Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780490 | XP_003611340.1 | 100.000 | 216 | 0 | 0 | 45 | 260 | 1 | 216 | 9.96e-156 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780490 | sp|Q8VZB9|R10A1_ARATH | 89.815 | 216 | 22 | 0 | 45 | 260 | 1 | 216 | 3.49e-129 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780490 | G7JXE1 | 100.000 | 216 | 0 | 0 | 45 | 260 | 1 | 216 | 4.76e-156 | 442 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0780490 | 0.839359 | 1.661388e-57 | -8.615850e-47 |
| Msa0002790 | Msa0780490 | 0.845262 | 4.532333e-59 | -8.615850e-47 |
| Msa0003780 | Msa0780490 | 0.841220 | 5.421856e-58 | -8.615850e-47 |
| Msa0022970 | Msa0780490 | 0.872901 | 2.227464e-67 | -8.615850e-47 |
| Msa0040690 | Msa0780490 | 0.837312 | 5.598212e-57 | -8.615850e-47 |
| Msa0045730 | Msa0780490 | 0.840768 | 7.126047e-58 | -8.615850e-47 |
| Msa0047160 | Msa0780490 | 0.825120 | 5.572902e-54 | -8.615850e-47 |
| Msa0079820 | Msa0780490 | 0.801225 | 9.955552e-49 | -8.615850e-47 |
| Msa0086750 | Msa0780490 | 0.811117 | 8.219890e-51 | -8.615850e-47 |
| Msa0091880 | Msa0780490 | 0.892042 | 2.284014e-74 | -8.615850e-47 |
| Msa0094470 | Msa0780490 | 0.806305 | 8.775150e-50 | -8.615850e-47 |
| Msa0116130 | Msa0780490 | 0.841689 | 4.080901e-58 | -8.615850e-47 |
| Msa0116670 | Msa0780490 | 0.820816 | 5.616713e-53 | -8.615850e-47 |
| Msa0118710 | Msa0780490 | 0.841266 | 5.275023e-58 | -8.615850e-47 |
| Msa0603320 | Msa0780490 | 0.812614 | 3.879504e-51 | -8.615850e-47 |
| Msa0621950 | Msa0780490 | 0.800421 | 1.452462e-48 | -8.615850e-47 |
| Msa0622750 | Msa0780490 | 0.840174 | 1.019410e-57 | -8.615850e-47 |
| Msa0623200 | Msa0780490 | 0.861239 | 1.179459e-63 | -8.615850e-47 |
| Msa0688850 | Msa0780490 | 0.840355 | 9.142628e-58 | -8.615850e-47 |
| Msa0698660 | Msa0780490 | 0.800399 | 1.467987e-48 | -8.615850e-47 |
| Msa0719420 | Msa0780490 | 0.816150 | 6.415097e-52 | -8.615850e-47 |
| Msa0780490 | Msa0789680 | 0.817359 | 3.435839e-52 | -8.615850e-47 |
| Msa0780490 | Msa0953310 | 0.801008 | 1.102443e-48 | -8.615850e-47 |
| Msa0780490 | Msa1012740 | 0.808544 | 2.940370e-50 | -8.615850e-47 |
| Msa0780490 | Msa1019240 | 0.834011 | 3.834842e-56 | -8.615850e-47 |
| Msa0780490 | Msa1019260 | 0.819116 | 1.375411e-52 | -8.615850e-47 |
| Msa0780490 | Msa1043690 | 0.887860 | 9.838410e-73 | -8.615850e-47 |
| Msa0780490 | Msa1088490 | 0.841298 | 5.171429e-58 | -8.615850e-47 |
| Msa0780490 | Msa1104140 | 0.825258 | 5.170779e-54 | -8.615850e-47 |
| Msa0780490 | Msa1104210 | 0.832951 | 7.052192e-56 | -8.615850e-47 |
| Msa0780490 | Msa1166870 | 0.815829 | 7.563222e-52 | -8.615850e-47 |
| Msa0780490 | Msa1167540 | 0.801860 | 7.377847e-49 | -8.615850e-47 |
| Msa0780490 | Msa1215820 | 0.835356 | 1.759494e-56 | -8.615850e-47 |
| Msa0780490 | Msa1260530 | 0.802723 | 4.899511e-49 | -8.615850e-47 |
| Msa0780490 | Msa1265630 | 0.823407 | 1.408501e-53 | -8.615850e-47 |
| Msa0780490 | Msa1305050 | 0.815047 | 1.128925e-51 | -8.615850e-47 |
| Msa0780490 | Msa1349570 | 0.809558 | 1.783608e-50 | -8.615850e-47 |
| Msa0780490 | Msa1363330 | 0.818042 | 2.408825e-52 | -8.615850e-47 |
| Msa0780490 | Msa1366180 | 0.845302 | 4.419964e-59 | -8.615850e-47 |
| Msa0780490 | Msa1374120 | 0.847581 | 1.056665e-59 | -8.615850e-47 |
| Msa0780490 | Msa1382620 | 0.817724 | 2.842923e-52 | -8.615850e-47 |
| Msa0780490 | Msa1386600 | 0.818173 | 2.250007e-52 | -8.615850e-47 |
| Msa0780490 | Msa1394290 | 0.801751 | 7.766255e-49 | -8.615850e-47 |
| Msa0780490 | Msa1399530 | 0.831284 | 1.820999e-55 | -8.615850e-47 |
| Msa0780490 | Msa1407070 | 0.809165 | 2.165697e-50 | -8.615850e-47 |
| Msa0780490 | Msa1413500 | 0.806880 | 6.635468e-50 | -8.615850e-47 |
| Msa0780490 | Msa1426490 | 0.804059 | 2.590928e-49 | -8.615850e-47 |
| Msa0780490 | Msa1427560 | 0.811852 | 5.689500e-51 | -8.615850e-47 |
| Msa0780490 | Msa1432700 | 0.807094 | 5.978470e-50 | -8.615850e-47 |
| Msa0780490 | Msa1433310 | 0.805437 | 1.335800e-49 | -8.615850e-47 |
| Msa0133540 | Msa0780490 | 0.878609 | 2.446207e-69 | -8.615850e-47 |
| Msa0146340 | Msa0780490 | 0.862406 | 5.185378e-64 | -8.615850e-47 |
| Msa0173530 | Msa0780490 | 0.817777 | 2.765852e-52 | -8.615850e-47 |
| Msa0181490 | Msa0780490 | 0.862838 | 3.817220e-64 | -8.615850e-47 |
| Msa0192230 | Msa0780490 | 0.814954 | 1.183983e-51 | -8.615850e-47 |
| Msa0202020 | Msa0780490 | 0.819894 | 9.138798e-53 | -8.615850e-47 |
| Msa0218830 | Msa0780490 | 0.815044 | 1.131107e-51 | -8.615850e-47 |
| Msa0443390 | Msa0780490 | 0.811204 | 7.870875e-51 | -8.615850e-47 |
| Msa0264010 | Msa0780490 | 0.844535 | 7.118451e-59 | -8.615850e-47 |
| Msa0289580 | Msa0780490 | 0.854384 | 1.275838e-61 | -8.615850e-47 |
| Msa0289610 | Msa0780490 | 0.863154 | 3.048655e-64 | -8.615850e-47 |
| Msa0298140 | Msa0780490 | 0.845685 | 3.480837e-59 | -8.615850e-47 |
| Msa0306690 | Msa0780490 | 0.859966 | 2.868468e-63 | -8.615850e-47 |
| Msa0313100 | Msa0780490 | 0.825093 | 5.656592e-54 | -8.615850e-47 |
| Msa0321640 | Msa0780490 | 0.811163 | 8.032378e-51 | -8.615850e-47 |
| Msa0327300 | Msa0780490 | 0.851674 | 7.610750e-61 | -8.615850e-47 |
| Msa0327330 | Msa0780490 | 0.836340 | 9.911305e-57 | -8.615850e-47 |
| Msa0336010 | Msa0780490 | 0.809796 | 1.585399e-50 | -8.615850e-47 |
| Msa0348830 | Msa0780490 | 0.822311 | 2.535554e-53 | -8.615850e-47 |
| Msa0483110 | Msa0780490 | 0.830010 | 3.736093e-55 | -8.615850e-47 |
| Msa0526540 | Msa0780490 | 0.818627 | 1.776086e-52 | -8.615850e-47 |
| Msa0576940 | Msa0780490 | 0.827200 | 1.784009e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780490 | MtrunA17_Chr5g0399471 | 100.000 | 216 | 0 | 0 | 45 | 260 | 1 | 216 | 9.16e-160 | 442 |
| Msa0780490 | MtrunA17_Chr2g0321491 | 99.074 | 216 | 2 | 0 | 45 | 260 | 1 | 216 | 2.35e-158 | 438 |
| Msa0780490 | MtrunA17_Chr3g0113691 | 97.685 | 216 | 5 | 0 | 45 | 260 | 1 | 216 | 1.75e-156 | 433 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780490 | AT1G08360.1 | 89.815 | 216 | 22 | 0 | 45 | 260 | 1 | 216 | 3.54e-130 | 367 |
| Msa0780490 | AT2G27530.2 | 89.352 | 216 | 23 | 0 | 45 | 260 | 1 | 216 | 2.55e-129 | 365 |
| Msa0780490 | AT2G27530.1 | 89.352 | 216 | 23 | 0 | 45 | 260 | 1 | 216 | 2.55e-129 | 365 |
| Msa0780490 | AT5G22440.1 | 89.401 | 217 | 22 | 1 | 45 | 260 | 1 | 217 | 7.13e-127 | 359 |
| Msa0780490 | AT5G22440.2 | 89.401 | 217 | 22 | 1 | 45 | 260 | 1 | 217 | 7.13e-127 | 359 |
Find 57 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACACTCAGTTGTACATTT+TGG | 0.198216 | 5_2:-62230393 | None:intergenic |
| CAAACAGATTCCTCGTCTTT+TGG | 0.210825 | 5_2:+62229964 | Msa0780490:CDS |
| TTGGATAATTATAGCCTTAT+AGG | 0.228909 | 5_2:+62231070 | Msa0780490:three_prime_UTR |
| TGGATAATTATAGCCTTATA+GGG | 0.275985 | 5_2:+62231071 | Msa0780490:three_prime_UTR |
| TAAGAAACTGGTGAAGAAAT+TGG | 0.278623 | 5_2:+62229901 | Msa0780490:CDS |
| CCTTAGCCTCAAGAGATTCT+TGG | 0.279927 | 5_2:-62230273 | None:intergenic |
| AACAGCTTCAGAGGCTAAAA+AGG | 0.290643 | 5_2:-62229939 | None:intergenic |
| CAATAGTCTCCACAAATTTA+CGG | 0.320435 | 5_2:-62228972 | None:intergenic |
| AAACACAAAGGATTGAAATT+AGG | 0.320596 | 5_2:-62231096 | None:intergenic |
| GTTCTTGAATGTTGTTTCAT+TGG | 0.357804 | 5_2:+62231038 | Msa0780490:three_prime_UTR |
| TTCAAAACTCGATTTGTTAC+CGG | 0.372476 | 5_2:-62227702 | None:intergenic |
| TTTGGAATCACCCATGATTC+CGG | 0.376846 | 5_2:-62228941 | None:intergenic |
| AGCTGTTGGCAATGTTAGTA+TGG | 0.409393 | 5_2:+62230354 | Msa0780490:CDS |
| TTGAAATTAGGACCCCTATA+AGG | 0.433249 | 5_2:-62231084 | None:intergenic |
| AGAAGCTATTACCGGAATCA+TGG | 0.439289 | 5_2:+62228930 | Msa0780490:CDS |
| AAGATGAAAATTTGCATGCT+TGG | 0.446340 | 5_2:+62229081 | Msa0780490:CDS |
| ATATTGTAGGCTGAGAAAAT+AGG | 0.447267 | 5_2:+62229833 | Msa0780490:intron |
| TGCACAACACTTTCTTGAGC+TGG | 0.451787 | 5_2:-62230324 | None:intergenic |
| TATTACCTCCTCAACATGTT+GGG | 0.453017 | 5_2:-62229109 | None:intergenic |
| TGCGAAGTGTGCTAGTACGA+TGG | 0.453998 | 5_2:-62228671 | None:intergenic |
| GGATAAACGTTTCAGCGGTT+CGG | 0.456511 | 5_2:+62229032 | Msa0780490:CDS |
| GAGACTATTGAACTCCAGAT+TGG | 0.461376 | 5_2:+62228985 | Msa0780490:CDS |
| CCAAGAATCTCTTGAGGCTA+AGG | 0.480487 | 5_2:+62230273 | Msa0780490:CDS |
| GCTGTGAGAGAAGCTATTAC+CGG | 0.513912 | 5_2:+62228922 | Msa0780490:CDS |
| CTGTTTGATAACAGCTTCAG+AGG | 0.515911 | 5_2:-62229948 | None:intergenic |
| AATATGGTCAAAGATTGTTC+CGG | 0.520217 | 5_2:+62227683 | None:intergenic |
| GAAAATAGGATTGGAATCGA+TGG | 0.526298 | 5_2:+62229847 | Msa0780490:CDS |
| CTTGTATCTGAAGAGCTCCA+TGG | 0.531354 | 5_2:+62230868 | Msa0780490:CDS |
| TTATTACCTCCTCAACATGT+TGG | 0.532530 | 5_2:-62229110 | None:intergenic |
| ATCTTTGGTCTCGGAATGTG+AGG | 0.537988 | 5_2:-62229063 | None:intergenic |
| TTGTATCTGAAGAGCTCCAT+GGG | 0.538115 | 5_2:+62230869 | Msa0780490:CDS |
| GGCTAAGGTTAACGAGACTA+AGG | 0.542276 | 5_2:+62230288 | Msa0780490:CDS |
| GTAGGCTGAGAAAATAGGAT+TGG | 0.543381 | 5_2:+62229838 | Msa0780490:intron |
| GAAGCTATTACCGGAATCAT+GGG | 0.561503 | 5_2:+62228931 | Msa0780490:CDS |
| GCGAAGTGTGCTAGTACGAT+GGG | 0.562523 | 5_2:-62228670 | None:intergenic |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 5_2:+62229986 | Msa0780490:CDS |
| TAGCCTCAAGAGATTCTTGG+TGG | 0.564785 | 5_2:-62230270 | None:intergenic |
| GTTTCATTGGTTACAAACGT+TGG | 0.565044 | 5_2:+62231051 | Msa0780490:three_prime_UTR |
| CTCAAGAAAGTGTTGTGCAT+GGG | 0.565229 | 5_2:+62230328 | Msa0780490:CDS |
| GGTTAACGAGACTAAGGCTA+TGG | 0.565310 | 5_2:+62230294 | Msa0780490:CDS |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 5_2:+62229982 | Msa0780490:CDS |
| CATCTTCGATAGAGAAGAAG+AGG | 0.578506 | 5_2:-62228694 | None:intergenic |
| CTTCTTCTCTATCGAAGATG+AGG | 0.586051 | 5_2:+62228697 | Msa0780490:CDS |
| GCTCAAGAAAGTGTTGTGCA+TGG | 0.598477 | 5_2:+62230327 | Msa0780490:CDS |
| TCTTGGTGGGAAACAAGTGT+AGG | 0.599437 | 5_2:-62230256 | None:intergenic |
| CTTGGTGGGAAACAAGTGTA+GGG | 0.600430 | 5_2:-62230255 | None:intergenic |
| AATCAAGCCTTTAAAAGACT+CGG | 0.601118 | 5_2:-62230901 | None:intergenic |
| TGGTGATGCCCAACATGTTG+AGG | 0.623552 | 5_2:+62229101 | Msa0780490:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 5_2:-62229989 | None:intergenic |
| GGATAATTATAGCCTTATAG+GGG | 0.633700 | 5_2:+62231072 | Msa0780490:three_prime_UTR |
| AGCCTCAAGAGATTCTTGGT+GGG | 0.641849 | 5_2:-62230269 | None:intergenic |
| CAAAAGGATAAACGTTTCAG+CGG | 0.645836 | 5_2:+62229027 | Msa0780490:CDS |
| TTCCCACCAAGAATCTCTTG+AGG | 0.654036 | 5_2:+62230267 | Msa0780490:CDS |
| CTAAAAGATGTAAAACACAA+AGG | 0.678049 | 5_2:-62231108 | None:intergenic |
| TTGTGCATGGGAGTAGCTGT+TGG | 0.683745 | 5_2:+62230340 | Msa0780490:CDS |
| AGACCAGGACCCAAAAGACG+AGG | 0.696429 | 5_2:-62229974 | None:intergenic |
| TGATGCCCAACATGTTGAGG+AGG | 0.714764 | 5_2:+62229104 | Msa0780490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAAAAATAAAACT+TGG | - | chr5_2:62228103-62228122 | None:intergenic | 10.0% |
| !!! | TATTTTTATTTTTCGAATCT+TGG | + | chr5_2:62227840-62227859 | Msa0780490:intron | 15.0% |
| !! | ATATAGAAAATTCATTTGAA+AGG | - | chr5_2:62228363-62228382 | None:intergenic | 15.0% |
| !!! | CATTTTTATCAAATCATTAT+CGG | - | chr5_2:62229197-62229216 | None:intergenic | 15.0% |
| !! | AAATATAGCACAAAAATAAA+TGG | - | chr5_2:62229359-62229378 | None:intergenic | 15.0% |
| !!! | TTTATTTTTGTGCTATATTT+TGG | + | chr5_2:62229359-62229378 | Msa0780490:intron | 15.0% |
| !!! | TATTTTGTTATTGTAATATC+TGG | + | chr5_2:62230955-62230974 | Msa0780490:three_prime_UTR | 15.0% |
| !!! | ATTTTGTTATTGTAATATCT+GGG | + | chr5_2:62230956-62230975 | Msa0780490:three_prime_UTR | 15.0% |
| !! | CTTAAATAATTGAAATCAAG+TGG | - | chr5_2:62227765-62227784 | None:intergenic | 20.0% |
| !! | TAAGTAAAATCAAATAACGT+TGG | + | chr5_2:62227781-62227800 | Msa0780490:intron | 20.0% |
| !!! | TTTTAAGAGAAAATATTTCG+CGG | - | chr5_2:62228070-62228089 | None:intergenic | 20.0% |
| !!! | TAGATCTTTTAACAAAAACT+TGG | - | chr5_2:62228179-62228198 | None:intergenic | 20.0% |
| !!! | CTATAAAACAACGTTTTATT+AGG | - | chr5_2:62228504-62228523 | None:intergenic | 20.0% |
| !!! | CTAATAAAACGTTGTTTTAT+AGG | + | chr5_2:62228502-62228521 | Msa0780490:intron | 20.0% |
| !! | ATGAAATGAAATAAACGTTA+TGG | + | chr5_2:62228565-62228584 | Msa0780490:intron | 20.0% |
| !! | TGAAATGAAATAAACGTTAT+GGG | + | chr5_2:62228566-62228585 | Msa0780490:intron | 20.0% |
| !!! | TAACTGAGATTTGATTTATA+TGG | + | chr5_2:62228835-62228854 | Msa0780490:intron | 20.0% |
| !! | TACTAACATAAAACATAAAC+AGG | - | chr5_2:62230075-62230094 | None:intergenic | 20.0% |
| !!! | TTTAAATTACCAACTGTTTT+TGG | + | chr5_2:62230117-62230136 | Msa0780490:intron | 20.0% |
| !! | AATAGATTACATTAATTCGA+TGG | - | chr5_2:62230829-62230848 | None:intergenic | 20.0% |
| !! | AGATACATGGATCTTTTAAA+AGG | - | chr5_2:62227867-62227886 | None:intergenic | 25.0% |
| !!! | ATTACTCCTACTAGTTTTAA+CGG | - | chr5_2:62227920-62227939 | None:intergenic | 25.0% |
| ! | ATGAAATTCTAATAAAGGTC+GGG | - | chr5_2:62227971-62227990 | None:intergenic | 25.0% |
| ! | CATGAAATTCTAATAAAGGT+CGG | - | chr5_2:62227972-62227991 | None:intergenic | 25.0% |
| ! | GAAAAATAAAACTTGGTTGT+GGG | - | chr5_2:62228096-62228115 | None:intergenic | 25.0% |
| ! | AGAAAAATAAAACTTGGTTG+TGG | - | chr5_2:62228097-62228116 | None:intergenic | 25.0% |
| ! | AAAGCAAAAATCGTTTCATT+TGG | - | chr5_2:62228442-62228461 | None:intergenic | 25.0% |
| !!! | TAAAACGTTGTTTTATAGGT+AGG | + | chr5_2:62228506-62228525 | Msa0780490:intron | 25.0% |
| ! | GCTTAAAGAAGCTTAAAAAA+AGG | - | chr5_2:62228769-62228788 | None:intergenic | 25.0% |
| !! | AAATTTACGGTTTTTCTCTT+TGG | - | chr5_2:62228962-62228981 | None:intergenic | 25.0% |
| !!! | CATAATTTTTCAAACCAATC+TGG | - | chr5_2:62229002-62229021 | None:intergenic | 25.0% |
| ! | GAAAAATTATGATCCTCAAA+AGG | + | chr5_2:62229011-62229030 | Msa0780490:CDS | 25.0% |
| ! | AATGCCTTATATCAAAATGT+CGG | + | chr5_2:62229274-62229293 | Msa0780490:intron | 25.0% |
| !! | ATAAATTTTGTGACACTGTT+TGG | - | chr5_2:62229631-62229650 | None:intergenic | 25.0% |
| ! | ATTAGTATGTTGTTGAATTG+TGG | - | chr5_2:62229701-62229720 | None:intergenic | 25.0% |
| !!! | TGTCTTTCATTTAGTTTTGA+TGG | + | chr5_2:62229720-62229739 | Msa0780490:intron | 25.0% |
| ! | GCTAAACAAAAATAAGAAAC+TGG | + | chr5_2:62229889-62229908 | Msa0780490:CDS | 25.0% |
| ! | AAACATAAACAGGATATATG+TGG | - | chr5_2:62230065-62230084 | None:intergenic | 25.0% |
| ! | TGCTAAATAAAATGAAGCAA+CGG | - | chr5_2:62230155-62230174 | None:intergenic | 25.0% |
| ! | GATGTTATAGACATATACTT+GGG | - | chr5_2:62230627-62230646 | None:intergenic | 25.0% |
| ! | TGATGTTATAGACATATACT+TGG | - | chr5_2:62230628-62230647 | None:intergenic | 25.0% |
| ! | TATGGTGAAAATTGAAAACA+AGG | - | chr5_2:62230734-62230753 | None:intergenic | 25.0% |
| !! | TTTTCACCATATATGTTCTT+CGG | + | chr5_2:62230743-62230762 | Msa0780490:intron | 25.0% |
| !!! | CTGCTTTAGAATAAATAATC+TGG | + | chr5_2:62230800-62230819 | Msa0780490:intron | 25.0% |
| ! | GAATTAATGTAATCTATTGC+TGG | + | chr5_2:62230831-62230850 | Msa0780490:intron | 25.0% |
| !! | ATTTTGAATACAGCGAATTT+TGG | + | chr5_2:62230921-62230940 | Msa0780490:three_prime_UTR | 25.0% |
| !! | TCATCTTTCTACAATTTTGT+TGG | + | chr5_2:62230992-62231011 | Msa0780490:three_prime_UTR | 25.0% |
| !!! | TTGGATAATTATAGCCTTAT+AGG | + | chr5_2:62231070-62231089 | Msa0780490:three_prime_UTR | 25.0% |
| !!! | TGGATAATTATAGCCTTATA+GGG | + | chr5_2:62231071-62231090 | Msa0780490:three_prime_UTR | 25.0% |
| ! | AAACACAAAGGATTGAAATT+AGG | - | chr5_2:62231099-62231118 | None:intergenic | 25.0% |
| ! | CTAAAAGATGTAAAACACAA+AGG | - | chr5_2:62231111-62231130 | None:intergenic | 25.0% |
| !! | TTCAAAACTCGATTTGTTAC+CGG | - | chr5_2:62227705-62227724 | None:intergenic | 30.0% |
| TGATCACTATTAGAGATACA+TGG | - | chr5_2:62227880-62227899 | None:intergenic | 30.0% | |
| GCGTCATGAAATTCTAATAA+AGG | - | chr5_2:62227976-62227995 | None:intergenic | 30.0% | |
| GAGAAATCATGTCTATAACT+TGG | - | chr5_2:62228206-62228225 | None:intergenic | 30.0% | |
| TGAGATTATTCACTGTTACA+GGG | - | chr5_2:62228298-62228317 | None:intergenic | 30.0% | |
| !!! | CGTTTCATTTGGTTTTTTGT+GGG | - | chr5_2:62228431-62228450 | None:intergenic | 30.0% |
| !!! | TCGTTTCATTTGGTTTTTTG+TGG | - | chr5_2:62228432-62228451 | None:intergenic | 30.0% |
| GTATATTTGAGCAAATAGAG+TGG | + | chr5_2:62228528-62228547 | Msa0780490:intron | 30.0% | |
| AGAGAAAAACCGTAAATTTG+TGG | + | chr5_2:62228963-62228982 | Msa0780490:CDS | 30.0% | |
| CAATAGTCTCCACAAATTTA+CGG | - | chr5_2:62228975-62228994 | None:intergenic | 30.0% | |
| ! | CAAATTTTCATCTTTGGTCT+CGG | - | chr5_2:62229075-62229094 | None:intergenic | 30.0% |
| ! | AGCATGCAAATTTTCATCTT+TGG | - | chr5_2:62229081-62229100 | None:intergenic | 30.0% |
| AAGATGAAAATTTGCATGCT+TGG | + | chr5_2:62229081-62229100 | Msa0780490:CDS | 30.0% | |
| TGTTGAATTGTGGTTACTAA+GGG | - | chr5_2:62229691-62229710 | None:intergenic | 30.0% | |
| TTGTTGAATTGTGGTTACTA+AGG | - | chr5_2:62229692-62229711 | None:intergenic | 30.0% | |
| CACTCTAATATGCATATTGT+AGG | + | chr5_2:62229820-62229839 | Msa0780490:intron | 30.0% | |
| ATATTGTAGGCTGAGAAAAT+AGG | + | chr5_2:62229833-62229852 | Msa0780490:intron | 30.0% | |
| TAAGAAACTGGTGAAGAAAT+TGG | + | chr5_2:62229901-62229920 | Msa0780490:CDS | 30.0% | |
| !! | CTTCATTTTATTTAGCAACC+AGG | + | chr5_2:62230158-62230177 | Msa0780490:intron | 30.0% |
| ! | TAACACTCAGTTGTACATTT+TGG | - | chr5_2:62230396-62230415 | None:intergenic | 30.0% |
| ! | ATTTTACTCGATGTTATGAG+TGG | - | chr5_2:62230466-62230485 | None:intergenic | 30.0% |
| ! | CTTTGTTACCTTCTATTTTG+TGG | + | chr5_2:62230491-62230510 | Msa0780490:intron | 30.0% |
| ATTGGATGATGAGCAATAAT+AGG | + | chr5_2:62230526-62230545 | Msa0780490:intron | 30.0% | |
| TTATAGACATATACTTGGGA+TGG | - | chr5_2:62230623-62230642 | None:intergenic | 30.0% | |
| ! | AATCTTACCGAGTCTTTTAA+AGG | + | chr5_2:62230894-62230913 | Msa0780490:CDS | 30.0% |
| ! | AATCAAGCCTTTAAAAGACT+CGG | - | chr5_2:62230904-62230923 | None:intergenic | 30.0% |
| !! | GTTCTTGAATGTTGTTTCAT+TGG | + | chr5_2:62231038-62231057 | Msa0780490:three_prime_UTR | 30.0% |
| !! | GGATAATTATAGCCTTATAG+GGG | + | chr5_2:62231072-62231091 | Msa0780490:three_prime_UTR | 30.0% |
| AAGTCTCCGTTAAAACTAGT+AGG | + | chr5_2:62227911-62227930 | Msa0780490:intron | 35.0% | |
| GAGATTATTCACTGTTACAG+GGG | - | chr5_2:62228297-62228316 | None:intergenic | 35.0% | |
| CTGAGATTATTCACTGTTAC+AGG | - | chr5_2:62228299-62228318 | None:intergenic | 35.0% | |
| TAGCCCTATTGAACACATAA+GGG | + | chr5_2:62228324-62228343 | Msa0780490:intron | 35.0% | |
| TATTCATGACTGAGTTCTTG+TGG | - | chr5_2:62228481-62228500 | None:intergenic | 35.0% | |
| ! | GACAGACTAACATGAGTTTT+GGG | - | chr5_2:62228609-62228628 | None:intergenic | 35.0% |
| ! | AGACAGACTAACATGAGTTT+TGG | - | chr5_2:62228610-62228629 | None:intergenic | 35.0% |
| GACAAGTAGAATAAGAGAGA+GGG | - | chr5_2:62228735-62228754 | None:intergenic | 35.0% | |
| AGACAAGTAGAATAAGAGAG+AGG | - | chr5_2:62228736-62228755 | None:intergenic | 35.0% | |
| ! | CTGAAACGTTTATCCTTTTG+AGG | - | chr5_2:62229027-62229046 | None:intergenic | 35.0% |
| CAAAAGGATAAACGTTTCAG+CGG | + | chr5_2:62229027-62229046 | Msa0780490:CDS | 35.0% | |
| TATTACCTCCTCAACATGTT+GGG | - | chr5_2:62229112-62229131 | None:intergenic | 35.0% | |
| TTATTACCTCCTCAACATGT+TGG | - | chr5_2:62229113-62229132 | None:intergenic | 35.0% | |
| !!! | AGCACCGACATTTTGATATA+AGG | - | chr5_2:62229281-62229300 | None:intergenic | 35.0% |
| CAATTCAGCAATAACTACCT+CGG | - | chr5_2:62229305-62229324 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr5_2:62229537-62229556 | Msa0780490:intron | 35.0% |
| !!! | GATGGTATTGATTTTGCATC+CGG | + | chr5_2:62229738-62229757 | Msa0780490:intron | 35.0% |
| CAAAAAAATATCCCATGCTC+CGG | - | chr5_2:62229760-62229779 | None:intergenic | 35.0% | |
| GAAAATAGGATTGGAATCGA+TGG | + | chr5_2:62229847-62229866 | Msa0780490:CDS | 35.0% | |
| ! | AAACAGATTCCTCGTCTTTT+GGG | + | chr5_2:62229965-62229984 | Msa0780490:CDS | 35.0% |
| GAGTATGAACCAAAAACAGT+TGG | - | chr5_2:62230129-62230148 | None:intergenic | 35.0% | |
| GGCAAACTTTCAAATAAACC+TGG | - | chr5_2:62230179-62230198 | None:intergenic | 35.0% | |
| AGCTCAAGCAACAATTGAAA+TGG | - | chr5_2:62230200-62230219 | None:intergenic | 35.0% | |
| ! | AATTGTTGCTTGAGCTGATT+TGG | + | chr5_2:62230204-62230223 | Msa0780490:intron | 35.0% |
| !!! | GCTGATTTGGATATTTTGCA+TGG | + | chr5_2:62230217-62230236 | Msa0780490:intron | 35.0% |
| ! | GATATTTTGCATGGCTTTTC+AGG | + | chr5_2:62230226-62230245 | Msa0780490:intron | 35.0% |
| TGTCCTTGTTGAAAAAGAAC+TGG | + | chr5_2:62230425-62230444 | Msa0780490:CDS | 35.0% | |
| !!! | TTGCCAGTTCTTTTTCAACA+AGG | - | chr5_2:62230431-62230450 | None:intergenic | 35.0% |
| CATCATCACCACAAAATAGA+AGG | - | chr5_2:62230502-62230521 | None:intergenic | 35.0% | |
| ! | TTGTGGTGATGATGAATCAT+TGG | + | chr5_2:62230508-62230527 | Msa0780490:intron | 35.0% |
| AAGTAATAGTCCGACATTAG+AGG | + | chr5_2:62230582-62230601 | Msa0780490:intron | 35.0% | |
| !! | TGTAATCTATTGCTGGTTTC+AGG | + | chr5_2:62230838-62230857 | Msa0780490:intron | 35.0% |
| ! | GTTTCATTGGTTACAAACGT+TGG | + | chr5_2:62231051-62231070 | Msa0780490:three_prime_UTR | 35.0% |
| TTGAAATTAGGACCCCTATA+AGG | - | chr5_2:62231087-62231106 | None:intergenic | 35.0% | |
| AAGGTCGGGTCAAATGTTTA+GGG | - | chr5_2:62227957-62227976 | None:intergenic | 40.0% | |
| AAAGGTCGGGTCAAATGTTT+AGG | - | chr5_2:62227958-62227977 | None:intergenic | 40.0% | |
| ! | GAAACTCTGTGTCGATAACA+TGG | - | chr5_2:62228270-62228289 | None:intergenic | 40.0% |
| CTAGCCCTATTGAACACATA+AGG | + | chr5_2:62228323-62228342 | Msa0780490:intron | 40.0% | |
| TCGCCCTTATGTGTTCAATA+GGG | - | chr5_2:62228330-62228349 | None:intergenic | 40.0% | |
| TTCGCCCTTATGTGTTCAAT+AGG | - | chr5_2:62228331-62228350 | None:intergenic | 40.0% | |
| TCTGTCTGTCTGTCTTTCTA+GGG | + | chr5_2:62228623-62228642 | Msa0780490:intron | 40.0% | |
| CATCTTCGATAGAGAAGAAG+AGG | - | chr5_2:62228697-62228716 | None:intergenic | 40.0% | |
| CTTCTTCTCTATCGAAGATG+AGG | + | chr5_2:62228697-62228716 | Msa0780490:CDS | 40.0% | |
| AGAAGCTATTACCGGAATCA+TGG | + | chr5_2:62228930-62228949 | Msa0780490:CDS | 40.0% | |
| GAAGCTATTACCGGAATCAT+GGG | + | chr5_2:62228931-62228950 | Msa0780490:CDS | 40.0% | |
| ! | TTTGGAATCACCCATGATTC+CGG | - | chr5_2:62228944-62228963 | None:intergenic | 40.0% |
| GAGACTATTGAACTCCAGAT+TGG | + | chr5_2:62228985-62229004 | Msa0780490:CDS | 40.0% | |
| GTTGCACTCAAACTGTTTGT+TGG | + | chr5_2:62229139-62229158 | Msa0780490:intron | 40.0% | |
| ACAAACACGAAACACTGACA+CGG | + | chr5_2:62229166-62229185 | Msa0780490:intron | 40.0% | |
| CACTCTATCAAACACGTGTT+CGG | - | chr5_2:62229251-62229270 | None:intergenic | 40.0% | |
| TGTGTCATCTGACTCATATC+AGG | - | chr5_2:62229410-62229429 | None:intergenic | 40.0% | |
| GATACTGTTGTATGCGACTT+AGG | + | chr5_2:62229432-62229451 | Msa0780490:intron | 40.0% | |
| GCTTATCTGAGCTTATCTAC+TGG | - | chr5_2:62229655-62229674 | None:intergenic | 40.0% | |
| GTAGGCTGAGAAAATAGGAT+TGG | + | chr5_2:62229838-62229857 | Msa0780490:intron | 40.0% | |
| AACAGCTTCAGAGGCTAAAA+AGG | - | chr5_2:62229942-62229961 | None:intergenic | 40.0% | |
| ! | CTGTTTGATAACAGCTTCAG+AGG | - | chr5_2:62229951-62229970 | None:intergenic | 40.0% |
| ! | CAAACAGATTCCTCGTCTTT+TGG | + | chr5_2:62229964-62229983 | Msa0780490:CDS | 40.0% |
| ! | GCAGGCATGTGTTTTCTTTT+GGG | + | chr5_2:62230004-62230023 | Msa0780490:intron | 40.0% |
| ! | GTGTTTTCTTTTGGGCGTTT+TGG | + | chr5_2:62230012-62230031 | Msa0780490:intron | 40.0% |
| !! | CTCAAGAAAGTGTTGTGCAT+GGG | + | chr5_2:62230328-62230347 | Msa0780490:CDS | 40.0% |
| AGCTGTTGGCAATGTTAGTA+TGG | + | chr5_2:62230354-62230373 | Msa0780490:CDS | 40.0% | |
| !!! | TCTTTTTCAACAAGGACACG+AGG | - | chr5_2:62230423-62230442 | None:intergenic | 40.0% |
| GAAATCCAGTCCTCTAATGT+CGG | - | chr5_2:62230595-62230614 | None:intergenic | 40.0% | |
| TCACCATATATGTTCTTCGG+TGG | + | chr5_2:62230746-62230765 | Msa0780490:intron | 40.0% | |
| !! | TCTATTGCTGGTTTCAGGTT+AGG | + | chr5_2:62230843-62230862 | Msa0780490:intron | 40.0% |
| TTGTATCTGAAGAGCTCCAT+GGG | + | chr5_2:62230869-62230888 | Msa0780490:CDS | 40.0% | |
| AGGTCGGGTCAAATGTTTAG+GGG | - | chr5_2:62227956-62227975 | None:intergenic | 45.0% | |
| !! | CTGAGTTCTTGTGGCTTTGA+GGG | - | chr5_2:62228472-62228491 | None:intergenic | 45.0% |
| ! | ACTGAGTTCTTGTGGCTTTG+AGG | - | chr5_2:62228473-62228492 | None:intergenic | 45.0% |
| GTCTGTCTGTCTGTCTTTCT+AGG | + | chr5_2:62228622-62228641 | Msa0780490:intron | 45.0% | |
| GCTGTGAGAGAAGCTATTAC+CGG | + | chr5_2:62228922-62228941 | Msa0780490:CDS | 45.0% | |
| GGATAAACGTTTCAGCGGTT+CGG | + | chr5_2:62229032-62229051 | Msa0780490:CDS | 45.0% | |
| ATCTTTGGTCTCGGAATGTG+AGG | - | chr5_2:62229066-62229085 | None:intergenic | 45.0% | |
| CGAACACGTGTTTGATAGAG+TGG | + | chr5_2:62229249-62229268 | Msa0780490:intron | 45.0% | |
| ! | TTGATTTTGCATCCGGAGCA+TGG | + | chr5_2:62229745-62229764 | Msa0780490:intron | 45.0% |
| ! | TGATTTTGCATCCGGAGCAT+GGG | + | chr5_2:62229746-62229765 | Msa0780490:intron | 45.0% |
| CTTCAGAGGCTAAAAAGGCA+TGG | - | chr5_2:62229937-62229956 | None:intergenic | 45.0% | |
| ! | GGCAGGCATGTGTTTTCTTT+TGG | + | chr5_2:62230003-62230022 | Msa0780490:intron | 45.0% |
| CTTGGTGGGAAACAAGTGTA+GGG | - | chr5_2:62230258-62230277 | None:intergenic | 45.0% | |
| TCTTGGTGGGAAACAAGTGT+AGG | - | chr5_2:62230259-62230278 | None:intergenic | 45.0% | |
| TTCCCACCAAGAATCTCTTG+AGG | + | chr5_2:62230267-62230286 | Msa0780490:CDS | 45.0% | |
| AGCCTCAAGAGATTCTTGGT+GGG | - | chr5_2:62230272-62230291 | None:intergenic | 45.0% | |
| TAGCCTCAAGAGATTCTTGG+TGG | - | chr5_2:62230273-62230292 | None:intergenic | 45.0% | |
| CCTTAGCCTCAAGAGATTCT+TGG | - | chr5_2:62230276-62230295 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGCTA+AGG | + | chr5_2:62230273-62230292 | Msa0780490:CDS | 45.0% | |
| GGCTAAGGTTAACGAGACTA+AGG | + | chr5_2:62230288-62230307 | Msa0780490:CDS | 45.0% | |
| GGTTAACGAGACTAAGGCTA+TGG | + | chr5_2:62230294-62230313 | Msa0780490:CDS | 45.0% | |
| TGCACAACACTTTCTTGAGC+TGG | - | chr5_2:62230327-62230346 | None:intergenic | 45.0% | |
| !! | GCTCAAGAAAGTGTTGTGCA+TGG | + | chr5_2:62230327-62230346 | Msa0780490:CDS | 45.0% |
| ATAGTCCGACATTAGAGGAC+TGG | + | chr5_2:62230587-62230606 | Msa0780490:intron | 45.0% | |
| GACATCTTCACAAGGTTGTG+AGG | - | chr5_2:62230705-62230724 | None:intergenic | 45.0% | |
| GCACCACCGAAGAACATATA+TGG | - | chr5_2:62230752-62230771 | None:intergenic | 45.0% | |
| CTTGTATCTGAAGAGCTCCA+TGG | + | chr5_2:62230868-62230887 | Msa0780490:CDS | 45.0% | |
| !! | GACTCGGTAAGATTTTCCCA+TGG | - | chr5_2:62230888-62230907 | None:intergenic | 45.0% |
| GGTCGGGTCAAATGTTTAGG+GGG | - | chr5_2:62227955-62227974 | None:intergenic | 50.0% | |
| GCGAAGTGTGCTAGTACGAT+GGG | - | chr5_2:62228673-62228692 | None:intergenic | 50.0% | |
| TGCGAAGTGTGCTAGTACGA+TGG | - | chr5_2:62228674-62228693 | None:intergenic | 50.0% | |
| ! | TGGTGATGCCCAACATGTTG+AGG | + | chr5_2:62229101-62229120 | Msa0780490:CDS | 50.0% |
| TGATGCCCAACATGTTGAGG+AGG | + | chr5_2:62229104-62229123 | Msa0780490:CDS | 50.0% | |
| !! | TCAAAATGTCGGTGCTACCG+AGG | + | chr5_2:62229285-62229304 | Msa0780490:intron | 50.0% |
| !! | ATTCCTCGTCTTTTGGGTCC+TGG | + | chr5_2:62229971-62229990 | Msa0780490:CDS | 50.0% |
| TTTGGGTCCTGGTCTCAACA+AGG | + | chr5_2:62229982-62230001 | Msa0780490:CDS | 50.0% | |
| TTGTGCATGGGAGTAGCTGT+TGG | + | chr5_2:62230340-62230359 | Msa0780490:CDS | 50.0% | |
| GGTACTGCGACATCTTCACA+AGG | - | chr5_2:62230713-62230732 | None:intergenic | 50.0% | |
| AGACCAGGACCCAAAAGACG+AGG | - | chr5_2:62229977-62229996 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | - | chr5_2:62229992-62230011 | None:intergenic | 55.0% |
| GGTCCTGGTCTCAACAAGGC+AGG | + | chr5_2:62229986-62230005 | Msa0780490:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 62227686 | 62231187 | 62227686 | ID=Msa0780490;Name=Msa0780490 |
| chr5_2 | mRNA | 62227686 | 62231187 | 62227686 | ID=Msa0780490-mRNA-1;Parent=Msa0780490;Name=Msa0780490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.66|0.83|1|1|6|274|260 |
| chr5_2 | exon | 62227686 | 62227747 | 62227686 | ID=Msa0780490-mRNA-1:exon:18416;Parent=Msa0780490-mRNA-1 |
| chr5_2 | exon | 62228644 | 62228718 | 62228644 | ID=Msa0780490-mRNA-1:exon:18417;Parent=Msa0780490-mRNA-1 |
| chr5_2 | exon | 62228906 | 62229125 | 62228906 | ID=Msa0780490-mRNA-1:exon:18418;Parent=Msa0780490-mRNA-1 |
| chr5_2 | exon | 62229842 | 62230007 | 62229842 | ID=Msa0780490-mRNA-1:exon:18419;Parent=Msa0780490-mRNA-1 |
| chr5_2 | exon | 62230248 | 62230453 | 62230248 | ID=Msa0780490-mRNA-1:exon:18420;Parent=Msa0780490-mRNA-1 |
| chr5_2 | exon | 62230860 | 62231187 | 62230860 | ID=Msa0780490-mRNA-1:exon:18421;Parent=Msa0780490-mRNA-1 |
| chr5_2 | CDS | 62227686 | 62227747 | 62227686 | ID=Msa0780490-mRNA-1:cds;Parent=Msa0780490-mRNA-1 |
| chr5_2 | CDS | 62228644 | 62228718 | 62228644 | ID=Msa0780490-mRNA-1:cds;Parent=Msa0780490-mRNA-1 |
| chr5_2 | CDS | 62228906 | 62229125 | 62228906 | ID=Msa0780490-mRNA-1:cds;Parent=Msa0780490-mRNA-1 |
| chr5_2 | CDS | 62229842 | 62230007 | 62229842 | ID=Msa0780490-mRNA-1:cds;Parent=Msa0780490-mRNA-1 |
| chr5_2 | CDS | 62230248 | 62230453 | 62230248 | ID=Msa0780490-mRNA-1:cds;Parent=Msa0780490-mRNA-1 |
| chr5_2 | CDS | 62230860 | 62230913 | 62230860 | ID=Msa0780490-mRNA-1:cds;Parent=Msa0780490-mRNA-1 |
| chr5_2 | three_prime_UTR | 62230914 | 62231187 | 62230914 | ID=Msa0780490-mRNA-1:three_prime_utr;Parent=Msa0780490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
