AlfalfaGEDB | Msa0280990

M. sativa cultivar zhongmu-4 / Msa0280990

KEGG: -
GO: -
PFAM: PF00407.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280990	SNQ45214.1	97.351	151	4	0	53	203	8	158	2.36e-98	292

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280990	sp\|P14710\|DRR3_PEA	87.417	151	19	0	53	203	8	158	4.85e-92	269

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0129290	Msa0280990	0.812701	3.712826e-51	-8.615850e-47
Msa0138870	Msa0280990	0.802824	4.669337e-49	-8.615850e-47
Msa0200090	Msa0280990	0.850782	1.358805e-60	-8.615850e-47
Msa0242710	Msa0280990	0.924661	5.227813e-90	-8.615850e-47
Msa0242720	Msa0280990	0.834665	2.628836e-56	-8.615850e-47
Msa0280940	Msa0280990	0.800825	1.201901e-48	-8.615850e-47
Msa0280990	Msa0281000	0.850206	1.972155e-60	-8.615850e-47
Msa0280990	Msa0320160	0.891573	3.510582e-74	-8.615850e-47
Msa0280990	Msa0421080	0.840242	9.782610e-58	-8.615850e-47
Msa0280990	Msa0480530	0.833773	4.399248e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280990	MtrunA17_Chr2g0295064	96.026	151	6	53	203	75	225	1.34e-100	290
Msa0280990	MtrunA17_Chr2g0295051	88.000	150	18	53	202	8	157	1.36e-92	267
Msa0280990	MtrunA17_Chr2g0295041	88.000	150	18	54	203	9	158	9.35e-92	265
Msa0280990	MtrunA17_Chr2g0295021	84.000	150	24	53	202	8	157	1.64e-87	254
Msa0280990	MtrunA17_Chr2g0295001	84.000	150	24	53	202	8	157	1.64e-87	254
Msa0280990	MtrunA17_Chr4g0067951	75.497	151	37	53	203	8	158	1.11e-78	232
Msa0280990	MtrunA17_Chr6g0462311	74.172	151	39	53	203	8	158	3.56e-77	228
Msa0280990	MtrunA17_Chr2g0295141	65.563	151	52	52	202	7	157	3.54e-65	198
Msa0280990	MtrunA17_Chr6g0462291	72.932	133	36	53	185	8	140	3.24e-64	196
Msa0280990	MtrunA17_Chr2g0295091	63.576	151	55	52	202	7	157	1.47e-62	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 57 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGTATAAGGAATATG+TGG	0.518683	2_3:-16163584	None:intergenic
AAATTGTCTGCAGGTCCAAA+TGG	0.485800	2_3:+16163218	Msa0280990:CDS
AACAATTTCAACACTCTTGA+TGG	0.245294	2_3:-16162838	None:intergenic
AAGAGTGTTGAAATTGTTGA+AGG	0.434561	2_3:+16162843	Msa0280990:CDS
AATAGAGAAGATCTCATTTG+AGG	0.494265	2_3:+16163193	Msa0280990:CDS
AATGTGAAATACTTCACAAA+AGG	0.503374	2_3:+16163260	Msa0280990:CDS
ACCATAAGTTTGCTCTTGCA+AGG	0.509624	2_3:-16161094	None:intergenic
ACTATACAAAGCTCTAGTTA+AGG	0.496420	2_3:+16162782	Msa0280990:CDS
ACTCAAGAGTGGCAAAGCTA+AGG	0.529920	2_3:+16163307	Msa0280990:CDS
ACTCACACTTAAGCAACAAA+AGG	0.514579	2_3:-16163505	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGTTAGATGGAATTTCA+TGG	-	chr2_3:16161342-16161361	None:intergenic	30.0%
ACTACATTCATAAACCACAT+TGG	+	chr2_3:16162641-16162660	Msa0280990:intron	30.0%
AACAATTTCAACACTCTTGA+TGG	-	chr2_3:16162841-16162860	None:intergenic	30.0%
GTTGAAATTGTTGAAGGAAA+CGG	+	chr2_3:16162849-16162868	Msa0280990:CDS	30.0%
AAAAAACTCACATTCGTTGA+AGG	+	chr2_3:16162888-16162907	Msa0280990:CDS	30.0%
CTTCAAATATGAAGAGATGT+AGG	-	chr2_3:16163029-16163048	None:intergenic	30.0%
TGATGTTTGTGATTGTGAAA+CGG	+	chr2_3:16163058-16163077	Msa0280990:intron	30.0%
AATAGAGAAGATCTCATTTG+AGG	+	chr2_3:16163193-16163212	Msa0280990:CDS	30.0%
TTTCACATTAAGCTTTGCAA+TGG	-	chr2_3:16163249-16163268	None:intergenic	30.0%
TATATGCTTTAGTTGTAGTC+AGG	-	chr2_3:16163377-16163396	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	16161078	16163594	16161078	ID=Msa0280990;Name=Msa0280990
chr2_3	mRNA	16161078	16163594	16161078	ID=Msa0280990-mRNA-1;Parent=Msa0280990;Name=Msa0280990-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0\|0.5\|0.33\|1\|0.5\|0.33\|3\|206\|203
chr2_3	exon	16161078	16161234	16161078	ID=Msa0280990-mRNA-1:exon:6652;Parent=Msa0280990-mRNA-1
chr2_3	exon	16162751	16162909	16162751	ID=Msa0280990-mRNA-1:exon:6653;Parent=Msa0280990-mRNA-1
chr2_3	exon	16163093	16163594	16163093	ID=Msa0280990-mRNA-1:exon:6654;Parent=Msa0280990-mRNA-1
chr2_3	CDS	16161078	16161234	16161078	ID=Msa0280990-mRNA-1:cds;Parent=Msa0280990-mRNA-1
chr2_3	CDS	16162751	16162909	16162751	ID=Msa0280990-mRNA-1:cds;Parent=Msa0280990-mRNA-1
chr2_3	CDS	16163093	16163388	16163093	ID=Msa0280990-mRNA-1:cds;Parent=Msa0280990-mRNA-1
chr2_3	three_prime_UTR	16163389	16163594	16163389	ID=Msa0280990-mRNA-1:three_prime_utr;Parent=Msa0280990-mRNA-1

Gene Sequence

>Msa0280990

ATGAAGCTTATGTCACCCTTGCAAGAGCAAACTTATGGTGTTCTCACATGTTTTGTTTTTAAGAAGTTTCAAGAGGAGCTGGAATGGTCTTTCCAATATTCAATTTATAATGAAAGTGGTAATGTCTTTGTGTTGCGGGATTATAAAGATGCTAATAATGAAACCACCTCCACTGTAGCCCCTGCTACACTATACAAAGCTCTAGTTAAGGATTCTGACAACCTTACCCCAAAGGTTATTGATGCCATCAAGAGTGTTGAAATTGTTGAAGGAAACGGTGGTGCCGGAACTATCAAAAAACTCACATTCGTTGAAGATGGTGAGACCAAGCATGTGTTGCACAAAGTGGACTTAGTAGATGATGCTAACTTGGCTTACAACTACAGCATTGTTGGAGGTGTTGGTCTTCCAGACACAATAGAGAAGATCTCATTTGAGGCTAAATTGTCTGCAGGTCCAAATGGAGGATCCATTGCAAAGCTTAATGTGAAATACTTCACAAAAGGAGATGTTACTCCTAGTGAAGAGGAACTCAAGAGTGGCAAAGCTAAGGGTGATGGTCTTTTCAAGGCTATAGAGGGTTACTGTTTGGCTAATCCTGACTACAACTAA

Protein sequence

>Msa0280990

MKLMSPLQEQTYGVLTCFVFKKFQEELEWSFQYSIYNESGNVFVLRDYKDANNETTSTVAPATLYKALVKDSDNLTPKVIDAIKSVEIVEGNGGAGTIKKLTFVEDGETKHVLHKVDLVDDANLAYNYSIVGGVGLPDTIEKISFEAKLSAGPNGGSIAKLNVKYFTKGDVTPSEEELKSGKAKGDGLFKAIEGYCLANPDYN*