGTTGAAGGAAA+CGG | + | chr2_1:19659924-19659943 | Msa0200080:CDS | 25.0% |
| !!! | AATTAACCGTCTTTATTTTG+AGG | - | chr2_1:19660082-19660101 | None:intergenic | 25.0% |
| ! | ATACATAACATAAATTGTGG+AGG | + | chr2_1:19660144-19660163 | Msa0200080:intron | 25.0% |
| ! | AACAAGAATCAAACATTTGA+TGG | - | chr2_1:19660306-19660325 | None:intergenic | 25.0% |
| ! | TTTCACAATTACTAACATGA+TGG | - | chr2_1:19660490-19660509 | None:intergenic | 25.0% |
| TTCTGATAACCTTATTCCAA+AGG | + | chr2_1:19659881-19659900 | Msa0200080:CDS | 30.0% | |
| !! | CATCAATAACCTTTGGAATA+AGG | - | chr2_1:19659893-19659912 | None:intergenic | 30.0% |
| AACGAAAGTAAGTTTCTTGA+TGG | - | chr2_1:19659961-19659980 | None:intergenic | 30.0% | |
| AAGAAACTTACTTTCGTTGA+AGG | + | chr2_1:19659963-19659982 | Msa0200080:CDS | 30.0% | |
| TTCATGCAGTGAAAATTGTT+TGG | - | chr2_1:19660051-19660070 | None:intergenic | 30.0% | |
| CCATATCCTCAAAATAAAGA+CGG | + | chr2_1:19660073-19660092 | Msa0200080:intron | 30.0% | |
| !!! | AACAGTTTTTTTTACACCGA+CGG | - | chr2_1:19660244-19660263 | None:intergenic | 30.0% |
| ! | AAAGTATGATTTGCACAAAG+TGG | + | chr2_1:19660538-19660557 | Msa0200080:CDS | 30.0% |
| TTCTGATAACCTTATTCCAA+AGG | + | chr2_1:19659881-19659900 | Msa0200080:CDS | 30.0% | |
| !! | CATCAATAACCTTTGGAATA+AGG | - | chr2_1:19659893-19659912 | None:intergenic | 30.0% |
| AACGAAAGTAAGTTTCTTGA+TGG | - | chr2_1:19659961-19659980 | None:intergenic | 30.0% | |
| AAGAAACTTACTTTCGTTGA+AGG | + | chr2_1:19659963-19659982 | Msa0200080:CDS | 30.0% | |
| TTCATGCAGTGAAAATTGTT+TGG | - | chr2_1:19660051-19660070 | None:intergenic | 30.0% | |
| CCATATCCTCAAAATAAAGA+CGG | + | chr2_1:19660073-19660092 | Msa0200080:intron | 30.0% | |
| !!! | AACAGTTTTTTTTACACCGA+CGG | - | chr2_1:19660244-19660263 | None:intergenic | 30.0% |
| ! | AAAGTATGATTTGCACAAAG+TGG | + | chr2_1:19660538-19660557 | Msa0200080:CDS | 30.0% |
| ! | AGTAAGTTTCTTGATGGTTC+CGG | - | chr2_1:19659955-19659974 | None:intergenic | 35.0% |
| ATGTGAAAAATTGAAGTGGC+AGG | + | chr2_1:19659997-19660016 | Msa0200080:intron | 35.0% | |
| !!! | CCGTCTTTATTTTGAGGATA+TGG | - | chr2_1:19660076-19660095 | None:intergenic | 35.0% |
| ATTTAATGGAGATCTACCGT+CGG | + | chr2_1:19660225-19660244 | Msa0200080:intron | 35.0% | |
| !! | TAACATGATGGACATTCACT+TGG | - | chr2_1:19660478-19660497 | None:intergenic | 35.0% |
| GAAACGAATCAATTATGTGC+AGG | + | chr2_1:19660506-19660525 | Msa0200080:intron | 35.0% | |
| TGCAGACAATTTAGACTCAA+AGG | - | chr2_1:19660645-19660664 | None:intergenic | 35.0% | |
| TTTGAGTCTAAATTGTCTGC+AGG | + | chr2_1:19660644-19660663 | Msa0200080:CDS | 35.0% | |
| TTGAGTCTAAATTGTCTGCA+GGG | + | chr2_1:19660645-19660664 | Msa0200080:CDS | 35.0% | |
| ACTGTGAAATACTTCACCAA+AGG | + | chr2_1:19660695-19660714 | Msa0200080:CDS | 35.0% | |
| ! | AGTAAGTTTCTTGATGGTTC+CGG | - | chr2_1:19659955-19659974 | None:intergenic | 35.0% |
| ATGTGAAAAATTGAAGTGGC+AGG | + | chr2_1:19659997-19660016 | Msa0200080:intron | 35.0% | |
| !!! | CCGTCTTTATTTTGAGGATA+TGG | - | chr2_1:19660076-19660095 | None:intergenic | 35.0% |
| ATTTAATGGAGATCTACCGT+CGG | + | chr2_1:19660225-19660244 | Msa0200080:intron | 35.0% | |
| !! | TAACATGATGGACATTCACT+TGG | - | chr2_1:19660478-19660497 | None:intergenic | 35.0% |
| GAAACGAATCAATTATGTGC+AGG | + | chr2_1:19660506-19660525 | Msa0200080:intron | 35.0% | |
| TGCAGACAATTTAGACTCAA+AGG | - | chr2_1:19660645-19660664 | None:intergenic | 35.0% | |
| TTTGAGTCTAAATTGTCTGC+AGG | + | chr2_1:19660644-19660663 | Msa0200080:CDS | 35.0% | |
| TTGAGTCTAAATTGTCTGCA+GGG | + | chr2_1:19660645-19660664 | Msa0200080:CDS | 35.0% | |
| ACTGTGAAATACTTCACCAA+AGG | + | chr2_1:19660695-19660714 | Msa0200080:CDS | 35.0% | |
| ! | AGAGCTTTGTAAAGTCTAGC+AGG | - | chr2_1:19659852-19659871 | None:intergenic | 40.0% |
| TGGATGGCATCAATAACCTT+TGG | - | chr2_1:19659900-19659919 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_1:19659927-19659946 | Msa0200080:CDS | 40.0% | |
| GACATTCACTTGGTTCAACT+AGG | - | chr2_1:19660468-19660487 | None:intergenic | 40.0% | |
| ACGAATCAATTATGTGCAGG+TGG | + | chr2_1:19660509-19660528 | Msa0200080:intron | 40.0% | |
| GCTTACAACTACAGCATAGT+TGG | + | chr2_1:19660584-19660603 | Msa0200080:CDS | 40.0% | |
| TACAACTACAGCATAGTTGG+AGG | + | chr2_1:19660587-19660606 | Msa0200080:CDS | 40.0% | |
| TTTCACAGTAAGCTTTGCAG+TGG | - | chr2_1:19660684-19660703 | None:intergenic | 40.0% | |
| ACCAAGTGAAGAGGAAATCA+AGG | + | chr2_1:19660727-19660746 | Msa0200080:CDS | 40.0% | |
| CCAAGTGAAGAGGAAATCAA+GGG | + | chr2_1:19660728-19660747 | Msa0200080:CDS | 40.0% | |
| ! | AGAGCTTTGTAAAGTCTAGC+AGG | - | chr2_1:19659852-19659871 | None:intergenic | 40.0% |
| TGGATGGCATCAATAACCTT+TGG | - | chr2_1:19659900-19659919 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_1:19659927-19659946 | Msa0200080:CDS | 40.0% | |
| GACATTCACTTGGTTCAACT+AGG | - | chr2_1:19660468-19660487 | None:intergenic | 40.0% | |
| ACGAATCAATTATGTGCAGG+TGG | + | chr2_1:19660509-19660528 | Msa0200080:intron | 40.0% | |
| GCTTACAACTACAGCATAGT+TGG | + | chr2_1:19660584-19660603 | Msa0200080:CDS | 40.0% | |
| TACAACTACAGCATAGTTGG+AGG | + | chr2_1:19660587-19660606 | Msa0200080:CDS | 40.0% | |
| TTTCACAGTAAGCTTTGCAG+TGG | - | chr2_1:19660684-19660703 | None:intergenic | 40.0% | |
| ACCAAGTGAAGAGGAAATCA+AGG | + | chr2_1:19660727-19660746 | Msa0200080:CDS | 40.0% | |
| CCAAGTGAAGAGGAAATCAA+GGG | + | chr2_1:19660728-19660747 | Msa0200080:CDS | 40.0% | |
| AGCAGGAGCTACAATAGATG+TGG | - | chr2_1:19659835-19659854 | None:intergenic | 45.0% | |
| AACTACAGCATAGTTGGAGG+TGG | + | chr2_1:19660590-19660609 | Msa0200080:CDS | 45.0% | |
| CCCTTGATTTCCTCTTCACT+TGG | - | chr2_1:19660731-19660750 | None:intergenic | 45.0% | |
| AGTGAAGAGGAAATCAAGGG+TGG | + | chr2_1:19660731-19660750 | Msa0200080:CDS | 45.0% | |
| AAATCAAGGGTGGCAAAGCT+AGG | + | chr2_1:19660741-19660760 | Msa0200080:CDS | 45.0% | |
| AATCAAGGGTGGCAAAGCTA+GGG | + | chr2_1:19660742-19660761 | Msa0200080:CDS | 45.0% | |
| !! | TAGGGGTGATGGTCTTTTCA+AGG | + | chr2_1:19660760-19660779 | Msa0200080:CDS | 45.0% |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_1:19660770-19660789 | Msa0200080:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_1:19660781-19660800 | Msa0200080:CDS | 45.0% |
| AGCAGGAGCTACAATAGATG+TGG | - | chr2_1:19659835-19659854 | None:intergenic | 45.0% | |
| AACTACAGCATAGTTGGAGG+TGG | + | chr2_1:19660590-19660609 | Msa0200080:CDS | 45.0% | |
| CCCTTGATTTCCTCTTCACT+TGG | - | chr2_1:19660731-19660750 | None:intergenic | 45.0% | |
| AGTGAAGAGGAAATCAAGGG+TGG | + | chr2_1:19660731-19660750 | Msa0200080:CDS | 45.0% | |
| AAATCAAGGGTGGCAAAGCT+AGG | + | chr2_1:19660741-19660760 | Msa0200080:CDS | 45.0% | |
| AATCAAGGGTGGCAAAGCTA+GGG | + | chr2_1:19660742-19660761 | Msa0200080:CDS | 45.0% | |
| !! | TAGGGGTGATGGTCTTTTCA+AGG | + | chr2_1:19660760-19660779 | Msa0200080:CDS | 45.0% |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_1:19660770-19660789 | Msa0200080:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_1:19660781-19660800 | Msa0200080:CDS | 45.0% |
| TACAGCATAGTTGGAGGTGG+TGG | + | chr2_1:19660593-19660612 | Msa0200080:CDS | 50.0% | |
| GAGATCTTCTCCACAGTGTC+TGG | - | chr2_1:19660623-19660642 | None:intergenic | 50.0% | |
| AAATTGTCTGCAGGGCCAGA+TGG | + | chr2_1:19660653-19660672 | Msa0200080:CDS | 50.0% | |
| TTTGCAGTGGATCCTCCATC+TGG | - | chr2_1:19660671-19660690 | None:intergenic | 50.0% | |
| !! | ACTTGGTGCAGCATCACCTT+TGG | - | chr2_1:19660714-19660733 | None:intergenic | 50.0% |
| TGATGCTGCACCAAGTGAAG+AGG | + | chr2_1:19660718-19660737 | Msa0200080:CDS | 50.0% | |
| ATCAAGGGTGGCAAAGCTAG+GGG | + | chr2_1:19660743-19660762 | Msa0200080:CDS | 50.0% | |
| TACAGCATAGTTGGAGGTGG+TGG | + | chr2_1:19660593-19660612 | Msa0200080:CDS | 50.0% | |
| GAGATCTTCTCCACAGTGTC+TGG | - | chr2_1:19660623-19660642 | None:intergenic | 50.0% | |
| AAATTGTCTGCAGGGCCAGA+TGG | + | chr2_1:19660653-19660672 | Msa0200080:CDS | 50.0% | |
| TTTGCAGTGGATCCTCCATC+TGG | - | chr2_1:19660671-19660690 | None:intergenic | 50.0% | |
| !! | ACTTGGTGCAGCATCACCTT+TGG | - | chr2_1:19660714-19660733 | None:intergenic | 50.0% |
| TGATGCTGCACCAAGTGAAG+AGG | + | chr2_1:19660718-19660737 | Msa0200080:CDS | 50.0% | |
| ATCAAGGGTGGCAAAGCTAG+GGG | + | chr2_1:19660743-19660762 | Msa0200080:CDS | 50.0% | |
| GTTGAAGGAAACGGTGGTGC+CGG | + | chr2_1:19659933-19659952 | Msa0200080:CDS | 55.0% | |
| !! | TGGTGGACTTCCAGACACTG+TGG | + | chr2_1:19660610-19660629 | Msa0200080:CDS | 55.0% |
| GTTGAAGGAAACGGTGGTGC+CGG | + | chr2_1:19659933-19659952 | Msa0200080:CDS | 55.0% | |
| !! | TGGTGGACTTCCAGACACTG+TGG | + | chr2_1:19660610-19660629 | Msa0200080:CDS | 55.0% |
| TTGTCTGCAGGGCCAGATGG+AGG | + | chr2_1:19660656-19660675 | Msa0200080:CDS | 60.0% | |
| GGTGGCAAAGCTAGGGGTGA+TGG | + | chr2_1:19660749-19660768 | Msa0200080:CDS | 60.0% | |
| TTGTCTGCAGGGCCAGATGG+AGG | + | chr2_1:19660656-19660675 | Msa0200080:CDS | 60.0% | |
| GGTGGCAAAGCTAGGGGTGA+TGG | + | chr2_1:19660749-19660768 | Msa0200080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 19659804 | 19660820 | 19659804 | ID=Msa0200080;Name=Msa0200080 |
| chr2_1 | mRNA | 19659804 | 19660820 | 19659804 | ID=Msa0200080-mRNA-1;Parent=Msa0200080;Name=Msa0200080-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|157 |
| chr2_1 | exon | 19659804 | 19659984 | 19659804 | ID=Msa0200080-mRNA-1:exon:8211;Parent=Msa0200080-mRNA-1 |
| chr2_1 | exon | 19660528 | 19660820 | 19660528 | ID=Msa0200080-mRNA-1:exon:8212;Parent=Msa0200080-mRNA-1 |
| chr2_1 | CDS | 19659804 | 19659984 | 19659804 | ID=Msa0200080-mRNA-1:cds;Parent=Msa0200080-mRNA-1 |
| chr2_1 | CDS | 19660528 | 19660820 | 19660528 | ID=Msa0200080-mRNA-1:cds;Parent=Msa0200080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
