Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280990 | SNQ45214.1 | 97.351 | 151 | 4 | 0 | 53 | 203 | 8 | 158 | 2.36e-98 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280990 | sp|P14710|DRR3_PEA | 87.417 | 151 | 19 | 0 | 53 | 203 | 8 | 158 | 4.85e-92 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0129290 | Msa0280990 | 0.812701 | 3.712826e-51 | -8.615850e-47 |
| Msa0138870 | Msa0280990 | 0.802824 | 4.669337e-49 | -8.615850e-47 |
| Msa0200090 | Msa0280990 | 0.850782 | 1.358805e-60 | -8.615850e-47 |
| Msa0242710 | Msa0280990 | 0.924661 | 5.227813e-90 | -8.615850e-47 |
| Msa0242720 | Msa0280990 | 0.834665 | 2.628836e-56 | -8.615850e-47 |
| Msa0280940 | Msa0280990 | 0.800825 | 1.201901e-48 | -8.615850e-47 |
| Msa0280990 | Msa0281000 | 0.850206 | 1.972155e-60 | -8.615850e-47 |
| Msa0280990 | Msa0320160 | 0.891573 | 3.510582e-74 | -8.615850e-47 |
| Msa0280990 | Msa0421080 | 0.840242 | 9.782610e-58 | -8.615850e-47 |
| Msa0280990 | Msa0480530 | 0.833773 | 4.399248e-56 | -8.615850e-47 |
| Msa0280990 | Msa0480540 | 0.808046 | 3.754632e-50 | -8.615850e-47 |
| Msa0280990 | Msa0513670 | 0.800157 | 1.644138e-48 | -8.615850e-47 |
| Msa0280990 | Msa0561110 | 0.822315 | 2.529389e-53 | -8.615850e-47 |
| Msa0280990 | Msa0615200 | 0.818958 | 1.493482e-52 | -8.615850e-47 |
| Msa0280990 | Msa0629030 | 0.831353 | 1.751220e-55 | -8.615850e-47 |
| Msa0280990 | Msa0666580 | 0.835698 | 1.441849e-56 | -8.615850e-47 |
| Msa0280990 | Msa0716620 | 0.836074 | 1.158254e-56 | -8.615850e-47 |
| Msa0280990 | Msa0728230 | 0.822111 | 2.821004e-53 | -8.615850e-47 |
| Msa0280990 | Msa0728570 | 0.821219 | 4.534735e-53 | -8.615850e-47 |
| Msa0280990 | Msa0744540 | 0.838983 | 2.079464e-57 | -8.615850e-47 |
| Msa0280990 | Msa0744550 | 0.811140 | 8.126058e-51 | -8.615850e-47 |
| Msa0280990 | Msa0744560 | 0.800915 | 1.152192e-48 | -8.615850e-47 |
| Msa0280990 | Msa0772350 | 0.807078 | 6.026579e-50 | -8.615850e-47 |
| Msa0280990 | Msa0794200 | 0.806584 | 7.664203e-50 | -8.615850e-47 |
| Msa0280990 | Msa0826360 | 0.806312 | 8.744403e-50 | -8.615850e-47 |
| Msa0280990 | Msa0826370 | 0.824851 | 6.450808e-54 | -8.615850e-47 |
| Msa0280990 | Msa0837550 | 0.858256 | 9.336301e-63 | -8.615850e-47 |
| Msa0280990 | Msa0865820 | 0.804501 | 2.096095e-49 | -8.615850e-47 |
| Msa0280990 | Msa1023430 | 0.800950 | 1.133144e-48 | -8.615850e-47 |
| Msa0280990 | Msa1061840 | 0.824097 | 9.706364e-54 | -8.615850e-47 |
| Msa0280990 | Msa1071350 | 0.802500 | 5.446536e-49 | -8.615850e-47 |
| Msa0280990 | Msa1107510 | 0.804758 | 1.851941e-49 | -8.615850e-47 |
| Msa0280990 | Msa1110900 | 0.829069 | 6.326606e-55 | -8.615850e-47 |
| Msa0280990 | Msa1218190 | 0.804011 | 2.651086e-49 | -8.615850e-47 |
| Msa0280990 | Msa1275220 | 0.817314 | 3.516438e-52 | -8.615850e-47 |
| Msa0280990 | Msa1398120 | 0.817582 | 3.059927e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280990 | MtrunA17_Chr2g0295064 | 96.026 | 151 | 6 | 0 | 53 | 203 | 75 | 225 | 1.34e-100 | 290 |
| Msa0280990 | MtrunA17_Chr2g0295051 | 88.000 | 150 | 18 | 0 | 53 | 202 | 8 | 157 | 1.36e-92 | 267 |
| Msa0280990 | MtrunA17_Chr2g0295041 | 88.000 | 150 | 18 | 0 | 54 | 203 | 9 | 158 | 9.35e-92 | 265 |
| Msa0280990 | MtrunA17_Chr2g0295021 | 84.000 | 150 | 24 | 0 | 53 | 202 | 8 | 157 | 1.64e-87 | 254 |
| Msa0280990 | MtrunA17_Chr2g0295001 | 84.000 | 150 | 24 | 0 | 53 | 202 | 8 | 157 | 1.64e-87 | 254 |
| Msa0280990 | MtrunA17_Chr4g0067951 | 75.497 | 151 | 37 | 0 | 53 | 203 | 8 | 158 | 1.11e-78 | 232 |
| Msa0280990 | MtrunA17_Chr6g0462311 | 74.172 | 151 | 39 | 0 | 53 | 203 | 8 | 158 | 3.56e-77 | 228 |
| Msa0280990 | MtrunA17_Chr2g0295141 | 65.563 | 151 | 52 | 0 | 52 | 202 | 7 | 157 | 3.54e-65 | 198 |
| Msa0280990 | MtrunA17_Chr6g0462291 | 72.932 | 133 | 36 | 0 | 53 | 185 | 8 | 140 | 3.24e-64 | 196 |
| Msa0280990 | MtrunA17_Chr2g0295091 | 63.576 | 151 | 55 | 0 | 52 | 202 | 7 | 157 | 1.47e-62 | 191 |
| Msa0280990 | MtrunA17_Chr2g0295104 | 62.914 | 151 | 56 | 0 | 52 | 202 | 7 | 157 | 1.51e-61 | 189 |
| Msa0280990 | MtrunA17_Chr2g0295124 | 62.667 | 150 | 56 | 0 | 53 | 202 | 8 | 157 | 3.25e-60 | 185 |
| Msa0280990 | MtrunA17_Chr2g0295081 | 59.459 | 148 | 60 | 0 | 55 | 202 | 10 | 157 | 1.71e-59 | 183 |
| Msa0280990 | MtrunA17_Chr2g0295211 | 39.597 | 149 | 89 | 1 | 53 | 200 | 8 | 156 | 2.00e-35 | 122 |
| Msa0280990 | MtrunA17_Chr4g0067921 | 43.949 | 157 | 81 | 5 | 51 | 203 | 6 | 159 | 6.67e-33 | 116 |
| Msa0280990 | MtrunA17_Chr4g0067841 | 38.926 | 149 | 90 | 1 | 53 | 200 | 8 | 156 | 1.88e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATCCAGTGTGCTTAATT+TGG | 0.180482 | 2_3:+16163446 | Msa0280990:three_prime_UTR |
| AACAATTTCAACACTCTTGA+TGG | 0.245294 | 2_3:-16162838 | None:intergenic |
| TTTCATTATAAATTGAATAT+TGG | 0.247568 | 2_3:-16161170 | None:intergenic |
| TGATGGCATCAATAACCTTT+GGG | 0.301288 | 2_3:-16162821 | None:intergenic |
| TTGATGGCATCAATAACCTT+TGG | 0.345179 | 2_3:-16162822 | None:intergenic |
| GGCTATAGAGGGTTACTGTT+TGG | 0.394448 | 2_3:+16163346 | Msa0280990:CDS |
| CTTAGTAGATGATGCTAACT+TGG | 0.397103 | 2_3:+16163127 | Msa0280990:CDS |
| GCTTACAACTACAGCATTGT+TGG | 0.405129 | 2_3:+16163149 | Msa0280990:CDS |
| CCCTTGCAAGAGCAAACTTA+TGG | 0.407748 | 2_3:+16161093 | Msa0280990:CDS |
| TGGTAATGTCTTTGTGTTGC+GGG | 0.412771 | 2_3:+16161194 | Msa0280990:CDS |
| TTTGCAATGGATCCTCCATT+TGG | 0.420662 | 2_3:-16163233 | None:intergenic |
| TATATGCTTTAGTTGTAGTC+AGG | 0.421813 | 2_3:-16163374 | None:intergenic |
| TACAGCATTGTTGGAGGTGT+TGG | 0.427537 | 2_3:+16163158 | Msa0280990:CDS |
| GAGATCTTCTCTATTGTGTC+TGG | 0.431898 | 2_3:-16163185 | None:intergenic |
| CATCAATAACCTTTGGGGTA+AGG | 0.433870 | 2_3:-16162815 | None:intergenic |
| AAGAGTGTTGAAATTGTTGA+AGG | 0.434561 | 2_3:+16162843 | Msa0280990:CDS |
| ATATCCAGTGTGCTTAATTT+GGG | 0.434922 | 2_3:+16163447 | Msa0280990:three_prime_UTR |
| AGAGCTTTGTATAGTGTAGC+AGG | 0.447815 | 2_3:-16162774 | None:intergenic |
| CACTTTGTGCAACACATGCT+TGG | 0.457459 | 2_3:-16163102 | None:intergenic |
| TAAGAAGTTTCAAGAGGAGC+TGG | 0.460745 | 2_3:+16161137 | Msa0280990:CDS |
| TATTCAATTTATAATGAAAG+TGG | 0.472863 | 2_3:+16161174 | Msa0280990:CDS |
| AAATTGTCTGCAGGTCCAAA+TGG | 0.485800 | 2_3:+16163218 | Msa0280990:CDS |
| AATAGAGAAGATCTCATTTG+AGG | 0.494265 | 2_3:+16163193 | Msa0280990:CDS |
| AGCAGGGGCTACAGTGGAGG+TGG | 0.494653 | 2_3:-16162757 | None:intergenic |
| ACTATACAAAGCTCTAGTTA+AGG | 0.496420 | 2_3:+16162782 | Msa0280990:CDS |
| CTCTTGAGTTCCTCTTCACT+AGG | 0.501934 | 2_3:-16163293 | None:intergenic |
| AATGTGAAATACTTCACAAA+AGG | 0.503374 | 2_3:+16163260 | Msa0280990:CDS |
| ACCATAAGTTTGCTCTTGCA+AGG | 0.509624 | 2_3:-16161094 | None:intergenic |
| TTTCACATTAAGCTTTGCAA+TGG | 0.512266 | 2_3:-16163246 | None:intergenic |
| ACTCACACTTAAGCAACAAA+AGG | 0.514579 | 2_3:-16163505 | None:intergenic |
| ACTTAAGCAACAAAAGGAAA+GGG | 0.517656 | 2_3:-16163499 | None:intergenic |
| AAACTTGTATAAGGAATATG+TGG | 0.518683 | 2_3:-16163584 | None:intergenic |
| GTTGAAGGAAACGGTGGTGC+CGG | 0.528042 | 2_3:+16162858 | Msa0280990:CDS |
| ACTCAAGAGTGGCAAAGCTA+AGG | 0.529920 | 2_3:+16163307 | Msa0280990:CDS |
| CTCAAGAGTGGCAAAGCTAA+GGG | 0.532020 | 2_3:+16163308 | Msa0280990:CDS |
| TTTGAGGCTAAATTGTCTGC+AGG | 0.535432 | 2_3:+16163209 | Msa0280990:CDS |
| AGTTTCAAGAGGAGCTGGAA+TGG | 0.539520 | 2_3:+16161142 | Msa0280990:CDS |
| GTTGAAATTGTTGAAGGAAA+CGG | 0.548798 | 2_3:+16162849 | Msa0280990:CDS |
| CTTAAGCAACAAAAGGAAAG+GGG | 0.552624 | 2_3:-16163498 | None:intergenic |
| CACTTAAGCAACAAAAGGAA+AGG | 0.564496 | 2_3:-16163500 | None:intergenic |
| TACAACTACAGCATTGTTGG+AGG | 0.566488 | 2_3:+16163152 | Msa0280990:CDS |
| CAAGCATGTGTTGCACAAAG+TGG | 0.568932 | 2_3:+16163103 | Msa0280990:CDS |
| GATGGCATCAATAACCTTTG+GGG | 0.578696 | 2_3:-16162820 | None:intergenic |
| CCATAAGTTTGCTCTTGCAA+GGG | 0.592138 | 2_3:-16161093 | None:intergenic |
| AGTGGCAAAGCTAAGGGTGA+TGG | 0.593000 | 2_3:+16163314 | Msa0280990:CDS |
| TTCTGACAACCTTACCCCAA+AGG | 0.596498 | 2_3:+16162806 | Msa0280990:CDS |
| GAGCTTTGTATAGTGTAGCA+GGG | 0.601987 | 2_3:-16162773 | None:intergenic |
| TAGTGTAGCAGGGGCTACAG+TGG | 0.603086 | 2_3:-16162763 | None:intergenic |
| AGATGTTACTCCTAGTGAAG+AGG | 0.628737 | 2_3:+16163283 | Msa0280990:CDS |
| GTGGTAATGTCTTTGTGTTG+CGG | 0.641536 | 2_3:+16161193 | Msa0280990:CDS |
| TTGTCTGCAGGTCCAAATGG+AGG | 0.646240 | 2_3:+16163221 | Msa0280990:CDS |
| GGCACCCAAATTAAGCACAC+TGG | 0.647847 | 2_3:-16163451 | None:intergenic |
| AGCTTTGTATAGTGTAGCAG+GGG | 0.650529 | 2_3:-16162772 | None:intergenic |
| TGTAGCAGGGGCTACAGTGG+AGG | 0.665415 | 2_3:-16162760 | None:intergenic |
| AGTGAAGAGGAACTCAAGAG+TGG | 0.684104 | 2_3:+16163296 | Msa0280990:CDS |
| TTAAGCAACAAAAGGAAAGG+GGG | 0.684119 | 2_3:-16163497 | None:intergenic |
| GAAATTGTTGAAGGAAACGG+TGG | 0.749751 | 2_3:+16162852 | Msa0280990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTATAAATTGAATAT+TGG | - | chr2_3:16161173-16161192 | None:intergenic | 10.0% |
| !!! | AGTTTATATTTTTAGTTTTA+AGG | - | chr2_3:16161743-16161762 | None:intergenic | 10.0% |
| !! | CAAAAAAGAAAAAAAATATT+TGG | - | chr2_3:16162415-16162434 | None:intergenic | 10.0% |
| !! | TATTCAATTTATAATGAAAG+TGG | + | chr2_3:16161174-16161193 | Msa0280990:CDS | 15.0% |
| !!! | AACACTTGTTAATAAAAAAT+AGG | + | chr2_3:16161599-16161618 | Msa0280990:intron | 15.0% |
| !!! | ACACTTGTTAATAAAAAATA+GGG | + | chr2_3:16161600-16161619 | Msa0280990:intron | 15.0% |
| !!! | ATTTTTATACTTAAGCTTAT+GGG | - | chr2_3:16161701-16161720 | None:intergenic | 15.0% |
| !!! | ATATTTTTAGTTTTAAGGTA+GGG | - | chr2_3:16161738-16161757 | None:intergenic | 15.0% |
| !!! | TATATTTTTAGTTTTAAGGT+AGG | - | chr2_3:16161739-16161758 | None:intergenic | 15.0% |
| !! | AAAATGATTTAGTTACAAAT+GGG | - | chr2_3:16161963-16161982 | None:intergenic | 15.0% |
| !! | TAAAATGATTTAGTTACAAA+TGG | - | chr2_3:16161964-16161983 | None:intergenic | 15.0% |
| !! | AATAATACTAATACTTTAGT+TGG | - | chr2_3:16162063-16162082 | None:intergenic | 15.0% |
| !!! | TGTATTATTTAGACTTTTTT+TGG | - | chr2_3:16162593-16162612 | None:intergenic | 15.0% |
| !!! | ATTTTAATACATTACTATCA+TGG | + | chr2_3:16162710-16162729 | Msa0280990:intron | 15.0% |
| !!! | TTTTAATACATTACTATCAT+GGG | + | chr2_3:16162711-16162730 | Msa0280990:intron | 15.0% |
| !! | ACCAAATCATCAATATAAAT+CGG | + | chr2_3:16161483-16161502 | Msa0280990:intron | 20.0% |
| !! | TTTATTAACAAGTGTTCTAA+GGG | - | chr2_3:16161595-16161614 | None:intergenic | 20.0% |
| !!! | TTTTATTAACAAGTGTTCTA+AGG | - | chr2_3:16161596-16161615 | None:intergenic | 20.0% |
| !!! | GATTTTTATACTTAAGCTTA+TGG | - | chr2_3:16161702-16161721 | None:intergenic | 20.0% |
| !! | AAGCTTAAGTATAAAAATCA+TGG | + | chr2_3:16161703-16161722 | Msa0280990:intron | 20.0% |
| !! | TAAGTATAAAAATCATGGTT+TGG | + | chr2_3:16161708-16161727 | Msa0280990:intron | 20.0% |
| !! | ATAATAATGTAACTTGAAGT+TGG | + | chr2_3:16161811-16161830 | Msa0280990:intron | 20.0% |
| !!! | TTTATTCGAAACATTTTTGT+CGG | + | chr2_3:16161980-16161999 | Msa0280990:intron | 20.0% |
| !!! | GTCTGTTTAGTTTTATTTAA+GGG | - | chr2_3:16162029-16162048 | None:intergenic | 20.0% |
| !!! | TGTCTGTTTAGTTTTATTTA+AGG | - | chr2_3:16162030-16162049 | None:intergenic | 20.0% |
| !!! | TAAGAGTTTTAAAATTTGAC+TGG | + | chr2_3:16162339-16162358 | Msa0280990:intron | 20.0% |
| !! | TAGTTATGTCTAGTATTTAT+AGG | - | chr2_3:16162625-16162644 | None:intergenic | 20.0% |
| !! | TAGTAATGTATTAAAATGCT+AGG | - | chr2_3:16162707-16162726 | None:intergenic | 20.0% |
| !!! | TGTTTTTAAGAAGTTTCAAG+AGG | + | chr2_3:16161131-16161150 | Msa0280990:CDS | 25.0% |
| !! | TCTCAGTATTTTTCTTCATA+TGG | + | chr2_3:16161312-16161331 | Msa0280990:intron | 25.0% |
| !! | TATTAGTCAAGATTCTAGAA+TGG | + | chr2_3:16162129-16162148 | Msa0280990:intron | 25.0% |
| !!! | ACATAATTTCCTCTACTTTT+TGG | + | chr2_3:16162210-16162229 | Msa0280990:intron | 25.0% |
| !!! | CATAATTTCCTCTACTTTTT+GGG | + | chr2_3:16162211-16162230 | Msa0280990:intron | 25.0% |
| ! | TCAAAATCTGAGTATTCTTT+GGG | - | chr2_3:16162279-16162298 | None:intergenic | 25.0% |
| ! | TTCAAAATCTGAGTATTCTT+TGG | - | chr2_3:16162280-16162299 | None:intergenic | 25.0% |
| !!! | TAAAATTTGACTGGTCTTAT+AGG | + | chr2_3:16162348-16162367 | Msa0280990:intron | 25.0% |
| ! | TAAAGATGATGACTAATATC+AGG | - | chr2_3:16162535-16162554 | None:intergenic | 25.0% |
| ! | AGTCATCATCTTTATCTAAT+TGG | + | chr2_3:16162541-16162560 | Msa0280990:intron | 25.0% |
| ! | AATGTGAAATACTTCACAAA+AGG | + | chr2_3:16163260-16163279 | Msa0280990:CDS | 25.0% |
| ! | AGGAAAAATGAGAATTACAT+TGG | - | chr2_3:16163475-16163494 | None:intergenic | 25.0% |
| AGTAGTTAGATGGAATTTCA+TGG | - | chr2_3:16161342-16161361 | None:intergenic | 30.0% | |
| ! | GCCGATTTATATTGATGATT+TGG | - | chr2_3:16161487-16161506 | None:intergenic | 30.0% |
| ACTACATTCATAAACCACAT+TGG | + | chr2_3:16162641-16162660 | Msa0280990:intron | 30.0% | |
| ! | ACTATACAAAGCTCTAGTTA+AGG | + | chr2_3:16162782-16162801 | Msa0280990:CDS | 30.0% |
| AACAATTTCAACACTCTTGA+TGG | - | chr2_3:16162841-16162860 | None:intergenic | 30.0% | |
| !! | AAGAGTGTTGAAATTGTTGA+AGG | + | chr2_3:16162843-16162862 | Msa0280990:CDS | 30.0% |
| GTTGAAATTGTTGAAGGAAA+CGG | + | chr2_3:16162849-16162868 | Msa0280990:CDS | 30.0% | |
| !!! | TGTGAGTTTTTTGATAGTTC+CGG | - | chr2_3:16162880-16162899 | None:intergenic | 30.0% |
| AAAAAACTCACATTCGTTGA+AGG | + | chr2_3:16162888-16162907 | Msa0280990:CDS | 30.0% | |
| CTTCAAATATGAAGAGATGT+AGG | - | chr2_3:16163029-16163048 | None:intergenic | 30.0% | |
| TGATGTTTGTGATTGTGAAA+CGG | + | chr2_3:16163058-16163077 | Msa0280990:intron | 30.0% | |
| AATAGAGAAGATCTCATTTG+AGG | + | chr2_3:16163193-16163212 | Msa0280990:CDS | 30.0% | |
| TTTCACATTAAGCTTTGCAA+TGG | - | chr2_3:16163249-16163268 | None:intergenic | 30.0% | |
| TATATGCTTTAGTTGTAGTC+AGG | - | chr2_3:16163377-16163396 | None:intergenic | 30.0% | |
| ATATCCAGTGTGCTTAATTT+GGG | + | chr2_3:16163447-16163466 | Msa0280990:three_prime_UTR | 30.0% | |
| ACTTAAGCAACAAAAGGAAA+GGG | - | chr2_3:16163502-16163521 | None:intergenic | 30.0% | |
| !! | TGCAAGTACTTTGAGTTTTG+AGG | + | chr2_3:16161271-16161290 | Msa0280990:intron | 35.0% |
| !! | GCAAGTACTTTGAGTTTTGA+GGG | + | chr2_3:16161272-16161291 | Msa0280990:intron | 35.0% |
| TTAAGCTCATTTCCTATCGA+TGG | - | chr2_3:16161372-16161391 | None:intergenic | 35.0% | |
| ATGATGAACTCTCGATCTAA+AGG | - | chr2_3:16161672-16161691 | None:intergenic | 35.0% | |
| !! | ACTGCAGCTTTTGATTCTAA+AGG | + | chr2_3:16161842-16161861 | Msa0280990:intron | 35.0% |
| AATGCAAACCCAAAAAGTAG+AGG | - | chr2_3:16162222-16162241 | None:intergenic | 35.0% | |
| ! | ATATATTGCCGTAGCTTTTG+TGG | + | chr2_3:16162299-16162318 | Msa0280990:intron | 35.0% |
| TCAAAGAACCACAAAAGCTA+CGG | - | chr2_3:16162310-16162329 | None:intergenic | 35.0% | |
| ! | GATGACTAATATCAGGTTGT+TGG | - | chr2_3:16162528-16162547 | None:intergenic | 35.0% |
| ! | AAGTTGATTACTTGCCAATG+TGG | - | chr2_3:16162658-16162677 | None:intergenic | 35.0% |
| TGATGGCATCAATAACCTTT+GGG | - | chr2_3:16162824-16162843 | None:intergenic | 35.0% | |
| ! | TTGATGGCATCAATAACCTT+TGG | - | chr2_3:16162825-16162844 | None:intergenic | 35.0% |
| CTTAGTAGATGATGCTAACT+TGG | + | chr2_3:16163127-16163146 | Msa0280990:CDS | 35.0% | |
| GATATCCAGTGTGCTTAATT+TGG | + | chr2_3:16163446-16163465 | Msa0280990:three_prime_UTR | 35.0% | |
| TTAAGCAACAAAAGGAAAGG+GGG | - | chr2_3:16163500-16163519 | None:intergenic | 35.0% | |
| CTTAAGCAACAAAAGGAAAG+GGG | - | chr2_3:16163501-16163520 | None:intergenic | 35.0% | |
| CACTTAAGCAACAAAAGGAA+AGG | - | chr2_3:16163503-16163522 | None:intergenic | 35.0% | |
| ACTCACACTTAAGCAACAAA+AGG | - | chr2_3:16163508-16163527 | None:intergenic | 35.0% | |
| ! | CCATAAGTTTGCTCTTGCAA+GGG | - | chr2_3:16161096-16161115 | None:intergenic | 40.0% |
| ! | ACCATAAGTTTGCTCTTGCA+AGG | - | chr2_3:16161097-16161116 | None:intergenic | 40.0% |
| TAAGAAGTTTCAAGAGGAGC+TGG | + | chr2_3:16161137-16161156 | Msa0280990:CDS | 40.0% | |
| ! | GTGGTAATGTCTTTGTGTTG+CGG | + | chr2_3:16161193-16161212 | Msa0280990:CDS | 40.0% |
| ! | TGGTAATGTCTTTGTGTTGC+GGG | + | chr2_3:16161194-16161213 | Msa0280990:CDS | 40.0% |
| TGGAATGGCAAGTAGTTAGA+TGG | - | chr2_3:16161352-16161371 | None:intergenic | 40.0% | |
| CTCATTTCCTATCGATGGAA+TGG | - | chr2_3:16161367-16161386 | None:intergenic | 40.0% | |
| ! | TTGTATGCACGTGGGTTATA+TGG | - | chr2_3:16161463-16161482 | None:intergenic | 40.0% |
| !! | GATTTGGTTTGTATGCACGT+GGG | - | chr2_3:16161471-16161490 | None:intergenic | 40.0% |
| !! | TGATTTGGTTTGTATGCACG+TGG | - | chr2_3:16161472-16161491 | None:intergenic | 40.0% |
| ATGAACTCTCGATCTAAAGG+AGG | - | chr2_3:16161669-16161688 | None:intergenic | 40.0% | |
| ! | AGCTTTGTATAGTGTAGCAG+GGG | - | chr2_3:16162775-16162794 | None:intergenic | 40.0% |
| ! | GAGCTTTGTATAGTGTAGCA+GGG | - | chr2_3:16162776-16162795 | None:intergenic | 40.0% |
| ! | AGAGCTTTGTATAGTGTAGC+AGG | - | chr2_3:16162777-16162796 | None:intergenic | 40.0% |
| !! | CATCAATAACCTTTGGGGTA+AGG | - | chr2_3:16162818-16162837 | None:intergenic | 40.0% |
| GATGGCATCAATAACCTTTG+GGG | - | chr2_3:16162823-16162842 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_3:16162852-16162871 | Msa0280990:CDS | 40.0% | |
| AACTCACATTCGTTGAAGGT+CGG | + | chr2_3:16162892-16162911 | Msa0280990:intron | 40.0% | |
| GCTTACAACTACAGCATTGT+TGG | + | chr2_3:16163149-16163168 | Msa0280990:CDS | 40.0% | |
| TACAACTACAGCATTGTTGG+AGG | + | chr2_3:16163152-16163171 | Msa0280990:CDS | 40.0% | |
| GAGATCTTCTCTATTGTGTC+TGG | - | chr2_3:16163188-16163207 | None:intergenic | 40.0% | |
| ! | TTTGAGGCTAAATTGTCTGC+AGG | + | chr2_3:16163209-16163228 | Msa0280990:CDS | 40.0% |
| AAATTGTCTGCAGGTCCAAA+TGG | + | chr2_3:16163218-16163237 | Msa0280990:CDS | 40.0% | |
| TTTGCAATGGATCCTCCATT+TGG | - | chr2_3:16163236-16163255 | None:intergenic | 40.0% | |
| AGATGTTACTCCTAGTGAAG+AGG | + | chr2_3:16163283-16163302 | Msa0280990:CDS | 40.0% | |
| !! | TAAGGGTGATGGTCTTTTCA+AGG | + | chr2_3:16163325-16163344 | Msa0280990:CDS | 40.0% |
| !! | TGGTCTTTTCAAGGCTATAG+AGG | + | chr2_3:16163334-16163353 | Msa0280990:CDS | 40.0% |
| !! | GGTCTTTTCAAGGCTATAGA+GGG | + | chr2_3:16163335-16163354 | Msa0280990:CDS | 40.0% |
| CCCTTGCAAGAGCAAACTTA+TGG | + | chr2_3:16161093-16161112 | Msa0280990:CDS | 45.0% | |
| AGTTTCAAGAGGAGCTGGAA+TGG | + | chr2_3:16161142-16161161 | Msa0280990:CDS | 45.0% | |
| ! | TGCTAATAGTAGAGAGCACG+TGG | + | chr2_3:16161227-16161246 | Msa0280990:intron | 45.0% |
| CTACTTGCCATTCCATCGAT+AGG | + | chr2_3:16161357-16161376 | Msa0280990:intron | 45.0% | |
| TTCTGACAACCTTACCCCAA+AGG | + | chr2_3:16162806-16162825 | Msa0280990:CDS | 45.0% | |
| GAAACGGATCAATGTGCAGA+TGG | + | chr2_3:16163074-16163093 | Msa0280990:intron | 45.0% | |
| CACTTTGTGCAACACATGCT+TGG | - | chr2_3:16163105-16163124 | None:intergenic | 45.0% | |
| CAAGCATGTGTTGCACAAAG+TGG | + | chr2_3:16163103-16163122 | Msa0280990:CDS | 45.0% | |
| ! | TACAGCATTGTTGGAGGTGT+TGG | + | chr2_3:16163158-16163177 | Msa0280990:CDS | 45.0% |
| CTCTTGAGTTCCTCTTCACT+AGG | - | chr2_3:16163296-16163315 | None:intergenic | 45.0% | |
| AGTGAAGAGGAACTCAAGAG+TGG | + | chr2_3:16163296-16163315 | Msa0280990:CDS | 45.0% | |
| ACTCAAGAGTGGCAAAGCTA+AGG | + | chr2_3:16163307-16163326 | Msa0280990:CDS | 45.0% | |
| CTCAAGAGTGGCAAAGCTAA+GGG | + | chr2_3:16163308-16163327 | Msa0280990:CDS | 45.0% | |
| GGCTATAGAGGGTTACTGTT+TGG | + | chr2_3:16163346-16163365 | Msa0280990:CDS | 45.0% | |
| CAACAAAAGGAAAGGGGGAA+AGG | - | chr2_3:16163495-16163514 | None:intergenic | 45.0% | |
| !!! | TTTTGTTAAAAATTTAAAAA+AGG | - | chr2_3:16161571-16161590 | None:intergenic | 5.0% |
| !! | AAAAAAGAAAAAAAATATTT+GGG | - | chr2_3:16162414-16162433 | None:intergenic | 5.0% |
| !!! | TTTTTCTTTAAAATTTAAAA+AGG | + | chr2_3:16162452-16162471 | Msa0280990:intron | 5.0% |
| TTGTCTGCAGGTCCAAATGG+AGG | + | chr2_3:16163221-16163240 | Msa0280990:CDS | 50.0% | |
| AGTGGCAAAGCTAAGGGTGA+TGG | + | chr2_3:16163314-16163333 | Msa0280990:CDS | 50.0% | |
| GGCACCCAAATTAAGCACAC+TGG | - | chr2_3:16163454-16163473 | None:intergenic | 50.0% | |
| TAGTGTAGCAGGGGCTACAG+TGG | - | chr2_3:16162766-16162785 | None:intergenic | 55.0% | |
| GTTGAAGGAAACGGTGGTGC+CGG | + | chr2_3:16162858-16162877 | Msa0280990:CDS | 55.0% | |
| TGTAGCAGGGGCTACAGTGG+AGG | - | chr2_3:16162763-16162782 | None:intergenic | 60.0% | |
| AGCAGGGGCTACAGTGGAGG+TGG | - | chr2_3:16162760-16162779 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 16161078 | 16163594 | 16161078 | ID=Msa0280990;Name=Msa0280990 |
| chr2_3 | mRNA | 16161078 | 16163594 | 16161078 | ID=Msa0280990-mRNA-1;Parent=Msa0280990;Name=Msa0280990-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.5|0.33|1|0.5|0.33|3|206|203 |
| chr2_3 | exon | 16161078 | 16161234 | 16161078 | ID=Msa0280990-mRNA-1:exon:6652;Parent=Msa0280990-mRNA-1 |
| chr2_3 | exon | 16162751 | 16162909 | 16162751 | ID=Msa0280990-mRNA-1:exon:6653;Parent=Msa0280990-mRNA-1 |
| chr2_3 | exon | 16163093 | 16163594 | 16163093 | ID=Msa0280990-mRNA-1:exon:6654;Parent=Msa0280990-mRNA-1 |
| chr2_3 | CDS | 16161078 | 16161234 | 16161078 | ID=Msa0280990-mRNA-1:cds;Parent=Msa0280990-mRNA-1 |
| chr2_3 | CDS | 16162751 | 16162909 | 16162751 | ID=Msa0280990-mRNA-1:cds;Parent=Msa0280990-mRNA-1 |
| chr2_3 | CDS | 16163093 | 16163388 | 16163093 | ID=Msa0280990-mRNA-1:cds;Parent=Msa0280990-mRNA-1 |
| chr2_3 | three_prime_UTR | 16163389 | 16163594 | 16163389 | ID=Msa0280990-mRNA-1:three_prime_utr;Parent=Msa0280990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
