Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242710 | SNQ45214.1 | 98.101 | 158 | 3 | 0 | 1 | 158 | 1 | 158 | 2.61e-105 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242710 | sp|P14710|DRR3_PEA | 87.975 | 158 | 19 | 0 | 1 | 158 | 1 | 158 | 5.13e-98 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242710 | A0A238U3J0 | 98.101 | 158 | 3 | 0 | 1 | 158 | 1 | 158 | 1.25e-105 | 308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046680 | Msa0242710 | 0.828908 | 6.919696e-55 | -8.615850e-47 |
| Msa0129290 | Msa0242710 | 0.867609 | 1.206672e-65 | -8.615850e-47 |
| Msa0138870 | Msa0242710 | 0.816338 | 5.823168e-52 | -8.615850e-47 |
| Msa0200080 | Msa0242710 | 0.823364 | 1.441008e-53 | -8.615850e-47 |
| Msa0200090 | Msa0242710 | 0.901781 | 1.893094e-78 | -8.615850e-47 |
| Msa0242710 | Msa0242720 | 0.846450 | 2.155227e-59 | -8.615850e-47 |
| Msa0242710 | Msa0280930 | 0.827506 | 1.506419e-54 | -8.615850e-47 |
| Msa0242710 | Msa0280940 | 0.819498 | 1.125439e-52 | -8.615850e-47 |
| Msa0242710 | Msa0280990 | 0.924661 | 5.227813e-90 | -8.615850e-47 |
| Msa0242710 | Msa0281000 | 0.813625 | 2.328779e-51 | -8.615850e-47 |
| Msa0242710 | Msa0320130 | 0.813875 | 2.050579e-51 | -8.615850e-47 |
| Msa0242710 | Msa0320140 | 0.818731 | 1.682066e-52 | -8.615850e-47 |
| Msa0242710 | Msa0320160 | 0.950573 | 1.245449e-108 | -8.615850e-47 |
| Msa0242710 | Msa0421080 | 0.847638 | 1.018699e-59 | -8.615850e-47 |
| Msa0242710 | Msa0466850 | 0.829338 | 5.444135e-55 | -8.615850e-47 |
| Msa0242710 | Msa0480530 | 0.801167 | 1.023053e-48 | -8.615850e-47 |
| Msa0242710 | Msa0513670 | 0.830429 | 2.951869e-55 | -8.615850e-47 |
| Msa0242710 | Msa0537210 | 0.805631 | 1.216003e-49 | -8.615850e-47 |
| Msa0242710 | Msa0561110 | 0.802092 | 6.611249e-49 | -8.615850e-47 |
| Msa0242710 | Msa0588730 | 0.836215 | 1.066299e-56 | -8.615850e-47 |
| Msa0242710 | Msa0629030 | 0.868477 | 6.343975e-66 | -8.615850e-47 |
| Msa0242710 | Msa0629040 | 0.808682 | 2.746636e-50 | -8.615850e-47 |
| Msa0242710 | Msa0652610 | 0.820932 | 5.282722e-53 | -8.615850e-47 |
| Msa0242710 | Msa0666580 | 0.865012 | 8.040778e-65 | -8.615850e-47 |
| Msa0242710 | Msa0716620 | 0.867887 | 9.823075e-66 | -8.615850e-47 |
| Msa0242710 | Msa0728230 | 0.814830 | 1.261873e-51 | -8.615850e-47 |
| Msa0242710 | Msa0728570 | 0.813547 | 2.421929e-51 | -8.615850e-47 |
| Msa0242710 | Msa0744540 | 0.809028 | 2.317056e-50 | -8.615850e-47 |
| Msa0242710 | Msa0753410 | 0.800938 | 1.139264e-48 | -8.615850e-47 |
| Msa0242710 | Msa0772350 | 0.856131 | 3.958475e-62 | -8.615850e-47 |
| Msa0242710 | Msa0782890 | 0.801552 | 8.532502e-49 | -8.615850e-47 |
| Msa0242710 | Msa0794200 | 0.805165 | 1.522825e-49 | -8.615850e-47 |
| Msa0242710 | Msa0826360 | 0.831699 | 1.439776e-55 | -8.615850e-47 |
| Msa0242710 | Msa0826370 | 0.816229 | 6.158557e-52 | -8.615850e-47 |
| Msa0242710 | Msa0837550 | 0.865750 | 4.707808e-65 | -8.615850e-47 |
| Msa0242710 | Msa0865810 | 0.806497 | 7.993742e-50 | -8.615850e-47 |
| Msa0242710 | Msa0865830 | 0.808350 | 3.233563e-50 | -8.615850e-47 |
| Msa0242710 | Msa0945320 | 0.823488 | 1.348216e-53 | -8.615850e-47 |
| Msa0242710 | Msa0976400 | 0.806606 | 7.579871e-50 | -8.615850e-47 |
| Msa0242710 | Msa0985380 | 0.826503 | 2.617430e-54 | -8.615850e-47 |
| Msa0242710 | Msa1023430 | 0.857616 | 1.445945e-62 | -8.615850e-47 |
| Msa0242710 | Msa1061840 | 0.824119 | 9.592915e-54 | -8.615850e-47 |
| Msa0242710 | Msa1071350 | 0.811465 | 6.906839e-51 | -8.615850e-47 |
| Msa0242710 | Msa1107510 | 0.843995 | 9.943477e-59 | -8.615850e-47 |
| Msa0242710 | Msa1110900 | 0.826033 | 3.387552e-54 | -8.615850e-47 |
| Msa0242710 | Msa1151070 | 0.859374 | 4.322765e-63 | -8.615850e-47 |
| Msa0242710 | Msa1154570 | 0.802315 | 5.946635e-49 | -8.615850e-47 |
| Msa0242710 | Msa1157200 | 0.800054 | 1.725409e-48 | -8.615850e-47 |
| Msa0242710 | Msa1218190 | 0.822718 | 2.039474e-53 | -8.615850e-47 |
| Msa0242710 | Msa1398120 | 0.823542 | 1.309729e-53 | -8.615850e-47 |
| Msa0242710 | Msa1459930 | 0.816799 | 4.590776e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242710 | MtrunA17_Chr2g0295064 | 96.835 | 158 | 5 | 0 | 1 | 158 | 68 | 225 | 8.72e-108 | 306 |
| Msa0242710 | MtrunA17_Chr2g0295051 | 89.172 | 157 | 17 | 0 | 1 | 157 | 1 | 157 | 1.55e-99 | 283 |
| Msa0242710 | MtrunA17_Chr2g0295041 | 87.342 | 158 | 20 | 0 | 1 | 158 | 1 | 158 | 1.41e-97 | 278 |
| Msa0242710 | MtrunA17_Chr2g0295021 | 85.350 | 157 | 23 | 0 | 1 | 157 | 1 | 157 | 1.92e-94 | 270 |
| Msa0242710 | MtrunA17_Chr2g0295001 | 85.350 | 157 | 23 | 0 | 1 | 157 | 1 | 157 | 1.92e-94 | 270 |
| Msa0242710 | MtrunA17_Chr4g0067951 | 75.949 | 158 | 38 | 0 | 1 | 158 | 1 | 158 | 3.05e-84 | 244 |
| Msa0242710 | MtrunA17_Chr6g0462311 | 74.684 | 158 | 40 | 0 | 1 | 158 | 1 | 158 | 9.44e-83 | 240 |
| Msa0242710 | MtrunA17_Chr6g0462291 | 73.571 | 140 | 37 | 0 | 1 | 140 | 1 | 140 | 6.94e-70 | 208 |
| Msa0242710 | MtrunA17_Chr2g0295141 | 66.242 | 157 | 53 | 0 | 1 | 157 | 1 | 157 | 9.86e-70 | 207 |
| Msa0242710 | MtrunA17_Chr2g0295091 | 64.331 | 157 | 56 | 0 | 1 | 157 | 1 | 157 | 3.81e-67 | 201 |
| Msa0242710 | MtrunA17_Chr2g0295104 | 63.694 | 157 | 57 | 0 | 1 | 157 | 1 | 157 | 3.97e-66 | 198 |
| Msa0242710 | MtrunA17_Chr2g0295124 | 63.057 | 157 | 58 | 0 | 1 | 157 | 1 | 157 | 6.88e-64 | 192 |
| Msa0242710 | MtrunA17_Chr2g0295081 | 58.599 | 157 | 65 | 0 | 1 | 157 | 1 | 157 | 1.03e-61 | 187 |
| Msa0242710 | MtrunA17_Chr2g0295211 | 39.103 | 156 | 94 | 1 | 1 | 155 | 1 | 156 | 7.21e-37 | 124 |
| Msa0242710 | MtrunA17_Chr4g0067921 | 45.062 | 162 | 82 | 5 | 1 | 158 | 1 | 159 | 4.28e-36 | 122 |
| Msa0242710 | MtrunA17_Chr4g0067841 | 39.744 | 156 | 93 | 1 | 1 | 155 | 1 | 156 | 9.58e-36 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATCCAGTGTGCTTAATT+TGG | 0.180482 | 2_2:+19070379 | Msa0242710:three_prime_UTR |
| AACAATTTCAACACTCTTGA+TGG | 0.245294 | 2_2:-19069771 | None:intergenic |
| TGATGGCATCAATAACCTTT+GGG | 0.301288 | 2_2:-19069754 | None:intergenic |
| TTGATGGCATCAATAACCTT+TGG | 0.345179 | 2_2:-19069755 | None:intergenic |
| GGCTATAGAGGGTTACTGTT+TGG | 0.394448 | 2_2:+19070279 | Msa0242710:CDS |
| CTTAGTAGATGATGCTAACT+TGG | 0.397103 | 2_2:+19070060 | Msa0242710:CDS |
| GCTTACAACTACAGCATTGT+TGG | 0.405129 | 2_2:+19070082 | Msa0242710:CDS |
| TTTGCAATGGATCCTCCATT+TGG | 0.420662 | 2_2:-19070166 | None:intergenic |
| TATATGCTTTAGTTGTAGTC+AGG | 0.421813 | 2_2:-19070307 | None:intergenic |
| TACAGCATTGTTGGAGGTGT+TGG | 0.427537 | 2_2:+19070091 | Msa0242710:CDS |
| GAGATCTTCTCTATTGTGTC+TGG | 0.431898 | 2_2:-19070118 | None:intergenic |
| CATCAATAACCTTTGGGGTA+AGG | 0.433870 | 2_2:-19069748 | None:intergenic |
| AAGAGTGTTGAAATTGTTGA+AGG | 0.434561 | 2_2:+19069776 | Msa0242710:CDS |
| ATATCCAGTGTGCTTAATTT+GGG | 0.434922 | 2_2:+19070380 | Msa0242710:three_prime_UTR |
| CACTTTGTGCAAGACATGCT+TGG | 0.461268 | 2_2:-19070035 | None:intergenic |
| AGAGCTTTGTAAAGTGTAGC+AGG | 0.477836 | 2_2:-19069707 | None:intergenic |
| AAATTGTCTGCAGGTCCAAA+TGG | 0.485800 | 2_2:+19070151 | Msa0242710:CDS |
| ACTTTACAAAGCTCTAGTTA+AGG | 0.493500 | 2_2:+19069715 | Msa0242710:CDS |
| AATAGAGAAGATCTCATTTG+AGG | 0.494265 | 2_2:+19070126 | Msa0242710:CDS |
| CTCTTGAGTTCCTCTTCACT+AGG | 0.501934 | 2_2:-19070226 | None:intergenic |
| AATGTGAAATACTTCACAAA+AGG | 0.503374 | 2_2:+19070193 | Msa0242710:CDS |
| TTTCACATTAAGCTTTGCAA+TGG | 0.512266 | 2_2:-19070179 | None:intergenic |
| ACTCACACTTAAGCAACAAA+AGG | 0.514579 | 2_2:-19070438 | None:intergenic |
| ACTTAAGCAACAAAAGGAAA+GGG | 0.517656 | 2_2:-19070432 | None:intergenic |
| AAACTTGTATAAGGAATATG+TGG | 0.518683 | 2_2:-19070517 | None:intergenic |
| GTTGAAGGAAACGGTGGTGC+CGG | 0.528042 | 2_2:+19069791 | Msa0242710:CDS |
| ACTCAAGAGTGGCAAAGCTA+AGG | 0.529920 | 2_2:+19070240 | Msa0242710:CDS |
| CTCAAGAGTGGCAAAGCTAA+GGG | 0.532020 | 2_2:+19070241 | Msa0242710:CDS |
| TGATAATGTATTAAAATGCT+AGG | 0.533186 | 2_2:-19069637 | None:intergenic |
| TTTGAGGCTAAATTGTCTGC+AGG | 0.535432 | 2_2:+19070142 | Msa0242710:CDS |
| TAAGAAATAACAAATAATGA+TGG | 0.542364 | 2_2:-19069614 | None:intergenic |
| GTTGAAATTGTTGAAGGAAA+CGG | 0.548798 | 2_2:+19069782 | Msa0242710:CDS |
| AGCAGGAGCTACAGTGGAGG+TGG | 0.552452 | 2_2:-19069690 | None:intergenic |
| CTTAAGCAACAAAAGGAAAG+GGG | 0.552624 | 2_2:-19070431 | None:intergenic |
| AAGTGTAGCAGGAGCTACAG+TGG | 0.556963 | 2_2:-19069696 | None:intergenic |
| CACTTAAGCAACAAAAGGAA+AGG | 0.564496 | 2_2:-19070433 | None:intergenic |
| TACAACTACAGCATTGTTGG+AGG | 0.566488 | 2_2:+19070085 | Msa0242710:CDS |
| GATGGCATCAATAACCTTTG+GGG | 0.578696 | 2_2:-19069753 | None:intergenic |
| CAAGCATGTCTTGCACAAAG+TGG | 0.581918 | 2_2:+19070036 | Msa0242710:CDS |
| AGTGGCAAAGCTAAGGGTGA+TGG | 0.593000 | 2_2:+19070247 | Msa0242710:CDS |
| TTCTGACAACCTTACCCCAA+AGG | 0.596498 | 2_2:+19069739 | Msa0242710:CDS |
| AGATGTTACTCCTAGTGAAG+AGG | 0.628737 | 2_2:+19070216 | Msa0242710:CDS |
| TTGTCTGCAGGTCCAAATGG+AGG | 0.646240 | 2_2:+19070154 | Msa0242710:CDS |
| GGCACCCAAATTAAGCACAC+TGG | 0.647847 | 2_2:-19070384 | None:intergenic |
| TGTAGCAGGAGCTACAGTGG+AGG | 0.673221 | 2_2:-19069693 | None:intergenic |
| AGTGAAGAGGAACTCAAGAG+TGG | 0.684104 | 2_2:+19070229 | Msa0242710:CDS |
| TTAAGCAACAAAAGGAAAGG+GGG | 0.684119 | 2_2:-19070430 | None:intergenic |
| GAAATTGTTGAAGGAAACGG+TGG | 0.749751 | 2_2:+19069785 | Msa0242710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATACATTATCATCA+TGG | + | chr2_2:19069643-19069662 | Msa0242710:exon | 15.0% |
| !!! | TTTTAATACATTATCATCAT+GGG | + | chr2_2:19069644-19069663 | Msa0242710:exon | 15.0% |
| !!! | ATTTTAATACATTATCATCA+TGG | + | chr2_2:19069643-19069662 | Msa0242710:exon | 15.0% |
| !!! | TTTTAATACATTATCATCAT+GGG | + | chr2_2:19069644-19069663 | Msa0242710:exon | 15.0% |
| !!! | TGATAATGTATTAAAATGCT+AGG | - | chr2_2:19069640-19069659 | None:intergenic | 20.0% |
| !! | GTAAGAAATAACAAATAATG+AGG | - | chr2_2:19069618-19069637 | None:intergenic | 20.0% |
| !!! | TGATAATGTATTAAAATGCT+AGG | - | chr2_2:19069640-19069659 | None:intergenic | 20.0% |
| ! | AATGTGAAATACTTCACAAA+AGG | + | chr2_2:19070193-19070212 | Msa0242710:CDS | 25.0% |
| ! | AGGAAAAATGAGAATTACAT+TGG | - | chr2_2:19070408-19070427 | None:intergenic | 25.0% |
| ! | AATGTGAAATACTTCACAAA+AGG | + | chr2_2:19070193-19070212 | Msa0242710:CDS | 25.0% |
| ! | AGGAAAAATGAGAATTACAT+TGG | - | chr2_2:19070408-19070427 | None:intergenic | 25.0% |
| ! | ACTTTACAAAGCTCTAGTTA+AGG | + | chr2_2:19069715-19069734 | Msa0242710:CDS | 30.0% |
| AACAATTTCAACACTCTTGA+TGG | - | chr2_2:19069774-19069793 | None:intergenic | 30.0% | |
| !! | AAGAGTGTTGAAATTGTTGA+AGG | + | chr2_2:19069776-19069795 | Msa0242710:CDS | 30.0% |
| GTTGAAATTGTTGAAGGAAA+CGG | + | chr2_2:19069782-19069801 | Msa0242710:CDS | 30.0% | |
| !!! | TGTGAGTTTTTTGATAGTTC+CGG | - | chr2_2:19069813-19069832 | None:intergenic | 30.0% |
| AAAAAACTCACATTCGTTGA+AGG | + | chr2_2:19069821-19069840 | Msa0242710:CDS | 30.0% | |
| CTTCAAATATGAAGAGATGT+AGG | - | chr2_2:19069962-19069981 | None:intergenic | 30.0% | |
| TGATGTTTGTGATTGTGAAA+CGG | + | chr2_2:19069991-19070010 | Msa0242710:intron | 30.0% | |
| AATAGAGAAGATCTCATTTG+AGG | + | chr2_2:19070126-19070145 | Msa0242710:CDS | 30.0% | |
| TTTCACATTAAGCTTTGCAA+TGG | - | chr2_2:19070182-19070201 | None:intergenic | 30.0% | |
| TATATGCTTTAGTTGTAGTC+AGG | - | chr2_2:19070310-19070329 | None:intergenic | 30.0% | |
| ATATCCAGTGTGCTTAATTT+GGG | + | chr2_2:19070380-19070399 | Msa0242710:three_prime_UTR | 30.0% | |
| ACTTAAGCAACAAAAGGAAA+GGG | - | chr2_2:19070435-19070454 | None:intergenic | 30.0% | |
| ! | ACTTTACAAAGCTCTAGTTA+AGG | + | chr2_2:19069715-19069734 | Msa0242710:CDS | 30.0% |
| AACAATTTCAACACTCTTGA+TGG | - | chr2_2:19069774-19069793 | None:intergenic | 30.0% | |
| !! | AAGAGTGTTGAAATTGTTGA+AGG | + | chr2_2:19069776-19069795 | Msa0242710:CDS | 30.0% |
| GTTGAAATTGTTGAAGGAAA+CGG | + | chr2_2:19069782-19069801 | Msa0242710:CDS | 30.0% | |
| !!! | TGTGAGTTTTTTGATAGTTC+CGG | - | chr2_2:19069813-19069832 | None:intergenic | 30.0% |
| AAAAAACTCACATTCGTTGA+AGG | + | chr2_2:19069821-19069840 | Msa0242710:CDS | 30.0% | |
| CTTCAAATATGAAGAGATGT+AGG | - | chr2_2:19069962-19069981 | None:intergenic | 30.0% | |
| TGATGTTTGTGATTGTGAAA+CGG | + | chr2_2:19069991-19070010 | Msa0242710:intron | 30.0% | |
| AATAGAGAAGATCTCATTTG+AGG | + | chr2_2:19070126-19070145 | Msa0242710:CDS | 30.0% | |
| TTTCACATTAAGCTTTGCAA+TGG | - | chr2_2:19070182-19070201 | None:intergenic | 30.0% | |
| TATATGCTTTAGTTGTAGTC+AGG | - | chr2_2:19070310-19070329 | None:intergenic | 30.0% | |
| ATATCCAGTGTGCTTAATTT+GGG | + | chr2_2:19070380-19070399 | Msa0242710:three_prime_UTR | 30.0% | |
| ACTTAAGCAACAAAAGGAAA+GGG | - | chr2_2:19070435-19070454 | None:intergenic | 30.0% | |
| TGATGGCATCAATAACCTTT+GGG | - | chr2_2:19069757-19069776 | None:intergenic | 35.0% | |
| ! | TTGATGGCATCAATAACCTT+TGG | - | chr2_2:19069758-19069777 | None:intergenic | 35.0% |
| CTTAGTAGATGATGCTAACT+TGG | + | chr2_2:19070060-19070079 | Msa0242710:CDS | 35.0% | |
| GATATCCAGTGTGCTTAATT+TGG | + | chr2_2:19070379-19070398 | Msa0242710:three_prime_UTR | 35.0% | |
| TTAAGCAACAAAAGGAAAGG+GGG | - | chr2_2:19070433-19070452 | None:intergenic | 35.0% | |
| CTTAAGCAACAAAAGGAAAG+GGG | - | chr2_2:19070434-19070453 | None:intergenic | 35.0% | |
| CACTTAAGCAACAAAAGGAA+AGG | - | chr2_2:19070436-19070455 | None:intergenic | 35.0% | |
| ACTCACACTTAAGCAACAAA+AGG | - | chr2_2:19070441-19070460 | None:intergenic | 35.0% | |
| TGATGGCATCAATAACCTTT+GGG | - | chr2_2:19069757-19069776 | None:intergenic | 35.0% | |
| ! | TTGATGGCATCAATAACCTT+TGG | - | chr2_2:19069758-19069777 | None:intergenic | 35.0% |
| CTTAGTAGATGATGCTAACT+TGG | + | chr2_2:19070060-19070079 | Msa0242710:CDS | 35.0% | |
| GATATCCAGTGTGCTTAATT+TGG | + | chr2_2:19070379-19070398 | Msa0242710:three_prime_UTR | 35.0% | |
| TTAAGCAACAAAAGGAAAGG+GGG | - | chr2_2:19070433-19070452 | None:intergenic | 35.0% | |
| CTTAAGCAACAAAAGGAAAG+GGG | - | chr2_2:19070434-19070453 | None:intergenic | 35.0% | |
| CACTTAAGCAACAAAAGGAA+AGG | - | chr2_2:19070436-19070455 | None:intergenic | 35.0% | |
| ACTCACACTTAAGCAACAAA+AGG | - | chr2_2:19070441-19070460 | None:intergenic | 35.0% | |
| ! | CATGGGTGTGTTCAATTTTG+AGG | + | chr2_2:19069661-19069680 | Msa0242710:exon | 40.0% |
| ! | AGAGCTTTGTAAAGTGTAGC+AGG | - | chr2_2:19069710-19069729 | None:intergenic | 40.0% |
| !! | CATCAATAACCTTTGGGGTA+AGG | - | chr2_2:19069751-19069770 | None:intergenic | 40.0% |
| GATGGCATCAATAACCTTTG+GGG | - | chr2_2:19069756-19069775 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_2:19069785-19069804 | Msa0242710:CDS | 40.0% | |
| AACTCACATTCGTTGAAGGT+CGG | + | chr2_2:19069825-19069844 | Msa0242710:intron | 40.0% | |
| GCTTACAACTACAGCATTGT+TGG | + | chr2_2:19070082-19070101 | Msa0242710:CDS | 40.0% | |
| TACAACTACAGCATTGTTGG+AGG | + | chr2_2:19070085-19070104 | Msa0242710:CDS | 40.0% | |
| GAGATCTTCTCTATTGTGTC+TGG | - | chr2_2:19070121-19070140 | None:intergenic | 40.0% | |
| ! | TTTGAGGCTAAATTGTCTGC+AGG | + | chr2_2:19070142-19070161 | Msa0242710:CDS | 40.0% |
| AAATTGTCTGCAGGTCCAAA+TGG | + | chr2_2:19070151-19070170 | Msa0242710:CDS | 40.0% | |
| TTTGCAATGGATCCTCCATT+TGG | - | chr2_2:19070169-19070188 | None:intergenic | 40.0% | |
| AGATGTTACTCCTAGTGAAG+AGG | + | chr2_2:19070216-19070235 | Msa0242710:CDS | 40.0% | |
| !! | TAAGGGTGATGGTCTTTTCA+AGG | + | chr2_2:19070258-19070277 | Msa0242710:CDS | 40.0% |
| !! | TGGTCTTTTCAAGGCTATAG+AGG | + | chr2_2:19070267-19070286 | Msa0242710:CDS | 40.0% |
| !! | GGTCTTTTCAAGGCTATAGA+GGG | + | chr2_2:19070268-19070287 | Msa0242710:CDS | 40.0% |
| ! | CATGGGTGTGTTCAATTTTG+AGG | + | chr2_2:19069661-19069680 | Msa0242710:exon | 40.0% |
| ! | AGAGCTTTGTAAAGTGTAGC+AGG | - | chr2_2:19069710-19069729 | None:intergenic | 40.0% |
| !! | CATCAATAACCTTTGGGGTA+AGG | - | chr2_2:19069751-19069770 | None:intergenic | 40.0% |
| GATGGCATCAATAACCTTTG+GGG | - | chr2_2:19069756-19069775 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_2:19069785-19069804 | Msa0242710:CDS | 40.0% | |
| AACTCACATTCGTTGAAGGT+CGG | + | chr2_2:19069825-19069844 | Msa0242710:intron | 40.0% | |
| GCTTACAACTACAGCATTGT+TGG | + | chr2_2:19070082-19070101 | Msa0242710:CDS | 40.0% | |
| TACAACTACAGCATTGTTGG+AGG | + | chr2_2:19070085-19070104 | Msa0242710:CDS | 40.0% | |
| GAGATCTTCTCTATTGTGTC+TGG | - | chr2_2:19070121-19070140 | None:intergenic | 40.0% | |
| ! | TTTGAGGCTAAATTGTCTGC+AGG | + | chr2_2:19070142-19070161 | Msa0242710:CDS | 40.0% |
| AAATTGTCTGCAGGTCCAAA+TGG | + | chr2_2:19070151-19070170 | Msa0242710:CDS | 40.0% | |
| TTTGCAATGGATCCTCCATT+TGG | - | chr2_2:19070169-19070188 | None:intergenic | 40.0% | |
| AGATGTTACTCCTAGTGAAG+AGG | + | chr2_2:19070216-19070235 | Msa0242710:CDS | 40.0% | |
| !! | TAAGGGTGATGGTCTTTTCA+AGG | + | chr2_2:19070258-19070277 | Msa0242710:CDS | 40.0% |
| !! | TGGTCTTTTCAAGGCTATAG+AGG | + | chr2_2:19070267-19070286 | Msa0242710:CDS | 40.0% |
| !! | GGTCTTTTCAAGGCTATAGA+GGG | + | chr2_2:19070268-19070287 | Msa0242710:CDS | 40.0% |
| TTCTGACAACCTTACCCCAA+AGG | + | chr2_2:19069739-19069758 | Msa0242710:CDS | 45.0% | |
| GAAACGGATCAATGTGCAGA+TGG | + | chr2_2:19070007-19070026 | Msa0242710:intron | 45.0% | |
| CACTTTGTGCAAGACATGCT+TGG | - | chr2_2:19070038-19070057 | None:intergenic | 45.0% | |
| CAAGCATGTCTTGCACAAAG+TGG | + | chr2_2:19070036-19070055 | Msa0242710:CDS | 45.0% | |
| ! | TACAGCATTGTTGGAGGTGT+TGG | + | chr2_2:19070091-19070110 | Msa0242710:CDS | 45.0% |
| CTCTTGAGTTCCTCTTCACT+AGG | - | chr2_2:19070229-19070248 | None:intergenic | 45.0% | |
| AGTGAAGAGGAACTCAAGAG+TGG | + | chr2_2:19070229-19070248 | Msa0242710:CDS | 45.0% | |
| ACTCAAGAGTGGCAAAGCTA+AGG | + | chr2_2:19070240-19070259 | Msa0242710:CDS | 45.0% | |
| CTCAAGAGTGGCAAAGCTAA+GGG | + | chr2_2:19070241-19070260 | Msa0242710:CDS | 45.0% | |
| GGCTATAGAGGGTTACTGTT+TGG | + | chr2_2:19070279-19070298 | Msa0242710:CDS | 45.0% | |
| CAACAAAAGGAAAGGGGGAA+AGG | - | chr2_2:19070428-19070447 | None:intergenic | 45.0% | |
| TTCTGACAACCTTACCCCAA+AGG | + | chr2_2:19069739-19069758 | Msa0242710:CDS | 45.0% | |
| GAAACGGATCAATGTGCAGA+TGG | + | chr2_2:19070007-19070026 | Msa0242710:intron | 45.0% | |
| CACTTTGTGCAAGACATGCT+TGG | - | chr2_2:19070038-19070057 | None:intergenic | 45.0% | |
| CAAGCATGTCTTGCACAAAG+TGG | + | chr2_2:19070036-19070055 | Msa0242710:CDS | 45.0% | |
| ! | TACAGCATTGTTGGAGGTGT+TGG | + | chr2_2:19070091-19070110 | Msa0242710:CDS | 45.0% |
| CTCTTGAGTTCCTCTTCACT+AGG | - | chr2_2:19070229-19070248 | None:intergenic | 45.0% | |
| AGTGAAGAGGAACTCAAGAG+TGG | + | chr2_2:19070229-19070248 | Msa0242710:CDS | 45.0% | |
| ACTCAAGAGTGGCAAAGCTA+AGG | + | chr2_2:19070240-19070259 | Msa0242710:CDS | 45.0% | |
| CTCAAGAGTGGCAAAGCTAA+GGG | + | chr2_2:19070241-19070260 | Msa0242710:CDS | 45.0% | |
| GGCTATAGAGGGTTACTGTT+TGG | + | chr2_2:19070279-19070298 | Msa0242710:CDS | 45.0% | |
| CAACAAAAGGAAAGGGGGAA+AGG | - | chr2_2:19070428-19070447 | None:intergenic | 45.0% | |
| AAGTGTAGCAGGAGCTACAG+TGG | - | chr2_2:19069699-19069718 | None:intergenic | 50.0% | |
| TTGTCTGCAGGTCCAAATGG+AGG | + | chr2_2:19070154-19070173 | Msa0242710:CDS | 50.0% | |
| AGTGGCAAAGCTAAGGGTGA+TGG | + | chr2_2:19070247-19070266 | Msa0242710:CDS | 50.0% | |
| GGCACCCAAATTAAGCACAC+TGG | - | chr2_2:19070387-19070406 | None:intergenic | 50.0% | |
| AAGTGTAGCAGGAGCTACAG+TGG | - | chr2_2:19069699-19069718 | None:intergenic | 50.0% | |
| TTGTCTGCAGGTCCAAATGG+AGG | + | chr2_2:19070154-19070173 | Msa0242710:CDS | 50.0% | |
| AGTGGCAAAGCTAAGGGTGA+TGG | + | chr2_2:19070247-19070266 | Msa0242710:CDS | 50.0% | |
| GGCACCCAAATTAAGCACAC+TGG | - | chr2_2:19070387-19070406 | None:intergenic | 50.0% | |
| TGTAGCAGGAGCTACAGTGG+AGG | - | chr2_2:19069696-19069715 | None:intergenic | 55.0% | |
| GTTGAAGGAAACGGTGGTGC+CGG | + | chr2_2:19069791-19069810 | Msa0242710:CDS | 55.0% | |
| TGTAGCAGGAGCTACAGTGG+AGG | - | chr2_2:19069696-19069715 | None:intergenic | 55.0% | |
| GTTGAAGGAAACGGTGGTGC+CGG | + | chr2_2:19069791-19069810 | Msa0242710:CDS | 55.0% | |
| AGCAGGAGCTACAGTGGAGG+TGG | - | chr2_2:19069693-19069712 | None:intergenic | 60.0% | |
| AGCAGGAGCTACAGTGGAGG+TGG | - | chr2_2:19069693-19069712 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 19069617 | 19070527 | 19069617 | ID=Msa0242710;Name=Msa0242710 |
| chr2_2 | mRNA | 19069617 | 19070527 | 19069617 | ID=Msa0242710-mRNA-1;Parent=Msa0242710;Name=Msa0242710-mRNA-1;_AED=0.41;_eAED=0.41;_QI=45|1|1|1|1|1|2|206|158 |
| chr2_2 | exon | 19069617 | 19069842 | 19069617 | ID=Msa0242710-mRNA-1:exon:7783;Parent=Msa0242710-mRNA-1 |
| chr2_2 | exon | 19070026 | 19070527 | 19070026 | ID=Msa0242710-mRNA-1:exon:7784;Parent=Msa0242710-mRNA-1 |
| chr2_2 | five_prime_UTR | 19069617 | 19069661 | 19069617 | ID=Msa0242710-mRNA-1:five_prime_utr;Parent=Msa0242710-mRNA-1 |
| chr2_2 | CDS | 19069662 | 19069842 | 19069662 | ID=Msa0242710-mRNA-1:cds;Parent=Msa0242710-mRNA-1 |
| chr2_2 | CDS | 19070026 | 19070321 | 19070026 | ID=Msa0242710-mRNA-1:cds;Parent=Msa0242710-mRNA-1 |
| chr2_2 | three_prime_UTR | 19070322 | 19070527 | 19070322 | ID=Msa0242710-mRNA-1:three_prime_utr;Parent=Msa0242710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
