Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517050 | XP_003602417.1 | 88.889 | 135 | 5 | 1 | 1 | 125 | 59 | 193 | 8.59e-77 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517050 | sp|P30707|RL9_PEA | 86.667 | 135 | 8 | 1 | 1 | 125 | 59 | 193 | 8.40e-78 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517050 | G7J9M6 | 88.889 | 135 | 5 | 1 | 1 | 125 | 59 | 193 | 4.10e-77 | 235 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003780 | Msa0517050 | 0.820507 | 6.613570e-53 | -8.615850e-47 |
| Msa0022970 | Msa0517050 | 0.802227 | 6.199988e-49 | -8.615850e-47 |
| Msa0027260 | Msa0517050 | 0.840482 | 8.465789e-58 | -8.615850e-47 |
| Msa0029270 | Msa0517050 | 0.829755 | 4.309697e-55 | -8.615850e-47 |
| Msa0032090 | Msa0517050 | 0.833349 | 5.612041e-56 | -8.615850e-47 |
| Msa0032260 | Msa0517050 | 0.800247 | 1.576167e-48 | -8.615850e-47 |
| Msa0032430 | Msa0517050 | 0.814663 | 1.373976e-51 | -8.615850e-47 |
| Msa0032580 | Msa0517050 | 0.837942 | 3.858053e-57 | -8.615850e-47 |
| Msa0033110 | Msa0517050 | 0.815168 | 1.061660e-51 | -8.615850e-47 |
| Msa0033260 | Msa0517050 | 0.811320 | 7.426232e-51 | -8.615850e-47 |
| Msa0040690 | Msa0517050 | 0.866073 | 3.721651e-65 | -8.615850e-47 |
| Msa0043660 | Msa0517050 | 0.829921 | 3.927462e-55 | -8.615850e-47 |
| Msa0047160 | Msa0517050 | 0.834363 | 3.129265e-56 | -8.615850e-47 |
| Msa0048180 | Msa0517050 | 0.810533 | 1.099561e-50 | -8.615850e-47 |
| Msa0074320 | Msa0517050 | 0.803798 | 2.934732e-49 | -8.615850e-47 |
| Msa0079380 | Msa0517050 | 0.805044 | 1.614509e-49 | -8.615850e-47 |
| Msa0080200 | Msa0517050 | 0.800660 | 1.298763e-48 | -8.615850e-47 |
| Msa0091410 | Msa0517050 | 0.813878 | 2.048020e-51 | -8.615850e-47 |
| Msa0094470 | Msa0517050 | 0.829418 | 5.206109e-55 | -8.615850e-47 |
| Msa0118710 | Msa0517050 | 0.809665 | 1.690865e-50 | -8.615850e-47 |
| Msa0127050 | Msa0517050 | 0.830482 | 2.865061e-55 | -8.615850e-47 |
| Msa0127310 | Msa0517050 | 0.814658 | 1.377005e-51 | -8.615850e-47 |
| Msa0128860 | Msa0517050 | 0.815417 | 9.343304e-52 | -8.615850e-47 |
| Msa0136070 | Msa0517050 | 0.803673 | 3.115825e-49 | -8.615850e-47 |
| Msa0137550 | Msa0517050 | 0.818566 | 1.833728e-52 | -8.615850e-47 |
| Msa0160550 | Msa0517050 | 0.804130 | 2.504072e-49 | -8.615850e-47 |
| Msa0169310 | Msa0517050 | 0.825733 | 3.991149e-54 | -8.615850e-47 |
| Msa0172070 | Msa0517050 | 0.815430 | 9.283891e-52 | -8.615850e-47 |
| Msa0172970 | Msa0517050 | 0.838034 | 3.653574e-57 | -8.615850e-47 |
| Msa0174730 | Msa0517050 | 0.814915 | 1.207896e-51 | -8.615850e-47 |
| Msa0180020 | Msa0517050 | 0.810700 | 1.011841e-50 | -8.615850e-47 |
| Msa0187930 | Msa0517050 | 0.811600 | 6.456756e-51 | -8.615850e-47 |
| Msa0189300 | Msa0517050 | 0.823780 | 1.151664e-53 | -8.615850e-47 |
| Msa0194540 | Msa0517050 | 0.812930 | 3.308455e-51 | -8.615850e-47 |
| Msa0220720 | Msa0517050 | 0.815242 | 1.022180e-51 | -8.615850e-47 |
| Msa0231100 | Msa0517050 | 0.805930 | 1.052212e-49 | -8.615850e-47 |
| Msa0231660 | Msa0517050 | 0.815587 | 8.566662e-52 | -8.615850e-47 |
| Msa0385580 | Msa0517050 | 0.830638 | 2.623646e-55 | -8.615850e-47 |
| Msa0244780 | Msa0517050 | 0.812489 | 4.131970e-51 | -8.615850e-47 |
| Msa0262310 | Msa0517050 | 0.823015 | 1.739072e-53 | -8.615850e-47 |
| Msa0268130 | Msa0517050 | 0.815555 | 8.707284e-52 | -8.615850e-47 |
| Msa0289580 | Msa0517050 | 0.809770 | 1.605391e-50 | -8.615850e-47 |
| Msa0289610 | Msa0517050 | 0.817888 | 2.609812e-52 | -8.615850e-47 |
| Msa0298140 | Msa0517050 | 0.832059 | 1.173373e-55 | -8.615850e-47 |
| Msa0298990 | Msa0517050 | 0.815291 | 9.968252e-52 | -8.615850e-47 |
| Msa0299870 | Msa0517050 | 0.819453 | 1.152282e-52 | -8.615850e-47 |
| Msa0309750 | Msa0517050 | 0.807014 | 6.214624e-50 | -8.615850e-47 |
| Msa0327300 | Msa0517050 | 0.812393 | 4.337528e-51 | -8.615850e-47 |
| Msa0327330 | Msa0517050 | 0.810778 | 9.730454e-51 | -8.615850e-47 |
| Msa0337240 | Msa0517050 | 0.812567 | 3.972011e-51 | -8.615850e-47 |
| Msa0337650 | Msa0517050 | 0.825245 | 5.207137e-54 | -8.615850e-47 |
| Msa0357900 | Msa0517050 | 0.807109 | 5.935382e-50 | -8.615850e-47 |
| Msa0517050 | Msa0526540 | 0.832942 | 7.085447e-56 | -8.615850e-47 |
| Msa0517050 | Msa0571920 | 0.812156 | 4.884014e-51 | -8.615850e-47 |
| Msa0517050 | Msa0576940 | 0.822598 | 2.173956e-53 | -8.615850e-47 |
| Msa0517050 | Msa0581280 | 0.806401 | 8.373328e-50 | -8.615850e-47 |
| Msa0517050 | Msa0601150 | 0.814490 | 1.500075e-51 | -8.615850e-47 |
| Msa0517050 | Msa0608500 | 0.800487 | 1.408608e-48 | -8.615850e-47 |
| Msa0517050 | Msa0615440 | 0.861032 | 1.364257e-63 | -8.615850e-47 |
| Msa0517050 | Msa0623790 | 0.813549 | 2.419805e-51 | -8.615850e-47 |
| Msa0517050 | Msa0643560 | 0.826694 | 2.357298e-54 | -8.615850e-47 |
| Msa0517050 | Msa0677290 | 0.800879 | 1.171734e-48 | -8.615850e-47 |
| Msa0517050 | Msa0689260 | 0.822783 | 1.969113e-53 | -8.615850e-47 |
| Msa0517050 | Msa0698490 | 0.862725 | 4.135646e-64 | -8.615850e-47 |
| Msa0517050 | Msa0698660 | 0.861516 | 9.713131e-64 | -8.615850e-47 |
| Msa0517050 | Msa0698800 | 0.807524 | 4.846193e-50 | -8.615850e-47 |
| Msa0517050 | Msa0711780 | 0.808167 | 3.536977e-50 | -8.615850e-47 |
| Msa0517050 | Msa0715700 | 0.803002 | 4.290374e-49 | -8.615850e-47 |
| Msa0517050 | Msa0719420 | 0.802363 | 5.813620e-49 | -8.615850e-47 |
| Msa0517050 | Msa0753140 | 0.804527 | 2.069635e-49 | -8.615850e-47 |
| Msa0517050 | Msa0789680 | 0.804905 | 1.725854e-49 | -8.615850e-47 |
| Msa0517050 | Msa0794670 | 0.801703 | 7.944644e-49 | -8.615850e-47 |
| Msa0517050 | Msa0802410 | 0.813392 | 2.620341e-51 | -8.615850e-47 |
| Msa0517050 | Msa0830540 | 0.808533 | 2.955882e-50 | -8.615850e-47 |
| Msa0517050 | Msa0902760 | 0.804091 | 2.550814e-49 | -8.615850e-47 |
| Msa0517050 | Msa0968590 | 0.819196 | 1.318308e-52 | -8.615850e-47 |
| Msa0517050 | Msa0989540 | 0.830284 | 3.203136e-55 | -8.615850e-47 |
| Msa0517050 | Msa0999970 | 0.804367 | 2.234831e-49 | -8.615850e-47 |
| Msa0517050 | Msa1006840 | 0.830025 | 3.703731e-55 | -8.615850e-47 |
| Msa0517050 | Msa1013400 | 0.810385 | 1.183341e-50 | -8.615850e-47 |
| Msa0517050 | Msa1019240 | 0.826517 | 2.598092e-54 | -8.615850e-47 |
| Msa0517050 | Msa1019260 | 0.826935 | 2.064855e-54 | -8.615850e-47 |
| Msa0517050 | Msa1030620 | 0.813474 | 2.513758e-51 | -8.615850e-47 |
| Msa0517050 | Msa1043690 | 0.836911 | 7.090807e-57 | -8.615850e-47 |
| Msa0517050 | Msa1077030 | 0.808060 | 3.727621e-50 | -8.615850e-47 |
| Msa0517050 | Msa1081150 | 0.817037 | 4.059597e-52 | -8.615850e-47 |
| Msa0517050 | Msa1084470 | 0.800804 | 1.213533e-48 | -8.615850e-47 |
| Msa0517050 | Msa1093530 | 0.804150 | 2.480070e-49 | -8.615850e-47 |
| Msa0517050 | Msa1104140 | 0.853059 | 3.069416e-61 | -8.615850e-47 |
| Msa0517050 | Msa1104210 | 0.829400 | 5.257076e-55 | -8.615850e-47 |
| Msa0517050 | Msa1106700 | 0.804666 | 1.935750e-49 | -8.615850e-47 |
| Msa0517050 | Msa1166860 | 0.800606 | 1.331928e-48 | -8.615850e-47 |
| Msa0517050 | Msa1209200 | 0.814409 | 1.563718e-51 | -8.615850e-47 |
| Msa0517050 | Msa1218600 | 0.804293 | 2.315440e-49 | -8.615850e-47 |
| Msa0517050 | Msa1262890 | 0.811230 | 7.766380e-51 | -8.615850e-47 |
| Msa0517050 | Msa1265630 | 0.834044 | 3.762874e-56 | -8.615850e-47 |
| Msa0517050 | Msa1302850 | 0.800631 | 1.316531e-48 | -8.615850e-47 |
| Msa0517050 | Msa1358250 | 0.823500 | 1.339917e-53 | -8.615850e-47 |
| Msa0517050 | Msa1363330 | 0.835247 | 1.874911e-56 | -8.615850e-47 |
| Msa0517050 | Msa1374120 | 0.857077 | 2.086016e-62 | -8.615850e-47 |
| Msa0517050 | Msa1379760 | 0.815907 | 7.268108e-52 | -8.615850e-47 |
| Msa0517050 | Msa1382560 | 0.804342 | 2.261670e-49 | -8.615850e-47 |
| Msa0517050 | Msa1382620 | 0.832631 | 8.468637e-56 | -8.615850e-47 |
| Msa0517050 | Msa1386600 | 0.834630 | 2.681385e-56 | -8.615850e-47 |
| Msa0517050 | Msa1392780 | 0.812967 | 3.246790e-51 | -8.615850e-47 |
| Msa0517050 | Msa1394290 | 0.839043 | 2.006617e-57 | -8.615850e-47 |
| Msa0517050 | Msa1399530 | 0.817056 | 4.019532e-52 | -8.615850e-47 |
| Msa0517050 | Msa1423350 | 0.819132 | 1.363328e-52 | -8.615850e-47 |
| Msa0517050 | Msa1432700 | 0.816240 | 6.122791e-52 | -8.615850e-47 |
| Msa0517050 | Msa1448690 | 0.808511 | 2.987657e-50 | -8.615850e-47 |
| Msa0517050 | Msa1457920 | 0.834075 | 3.697056e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517050 | MtrunA17_Chr3g0128201 | 88.889 | 135 | 5 | 1 | 1 | 125 | 59 | 193 | 7.90e-81 | 235 |
| Msa0517050 | MtrunA17_Chr5g0428861 | 76.119 | 134 | 22 | 1 | 1 | 124 | 59 | 192 | 8.73e-72 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517050 | AT1G33140.1 | 77.037 | 135 | 21 | 1 | 1 | 125 | 60 | 194 | 2.22e-71 | 212 |
| Msa0517050 | AT1G33120.1 | 77.037 | 135 | 21 | 1 | 1 | 125 | 60 | 194 | 2.22e-71 | 212 |
| Msa0517050 | AT4G10450.1 | 74.815 | 135 | 24 | 1 | 1 | 125 | 60 | 194 | 8.43e-70 | 208 |
| Msa0517050 | AT4G10450.2 | 72.897 | 107 | 19 | 1 | 1 | 97 | 60 | 166 | 9.13e-52 | 161 |
Find 36 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGATGCTTGGTTTGGTTCC+AGG | 0.300629 | 3_4:-68572129 | Msa0517050:CDS |
| GGTGAAGGATGAGGTTGTTT+TGG | 0.319250 | 3_4:-68571512 | Msa0517050:CDS |
| CTCAAGATCGATGCTTGGTT+TGG | 0.321969 | 3_4:-68572136 | None:intergenic |
| ATGACATTGAGCTTGTTTCT+AGG | 0.326351 | 3_4:-68571483 | Msa0517050:CDS |
| CTCAATCGACTTGTTGTCAT+TGG | 0.358658 | 3_4:+68571982 | None:intergenic |
| GGTATTTATGTTAGTGAGAA+GGG | 0.433044 | 3_4:-68571301 | Msa0517050:CDS |
| ATTGGTGATGCTAGCGTTGA+TGG | 0.438976 | 3_4:+68572000 | None:intergenic |
| CATGTTAAGAAGAAGGATAT+CGG | 0.445187 | 3_4:-68571337 | Msa0517050:CDS |
| CGATATCCTTCTTCTTAACA+TGG | 0.447635 | 3_4:+68571338 | None:intergenic |
| AGGAAAGTAGATTTGCTTGA+TGG | 0.454716 | 3_4:-68571559 | Msa0517050:CDS |
| AGCAGTTCTGATGGCGGCGG+AGG | 0.457127 | 3_4:+68572102 | None:intergenic |
| TTCTTCTCAAGATCGATGCT+TGG | 0.472069 | 3_4:-68572141 | None:intergenic |
| GATATCGGGAAGTTTCTTGA+TGG | 0.479105 | 3_4:-68571322 | Msa0517050:CDS |
| GAAATGCCATGTTAAGAAGA+AGG | 0.499506 | 3_4:-68571344 | Msa0517050:CDS |
| ATTTACTAGTTTGAGATATG+TGG | 0.506984 | 3_4:-68571611 | Msa0517050:intron |
| TTCAATTGTTCGATCTGAGA+AGG | 0.526562 | 3_4:-68571533 | Msa0517050:CDS |
| ATGTTAAGAAGAAGGATATC+GGG | 0.529482 | 3_4:-68571336 | Msa0517050:CDS |
| TGGTATTTATGTTAGTGAGA+AGG | 0.531892 | 3_4:-68571302 | Msa0517050:CDS |
| TTGGTGATGCTAGCGTTGAT+GGG | 0.543746 | 3_4:+68572001 | None:intergenic |
| TTATGTTAGTGAGAAGGGAT+CGG | 0.552761 | 3_4:-68571296 | Msa0517050:CDS |
| CACGTTGAGACTCTCATCAC+TGG | 0.557442 | 3_4:-68572073 | Msa0517050:CDS |
| CATCTTGTAGCGGAAACCCT+TGG | 0.558729 | 3_4:+68572045 | None:intergenic |
| AGGGTTTCCGCTACAAGATG+AGG | 0.564650 | 3_4:-68572042 | Msa0517050:CDS |
| ATCTGAGAAGGTGAAGGATG+AGG | 0.567425 | 3_4:-68571521 | Msa0517050:CDS |
| GAGAGCAGTTCTGATGGCGG+CGG | 0.574544 | 3_4:+68572099 | None:intergenic |
| CTCATCACTGGTGTTACCAA+GGG | 0.576805 | 3_4:-68572061 | Msa0517050:CDS |
| GTGGCTGAGAGCAGTTCTGA+TGG | 0.581831 | 3_4:+68572093 | None:intergenic |
| TCTCATCACTGGTGTTACCA+AGG | 0.605297 | 3_4:-68572062 | Msa0517050:CDS |
| GTCATGTGCACTTATTAACC+AGG | 0.625933 | 3_4:-68571461 | Msa0517050:intron |
| TGTTCGATCTGAGAAGGTGA+AGG | 0.628133 | 3_4:-68571527 | Msa0517050:CDS |
| TGTTAGTGAGAAGGGATCGG+TGG | 0.651106 | 3_4:-68571293 | Msa0517050:CDS |
| GGTGGTAACTGAAGAATAGA+CGG | 0.652710 | 3_4:-68571275 | Msa0517050:exon |
| TGGTGATGCTAGCGTTGATG+GGG | 0.676063 | 3_4:+68572002 | None:intergenic |
| GCTGAGAGCAGTTCTGATGG+CGG | 0.677632 | 3_4:+68572096 | None:intergenic |
| ACACAAACCTCATCTTGTAG+CGG | 0.691692 | 3_4:+68572035 | None:intergenic |
| CAGTGATGAGAGTCTCAACG+TGG | 0.770839 | 3_4:+68572074 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTCTTCAATTTT+AGG | - | chr3_4:68571500-68571519 | Msa0517050:CDS | 10.0% |
| !! | TATAAATTAGATTAAAACTA+GGG | + | chr3_4:68571567-68571586 | None:intergenic | 10.0% |
| !! | TTATAAATTAGATTAAAACT+AGG | + | chr3_4:68571568-68571587 | None:intergenic | 10.0% |
| !!! | ATGAGTTAATTTTTTTATTT+TGG | - | chr3_4:68571710-68571729 | Msa0517050:intron | 10.0% |
| !!! | ATTTTTATTTCTTCAATTTT+AGG | - | chr3_4:68571500-68571519 | Msa0517050:CDS | 10.0% |
| !! | TATAAATTAGATTAAAACTA+GGG | + | chr3_4:68571567-68571586 | None:intergenic | 10.0% |
| !! | TTATAAATTAGATTAAAACT+AGG | + | chr3_4:68571568-68571587 | None:intergenic | 10.0% |
| !!! | ATGAGTTAATTTTTTTATTT+TGG | - | chr3_4:68571710-68571729 | Msa0517050:intron | 10.0% |
| !! | TAAAATTGCATAAAACAACA+AGG | + | chr3_4:68571534-68571553 | None:intergenic | 20.0% |
| !! | TAAAATTGCATAAAACAACA+AGG | + | chr3_4:68571534-68571553 | None:intergenic | 20.0% |
| !! | ATTGAGATCTGAAACTTTAT+TGG | - | chr3_4:68571435-68571454 | Msa0517050:intron | 25.0% |
| ! | GAGATAATGTCTGATTTATT+TGG | - | chr3_4:68571744-68571763 | Msa0517050:intron | 25.0% |
| !! | ATTTACTAGTTTGAGATATG+TGG | - | chr3_4:68571789-68571808 | Msa0517050:intron | 25.0% |
| ! | GAATCGAATAATGTTGTATT+AGG | - | chr3_4:68571816-68571835 | Msa0517050:intron | 25.0% |
| ! | ACAAAAATAAAGCATGTTCA+TGG | + | chr3_4:68571983-68572002 | None:intergenic | 25.0% |
| !! | ATTGAGATCTGAAACTTTAT+TGG | - | chr3_4:68571435-68571454 | Msa0517050:intron | 25.0% |
| ! | GAGATAATGTCTGATTTATT+TGG | - | chr3_4:68571744-68571763 | Msa0517050:intron | 25.0% |
| !! | ATTTACTAGTTTGAGATATG+TGG | - | chr3_4:68571789-68571808 | Msa0517050:intron | 25.0% |
| ! | GAATCGAATAATGTTGTATT+AGG | - | chr3_4:68571816-68571835 | Msa0517050:intron | 25.0% |
| ! | ACAAAAATAAAGCATGTTCA+TGG | + | chr3_4:68571983-68572002 | None:intergenic | 25.0% |
| AAACTTTATTGGAGAGAAGA+AGG | - | chr3_4:68571446-68571465 | Msa0517050:intron | 30.0% | |
| GTCTGATTTATTTGGTTATC+TGG | - | chr3_4:68571752-68571771 | Msa0517050:intron | 30.0% | |
| GAATAATGTTGTATTAGGTG+AGG | - | chr3_4:68571821-68571840 | Msa0517050:intron | 30.0% | |
| !! | GAATGTTGTTGTTGTGTTTT+TGG | - | chr3_4:68572029-68572048 | Msa0517050:CDS | 30.0% |
| CATGTTAAGAAGAAGGATAT+CGG | - | chr3_4:68572063-68572082 | Msa0517050:CDS | 30.0% | |
| ATGTTAAGAAGAAGGATATC+GGG | - | chr3_4:68572064-68572083 | Msa0517050:CDS | 30.0% | |
| TGGTATTTATGTTAGTGAGA+AGG | - | chr3_4:68572098-68572117 | Msa0517050:CDS | 30.0% | |
| GGTATTTATGTTAGTGAGAA+GGG | - | chr3_4:68572099-68572118 | Msa0517050:CDS | 30.0% | |
| AAACTTTATTGGAGAGAAGA+AGG | - | chr3_4:68571446-68571465 | Msa0517050:intron | 30.0% | |
| GTCTGATTTATTTGGTTATC+TGG | - | chr3_4:68571752-68571771 | Msa0517050:intron | 30.0% | |
| GAATAATGTTGTATTAGGTG+AGG | - | chr3_4:68571821-68571840 | Msa0517050:intron | 30.0% | |
| !! | GAATGTTGTTGTTGTGTTTT+TGG | - | chr3_4:68572029-68572048 | Msa0517050:CDS | 30.0% |
| CATGTTAAGAAGAAGGATAT+CGG | - | chr3_4:68572063-68572082 | Msa0517050:CDS | 30.0% | |
| ATGTTAAGAAGAAGGATATC+GGG | - | chr3_4:68572064-68572083 | Msa0517050:CDS | 30.0% | |
| TGGTATTTATGTTAGTGAGA+AGG | - | chr3_4:68572098-68572117 | Msa0517050:CDS | 30.0% | |
| GGTATTTATGTTAGTGAGAA+GGG | - | chr3_4:68572099-68572118 | Msa0517050:CDS | 30.0% | |
| ! | AGGAAAGTAGATTTGCTTGA+TGG | - | chr3_4:68571841-68571860 | Msa0517050:intron | 35.0% |
| TTCAATTGTTCGATCTGAGA+AGG | - | chr3_4:68571867-68571886 | Msa0517050:intron | 35.0% | |
| ! | ATGACATTGAGCTTGTTTCT+AGG | - | chr3_4:68571917-68571936 | Msa0517050:intron | 35.0% |
| ATGTTCATGGACCATGTTAA+GGG | + | chr3_4:68571970-68571989 | None:intergenic | 35.0% | |
| GAAATGCCATGTTAAGAAGA+AGG | - | chr3_4:68572056-68572075 | Msa0517050:CDS | 35.0% | |
| CGATATCCTTCTTCTTAACA+TGG | + | chr3_4:68572065-68572084 | None:intergenic | 35.0% | |
| TTATGTTAGTGAGAAGGGAT+CGG | - | chr3_4:68572104-68572123 | Msa0517050:CDS | 35.0% | |
| ! | AGGAAAGTAGATTTGCTTGA+TGG | - | chr3_4:68571841-68571860 | Msa0517050:intron | 35.0% |
| TTCAATTGTTCGATCTGAGA+AGG | - | chr3_4:68571867-68571886 | Msa0517050:intron | 35.0% | |
| ! | ATGACATTGAGCTTGTTTCT+AGG | - | chr3_4:68571917-68571936 | Msa0517050:intron | 35.0% |
| ATGTTCATGGACCATGTTAA+GGG | + | chr3_4:68571970-68571989 | None:intergenic | 35.0% | |
| GAAATGCCATGTTAAGAAGA+AGG | - | chr3_4:68572056-68572075 | Msa0517050:CDS | 35.0% | |
| CGATATCCTTCTTCTTAACA+TGG | + | chr3_4:68572065-68572084 | None:intergenic | 35.0% | |
| TTATGTTAGTGAGAAGGGAT+CGG | - | chr3_4:68572104-68572123 | Msa0517050:CDS | 35.0% | |
| ACACAAACCTCATCTTGTAG+CGG | + | chr3_4:68571368-68571387 | None:intergenic | 40.0% | |
| !! | CTCAATCGACTTGTTGTCAT+TGG | + | chr3_4:68571421-68571440 | None:intergenic | 40.0% |
| !!! | AAGGATGAGGTTGTTTTGGA+TGG | - | chr3_4:68571892-68571911 | Msa0517050:intron | 40.0% |
| GTCATGTGCACTTATTAACC+AGG | - | chr3_4:68571939-68571958 | Msa0517050:intron | 40.0% | |
| TGTTCATGGACCATGTTAAG+GGG | + | chr3_4:68571969-68571988 | None:intergenic | 40.0% | |
| CATGTTCATGGACCATGTTA+AGG | + | chr3_4:68571971-68571990 | None:intergenic | 40.0% | |
| GATATCGGGAAGTTTCTTGA+TGG | - | chr3_4:68572078-68572097 | Msa0517050:CDS | 40.0% | |
| GGTGGTAACTGAAGAATAGA+CGG | - | chr3_4:68572125-68572144 | Msa0517050:CDS | 40.0% | |
| ACACAAACCTCATCTTGTAG+CGG | + | chr3_4:68571368-68571387 | None:intergenic | 40.0% | |
| !! | CTCAATCGACTTGTTGTCAT+TGG | + | chr3_4:68571421-68571440 | None:intergenic | 40.0% |
| !!! | AAGGATGAGGTTGTTTTGGA+TGG | - | chr3_4:68571892-68571911 | Msa0517050:intron | 40.0% |
| GTCATGTGCACTTATTAACC+AGG | - | chr3_4:68571939-68571958 | Msa0517050:intron | 40.0% | |
| TGTTCATGGACCATGTTAAG+GGG | + | chr3_4:68571969-68571988 | None:intergenic | 40.0% | |
| CATGTTCATGGACCATGTTA+AGG | + | chr3_4:68571971-68571990 | None:intergenic | 40.0% | |
| GATATCGGGAAGTTTCTTGA+TGG | - | chr3_4:68572078-68572097 | Msa0517050:CDS | 40.0% | |
| GGTGGTAACTGAAGAATAGA+CGG | - | chr3_4:68572125-68572144 | Msa0517050:CDS | 40.0% | |
| !! | TCTCATCACTGGTGTTACCA+AGG | - | chr3_4:68571338-68571357 | Msa0517050:CDS | 45.0% |
| !! | CTCATCACTGGTGTTACCAA+GGG | - | chr3_4:68571339-68571358 | Msa0517050:CDS | 45.0% |
| !! | TTGGTGATGCTAGCGTTGAT+GGG | + | chr3_4:68571402-68571421 | None:intergenic | 45.0% |
| !! | ATTGGTGATGCTAGCGTTGA+TGG | + | chr3_4:68571403-68571422 | None:intergenic | 45.0% |
| TGTTCGATCTGAGAAGGTGA+AGG | - | chr3_4:68571873-68571892 | Msa0517050:intron | 45.0% | |
| ATCTGAGAAGGTGAAGGATG+AGG | - | chr3_4:68571879-68571898 | Msa0517050:intron | 45.0% | |
| ! | GGTGAAGGATGAGGTTGTTT+TGG | - | chr3_4:68571888-68571907 | Msa0517050:intron | 45.0% |
| !! | TCTCATCACTGGTGTTACCA+AGG | - | chr3_4:68571338-68571357 | Msa0517050:CDS | 45.0% |
| !! | CTCATCACTGGTGTTACCAA+GGG | - | chr3_4:68571339-68571358 | Msa0517050:CDS | 45.0% |
| !! | TTGGTGATGCTAGCGTTGAT+GGG | + | chr3_4:68571402-68571421 | None:intergenic | 45.0% |
| !! | ATTGGTGATGCTAGCGTTGA+TGG | + | chr3_4:68571403-68571422 | None:intergenic | 45.0% |
| TGTTCGATCTGAGAAGGTGA+AGG | - | chr3_4:68571873-68571892 | Msa0517050:intron | 45.0% | |
| ATCTGAGAAGGTGAAGGATG+AGG | - | chr3_4:68571879-68571898 | Msa0517050:intron | 45.0% | |
| ! | GGTGAAGGATGAGGTTGTTT+TGG | - | chr3_4:68571888-68571907 | Msa0517050:intron | 45.0% |
| !! | TCGATGCTTGGTTTGGTTCC+AGG | - | chr3_4:68571271-68571290 | Msa0517050:exon | 50.0% |
| CAGTGATGAGAGTCTCAACG+TGG | + | chr3_4:68571329-68571348 | None:intergenic | 50.0% | |
| CACGTTGAGACTCTCATCAC+TGG | - | chr3_4:68571327-68571346 | Msa0517050:CDS | 50.0% | |
| ! | CATCTTGTAGCGGAAACCCT+TGG | + | chr3_4:68571358-68571377 | None:intergenic | 50.0% |
| AGGGTTTCCGCTACAAGATG+AGG | - | chr3_4:68571358-68571377 | Msa0517050:intron | 50.0% | |
| !! | TGGTGATGCTAGCGTTGATG+GGG | + | chr3_4:68571401-68571420 | None:intergenic | 50.0% |
| ACCAGGTACACCCCTTAACA+TGG | - | chr3_4:68571956-68571975 | Msa0517050:intron | 50.0% | |
| ! | ACCATGTTAAGGGGTGTACC+TGG | + | chr3_4:68571960-68571979 | None:intergenic | 50.0% |
| TGTTAGTGAGAAGGGATCGG+TGG | - | chr3_4:68572107-68572126 | Msa0517050:CDS | 50.0% | |
| !! | TCGATGCTTGGTTTGGTTCC+AGG | - | chr3_4:68571271-68571290 | Msa0517050:exon | 50.0% |
| CAGTGATGAGAGTCTCAACG+TGG | + | chr3_4:68571329-68571348 | None:intergenic | 50.0% | |
| CACGTTGAGACTCTCATCAC+TGG | - | chr3_4:68571327-68571346 | Msa0517050:CDS | 50.0% | |
| ! | CATCTTGTAGCGGAAACCCT+TGG | + | chr3_4:68571358-68571377 | None:intergenic | 50.0% |
| AGGGTTTCCGCTACAAGATG+AGG | - | chr3_4:68571358-68571377 | Msa0517050:intron | 50.0% | |
| !! | TGGTGATGCTAGCGTTGATG+GGG | + | chr3_4:68571401-68571420 | None:intergenic | 50.0% |
| ACCAGGTACACCCCTTAACA+TGG | - | chr3_4:68571956-68571975 | Msa0517050:intron | 50.0% | |
| ! | ACCATGTTAAGGGGTGTACC+TGG | + | chr3_4:68571960-68571979 | None:intergenic | 50.0% |
| TGTTAGTGAGAAGGGATCGG+TGG | - | chr3_4:68572107-68572126 | Msa0517050:CDS | 50.0% | |
| ! | GCTGAGAGCAGTTCTGATGG+CGG | + | chr3_4:68571307-68571326 | None:intergenic | 55.0% |
| ! | GTGGCTGAGAGCAGTTCTGA+TGG | + | chr3_4:68571310-68571329 | None:intergenic | 55.0% |
| ! | GCTGAGAGCAGTTCTGATGG+CGG | + | chr3_4:68571307-68571326 | None:intergenic | 55.0% |
| ! | GTGGCTGAGAGCAGTTCTGA+TGG | + | chr3_4:68571310-68571329 | None:intergenic | 55.0% |
| !! | GAGAGCAGTTCTGATGGCGG+CGG | + | chr3_4:68571304-68571323 | None:intergenic | 60.0% |
| !! | GAGAGCAGTTCTGATGGCGG+CGG | + | chr3_4:68571304-68571323 | None:intergenic | 60.0% |
| !! | GATGGCGGCGGAGGTTTTCC+TGG | + | chr3_4:68571292-68571311 | None:intergenic | 65.0% |
| !! | AGCAGTTCTGATGGCGGCGG+AGG | + | chr3_4:68571301-68571320 | None:intergenic | 65.0% |
| !! | GATGGCGGCGGAGGTTTTCC+TGG | + | chr3_4:68571292-68571311 | None:intergenic | 65.0% |
| !! | AGCAGTTCTGATGGCGGCGG+AGG | + | chr3_4:68571301-68571320 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68571270 | 68572152 | 68571270 | ID=Msa0517050;Name=Msa0517050 |
| chr3_4 | mRNA | 68571270 | 68572152 | 68571270 | ID=Msa0517050-mRNA-1;Parent=Msa0517050;Name=Msa0517050-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.33|0.5|1|0.33|0.5|4|9|125 |
| chr3_4 | exon | 68571270 | 68571365 | 68571270 | ID=Msa0517050-mRNA-1:exon:18126;Parent=Msa0517050-mRNA-1 |
| chr3_4 | exon | 68571462 | 68571584 | 68571462 | ID=Msa0517050-mRNA-1:exon:18125;Parent=Msa0517050-mRNA-1 |
| chr3_4 | exon | 68571612 | 68571618 | 68571612 | ID=Msa0517050-mRNA-1:exon:18124;Parent=Msa0517050-mRNA-1 |
| chr3_4 | exon | 68571992 | 68572152 | 68571992 | ID=Msa0517050-mRNA-1:exon:18123;Parent=Msa0517050-mRNA-1 |
| chr3_4 | CDS | 68571992 | 68572152 | 68571992 | ID=Msa0517050-mRNA-1:cds;Parent=Msa0517050-mRNA-1 |
| chr3_4 | CDS | 68571612 | 68571618 | 68571612 | ID=Msa0517050-mRNA-1:cds;Parent=Msa0517050-mRNA-1 |
| chr3_4 | CDS | 68571462 | 68571584 | 68571462 | ID=Msa0517050-mRNA-1:cds;Parent=Msa0517050-mRNA-1 |
| chr3_4 | CDS | 68571279 | 68571365 | 68571279 | ID=Msa0517050-mRNA-1:cds;Parent=Msa0517050-mRNA-1 |
| chr3_4 | three_prime_UTR | 68571270 | 68571278 | 68571270 | ID=Msa0517050-mRNA-1:three_prime_utr;Parent=Msa0517050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
