Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300090 | XP_013465141.1 | 97.857 | 140 | 3 | 0 | 1 | 140 | 1 | 140 | 1.08e-95 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300090 | sp|O49453|Y4844_ARATH | 68.889 | 135 | 40 | 1 | 5 | 137 | 15 | 149 | 1.38e-61 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064350 | Msa0300090 | 0.802203 | 6.270360e-49 | -8.615850e-47 |
| Msa0204980 | Msa0300090 | 0.803305 | 3.714690e-49 | -8.615850e-47 |
| Msa0300090 | Msa0369450 | 0.800583 | 1.346595e-48 | -8.615850e-47 |
| Msa0300090 | Msa0552810 | 0.825378 | 4.842266e-54 | -8.615850e-47 |
| Msa0300090 | Msa0566700 | 0.824532 | 7.668837e-54 | -8.615850e-47 |
| Msa0300090 | Msa0692840 | 0.800319 | 1.523626e-48 | -8.615850e-47 |
| Msa0300090 | Msa0784200 | 0.825189 | 5.369196e-54 | -8.615850e-47 |
| Msa0300090 | Msa0818310 | 0.847749 | 9.497944e-60 | -8.615850e-47 |
| Msa0300090 | Msa0858770 | 0.832655 | 8.350093e-56 | -8.615850e-47 |
| Msa0300090 | Msa1013400 | 0.803362 | 3.613926e-49 | -8.615850e-47 |
| Msa0300090 | Msa1081990 | 0.808880 | 2.492139e-50 | -8.615850e-47 |
| Msa0300090 | Msa1126510 | 0.807267 | 5.495017e-50 | -8.615850e-47 |
| Msa0300090 | Msa1126770 | 0.821090 | 4.856375e-53 | -8.615850e-47 |
| Msa0300090 | Msa1127890 | 0.809386 | 1.941300e-50 | -8.615850e-47 |
| Msa0300090 | Msa1165870 | 0.806913 | 6.528904e-50 | -8.615850e-47 |
| Msa0300090 | Msa1210810 | 0.802110 | 6.554514e-49 | -8.615850e-47 |
| Msa0300090 | Msa1218600 | 0.822249 | 2.620938e-53 | -8.615850e-47 |
| Msa0300090 | Msa1251160 | 0.801966 | 7.016962e-49 | -8.615850e-47 |
| Msa0300090 | Msa1259430 | 0.806823 | 6.820614e-50 | -8.615850e-47 |
| Msa0300090 | Msa1283170 | 0.806925 | 6.490830e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300090 | MtrunA17_Chr2g0324821 | 97.857 | 140 | 3 | 0 | 1 | 140 | 1 | 140 | 9.90e-100 | 282 |
| Msa0300090 | MtrunA17_Chr2g0282661 | 66.667 | 144 | 40 | 2 | 2 | 140 | 12 | 152 | 8.88e-65 | 194 |
| Msa0300090 | MtrunA17_Chr5g0413571 | 65.441 | 136 | 43 | 2 | 3 | 138 | 4 | 135 | 5.63e-58 | 176 |
| Msa0300090 | MtrunA17_Chr8g0365411 | 53.788 | 132 | 24 | 1 | 8 | 139 | 9 | 103 | 3.64e-43 | 137 |
| Msa0300090 | MtrunA17_Chr6g0476691 | 67.470 | 83 | 27 | 0 | 57 | 139 | 17 | 99 | 4.01e-37 | 122 |
| Msa0300090 | MtrunA17_Chr5g0438061 | 40.310 | 129 | 64 | 3 | 10 | 137 | 103 | 219 | 3.83e-21 | 85.1 |
| Msa0300090 | MtrunA17_Chr5g0438041 | 42.857 | 133 | 59 | 6 | 10 | 137 | 5 | 125 | 1.10e-20 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300090 | AT2G33845.1 | 71.739 | 138 | 36 | 1 | 3 | 140 | 48 | 182 | 9.85e-69 | 205 |
| Msa0300090 | AT4G28440.1 | 68.889 | 135 | 40 | 1 | 5 | 137 | 15 | 149 | 1.40e-62 | 189 |
| Msa0300090 | AT1G23750.1 | 60.145 | 138 | 51 | 1 | 2 | 139 | 4 | 137 | 4.08e-59 | 179 |
| Msa0300090 | AT1G03810.1 | 67.442 | 129 | 41 | 1 | 7 | 135 | 14 | 141 | 1.51e-58 | 178 |
| Msa0300090 | AT1G10590.2 | 65.185 | 135 | 42 | 3 | 5 | 137 | 6 | 137 | 6.07e-57 | 174 |
| Msa0300090 | AT1G10590.1 | 65.185 | 135 | 42 | 3 | 5 | 137 | 6 | 137 | 6.07e-57 | 174 |
| Msa0300090 | AT1G10590.3 | 65.185 | 135 | 42 | 3 | 5 | 137 | 20 | 151 | 9.07e-57 | 174 |
| Msa0300090 | AT1G23750.2 | 68.421 | 95 | 30 | 0 | 45 | 139 | 6 | 100 | 3.49e-46 | 145 |
Find 46 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGTACACGCAATAAAT+TGG | 0.237468 | 2_3:-55434096 | None:intergenic |
| TCCCTGACTTCAAAATTTGC+AGG | 0.302899 | 2_3:-55433686 | None:intergenic |
| AACACGAAGCTTTGAATCTA+TGG | 0.308708 | 2_3:+55431669 | Msa0300090:exon |
| AAAATATTTAACAATATTTA+CGG | 0.310420 | 2_3:-55434073 | None:intergenic |
| CTCATTAGTTGAATATGAAT+TGG | 0.360041 | 2_3:+55433721 | Msa0300090:CDS |
| AGAGTGTGTCCATTGGTTCC+AGG | 0.375558 | 2_3:-55431745 | None:intergenic |
| TATGCAAGCAGGTTCATATA+TGG | 0.409282 | 2_3:+55433950 | Msa0300090:intron |
| CTATGAGGTTGGCAGTTGAT+AGG | 0.440060 | 2_3:+55433639 | Msa0300090:CDS |
| TCCTAACCGCGGTGGTCGAT+CGG | 0.440345 | 2_3:+55431807 | Msa0300090:CDS |
| CGCAGAATTAAAGTTGCACT+AGG | 0.447646 | 2_3:-55433587 | None:intergenic |
| CACTGTCAGAGTGTGTCCAT+TGG | 0.463476 | 2_3:-55431752 | None:intergenic |
| CGCATTGCTGAATGTCTCAT+TGG | 0.467345 | 2_3:+55431853 | Msa0300090:CDS |
| TGAGGTTGGCAGTTGATAGG+TGG | 0.471269 | 2_3:+55433642 | Msa0300090:CDS |
| TAATTCTTCGCCGGTGAAGA+CGG | 0.477098 | 2_3:+55431783 | Msa0300090:CDS |
| AAGGTCGATCAGCTGAAGCC+TGG | 0.484855 | 2_3:+55431727 | Msa0300090:CDS |
| CAATTTATTGCGTGTACAGT+TGG | 0.492134 | 2_3:+55434097 | Msa0300090:three_prime_UTR |
| TGAACAATTGACTGCTGTGC+AGG | 0.501881 | 2_3:+55433823 | Msa0300090:three_prime_UTR |
| TGCTAAGATTGACATGTTCA+AGG | 0.505137 | 2_3:+55433613 | Msa0300090:CDS |
| GAGGTTGGCAGTTGATAGGT+GGG | 0.510112 | 2_3:+55433643 | Msa0300090:CDS |
| GCCGATCGACCACCGCGGTT+AGG | 0.518836 | 2_3:-55431808 | None:intergenic |
| CACAGCAGTCAATTGTTCAA+TGG | 0.525303 | 2_3:-55433819 | None:intergenic |
| CAGCTGAAGCCTGGAACCAA+TGG | 0.532247 | 2_3:+55431736 | Msa0300090:CDS |
| AATGAGACATTCAGCAATGC+GGG | 0.536511 | 2_3:-55431851 | None:intergenic |
| TGATCGACCTTCACGAACAC+TGG | 0.539292 | 2_3:-55431715 | None:intergenic |
| CGGTTAGGAACCGTCTTCAC+CGG | 0.552526 | 2_3:-55431793 | None:intergenic |
| GAAGGTGGTTAATTCTTCGC+CGG | 0.566549 | 2_3:+55431774 | Msa0300090:CDS |
| ACATGTTCAAGGGATCTATG+AGG | 0.578715 | 2_3:+55433624 | Msa0300090:CDS |
| GCTAAGATTGACATGTTCAA+GGG | 0.579635 | 2_3:+55433614 | Msa0300090:CDS |
| GTTCAAGGGATCTATGAGGT+TGG | 0.593452 | 2_3:+55433628 | Msa0300090:CDS |
| ATTTAGTCTTCAGATTGCTG+TGG | 0.594758 | 2_3:+55433986 | Msa0300090:three_prime_UTR |
| GGTTGGCAGTTGATAGGTGG+GGG | 0.611083 | 2_3:+55433645 | Msa0300090:CDS |
| GCAGAATTAAAGTTGCACTA+GGG | 0.611156 | 2_3:-55433586 | None:intergenic |
| TTCACTGCTCGCAATGAACA+AGG | 0.613603 | 2_3:+55431898 | Msa0300090:CDS |
| TAACCGCGGTGGTCGATCGG+CGG | 0.613647 | 2_3:+55431810 | Msa0300090:CDS |
| TTCTCTTTGAGCAAATCACT+AGG | 0.629960 | 2_3:+55434120 | Msa0300090:three_prime_UTR |
| AAGTTGCACTAGGGTTCATG+AGG | 0.631936 | 2_3:-55433577 | None:intergenic |
| AGGTTGGCAGTTGATAGGTG+GGG | 0.635745 | 2_3:+55433644 | Msa0300090:CDS |
| GCGAAAACCAGTGTTCGTGA+AGG | 0.642463 | 2_3:+55431708 | Msa0300090:CDS |
| AGACATTCAGCAATGCGGGA+AGG | 0.647720 | 2_3:-55431847 | None:intergenic |
| ACACACTCTGACAGTGAAGG+TGG | 0.655149 | 2_3:+55431759 | Msa0300090:CDS |
| TGGACACACTCTGACAGTGA+AGG | 0.666395 | 2_3:+55431756 | Msa0300090:CDS |
| CAATGAGACATTCAGCAATG+CGG | 0.676023 | 2_3:-55431852 | None:intergenic |
| GATCAATTGAAAATTGAACA+AGG | 0.679889 | 2_3:-55431636 | None:intergenic |
| AAGACGGTTCCTAACCGCGG+TGG | 0.697992 | 2_3:+55431799 | Msa0300090:CDS |
| GTGAAGACGGTTCCTAACCG+CGG | 0.698190 | 2_3:+55431796 | Msa0300090:CDS |
| TCACCGCCGATCGACCACCG+CGG | 0.798992 | 2_3:-55431813 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTTTTAATAG+GGG | + | chr2_3:55432579-55432598 | Msa0300090:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTAATAGG+GGG | + | chr2_3:55432580-55432599 | Msa0300090:intron | 10.0% |
| !!! | TAAAAATCGTTGATTTTATA+TGG | + | chr2_3:55432076-55432095 | Msa0300090:intron | 15.0% |
| !!! | ATGTGGTTTTTTATTTAATA+GGG | - | chr2_3:55432511-55432530 | None:intergenic | 15.0% |
| !!! | AATGTGGTTTTTTATTTAAT+AGG | - | chr2_3:55432512-55432531 | None:intergenic | 15.0% |
| !!! | AGTTTAATTCTATTGTTTTA+TGG | + | chr2_3:55432640-55432659 | Msa0300090:intron | 15.0% |
| !!! | TTTATGCGTATTTTTTATTG+TGG | + | chr2_3:55432100-55432119 | Msa0300090:intron | 20.0% |
| !!! | TGTGGTTTTTTATTTAATAG+GGG | - | chr2_3:55432510-55432529 | None:intergenic | 20.0% |
| !! | ATTACATAAAAAGCTTATTC+GGG | - | chr2_3:55432706-55432725 | None:intergenic | 20.0% |
| !! | CATTACATAAAAAGCTTATT+CGG | - | chr2_3:55432707-55432726 | None:intergenic | 20.0% |
| !!! | GAATAAGCTTTTTATGTAAT+GGG | + | chr2_3:55432706-55432725 | Msa0300090:intron | 20.0% |
| ! | GATCAATTGAAAATTGAACA+AGG | - | chr2_3:55431639-55431658 | None:intergenic | 25.0% |
| ! | TGTAATAAGTTCATCATGAT+AGG | + | chr2_3:55432193-55432212 | Msa0300090:intron | 25.0% |
| ! | ATTGATTATACGAAAACAGT+TGG | + | chr2_3:55432231-55432250 | Msa0300090:intron | 25.0% |
| ! | TAAGTAATTGTGAGACTATT+TGG | + | chr2_3:55432296-55432315 | Msa0300090:intron | 25.0% |
| ! | AAGTAATTGTGAGACTATTT+GGG | + | chr2_3:55432297-55432316 | Msa0300090:intron | 25.0% |
| ! | AATAAGTTGTTTATCCATAC+AGG | + | chr2_3:55432399-55432418 | Msa0300090:intron | 25.0% |
| ! | ATAAGTTGTTTATCCATACA+GGG | + | chr2_3:55432400-55432419 | Msa0300090:intron | 25.0% |
| !!! | GTGGTTTTTTATTTAATAGG+GGG | - | chr2_3:55432509-55432528 | None:intergenic | 25.0% |
| ! | TAAATAAAAAACCACATTCC+AGG | + | chr2_3:55432514-55432533 | Msa0300090:intron | 25.0% |
| !! | CGAATAAGCTTTTTATGTAA+TGG | + | chr2_3:55432705-55432724 | Msa0300090:intron | 25.0% |
| ! | AACAAATACTGTAACACAAT+AGG | - | chr2_3:55432868-55432887 | None:intergenic | 25.0% |
| ! | AAAAACATAACACATGAGAA+TGG | - | chr2_3:55433236-55433255 | None:intergenic | 25.0% |
| !! | TATTTTGCCTTTTCAAACTT+TGG | + | chr2_3:55433301-55433320 | Msa0300090:intron | 25.0% |
| !! | ATTTTGCCTTTTCAAACTTT+GGG | + | chr2_3:55433302-55433321 | Msa0300090:intron | 25.0% |
| !!! | ATTCATTTACTTTTATGCAG+TGG | + | chr2_3:55433553-55433572 | Msa0300090:intron | 25.0% |
| ! | CTCATTAGTTGAATATGAAT+TGG | + | chr2_3:55433721-55433740 | Msa0300090:CDS | 25.0% |
| ! | TTCAATGGTCAAACTAAAAA+TGG | - | chr2_3:55433807-55433826 | None:intergenic | 25.0% |
| ! | TGTTCCATTTCTAAGCATTT+TGG | + | chr2_3:55431939-55431958 | Msa0300090:intron | 30.0% |
| TAAGAGTTAAGAACTCTTTC+AGG | - | chr2_3:55431966-55431985 | None:intergenic | 30.0% | |
| GAAAGAGTTCTTAACTCTTA+AGG | + | chr2_3:55431966-55431985 | Msa0300090:intron | 30.0% | |
| ATTATACGAAAACAGTTGGA+GGG | + | chr2_3:55432235-55432254 | Msa0300090:intron | 30.0% | |
| AAGACTCGAATGCATTAATA+TGG | - | chr2_3:55432426-55432445 | None:intergenic | 30.0% | |
| GAATTGGGTTAAAGTGATAT+TGG | + | chr2_3:55432461-55432480 | Msa0300090:intron | 30.0% | |
| AATAGAATTAAACTCACTCG+TGG | - | chr2_3:55432634-55432653 | None:intergenic | 30.0% | |
| AATAGGTTTAACTGTTCAAC+AGG | - | chr2_3:55432851-55432870 | None:intergenic | 30.0% | |
| TACAGTATTTGTTTGACATG+TGG | + | chr2_3:55432875-55432894 | Msa0300090:intron | 30.0% | |
| ACAGTATTTGTTTGACATGT+GGG | + | chr2_3:55432876-55432895 | Msa0300090:intron | 30.0% | |
| GTGATGTTACTGTGATTTAT+AGG | + | chr2_3:55433031-55433050 | Msa0300090:intron | 30.0% | |
| TGATTTATAGGAATCAGTGT+GGG | + | chr2_3:55433043-55433062 | Msa0300090:intron | 30.0% | |
| TAGTGATGTTGCATAAATCA+GGG | + | chr2_3:55433118-55433137 | Msa0300090:intron | 30.0% | |
| !! | AAACTTTGGGTTGGATTTAT+TGG | + | chr2_3:55433315-55433334 | Msa0300090:intron | 30.0% |
| GAATACACTTTCAATCGAAA+CGG | - | chr2_3:55433366-55433385 | None:intergenic | 30.0% | |
| !! | CTTTTGTTTCTTGCTTGTTT+TGG | + | chr2_3:55433486-55433505 | Msa0300090:intron | 30.0% |
| TTTGGAAGATGATATCAGTT+TGG | + | chr2_3:55433504-55433523 | Msa0300090:intron | 30.0% | |
| ! | TGAAGCGAATCTTTTGAATT+TGG | + | chr2_3:55433774-55433793 | Msa0300090:three_prime_UTR | 30.0% |
| !! | AACACGAAGCTTTGAATCTA+TGG | + | chr2_3:55431669-55431688 | Msa0300090:exon | 35.0% |
| AGGTCCAAAATGCTTAGAAA+TGG | - | chr2_3:55431946-55431965 | None:intergenic | 35.0% | |
| ! | TGTTGCTCATTGATTGTGTT+AGG | + | chr2_3:55432030-55432049 | Msa0300090:intron | 35.0% |
| ! | GTTGCTCATTGATTGTGTTA+GGG | + | chr2_3:55432031-55432050 | Msa0300090:intron | 35.0% |
| GAACCTGTGAAAATTGCTTA+TGG | + | chr2_3:55432143-55432162 | Msa0300090:intron | 35.0% | |
| ! | ATGCCATAAGCAATTTTCAC+AGG | - | chr2_3:55432149-55432168 | None:intergenic | 35.0% |
| GATTATACGAAAACAGTTGG+AGG | + | chr2_3:55432234-55432253 | Msa0300090:intron | 35.0% | |
| ! | TCGAGTCTTTTTACAAGATG+TGG | + | chr2_3:55432437-55432456 | Msa0300090:intron | 35.0% |
| ! | CGAGTCTTTTTACAAGATGT+GGG | + | chr2_3:55432438-55432457 | Msa0300090:intron | 35.0% |
| ! | GAGTCTTTTTACAAGATGTG+GGG | + | chr2_3:55432439-55432458 | Msa0300090:intron | 35.0% |
| ! | TTTTACAAGATGTGGGGAAT+TGG | + | chr2_3:55432445-55432464 | Msa0300090:intron | 35.0% |
| TTTACAAGATGTGGGGAATT+GGG | + | chr2_3:55432446-55432465 | Msa0300090:intron | 35.0% | |
| ! | GGGTTAAAGTGATATTGGTT+CGG | + | chr2_3:55432466-55432485 | Msa0300090:intron | 35.0% |
| TTTATGGTTTCTGCCAATGT+TGG | + | chr2_3:55432656-55432675 | Msa0300090:intron | 35.0% | |
| TTATGGTTTCTGCCAATGTT+GGG | + | chr2_3:55432657-55432676 | Msa0300090:intron | 35.0% | |
| ATCATTACAACACTCTAGCT+CGG | - | chr2_3:55432783-55432802 | None:intergenic | 35.0% | |
| AATGAATTTGGGCAACACTA+TGG | - | chr2_3:55432810-55432829 | None:intergenic | 35.0% | |
| ATAGTGTTGCCCAAATTCAT+TGG | + | chr2_3:55432809-55432828 | Msa0300090:intron | 35.0% | |
| CCATACCATCCAATGAATTT+GGG | - | chr2_3:55432821-55432840 | None:intergenic | 35.0% | |
| TCCATACCATCCAATGAATT+TGG | - | chr2_3:55432822-55432841 | None:intergenic | 35.0% | |
| CAGTATTTGTTTGACATGTG+GGG | + | chr2_3:55432877-55432896 | Msa0300090:intron | 35.0% | |
| GTGTAAAAAGAAGTGGTGAA+AGG | + | chr2_3:55432903-55432922 | Msa0300090:intron | 35.0% | |
| AAAGAAGTGGTGAAAGGTTA+TGG | + | chr2_3:55432909-55432928 | Msa0300090:intron | 35.0% | |
| ! | TATGGATGATCTTTGTTGTC+TGG | + | chr2_3:55432927-55432946 | Msa0300090:intron | 35.0% |
| ATGTGCTTGGTTATGATTAG+AGG | + | chr2_3:55432960-55432979 | Msa0300090:intron | 35.0% | |
| GTGATTTATAGGAATCAGTG+TGG | + | chr2_3:55433042-55433061 | Msa0300090:intron | 35.0% | |
| GATTTATAGGAATCAGTGTG+GGG | + | chr2_3:55433044-55433063 | Msa0300090:intron | 35.0% | |
| ! | GGTTGCTATTGCAAAAGAAT+GGG | + | chr2_3:55433065-55433084 | Msa0300090:intron | 35.0% |
| GTAGTGATGTTGCATAAATC+AGG | + | chr2_3:55433117-55433136 | Msa0300090:intron | 35.0% | |
| AGTGATGTTGCATAAATCAG+GGG | + | chr2_3:55433119-55433138 | Msa0300090:intron | 35.0% | |
| !! | TCTCGTGATGTGTTTTTGTT+TGG | + | chr2_3:55433194-55433213 | Msa0300090:intron | 35.0% |
| GAAAAGGCAAAATATACACG+CGG | - | chr2_3:55433295-55433314 | None:intergenic | 35.0% | |
| ATCCAACCCAAAGTTTGAAA+AGG | - | chr2_3:55433311-55433330 | None:intergenic | 35.0% | |
| !! | TTTGGGTTGGATTTATTGGA+TGG | + | chr2_3:55433319-55433338 | Msa0300090:intron | 35.0% |
| GGTATCAGTGAATTCCTATA+TGG | + | chr2_3:55433340-55433359 | Msa0300090:intron | 35.0% | |
| TATTGTAGAGTAAGTTGCAC+TGG | + | chr2_3:55433403-55433422 | Msa0300090:intron | 35.0% | |
| GCATTTAGACAAAGCACAAA+AGG | - | chr2_3:55433467-55433486 | None:intergenic | 35.0% | |
| GCAGAATTAAAGTTGCACTA+GGG | - | chr2_3:55433589-55433608 | None:intergenic | 35.0% | |
| TGCTAAGATTGACATGTTCA+AGG | + | chr2_3:55433613-55433632 | Msa0300090:CDS | 35.0% | |
| GCTAAGATTGACATGTTCAA+GGG | + | chr2_3:55433614-55433633 | Msa0300090:CDS | 35.0% | |
| !!! | AACCTGCAAATTTTGAAGTC+AGG | + | chr2_3:55433684-55433703 | Msa0300090:CDS | 35.0% |
| !!! | ACCTGCAAATTTTGAAGTCA+GGG | + | chr2_3:55433685-55433704 | Msa0300090:CDS | 35.0% |
| ! | AGCGAATCTTTTGAATTTGG+AGG | + | chr2_3:55433777-55433796 | Msa0300090:three_prime_UTR | 35.0% |
| ! | GCGAATCTTTTGAATTTGGA+GGG | + | chr2_3:55433778-55433797 | Msa0300090:three_prime_UTR | 35.0% |
| ! | CGAATCTTTTGAATTTGGAG+GGG | + | chr2_3:55433779-55433798 | Msa0300090:three_prime_UTR | 35.0% |
| ! | ATTTAGTCTTCAGATTGCTG+TGG | + | chr2_3:55433870-55433889 | Msa0300090:intron | 35.0% |
| TATGCAAGCAGGTTCATATA+TGG | + | chr2_3:55433950-55433969 | Msa0300090:intron | 35.0% | |
| ! | ATTTAGTCTTCAGATTGCTG+TGG | + | chr2_3:55433870-55433889 | Msa0300090:intron | 35.0% |
| CAACTGTACACGCAATAAAT+TGG | - | chr2_3:55434099-55434118 | None:intergenic | 35.0% | |
| CAATTTATTGCGTGTACAGT+TGG | + | chr2_3:55434097-55434116 | Msa0300090:three_prime_UTR | 35.0% | |
| TTCTCTTTGAGCAAATCACT+AGG | + | chr2_3:55434120-55434139 | Msa0300090:three_prime_UTR | 35.0% | |
| AATGAGACATTCAGCAATGC+GGG | - | chr2_3:55431854-55431873 | None:intergenic | 40.0% | |
| CAATGAGACATTCAGCAATG+CGG | - | chr2_3:55431855-55431874 | None:intergenic | 40.0% | |
| ! | CTCATTGATTGTGTTAGGGT+GGG | + | chr2_3:55432035-55432054 | Msa0300090:intron | 40.0% |
| ! | TCATTGATTGTGTTAGGGTG+GGG | + | chr2_3:55432036-55432055 | Msa0300090:intron | 40.0% |
| TGTGGCATTGTGAGATTGTT+TGG | + | chr2_3:55432118-55432137 | Msa0300090:intron | 40.0% | |
| ! | AAACAGTTGGAGGGTTTGTT+TGG | + | chr2_3:55432244-55432263 | Msa0300090:intron | 40.0% |
| ! | AACAGTTGGAGGGTTTGTTT+GGG | + | chr2_3:55432245-55432264 | Msa0300090:intron | 40.0% |
| TGCATTAATATGGCCCTGTA+TGG | - | chr2_3:55432416-55432435 | None:intergenic | 40.0% | |
| ! | GTTCGGCTTAAACACACTTT+TGG | + | chr2_3:55432483-55432502 | Msa0300090:intron | 40.0% |
| TTCAAAAGGGGGGAAACTTA+GGG | - | chr2_3:55432542-55432561 | None:intergenic | 40.0% | |
| TTTCAAAAGGGGGGAAACTT+AGG | - | chr2_3:55432543-55432562 | None:intergenic | 40.0% | |
| AGCCCTCTAAGTTTCAAAAG+GGG | - | chr2_3:55432554-55432573 | None:intergenic | 40.0% | |
| CAGCCCTCTAAGTTTCAAAA+GGG | - | chr2_3:55432555-55432574 | None:intergenic | 40.0% | |
| TGTTGCCCAAATTCATTGGA+TGG | + | chr2_3:55432813-55432832 | Msa0300090:intron | 40.0% | |
| CCCAAATTCATTGGATGGTA+TGG | + | chr2_3:55432818-55432837 | Msa0300090:intron | 40.0% | |
| ! | GGGGAAAGTGTAAAAAGAAG+TGG | + | chr2_3:55432896-55432915 | Msa0300090:intron | 40.0% |
| TGCTTGGTTATGATTAGAGG+AGG | + | chr2_3:55432963-55432982 | Msa0300090:intron | 40.0% | |
| ATCACATGCAAGGAACTCAA+AGG | - | chr2_3:55433016-55433035 | None:intergenic | 40.0% | |
| TCACAGTAACATCACATGCA+AGG | - | chr2_3:55433026-55433045 | None:intergenic | 40.0% | |
| ! | GGGTTGCTATTGCAAAAGAA+TGG | + | chr2_3:55433064-55433083 | Msa0300090:intron | 40.0% |
| TGCTATTGCAAAAGAATGGG+TGG | + | chr2_3:55433068-55433087 | Msa0300090:intron | 40.0% | |
| CGCAACAGGACAGAAAAAAA+CGG | - | chr2_3:55433160-55433179 | None:intergenic | 40.0% | |
| !!! | CGTTTTTTTCTGTCCTGTTG+CGG | + | chr2_3:55433158-55433177 | Msa0300090:intron | 40.0% |
| AAACACATCACGAGATTGAC+AGG | - | chr2_3:55433189-55433208 | None:intergenic | 40.0% | |
| ! | TGCCTTTTCAAACTTTGGGT+TGG | + | chr2_3:55433306-55433325 | Msa0300090:intron | 40.0% |
| TTCAATCGAAACGGCCATAT+AGG | - | chr2_3:55433357-55433376 | None:intergenic | 40.0% | |
| ACTCTACAATAGCTTCAGAG+TGG | - | chr2_3:55433394-55433413 | None:intergenic | 40.0% | |
| ATATCCGTCGTTCTATTCCT+TGG | + | chr2_3:55433436-55433455 | Msa0300090:intron | 40.0% | |
| CGCAGAATTAAAGTTGCACT+AGG | - | chr2_3:55433590-55433609 | None:intergenic | 40.0% | |
| ACATGTTCAAGGGATCTATG+AGG | + | chr2_3:55433624-55433643 | Msa0300090:CDS | 40.0% | |
| TCCCTGACTTCAAAATTTGC+AGG | - | chr2_3:55433689-55433708 | None:intergenic | 40.0% | |
| CACAGCAGTCAATTGTTCAA+TGG | - | chr2_3:55433822-55433841 | None:intergenic | 40.0% | |
| TTGCTACCTTCAAAAACGCA+TGG | - | chr2_3:55434150-55434169 | None:intergenic | 40.0% | |
| GAAGGTGGTTAATTCTTCGC+CGG | + | chr2_3:55431774-55431793 | Msa0300090:CDS | 45.0% | |
| TAATTCTTCGCCGGTGAAGA+CGG | + | chr2_3:55431783-55431802 | Msa0300090:CDS | 45.0% | |
| CGCATTGCTGAATGTCTCAT+TGG | + | chr2_3:55431853-55431872 | Msa0300090:CDS | 45.0% | |
| TTCACTGCTCGCAATGAACA+AGG | + | chr2_3:55431898-55431917 | Msa0300090:CDS | 45.0% | |
| ! | GCTCATTGATTGTGTTAGGG+TGG | + | chr2_3:55432034-55432053 | Msa0300090:intron | 45.0% |
| TCAAAAGGGGGGAAACTTAG+GGG | - | chr2_3:55432541-55432560 | None:intergenic | 45.0% | |
| !!! | TCCCCCCTTTTGAAACTTAG+AGG | + | chr2_3:55432548-55432567 | Msa0300090:intron | 45.0% |
| CCCTCTAAGTTTCAAAAGGG+GGG | - | chr2_3:55432552-55432571 | None:intergenic | 45.0% | |
| !!! | CCCCCCTTTTGAAACTTAGA+GGG | + | chr2_3:55432549-55432568 | Msa0300090:intron | 45.0% |
| GCCCTCTAAGTTTCAAAAGG+GGG | - | chr2_3:55432553-55432572 | None:intergenic | 45.0% | |
| CCAGCCCTCTAAGTTTCAAA+AGG | - | chr2_3:55432556-55432575 | None:intergenic | 45.0% | |
| !!! | CCTTTTGAAACTTAGAGGGC+TGG | + | chr2_3:55432553-55432572 | Msa0300090:intron | 45.0% |
| ATCGCAACTTGTGCGAAGTT+AGG | + | chr2_3:55432607-55432626 | Msa0300090:intron | 45.0% | |
| TAGGACACTAGTCCCAACAT+TGG | - | chr2_3:55432672-55432691 | None:intergenic | 45.0% | |
| !! | TATTCGGGAAAGCGTCAGTT+AGG | - | chr2_3:55432691-55432710 | None:intergenic | 45.0% |
| ! | ACTCTAGCTCGGATGCATAT+GGG | - | chr2_3:55432772-55432791 | None:intergenic | 45.0% |
| ! | TGGTTTGTGCATGATGTGCT+TGG | + | chr2_3:55432947-55432966 | Msa0300090:intron | 45.0% |
| TTGCAAAAGAATGGGTGGTG+TGG | + | chr2_3:55433073-55433092 | Msa0300090:intron | 45.0% | |
| ! | TGGGTGGTGTGGCTATATTT+TGG | + | chr2_3:55433084-55433103 | Msa0300090:intron | 45.0% |
| !!! | TTTTTTCTGTCCTGTTGCGG+TGG | + | chr2_3:55433161-55433180 | Msa0300090:intron | 45.0% |
| TGTGCCAAGGAATAGAACGA+CGG | - | chr2_3:55433443-55433462 | None:intergenic | 45.0% | |
| AAGCACAAAAGGATGTGCCA+AGG | - | chr2_3:55433456-55433475 | None:intergenic | 45.0% | |
| AAGTTGCACTAGGGTTCATG+AGG | - | chr2_3:55433580-55433599 | None:intergenic | 45.0% | |
| GTTCAAGGGATCTATGAGGT+TGG | + | chr2_3:55433628-55433647 | Msa0300090:CDS | 45.0% | |
| CTATGAGGTTGGCAGTTGAT+AGG | + | chr2_3:55433639-55433658 | Msa0300090:CDS | 45.0% | |
| TGAACAATTGACTGCTGTGC+AGG | + | chr2_3:55433823-55433842 | Msa0300090:three_prime_UTR | 45.0% | |
| CTGCTGTGCAGGTTCATATA+TGG | + | chr2_3:55433834-55433853 | Msa0300090:intron | 45.0% | |
| GCTTGTGCTTATATGCAAGC+AGG | + | chr2_3:55433939-55433958 | Msa0300090:intron | 45.0% | |
| ! | GGCTTTCCATGCGTTTTTGA+AGG | + | chr2_3:55434141-55434160 | Msa0300090:three_prime_UTR | 45.0% |
| !!! | ATGTTTTTTTTTTTTTTAAT+AGG | + | chr2_3:55432577-55432596 | Msa0300090:intron | 5.0% |
| !!! | TGTTTTTTTTTTTTTTAATA+GGG | + | chr2_3:55432578-55432597 | Msa0300090:intron | 5.0% |
| !! | AAAATATTTAACAATATTTA+CGG | - | chr2_3:55434076-55434095 | None:intergenic | 5.0% |
| GCGAAAACCAGTGTTCGTGA+AGG | + | chr2_3:55431708-55431727 | Msa0300090:CDS | 50.0% | |
| TGATCGACCTTCACGAACAC+TGG | - | chr2_3:55431718-55431737 | None:intergenic | 50.0% | |
| !! | AGAGTGTGTCCATTGGTTCC+AGG | - | chr2_3:55431748-55431767 | None:intergenic | 50.0% |
| CACTGTCAGAGTGTGTCCAT+TGG | - | chr2_3:55431755-55431774 | None:intergenic | 50.0% | |
| TGGACACACTCTGACAGTGA+AGG | + | chr2_3:55431756-55431775 | Msa0300090:CDS | 50.0% | |
| ACACACTCTGACAGTGAAGG+TGG | + | chr2_3:55431759-55431778 | Msa0300090:CDS | 50.0% | |
| AGACATTCAGCAATGCGGGA+AGG | - | chr2_3:55431850-55431869 | None:intergenic | 50.0% | |
| ! | GTTGGAGGGTTTGTTTGGGT+TGG | + | chr2_3:55432249-55432268 | Msa0300090:intron | 50.0% |
| CAAAAGGGGGGAAACTTAGG+GGG | - | chr2_3:55432540-55432559 | None:intergenic | 50.0% | |
| ! | CACTCTAGCTCGGATGCATA+TGG | - | chr2_3:55432773-55432792 | None:intergenic | 50.0% |
| GTTGCATAAATCAGGGGCAG+CGG | + | chr2_3:55433125-55433144 | Msa0300090:intron | 50.0% | |
| TTGCATAAATCAGGGGCAGC+GGG | + | chr2_3:55433126-55433145 | Msa0300090:intron | 50.0% | |
| !! | TGAGGTTGGCAGTTGATAGG+TGG | + | chr2_3:55433642-55433661 | Msa0300090:CDS | 50.0% |
| !! | GAGGTTGGCAGTTGATAGGT+GGG | + | chr2_3:55433643-55433662 | Msa0300090:CDS | 50.0% |
| !! | AGGTTGGCAGTTGATAGGTG+GGG | + | chr2_3:55433644-55433663 | Msa0300090:CDS | 50.0% |
| AAGGTCGATCAGCTGAAGCC+TGG | + | chr2_3:55431727-55431746 | Msa0300090:CDS | 55.0% | |
| CAGCTGAAGCCTGGAACCAA+TGG | + | chr2_3:55431736-55431755 | Msa0300090:CDS | 55.0% | |
| CGGTTAGGAACCGTCTTCAC+CGG | - | chr2_3:55431796-55431815 | None:intergenic | 55.0% | |
| GTGAAGACGGTTCCTAACCG+CGG | + | chr2_3:55431796-55431815 | Msa0300090:CDS | 55.0% | |
| AACTTAGGGGGCCTGGAATG+TGG | - | chr2_3:55432528-55432547 | None:intergenic | 55.0% | |
| TTGACAGGTACCACCGCAAC+AGG | - | chr2_3:55433174-55433193 | None:intergenic | 55.0% | |
| !! | GGTTGGCAGTTGATAGGTGG+GGG | + | chr2_3:55433645-55433664 | Msa0300090:CDS | 55.0% |
| ! | TGATAGGTGGGGGCGTATAG+AGG | + | chr2_3:55433655-55433674 | Msa0300090:CDS | 55.0% |
| AAGACGGTTCCTAACCGCGG+TGG | + | chr2_3:55431799-55431818 | Msa0300090:CDS | 60.0% | |
| TCCTAACCGCGGTGGTCGAT+CGG | + | chr2_3:55431807-55431826 | Msa0300090:CDS | 60.0% | |
| TAACCGCGGTGGTCGATCGG+CGG | + | chr2_3:55431810-55431829 | Msa0300090:CDS | 65.0% | |
| GCCGATCGACCACCGCGGTT+AGG | - | chr2_3:55431811-55431830 | None:intergenic | 70.0% | |
| TCACCGCCGATCGACCACCG+CGG | - | chr2_3:55431816-55431835 | None:intergenic | 70.0% | |
| GGGGGGAAACTTAGGGGGCC+TGG | - | chr2_3:55432535-55432554 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 55431624 | 55434192 | 55431624 | ID=Msa0300090;Name=Msa0300090 |
| chr2_3 | mRNA | 55431624 | 55434192 | 55431624 | ID=Msa0300090-mRNA-1;Parent=Msa0300090;Name=Msa0300090-mRNA-1;_AED=0.38;_eAED=0.38;_QI=64|1|1|1|0.5|0.33|3|313|140 |
| chr2_3 | exon | 55431624 | 55431919 | 55431624 | ID=Msa0300090-mRNA-1:exon:17722;Parent=Msa0300090-mRNA-1 |
| chr2_3 | exon | 55433573 | 55433844 | 55433573 | ID=Msa0300090-mRNA-1:exon:17723;Parent=Msa0300090-mRNA-1 |
| chr2_3 | exon | 55433961 | 55434192 | 55433961 | ID=Msa0300090-mRNA-1:exon:17724;Parent=Msa0300090-mRNA-1 |
| chr2_3 | five_prime_UTR | 55431624 | 55431687 | 55431624 | ID=Msa0300090-mRNA-1:five_prime_utr;Parent=Msa0300090-mRNA-1 |
| chr2_3 | CDS | 55431688 | 55431919 | 55431688 | ID=Msa0300090-mRNA-1:cds;Parent=Msa0300090-mRNA-1 |
| chr2_3 | CDS | 55433573 | 55433763 | 55433573 | ID=Msa0300090-mRNA-1:cds;Parent=Msa0300090-mRNA-1 |
| chr2_3 | three_prime_UTR | 55433764 | 55433844 | 55433764 | ID=Msa0300090-mRNA-1:three_prime_utr;Parent=Msa0300090-mRNA-1 |
| chr2_3 | three_prime_UTR | 55433961 | 55434192 | 55433961 | ID=Msa0300090-mRNA-1:three_prime_utr;Parent=Msa0300090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
