Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280930 | P93333.1 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 2.78e-106 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280930 | sp|P93333|PR101_MEDTR | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 3.48e-109 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046680 | Msa0280930 | 0.835567 | 1.556894e-56 | -8.615850e-47 |
| Msa0129290 | Msa0280930 | 0.814923 | 1.202830e-51 | -8.615850e-47 |
| Msa0200080 | Msa0280930 | 0.874693 | 5.534386e-68 | -8.615850e-47 |
| Msa0200090 | Msa0280930 | 0.858317 | 8.949023e-63 | -8.615850e-47 |
| Msa0242700 | Msa0280930 | 0.872075 | 4.200922e-67 | -8.615850e-47 |
| Msa0242710 | Msa0280930 | 0.827506 | 1.506419e-54 | -8.615850e-47 |
| Msa0280930 | Msa0280940 | 0.961640 | 6.159491e-120 | -8.615850e-47 |
| Msa0280930 | Msa0280950 | 0.879722 | 9.878691e-70 | -8.615850e-47 |
| Msa0280930 | Msa0320130 | 0.836418 | 9.467529e-57 | -8.615850e-47 |
| Msa0280930 | Msa0320140 | 0.821142 | 4.723776e-53 | -8.615850e-47 |
| Msa0280930 | Msa0320160 | 0.808867 | 2.508205e-50 | -8.615850e-47 |
| Msa0280930 | Msa0421080 | 0.819688 | 1.018398e-52 | -8.615850e-47 |
| Msa0280930 | Msa0430320 | 0.805686 | 1.183970e-49 | -8.615850e-47 |
| Msa0280930 | Msa0466850 | 0.835276 | 1.844140e-56 | -8.615850e-47 |
| Msa0280930 | Msa0513670 | 0.835737 | 1.409994e-56 | -8.615850e-47 |
| Msa0280930 | Msa0588730 | 0.809615 | 1.733250e-50 | -8.615850e-47 |
| Msa0280930 | Msa0629030 | 0.863019 | 3.356188e-64 | -8.615850e-47 |
| Msa0280930 | Msa0629040 | 0.820273 | 7.482331e-53 | -8.615850e-47 |
| Msa0280930 | Msa0666580 | 0.854450 | 1.220760e-61 | -8.615850e-47 |
| Msa0280930 | Msa0716620 | 0.813391 | 2.621778e-51 | -8.615850e-47 |
| Msa0280930 | Msa0728520 | 0.824300 | 8.698704e-54 | -8.615850e-47 |
| Msa0280930 | Msa0753410 | 0.803398 | 3.553761e-49 | -8.615850e-47 |
| Msa0280930 | Msa0776540 | 0.827539 | 1.479712e-54 | -8.615850e-47 |
| Msa0280930 | Msa0794240 | 0.801382 | 9.244849e-49 | -8.615850e-47 |
| Msa0280930 | Msa0795330 | 0.809748 | 1.623123e-50 | -8.615850e-47 |
| Msa0280930 | Msa0826370 | 0.809121 | 2.213135e-50 | -8.615850e-47 |
| Msa0280930 | Msa0837550 | 0.858101 | 1.038212e-62 | -8.615850e-47 |
| Msa0280930 | Msa0948460 | 0.817009 | 4.117667e-52 | -8.615850e-47 |
| Msa0280930 | Msa1023430 | 0.829344 | 5.426748e-55 | -8.615850e-47 |
| Msa0280930 | Msa1026170 | 0.812740 | 3.642056e-51 | -8.615850e-47 |
| Msa0280930 | Msa1055710 | -0.848122 | 7.494344e-60 | -8.615850e-47 |
| Msa0280930 | Msa1107510 | 0.809169 | 2.160468e-50 | -8.615850e-47 |
| Msa0280930 | Msa1151070 | 0.822244 | 2.627915e-53 | -8.615850e-47 |
| Msa0280930 | Msa1208910 | 0.804894 | 1.735046e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280930 | MtrunA17_Chr2g0295021 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 2.56e-110 | 310 |
| Msa0280930 | MtrunA17_Chr2g0295001 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 2.56e-110 | 310 |
| Msa0280930 | MtrunA17_Chr2g0295051 | 87.898 | 157 | 19 | 0 | 1 | 157 | 1 | 157 | 1.38e-96 | 275 |
| Msa0280930 | MtrunA17_Chr2g0295064 | 85.350 | 157 | 23 | 0 | 1 | 157 | 68 | 224 | 1.14e-94 | 273 |
| Msa0280930 | MtrunA17_Chr2g0295041 | 84.076 | 157 | 25 | 0 | 1 | 157 | 1 | 157 | 4.80e-94 | 269 |
| Msa0280930 | MtrunA17_Chr4g0067951 | 73.248 | 157 | 42 | 0 | 1 | 157 | 1 | 157 | 3.20e-81 | 236 |
| Msa0280930 | MtrunA17_Chr6g0462311 | 71.975 | 157 | 44 | 0 | 1 | 157 | 1 | 157 | 6.58e-80 | 233 |
| Msa0280930 | MtrunA17_Chr2g0295141 | 65.605 | 157 | 54 | 0 | 1 | 157 | 1 | 157 | 1.85e-69 | 207 |
| Msa0280930 | MtrunA17_Chr6g0462291 | 70.714 | 140 | 41 | 0 | 1 | 140 | 1 | 140 | 9.20e-68 | 203 |
| Msa0280930 | MtrunA17_Chr2g0295091 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 4.12e-66 | 198 |
| Msa0280930 | MtrunA17_Chr2g0295104 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 2.68e-65 | 196 |
| Msa0280930 | MtrunA17_Chr2g0295124 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 6.13e-64 | 192 |
| Msa0280930 | MtrunA17_Chr2g0295081 | 60.510 | 157 | 62 | 0 | 1 | 157 | 1 | 157 | 3.94e-63 | 191 |
| Msa0280930 | MtrunA17_Chr2g0295211 | 41.026 | 156 | 91 | 1 | 1 | 155 | 1 | 156 | 8.93e-40 | 131 |
| Msa0280930 | MtrunA17_Chr4g0067841 | 40.385 | 156 | 92 | 1 | 1 | 155 | 1 | 156 | 1.85e-37 | 125 |
| Msa0280930 | MtrunA17_Chr4g0067921 | 44.720 | 161 | 82 | 5 | 1 | 157 | 1 | 158 | 4.17e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATAACCTTTGGAATA+AGG | 0.200219 | 2_3:-16075508 | None:intergenic |
| AACGAAAGTAAGTTTCTTGA+TGG | 0.287513 | 2_3:-16075576 | None:intergenic |
| AGCTATATGCTTTAGTAATC+AGG | 0.289844 | 2_3:-16076443 | None:intergenic |
| CCCTTGATTTCCTCTTCACT+TGG | 0.329042 | 2_3:-16076362 | None:intergenic |
| TATATCATGTGTTCTTGATT+TGG | 0.333285 | 2_3:+16076511 | Msa0280930:three_prime_UTR |
| CTTCAACAATTTCAATACTT+TGG | 0.342783 | 2_3:-16075535 | None:intergenic |
| GAAATCTTCTCCACTGTGTC+TGG | 0.355749 | 2_3:-16076254 | None:intergenic |
| AAGAAACTTACTTTCGTTGA+AGG | 0.370871 | 2_3:+16075581 | Msa0280930:CDS |
| GGCTCTTGAAGGTTACGTTT+TGG | 0.372797 | 2_3:+16076415 | Msa0280930:CDS |
| AGTAAGTTTCTTGATGGTTC+CGG | 0.383147 | 2_3:-16075570 | None:intergenic |
| CAAAGTATTGAAATTGTTGA+AGG | 0.421501 | 2_3:+16075536 | Msa0280930:CDS |
| GCTTACAACTACAGCATAGT+TGG | 0.425478 | 2_3:+16076218 | Msa0280930:CDS |
| TGGATGGCATCAATAACCTT+TGG | 0.428619 | 2_3:-16075515 | None:intergenic |
| AACAATTTCAATACTTTGGA+TGG | 0.439896 | 2_3:-16075531 | None:intergenic |
| TTTGAGTCTAAATTGTCTGC+AGG | 0.439927 | 2_3:+16076278 | Msa0280930:CDS |
| CAATCTCACACTTCAGCAAA+AGG | 0.443222 | 2_3:-16076556 | None:intergenic |
| ATTGAAATTGTTGAAGGAAA+CGG | 0.445615 | 2_3:+16075542 | Msa0280930:CDS |
| AAATCAAGGGTGGCAAAGCT+AGG | 0.448601 | 2_3:+16076375 | Msa0280930:CDS |
| TTTGCAATGGATCCTCCATC+TGG | 0.453770 | 2_3:-16076302 | None:intergenic |
| ACATTAGTATTATATCATCA+TGG | 0.474977 | 2_3:+16075403 | Msa0280930:exon |
| CATGGGTGTATTCAACTTTG+AGG | 0.475033 | 2_3:+16075421 | Msa0280930:exon |
| AGAGCTTTGTAAAGTCTAGC+AGG | 0.480944 | 2_3:-16075467 | None:intergenic |
| GGTGGCAAAGCTAGGGGTGA+TGG | 0.489081 | 2_3:+16076383 | Msa0280930:CDS |
| GTATTATTATAATTTATTGA+AGG | 0.489862 | 2_3:-16076598 | None:intergenic |
| AATCAAGGGTGGCAAAGCTA+GGG | 0.491277 | 2_3:+16076376 | Msa0280930:CDS |
| ACTGTGAAATACTTCACAAA+AGG | 0.498744 | 2_3:+16076329 | Msa0280930:CDS |
| ACCAAGTGAAGAGGAAATCA+AGG | 0.498836 | 2_3:+16076361 | Msa0280930:CDS |
| TTGCTTGCTTGCTTTATACA+TGG | 0.499671 | 2_3:+16076468 | Msa0280930:three_prime_UTR |
| TACAGCATAGTTGGAGGTGG+TGG | 0.504513 | 2_3:+16076227 | Msa0280930:CDS |
| TATTATTATAATTTATTGAA+GGG | 0.512183 | 2_3:-16076597 | None:intergenic |
| TTCTGATAACCTTATTCCAA+AGG | 0.526563 | 2_3:+16075499 | Msa0280930:CDS |
| AAAGTATGATTTGCACAAAG+TGG | 0.527363 | 2_3:+16076172 | Msa0280930:CDS |
| TTTCACAGTAAGCTTTGCAA+TGG | 0.527944 | 2_3:-16076315 | None:intergenic |
| TGCTTGCTTTATACATGGTG+TGG | 0.533550 | 2_3:+16076473 | Msa0280930:three_prime_UTR |
| GTTGAAGGAAACGGTGGCGC+CGG | 0.542615 | 2_3:+16075551 | Msa0280930:CDS |
| TGCAGACAATTTAGACTCAA+AGG | 0.546328 | 2_3:-16076276 | None:intergenic |
| AAATTGTCTGCAGGGCCAGA+TGG | 0.558648 | 2_3:+16076287 | Msa0280930:CDS |
| TATTATAATTTATTGAAGGG+AGG | 0.566695 | 2_3:-16076594 | None:intergenic |
| AAGGAAAGAGAGAATTACAT+TGG | 0.571088 | 2_3:-16076537 | None:intergenic |
| CATTAGTATTATATCATCAT+GGG | 0.574725 | 2_3:+16075404 | Msa0280930:exon |
| TTGAGTCTAAATTGTCTGCA+GGG | 0.579973 | 2_3:+16076279 | Msa0280930:CDS |
| TACAACTACAGCATAGTTGG+AGG | 0.596062 | 2_3:+16076221 | Msa0280930:CDS |
| TGATGCTGCACCAAGTGAAG+AGG | 0.603594 | 2_3:+16076352 | Msa0280930:CDS |
| TTGTCTGCAGGGCCAGATGG+AGG | 0.618761 | 2_3:+16076290 | Msa0280930:CDS |
| AACTACAGCATAGTTGGAGG+TGG | 0.623337 | 2_3:+16076224 | Msa0280930:CDS |
| ATCAAGGGTGGCAAAGCTAG+GGG | 0.634094 | 2_3:+16076377 | Msa0280930:CDS |
| AGCAGGAGCTACAATAGATG+TGG | 0.641681 | 2_3:-16075450 | None:intergenic |
| CCAAGTGAAGAGGAAATCAA+GGG | 0.664848 | 2_3:+16076362 | Msa0280930:CDS |
| GAAATTGTTGAAGGAAACGG+TGG | 0.666040 | 2_3:+16075545 | Msa0280930:CDS |
| AGTGAAGAGGAAATCAAGGG+TGG | 0.695634 | 2_3:+16076365 | Msa0280930:CDS |
| TGGTGGACTTCCAGACACAG+TGG | 0.728449 | 2_3:+16076244 | Msa0280930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATAATAAAAGAAAAG+AGG | - | chr2_3:16075980-16075999 | None:intergenic | 10.0% |
| !!! | TCTTTTCTTTTATTATATAT+TGG | + | chr2_3:16075979-16075998 | Msa0280930:intron | 10.0% |
| !! | GTATTATTATAATTTATTGA+AGG | - | chr2_3:16076601-16076620 | None:intergenic | 10.0% |
| !! | AATATATAATAAAAGAAAAG+AGG | - | chr2_3:16075980-16075999 | None:intergenic | 10.0% |
| !!! | TCTTTTCTTTTATTATATAT+TGG | + | chr2_3:16075979-16075998 | Msa0280930:intron | 10.0% |
| !! | GTATTATTATAATTTATTGA+AGG | - | chr2_3:16076601-16076620 | None:intergenic | 10.0% |
| !!! | TAAACATTTTATTCTACATA+GGG | - | chr2_3:16075654-16075673 | None:intergenic | 15.0% |
| !!! | TTAAACATTTTATTCTACAT+AGG | - | chr2_3:16075655-16075674 | None:intergenic | 15.0% |
| !!! | GTGTTATTATATACATTTAA+TGG | + | chr2_3:16075845-16075864 | Msa0280930:intron | 15.0% |
| !!! | CTTTTAAAAAATAGTTTTTC+TGG | - | chr2_3:16075914-16075933 | None:intergenic | 15.0% |
| !!! | TAAACATTTTATTCTACATA+GGG | - | chr2_3:16075654-16075673 | None:intergenic | 15.0% |
| !!! | TTAAACATTTTATTCTACAT+AGG | - | chr2_3:16075655-16075674 | None:intergenic | 15.0% |
| !!! | GTGTTATTATATACATTTAA+TGG | + | chr2_3:16075845-16075864 | Msa0280930:intron | 15.0% |
| !!! | CTTTTAAAAAATAGTTTTTC+TGG | - | chr2_3:16075914-16075933 | None:intergenic | 15.0% |
| !! | ACATTAGTATTATATCATCA+TGG | + | chr2_3:16075403-16075422 | Msa0280930:exon | 20.0% |
| !! | CATTAGTATTATATCATCAT+GGG | + | chr2_3:16075404-16075423 | Msa0280930:exon | 20.0% |
| !! | ATATATGTGAAAAATTGAAG+TGG | + | chr2_3:16075611-16075630 | Msa0280930:intron | 20.0% |
| !! | AAGATACATAACATAAATTG+TGG | + | chr2_3:16075775-16075794 | Msa0280930:intron | 20.0% |
| !! | AACAAGAATCAAACATTTAA+TGG | - | chr2_3:16075940-16075959 | None:intergenic | 20.0% |
| !! | TATTATAATTTATTGAAGGG+AGG | - | chr2_3:16076597-16076616 | None:intergenic | 20.0% |
| !! | ACATTAGTATTATATCATCA+TGG | + | chr2_3:16075403-16075422 | Msa0280930:exon | 20.0% |
| !! | CATTAGTATTATATCATCAT+GGG | + | chr2_3:16075404-16075423 | Msa0280930:exon | 20.0% |
| !! | ATATATGTGAAAAATTGAAG+TGG | + | chr2_3:16075611-16075630 | Msa0280930:intron | 20.0% |
| !! | AAGATACATAACATAAATTG+TGG | + | chr2_3:16075775-16075794 | Msa0280930:intron | 20.0% |
| !! | AACAAGAATCAAACATTTAA+TGG | - | chr2_3:16075940-16075959 | None:intergenic | 20.0% |
| !! | TATTATAATTTATTGAAGGG+AGG | - | chr2_3:16076597-16076616 | None:intergenic | 20.0% |
| ! | AACAATTTCAATACTTTGGA+TGG | - | chr2_3:16075534-16075553 | None:intergenic | 25.0% |
| ! | CTTCAACAATTTCAATACTT+TGG | - | chr2_3:16075538-16075557 | None:intergenic | 25.0% |
| !!! | CAAAGTATTGAAATTGTTGA+AGG | + | chr2_3:16075536-16075555 | Msa0280930:CDS | 25.0% |
| ! | ATTGAAATTGTTGAAGGAAA+CGG | + | chr2_3:16075542-16075561 | Msa0280930:CDS | 25.0% |
| !!! | AATTAACCGTCTTTATTTTG+AGG | - | chr2_3:16075717-16075736 | None:intergenic | 25.0% |
| ! | ATACATAACATAAATTGTGG+AGG | + | chr2_3:16075778-16075797 | Msa0280930:intron | 25.0% |
| ! | TTTCACAATTACTAACATGA+TGG | - | chr2_3:16076124-16076143 | None:intergenic | 25.0% |
| ! | TATATCATGTGTTCTTGATT+TGG | + | chr2_3:16076511-16076530 | Msa0280930:three_prime_UTR | 25.0% |
| ! | AACAATTTCAATACTTTGGA+TGG | - | chr2_3:16075534-16075553 | None:intergenic | 25.0% |
| ! | CTTCAACAATTTCAATACTT+TGG | - | chr2_3:16075538-16075557 | None:intergenic | 25.0% |
| !!! | CAAAGTATTGAAATTGTTGA+AGG | + | chr2_3:16075536-16075555 | Msa0280930:CDS | 25.0% |
| ! | ATTGAAATTGTTGAAGGAAA+CGG | + | chr2_3:16075542-16075561 | Msa0280930:CDS | 25.0% |
| !!! | AATTAACCGTCTTTATTTTG+AGG | - | chr2_3:16075717-16075736 | None:intergenic | 25.0% |
| ! | ATACATAACATAAATTGTGG+AGG | + | chr2_3:16075778-16075797 | Msa0280930:intron | 25.0% |
| ! | TTTCACAATTACTAACATGA+TGG | - | chr2_3:16076124-16076143 | None:intergenic | 25.0% |
| ! | TATATCATGTGTTCTTGATT+TGG | + | chr2_3:16076511-16076530 | Msa0280930:three_prime_UTR | 25.0% |
| TTCTGATAACCTTATTCCAA+AGG | + | chr2_3:16075499-16075518 | Msa0280930:CDS | 30.0% | |
| !! | CATCAATAACCTTTGGAATA+AGG | - | chr2_3:16075511-16075530 | None:intergenic | 30.0% |
| AACGAAAGTAAGTTTCTTGA+TGG | - | chr2_3:16075579-16075598 | None:intergenic | 30.0% | |
| AAGAAACTTACTTTCGTTGA+AGG | + | chr2_3:16075581-16075600 | Msa0280930:CDS | 30.0% | |
| TTCATGCAGTGAAAATTGTT+TGG | - | chr2_3:16075686-16075705 | None:intergenic | 30.0% | |
| CCATATCCTCAAAATAAAGA+CGG | + | chr2_3:16075708-16075727 | Msa0280930:intron | 30.0% | |
| !!! | AACAGTTTTTTTTACACCGA+CGG | - | chr2_3:16075878-16075897 | None:intergenic | 30.0% |
| ! | AAAGTATGATTTGCACAAAG+TGG | + | chr2_3:16076172-16076191 | Msa0280930:CDS | 30.0% |
| ACTGTGAAATACTTCACAAA+AGG | + | chr2_3:16076329-16076348 | Msa0280930:CDS | 30.0% | |
| AGCTATATGCTTTAGTAATC+AGG | - | chr2_3:16076446-16076465 | None:intergenic | 30.0% | |
| AAGGAAAGAGAGAATTACAT+TGG | - | chr2_3:16076540-16076559 | None:intergenic | 30.0% | |
| TTCTGATAACCTTATTCCAA+AGG | + | chr2_3:16075499-16075518 | Msa0280930:CDS | 30.0% | |
| !! | CATCAATAACCTTTGGAATA+AGG | - | chr2_3:16075511-16075530 | None:intergenic | 30.0% |
| AACGAAAGTAAGTTTCTTGA+TGG | - | chr2_3:16075579-16075598 | None:intergenic | 30.0% | |
| AAGAAACTTACTTTCGTTGA+AGG | + | chr2_3:16075581-16075600 | Msa0280930:CDS | 30.0% | |
| TTCATGCAGTGAAAATTGTT+TGG | - | chr2_3:16075686-16075705 | None:intergenic | 30.0% | |
| CCATATCCTCAAAATAAAGA+CGG | + | chr2_3:16075708-16075727 | Msa0280930:intron | 30.0% | |
| !!! | AACAGTTTTTTTTACACCGA+CGG | - | chr2_3:16075878-16075897 | None:intergenic | 30.0% |
| ! | AAAGTATGATTTGCACAAAG+TGG | + | chr2_3:16076172-16076191 | Msa0280930:CDS | 30.0% |
| ACTGTGAAATACTTCACAAA+AGG | + | chr2_3:16076329-16076348 | Msa0280930:CDS | 30.0% | |
| AGCTATATGCTTTAGTAATC+AGG | - | chr2_3:16076446-16076465 | None:intergenic | 30.0% | |
| AAGGAAAGAGAGAATTACAT+TGG | - | chr2_3:16076540-16076559 | None:intergenic | 30.0% | |
| ! | AGTAAGTTTCTTGATGGTTC+CGG | - | chr2_3:16075573-16075592 | None:intergenic | 35.0% |
| ATGTGAAAAATTGAAGTGGC+AGG | + | chr2_3:16075615-16075634 | Msa0280930:intron | 35.0% | |
| !!! | CCGTCTTTATTTTGAGGATA+TGG | - | chr2_3:16075711-16075730 | None:intergenic | 35.0% |
| ATTTAATGGAGATCTACCGT+CGG | + | chr2_3:16075859-16075878 | Msa0280930:intron | 35.0% | |
| !! | TAACATGATGGACATTCACT+TGG | - | chr2_3:16076112-16076131 | None:intergenic | 35.0% |
| GAAACGAATCAATTATGTGC+AGG | + | chr2_3:16076140-16076159 | Msa0280930:intron | 35.0% | |
| TGCAGACAATTTAGACTCAA+AGG | - | chr2_3:16076279-16076298 | None:intergenic | 35.0% | |
| TTTGAGTCTAAATTGTCTGC+AGG | + | chr2_3:16076278-16076297 | Msa0280930:CDS | 35.0% | |
| TTGAGTCTAAATTGTCTGCA+GGG | + | chr2_3:16076279-16076298 | Msa0280930:CDS | 35.0% | |
| TTTCACAGTAAGCTTTGCAA+TGG | - | chr2_3:16076318-16076337 | None:intergenic | 35.0% | |
| TTGCTTGCTTGCTTTATACA+TGG | + | chr2_3:16076468-16076487 | Msa0280930:three_prime_UTR | 35.0% | |
| ! | AGTAAGTTTCTTGATGGTTC+CGG | - | chr2_3:16075573-16075592 | None:intergenic | 35.0% |
| ATGTGAAAAATTGAAGTGGC+AGG | + | chr2_3:16075615-16075634 | Msa0280930:intron | 35.0% | |
| !!! | CCGTCTTTATTTTGAGGATA+TGG | - | chr2_3:16075711-16075730 | None:intergenic | 35.0% |
| ATTTAATGGAGATCTACCGT+CGG | + | chr2_3:16075859-16075878 | Msa0280930:intron | 35.0% | |
| !! | TAACATGATGGACATTCACT+TGG | - | chr2_3:16076112-16076131 | None:intergenic | 35.0% |
| GAAACGAATCAATTATGTGC+AGG | + | chr2_3:16076140-16076159 | Msa0280930:intron | 35.0% | |
| TGCAGACAATTTAGACTCAA+AGG | - | chr2_3:16076279-16076298 | None:intergenic | 35.0% | |
| TTTGAGTCTAAATTGTCTGC+AGG | + | chr2_3:16076278-16076297 | Msa0280930:CDS | 35.0% | |
| TTGAGTCTAAATTGTCTGCA+GGG | + | chr2_3:16076279-16076298 | Msa0280930:CDS | 35.0% | |
| TTTCACAGTAAGCTTTGCAA+TGG | - | chr2_3:16076318-16076337 | None:intergenic | 35.0% | |
| TTGCTTGCTTGCTTTATACA+TGG | + | chr2_3:16076468-16076487 | Msa0280930:three_prime_UTR | 35.0% | |
| CATGGGTGTATTCAACTTTG+AGG | + | chr2_3:16075421-16075440 | Msa0280930:exon | 40.0% | |
| ! | AGAGCTTTGTAAAGTCTAGC+AGG | - | chr2_3:16075470-16075489 | None:intergenic | 40.0% |
| TGGATGGCATCAATAACCTT+TGG | - | chr2_3:16075518-16075537 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_3:16075545-16075564 | Msa0280930:CDS | 40.0% | |
| GACATTCACTTGGTTCAACT+AGG | - | chr2_3:16076102-16076121 | None:intergenic | 40.0% | |
| ACGAATCAATTATGTGCAGG+TGG | + | chr2_3:16076143-16076162 | Msa0280930:intron | 40.0% | |
| GCTTACAACTACAGCATAGT+TGG | + | chr2_3:16076218-16076237 | Msa0280930:CDS | 40.0% | |
| TACAACTACAGCATAGTTGG+AGG | + | chr2_3:16076221-16076240 | Msa0280930:CDS | 40.0% | |
| ACCAAGTGAAGAGGAAATCA+AGG | + | chr2_3:16076361-16076380 | Msa0280930:CDS | 40.0% | |
| CCAAGTGAAGAGGAAATCAA+GGG | + | chr2_3:16076362-16076381 | Msa0280930:CDS | 40.0% | |
| TGCTTGCTTTATACATGGTG+TGG | + | chr2_3:16076473-16076492 | Msa0280930:three_prime_UTR | 40.0% | |
| CAATCTCACACTTCAGCAAA+AGG | - | chr2_3:16076559-16076578 | None:intergenic | 40.0% | |
| CATGGGTGTATTCAACTTTG+AGG | + | chr2_3:16075421-16075440 | Msa0280930:exon | 40.0% | |
| ! | AGAGCTTTGTAAAGTCTAGC+AGG | - | chr2_3:16075470-16075489 | None:intergenic | 40.0% |
| TGGATGGCATCAATAACCTT+TGG | - | chr2_3:16075518-16075537 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_3:16075545-16075564 | Msa0280930:CDS | 40.0% | |
| GACATTCACTTGGTTCAACT+AGG | - | chr2_3:16076102-16076121 | None:intergenic | 40.0% | |
| ACGAATCAATTATGTGCAGG+TGG | + | chr2_3:16076143-16076162 | Msa0280930:intron | 40.0% | |
| GCTTACAACTACAGCATAGT+TGG | + | chr2_3:16076218-16076237 | Msa0280930:CDS | 40.0% | |
| TACAACTACAGCATAGTTGG+AGG | + | chr2_3:16076221-16076240 | Msa0280930:CDS | 40.0% | |
| ACCAAGTGAAGAGGAAATCA+AGG | + | chr2_3:16076361-16076380 | Msa0280930:CDS | 40.0% | |
| CCAAGTGAAGAGGAAATCAA+GGG | + | chr2_3:16076362-16076381 | Msa0280930:CDS | 40.0% | |
| TGCTTGCTTTATACATGGTG+TGG | + | chr2_3:16076473-16076492 | Msa0280930:three_prime_UTR | 40.0% | |
| CAATCTCACACTTCAGCAAA+AGG | - | chr2_3:16076559-16076578 | None:intergenic | 40.0% | |
| AGCAGGAGCTACAATAGATG+TGG | - | chr2_3:16075453-16075472 | None:intergenic | 45.0% | |
| AACTACAGCATAGTTGGAGG+TGG | + | chr2_3:16076224-16076243 | Msa0280930:CDS | 45.0% | |
| GAAATCTTCTCCACTGTGTC+TGG | - | chr2_3:16076257-16076276 | None:intergenic | 45.0% | |
| TTTGCAATGGATCCTCCATC+TGG | - | chr2_3:16076305-16076324 | None:intergenic | 45.0% | |
| CCCTTGATTTCCTCTTCACT+TGG | - | chr2_3:16076365-16076384 | None:intergenic | 45.0% | |
| AGTGAAGAGGAAATCAAGGG+TGG | + | chr2_3:16076365-16076384 | Msa0280930:CDS | 45.0% | |
| AAATCAAGGGTGGCAAAGCT+AGG | + | chr2_3:16076375-16076394 | Msa0280930:CDS | 45.0% | |
| AATCAAGGGTGGCAAAGCTA+GGG | + | chr2_3:16076376-16076395 | Msa0280930:CDS | 45.0% | |
| !! | TAGGGGTGATGGTCTTTTCA+AGG | + | chr2_3:16076394-16076413 | Msa0280930:CDS | 45.0% |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_3:16076404-16076423 | Msa0280930:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_3:16076415-16076434 | Msa0280930:CDS | 45.0% |
| AGCAGGAGCTACAATAGATG+TGG | - | chr2_3:16075453-16075472 | None:intergenic | 45.0% | |
| AACTACAGCATAGTTGGAGG+TGG | + | chr2_3:16076224-16076243 | Msa0280930:CDS | 45.0% | |
| GAAATCTTCTCCACTGTGTC+TGG | - | chr2_3:16076257-16076276 | None:intergenic | 45.0% | |
| TTTGCAATGGATCCTCCATC+TGG | - | chr2_3:16076305-16076324 | None:intergenic | 45.0% | |
| CCCTTGATTTCCTCTTCACT+TGG | - | chr2_3:16076365-16076384 | None:intergenic | 45.0% | |
| AGTGAAGAGGAAATCAAGGG+TGG | + | chr2_3:16076365-16076384 | Msa0280930:CDS | 45.0% | |
| AAATCAAGGGTGGCAAAGCT+AGG | + | chr2_3:16076375-16076394 | Msa0280930:CDS | 45.0% | |
| AATCAAGGGTGGCAAAGCTA+GGG | + | chr2_3:16076376-16076395 | Msa0280930:CDS | 45.0% | |
| !! | TAGGGGTGATGGTCTTTTCA+AGG | + | chr2_3:16076394-16076413 | Msa0280930:CDS | 45.0% |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_3:16076404-16076423 | Msa0280930:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_3:16076415-16076434 | Msa0280930:CDS | 45.0% |
| !! | TATTATTATAATTTATTGAA+GGG | - | chr2_3:16076600-16076619 | None:intergenic | 5.0% |
| !! | TATTATTATAATTTATTGAA+GGG | - | chr2_3:16076600-16076619 | None:intergenic | 5.0% |
| TACAGCATAGTTGGAGGTGG+TGG | + | chr2_3:16076227-16076246 | Msa0280930:CDS | 50.0% | |
| AAATTGTCTGCAGGGCCAGA+TGG | + | chr2_3:16076287-16076306 | Msa0280930:CDS | 50.0% | |
| TGATGCTGCACCAAGTGAAG+AGG | + | chr2_3:16076352-16076371 | Msa0280930:CDS | 50.0% | |
| ATCAAGGGTGGCAAAGCTAG+GGG | + | chr2_3:16076377-16076396 | Msa0280930:CDS | 50.0% | |
| TACAGCATAGTTGGAGGTGG+TGG | + | chr2_3:16076227-16076246 | Msa0280930:CDS | 50.0% | |
| AAATTGTCTGCAGGGCCAGA+TGG | + | chr2_3:16076287-16076306 | Msa0280930:CDS | 50.0% | |
| TGATGCTGCACCAAGTGAAG+AGG | + | chr2_3:16076352-16076371 | Msa0280930:CDS | 50.0% | |
| ATCAAGGGTGGCAAAGCTAG+GGG | + | chr2_3:16076377-16076396 | Msa0280930:CDS | 50.0% | |
| !! | TGGTGGACTTCCAGACACAG+TGG | + | chr2_3:16076244-16076263 | Msa0280930:CDS | 55.0% |
| !! | TGGTGGACTTCCAGACACAG+TGG | + | chr2_3:16076244-16076263 | Msa0280930:CDS | 55.0% |
| GTTGAAGGAAACGGTGGCGC+CGG | + | chr2_3:16075551-16075570 | Msa0280930:CDS | 60.0% | |
| TTGTCTGCAGGGCCAGATGG+AGG | + | chr2_3:16076290-16076309 | Msa0280930:CDS | 60.0% | |
| GGTGGCAAAGCTAGGGGTGA+TGG | + | chr2_3:16076383-16076402 | Msa0280930:CDS | 60.0% | |
| GTTGAAGGAAACGGTGGCGC+CGG | + | chr2_3:16075551-16075570 | Msa0280930:CDS | 60.0% | |
| TTGTCTGCAGGGCCAGATGG+AGG | + | chr2_3:16076290-16076309 | Msa0280930:CDS | 60.0% | |
| GGTGGCAAAGCTAGGGGTGA+TGG | + | chr2_3:16076383-16076402 | Msa0280930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 16075375 | 16076627 | 16075375 | ID=Msa0280930;Name=Msa0280930 |
| chr2_3 | mRNA | 16075375 | 16076627 | 16075375 | ID=Msa0280930-mRNA-1;Parent=Msa0280930;Name=Msa0280930-mRNA-1;_AED=0.26;_eAED=0.26;_QI=47|1|1|1|1|1|2|173|157 |
| chr2_3 | exon | 16075375 | 16075602 | 16075375 | ID=Msa0280930-mRNA-1:exon:6637;Parent=Msa0280930-mRNA-1 |
| chr2_3 | exon | 16076162 | 16076627 | 16076162 | ID=Msa0280930-mRNA-1:exon:6638;Parent=Msa0280930-mRNA-1 |
| chr2_3 | five_prime_UTR | 16075375 | 16075421 | 16075375 | ID=Msa0280930-mRNA-1:five_prime_utr;Parent=Msa0280930-mRNA-1 |
| chr2_3 | CDS | 16075422 | 16075602 | 16075422 | ID=Msa0280930-mRNA-1:cds;Parent=Msa0280930-mRNA-1 |
| chr2_3 | CDS | 16076162 | 16076454 | 16076162 | ID=Msa0280930-mRNA-1:cds;Parent=Msa0280930-mRNA-1 |
| chr2_3 | three_prime_UTR | 16076455 | 16076627 | 16076455 | ID=Msa0280930-mRNA-1:three_prime_utr;Parent=Msa0280930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
