AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165870 MtrunA17_Chr7g0271081 98.413 63 1 0 1 63 1 63 3.75e-39 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165870 AT1G73177.1 71.667 60 17 0 1 60 1 60 4.39e-16 65.5

Find 30 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCTCCAAATTTCCAAAA+AGG 0.261906 7_4:-57894742 None:intergenic
TGATAGACATTAAGAAATTT+CGG 0.335030 7_4:+57894536 Msa1165870:three_prime_UTR
TTGTCAACAGTGTTTGGTTT+GGG 0.342904 7_4:+57894679 Msa1165870:three_prime_UTR
TGTTTGGTTTGGGAAATAAA+AGG 0.351855 7_4:+57894689 Msa1165870:three_prime_UTR
TCAGTTGGGCGTTTATATAA+TGG 0.358701 7_4:+57892969 None:intergenic
GGAGGCACAACAAGTTAATA+AGG 0.370280 7_4:+57894410 Msa1165870:CDS
TGCCTCCAACACTGGTTGTT+CGG 0.370391 7_4:+57893841 Msa1165870:CDS
TTTGTCAACAGTGTTTGGTT+TGG 0.401354 7_4:+57894678 Msa1165870:three_prime_UTR
TTTATTGAAACTTCTACTCT+TGG 0.408151 7_4:-57894458 None:intergenic
ATTGTTCTCAATCTGATTGA+AGG 0.429237 7_4:+57893025 Msa1165870:five_prime_UTR
AAAGGCAACCTTATGCATAA+TGG 0.429348 7_4:+57894619 Msa1165870:three_prime_UTR
GCTTGGCACGATCTTGCCCT+TGG 0.435718 7_4:+57894435 Msa1165870:CDS
AAAATGGCAGAACTGAGTTT+GGG 0.446438 7_4:+57893244 Msa1165870:exon
TTGACATTGTTGATGAGGAT+TGG 0.447381 7_4:+57893275 Msa1165870:CDS
ACAACCAGTGTTGGAGGCAG+TGG 0.463826 7_4:-57893837 None:intergenic
GTAATCTACCATTATGCATA+AGG 0.482948 7_4:-57894627 None:intergenic
TGTCTATCACATACATAGAA+AGG 0.488465 7_4:-57894522 None:intergenic
TCTTCCACTGCCTCCAACAC+TGG 0.491395 7_4:+57893833 Msa1165870:CDS
GAAACTTCTACTCTTGGCCA+AGG 0.510239 7_4:-57894452 None:intergenic
TCTAATTGACATTGTTGATG+AGG 0.512652 7_4:+57893270 Msa1165870:CDS
AACAAGTTAATAAGGATGCT+TGG 0.520232 7_4:+57894418 Msa1165870:CDS
GTCCGAACAACCAGTGTTGG+AGG 0.546833 7_4:-57893843 None:intergenic
TGTCATGCTTAGTAGTAAGT+AGG 0.548709 7_4:+57894493 Msa1165870:three_prime_UTR
AGAGACATTCTTCCTCAAGA+TGG 0.570997 7_4:+57893301 Msa1165870:CDS
TCTGTCCGAACAACCAGTGT+TGG 0.577627 7_4:-57893846 None:intergenic
TATCACATACATAGAAAGGA+AGG 0.591643 7_4:-57894518 None:intergenic
TGGTTTGGGAAATAAAAGGA+TGG 0.592378 7_4:+57894693 Msa1165870:three_prime_UTR
TTGTTGTTAATCAGATCAGG+AGG 0.619606 7_4:+57894392 Msa1165870:intron
AAACTTCTACTCTTGGCCAA+GGG 0.628656 7_4:-57894451 None:intergenic
TGTTCGGACAGATGATACTG+AGG 0.734610 7_4:+57893857 Msa1165870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATCAATATACAATAT+AGG - chr7_4:57893613-57893632 None:intergenic 10.0%
!! AATTTATCAATATACAATAT+AGG - chr7_4:57893613-57893632 None:intergenic 10.0%
!! AAAAAAAAAATACCATCTTG+AGG - chr7_4:57893316-57893335 None:intergenic 20.0%
!! TAAAAAACAGTTGCAAAAAA+AGG + chr7_4:57893437-57893456 Msa1165870:intron 20.0%
!!! ACTTCTTATTTCATTTACAA+TGG - chr7_4:57893509-57893528 None:intergenic 20.0%
!! CAAATATAACAAAGTATAGA+TGG + chr7_4:57893678-57893697 Msa1165870:intron 20.0%
!! TTTAAAAGAAAATGTGTTCT+TGG + chr7_4:57894085-57894104 Msa1165870:intron 20.0%
!!! ATGTTTTCAAACTTATATGT+CGG + chr7_4:57894265-57894284 Msa1165870:intron 20.0%
!! TGATAGACATTAAGAAATTT+CGG + chr7_4:57894536-57894555 Msa1165870:three_prime_UTR 20.0%
!! AAAAAAAAAATACCATCTTG+AGG - chr7_4:57893316-57893335 None:intergenic 20.0%
!! TAAAAAACAGTTGCAAAAAA+AGG + chr7_4:57893437-57893456 Msa1165870:intron 20.0%
!!! ACTTCTTATTTCATTTACAA+TGG - chr7_4:57893509-57893528 None:intergenic 20.0%
!! CAAATATAACAAAGTATAGA+TGG + chr7_4:57893678-57893697 Msa1165870:intron 20.0%
!! TTTAAAAGAAAATGTGTTCT+TGG + chr7_4:57894085-57894104 Msa1165870:intron 20.0%
!!! ATGTTTTCAAACTTATATGT+CGG + chr7_4:57894265-57894284 Msa1165870:intron 20.0%
!! TGATAGACATTAAGAAATTT+CGG + chr7_4:57894536-57894555 Msa1165870:three_prime_UTR 20.0%
! AATGAAGAGAAAGATGAATT+TGG - chr7_4:57893126-57893145 None:intergenic 25.0%
!! AACGACAAGAATTAGATTTT+GGG - chr7_4:57893195-57893214 None:intergenic 25.0%
!! AAACGACAAGAATTAGATTT+TGG - chr7_4:57893196-57893215 None:intergenic 25.0%
!!! ATTTTGTGTTATTAACAGTG+TGG + chr7_4:57893217-57893236 Msa1165870:intron 25.0%
! GTAAAATTAGTATACACTGA+CGG - chr7_4:57893377-57893396 None:intergenic 25.0%
! TCAATATACAATATAGGACA+GGG - chr7_4:57893607-57893626 None:intergenic 25.0%
! ATCAATATACAATATAGGAC+AGG - chr7_4:57893608-57893627 None:intergenic 25.0%
! TATAACAAAGTATAGATGGT+TGG + chr7_4:57893682-57893701 Msa1165870:intron 25.0%
!! CTTTAAAAGTTGCAATTTAG+TGG + chr7_4:57894037-57894056 Msa1165870:intron 25.0%
!! TGTTTTCAAACTTATATGTC+GGG + chr7_4:57894266-57894285 Msa1165870:intron 25.0%
! ATTGATTATTGTTCATGAGA+TGG + chr7_4:57894311-57894330 Msa1165870:intron 25.0%
! TTGATTATTGTTCATGAGAT+GGG + chr7_4:57894312-57894331 Msa1165870:intron 25.0%
! TTTATTGAAACTTCTACTCT+TGG - chr7_4:57894461-57894480 None:intergenic 25.0%
!!! ATTTTTGCTTTGAACTCTAA+AGG + chr7_4:57894601-57894620 Msa1165870:three_prime_UTR 25.0%
!! TAAATTTTGTCAACAGTGTT+TGG + chr7_4:57894673-57894692 Msa1165870:three_prime_UTR 25.0%
!! AATAAAATCTCTTGCCTTTT+TGG + chr7_4:57894728-57894747 Msa1165870:three_prime_UTR 25.0%
! AATGAAGAGAAAGATGAATT+TGG - chr7_4:57893126-57893145 None:intergenic 25.0%
!! AACGACAAGAATTAGATTTT+GGG - chr7_4:57893195-57893214 None:intergenic 25.0%
!! AAACGACAAGAATTAGATTT+TGG - chr7_4:57893196-57893215 None:intergenic 25.0%
!!! ATTTTGTGTTATTAACAGTG+TGG + chr7_4:57893217-57893236 Msa1165870:intron 25.0%
! GTAAAATTAGTATACACTGA+CGG - chr7_4:57893377-57893396 None:intergenic 25.0%
! TCAATATACAATATAGGACA+GGG - chr7_4:57893607-57893626 None:intergenic 25.0%
! ATCAATATACAATATAGGAC+AGG - chr7_4:57893608-57893627 None:intergenic 25.0%
! TATAACAAAGTATAGATGGT+TGG + chr7_4:57893682-57893701 Msa1165870:intron 25.0%
!! CTTTAAAAGTTGCAATTTAG+TGG + chr7_4:57894037-57894056 Msa1165870:intron 25.0%
!! TGTTTTCAAACTTATATGTC+GGG + chr7_4:57894266-57894285 Msa1165870:intron 25.0%
! ATTGATTATTGTTCATGAGA+TGG + chr7_4:57894311-57894330 Msa1165870:intron 25.0%
! TTGATTATTGTTCATGAGAT+GGG + chr7_4:57894312-57894331 Msa1165870:intron 25.0%
! TTTATTGAAACTTCTACTCT+TGG - chr7_4:57894461-57894480 None:intergenic 25.0%
!!! ATTTTTGCTTTGAACTCTAA+AGG + chr7_4:57894601-57894620 Msa1165870:three_prime_UTR 25.0%
!! TAAATTTTGTCAACAGTGTT+TGG + chr7_4:57894673-57894692 Msa1165870:three_prime_UTR 25.0%
!! AATAAAATCTCTTGCCTTTT+TGG + chr7_4:57894728-57894747 Msa1165870:three_prime_UTR 25.0%
ATTGTTCTCAATCTGATTGA+AGG + chr7_4:57893025-57893044 Msa1165870:five_prime_UTR 30.0%
! GGTTAGGGATAATTTGAAAT+TGG - chr7_4:57893166-57893185 None:intergenic 30.0%
! ACGACAAGAATTAGATTTTG+GGG - chr7_4:57893194-57893213 None:intergenic 30.0%
TTAACAGTGTGGAGAAAAAA+TGG + chr7_4:57893228-57893247 Msa1165870:intron 30.0%
TCTAATTGACATTGTTGATG+AGG + chr7_4:57893270-57893289 Msa1165870:CDS 30.0%
AATCTATTTGTAGTTGACGT+TGG - chr7_4:57893401-57893420 None:intergenic 30.0%
AAAAAGGCTACATAGCAAAA+TGG + chr7_4:57893453-57893472 Msa1165870:intron 30.0%
TACGAAGAGAATGTAAGTTT+AGG + chr7_4:57893723-57893742 Msa1165870:intron 30.0%
ACGAAGAGAATGTAAGTTTA+GGG + chr7_4:57893724-57893743 Msa1165870:intron 30.0%
! TTGATAATTGATATCCACGT+GGG + chr7_4:57893778-57893797 Msa1165870:intron 30.0%
TAAACTAAGCTCAAGAAAGA+TGG - chr7_4:57893933-57893952 None:intergenic 30.0%
GAATTGCTTCAATGAAAACA+TGG + chr7_4:57894059-57894078 Msa1165870:intron 30.0%
AACTATATATGTTGCCATGT+TGG + chr7_4:57894210-57894229 Msa1165870:intron 30.0%
! GTTTTCAAACTTATATGTCG+GGG + chr7_4:57894267-57894286 Msa1165870:intron 30.0%
GGCTACATAACTTATAATAG+TGG + chr7_4:57894288-57894307 Msa1165870:intron 30.0%
CTGATTAACAACAAATCACA+TGG - chr7_4:57894386-57894405 None:intergenic 30.0%
!! GATTTGTTGTTAATCAGATC+AGG + chr7_4:57894389-57894408 Msa1165870:intron 30.0%
AACAAGTTAATAAGGATGCT+TGG + chr7_4:57894418-57894437 Msa1165870:CDS 30.0%
TATCACATACATAGAAAGGA+AGG - chr7_4:57894521-57894540 None:intergenic 30.0%
TGTCTATCACATACATAGAA+AGG - chr7_4:57894525-57894544 None:intergenic 30.0%
GTAATCTACCATTATGCATA+AGG - chr7_4:57894630-57894649 None:intergenic 30.0%
!! TGTTTGGTTTGGGAAATAAA+AGG + chr7_4:57894689-57894708 Msa1165870:three_prime_UTR 30.0%
!! TCTTGCCTTTTTGGAAATTT+GGG + chr7_4:57894737-57894756 Msa1165870:three_prime_UTR 30.0%
ATTGTTCTCAATCTGATTGA+AGG + chr7_4:57893025-57893044 Msa1165870:five_prime_UTR 30.0%
! GGTTAGGGATAATTTGAAAT+TGG - chr7_4:57893166-57893185 None:intergenic 30.0%
! ACGACAAGAATTAGATTTTG+GGG - chr7_4:57893194-57893213 None:intergenic 30.0%
TTAACAGTGTGGAGAAAAAA+TGG + chr7_4:57893228-57893247 Msa1165870:intron 30.0%
TCTAATTGACATTGTTGATG+AGG + chr7_4:57893270-57893289 Msa1165870:CDS 30.0%
AATCTATTTGTAGTTGACGT+TGG - chr7_4:57893401-57893420 None:intergenic 30.0%
AAAAAGGCTACATAGCAAAA+TGG + chr7_4:57893453-57893472 Msa1165870:intron 30.0%
TACGAAGAGAATGTAAGTTT+AGG + chr7_4:57893723-57893742 Msa1165870:intron 30.0%
ACGAAGAGAATGTAAGTTTA+GGG + chr7_4:57893724-57893743 Msa1165870:intron 30.0%
! TTGATAATTGATATCCACGT+GGG + chr7_4:57893778-57893797 Msa1165870:intron 30.0%
TAAACTAAGCTCAAGAAAGA+TGG - chr7_4:57893933-57893952 None:intergenic 30.0%
GAATTGCTTCAATGAAAACA+TGG + chr7_4:57894059-57894078 Msa1165870:intron 30.0%
AACTATATATGTTGCCATGT+TGG + chr7_4:57894210-57894229 Msa1165870:intron 30.0%
! GTTTTCAAACTTATATGTCG+GGG + chr7_4:57894267-57894286 Msa1165870:intron 30.0%
GGCTACATAACTTATAATAG+TGG + chr7_4:57894288-57894307 Msa1165870:intron 30.0%
CTGATTAACAACAAATCACA+TGG - chr7_4:57894386-57894405 None:intergenic 30.0%
!! GATTTGTTGTTAATCAGATC+AGG + chr7_4:57894389-57894408 Msa1165870:intron 30.0%
AACAAGTTAATAAGGATGCT+TGG + chr7_4:57894418-57894437 Msa1165870:CDS 30.0%
TATCACATACATAGAAAGGA+AGG - chr7_4:57894521-57894540 None:intergenic 30.0%
TGTCTATCACATACATAGAA+AGG - chr7_4:57894525-57894544 None:intergenic 30.0%
GTAATCTACCATTATGCATA+AGG - chr7_4:57894630-57894649 None:intergenic 30.0%
!! TGTTTGGTTTGGGAAATAAA+AGG + chr7_4:57894689-57894708 Msa1165870:three_prime_UTR 30.0%
GAATTTGGAGAAGAGAGATA+AGG - chr7_4:57893111-57893130 None:intergenic 35.0%
!! GAATTAGATTTTGGGGGTTA+GGG - chr7_4:57893187-57893206 None:intergenic 35.0%
!! AGAATTAGATTTTGGGGGTT+AGG - chr7_4:57893188-57893207 None:intergenic 35.0%
! CGACAAGAATTAGATTTTGG+GGG - chr7_4:57893193-57893212 None:intergenic 35.0%
AAAAATGGCAGAACTGAGTT+TGG + chr7_4:57893243-57893262 Msa1165870:exon 35.0%
AAAATGGCAGAACTGAGTTT+GGG + chr7_4:57893244-57893263 Msa1165870:exon 35.0%
! TTGACATTGTTGATGAGGAT+TGG + chr7_4:57893275-57893294 Msa1165870:CDS 35.0%
ATACAATATAGGACAGGGAT+GGG - chr7_4:57893602-57893621 None:intergenic 35.0%
TATACAATATAGGACAGGGA+TGG - chr7_4:57893603-57893622 None:intergenic 35.0%
GATAAATTGTCCTGAACTGA+CGG + chr7_4:57893625-57893644 Msa1165870:intron 35.0%
AGAGAATGTAAGTTTAGGGA+TGG + chr7_4:57893728-57893747 Msa1165870:intron 35.0%
AGTTTAGGGATGGATGAAAT+TGG + chr7_4:57893738-57893757 Msa1165870:intron 35.0%
! CTTGATAATTGATATCCACG+TGG + chr7_4:57893777-57893796 Msa1165870:intron 35.0%
GACTAAAGCAGTTACATTTG+TGG + chr7_4:57893904-57893923 Msa1165870:intron 35.0%
! GTATTAAGCACACGTTGATT+TGG + chr7_4:57893966-57893985 Msa1165870:intron 35.0%
! TTGTTGTTAATCAGATCAGG+AGG + chr7_4:57894392-57894411 Msa1165870:intron 35.0%
TGTCATGCTTAGTAGTAAGT+AGG + chr7_4:57894493-57894512 Msa1165870:three_prime_UTR 35.0%
AAAGGCAACCTTATGCATAA+TGG + chr7_4:57894619-57894638 Msa1165870:three_prime_UTR 35.0%
TTTGTCAACAGTGTTTGGTT+TGG + chr7_4:57894678-57894697 Msa1165870:three_prime_UTR 35.0%
! TTGTCAACAGTGTTTGGTTT+GGG + chr7_4:57894679-57894698 Msa1165870:three_prime_UTR 35.0%
! TGGTTTGGGAAATAAAAGGA+TGG + chr7_4:57894693-57894712 Msa1165870:three_prime_UTR 35.0%
!! CTCTTGCCTTTTTGGAAATT+TGG + chr7_4:57894736-57894755 Msa1165870:three_prime_UTR 35.0%
GAATTTGGAGAAGAGAGATA+AGG - chr7_4:57893111-57893130 None:intergenic 35.0%
!! GAATTAGATTTTGGGGGTTA+GGG - chr7_4:57893187-57893206 None:intergenic 35.0%
!! AGAATTAGATTTTGGGGGTT+AGG - chr7_4:57893188-57893207 None:intergenic 35.0%
! CGACAAGAATTAGATTTTGG+GGG - chr7_4:57893193-57893212 None:intergenic 35.0%
AAAAATGGCAGAACTGAGTT+TGG + chr7_4:57893243-57893262 Msa1165870:exon 35.0%
AAAATGGCAGAACTGAGTTT+GGG + chr7_4:57893244-57893263 Msa1165870:exon 35.0%
! TTGACATTGTTGATGAGGAT+TGG + chr7_4:57893275-57893294 Msa1165870:CDS 35.0%
ATACAATATAGGACAGGGAT+GGG - chr7_4:57893602-57893621 None:intergenic 35.0%
TATACAATATAGGACAGGGA+TGG - chr7_4:57893603-57893622 None:intergenic 35.0%
GATAAATTGTCCTGAACTGA+CGG + chr7_4:57893625-57893644 Msa1165870:intron 35.0%
AGAGAATGTAAGTTTAGGGA+TGG + chr7_4:57893728-57893747 Msa1165870:intron 35.0%
AGTTTAGGGATGGATGAAAT+TGG + chr7_4:57893738-57893757 Msa1165870:intron 35.0%
! CTTGATAATTGATATCCACG+TGG + chr7_4:57893777-57893796 Msa1165870:intron 35.0%
GACTAAAGCAGTTACATTTG+TGG + chr7_4:57893904-57893923 Msa1165870:intron 35.0%
! GTATTAAGCACACGTTGATT+TGG + chr7_4:57893966-57893985 Msa1165870:intron 35.0%
! TTGTTGTTAATCAGATCAGG+AGG + chr7_4:57894392-57894411 Msa1165870:intron 35.0%
TGTCATGCTTAGTAGTAAGT+AGG + chr7_4:57894493-57894512 Msa1165870:three_prime_UTR 35.0%
AAAGGCAACCTTATGCATAA+TGG + chr7_4:57894619-57894638 Msa1165870:three_prime_UTR 35.0%
TTTGTCAACAGTGTTTGGTT+TGG + chr7_4:57894678-57894697 Msa1165870:three_prime_UTR 35.0%
! TTGTCAACAGTGTTTGGTTT+GGG + chr7_4:57894679-57894698 Msa1165870:three_prime_UTR 35.0%
! TGGTTTGGGAAATAAAAGGA+TGG + chr7_4:57894693-57894712 Msa1165870:three_prime_UTR 35.0%
!! CTGATTGAAGGCAGTTTTAG+TGG + chr7_4:57893037-57893056 Msa1165870:five_prime_UTR 40.0%
AGAGACATTCTTCCTCAAGA+TGG + chr7_4:57893301-57893320 Msa1165870:CDS 40.0%
TATGCACGCTGTTGTCTAAT+TGG - chr7_4:57893485-57893504 None:intergenic 40.0%
CAAATATGTACCGTCAGTTC+AGG - chr7_4:57893638-57893657 None:intergenic 40.0%
ATCAGATTTACATTCCCACG+TGG - chr7_4:57893795-57893814 None:intergenic 40.0%
!! CACACGTTGATTTGGTTGAT+GGG + chr7_4:57893974-57893993 Msa1165870:intron 40.0%
ACAATGCATTACTGACAGTG+TGG + chr7_4:57894140-57894159 Msa1165870:intron 40.0%
ACAGTGTGGCATGTAAACAA+CGG + chr7_4:57894154-57894173 Msa1165870:intron 40.0%
ATATGTTGCCATGTTGGTGT+CGG + chr7_4:57894216-57894235 Msa1165870:intron 40.0%
! TCATGAGATGGGTCTTATGT+TGG + chr7_4:57894323-57894342 Msa1165870:intron 40.0%
! GGAGGCACAACAAGTTAATA+AGG + chr7_4:57894410-57894429 Msa1165870:CDS 40.0%
AAACTTCTACTCTTGGCCAA+GGG - chr7_4:57894454-57894473 None:intergenic 40.0%
!! CTGATTGAAGGCAGTTTTAG+TGG + chr7_4:57893037-57893056 Msa1165870:five_prime_UTR 40.0%
AGAGACATTCTTCCTCAAGA+TGG + chr7_4:57893301-57893320 Msa1165870:CDS 40.0%
TATGCACGCTGTTGTCTAAT+TGG - chr7_4:57893485-57893504 None:intergenic 40.0%
CAAATATGTACCGTCAGTTC+AGG - chr7_4:57893638-57893657 None:intergenic 40.0%
ATCAGATTTACATTCCCACG+TGG - chr7_4:57893795-57893814 None:intergenic 40.0%
!! CACACGTTGATTTGGTTGAT+GGG + chr7_4:57893974-57893993 Msa1165870:intron 40.0%
ACAATGCATTACTGACAGTG+TGG + chr7_4:57894140-57894159 Msa1165870:intron 40.0%
ACAGTGTGGCATGTAAACAA+CGG + chr7_4:57894154-57894173 Msa1165870:intron 40.0%
ATATGTTGCCATGTTGGTGT+CGG + chr7_4:57894216-57894235 Msa1165870:intron 40.0%
! TCATGAGATGGGTCTTATGT+TGG + chr7_4:57894323-57894342 Msa1165870:intron 40.0%
! GGAGGCACAACAAGTTAATA+AGG + chr7_4:57894410-57894429 Msa1165870:CDS 40.0%
AAACTTCTACTCTTGGCCAA+GGG - chr7_4:57894454-57894473 None:intergenic 40.0%
!! GATTTTGGGGGTTAGGGTTA+GGG - chr7_4:57893181-57893200 None:intergenic 45.0%
!! AGATTTTGGGGGTTAGGGTT+AGG - chr7_4:57893182-57893201 None:intergenic 45.0%
TGTTCGGACAGATGATACTG+AGG + chr7_4:57893857-57893876 Msa1165870:CDS 45.0%
!! GCACACGTTGATTTGGTTGA+TGG + chr7_4:57893973-57893992 Msa1165870:intron 45.0%
TGTCGGATACAGACACATGT+TGG + chr7_4:57894233-57894252 Msa1165870:intron 45.0%
! TGAGATGGGTCTTATGTTGG+AGG + chr7_4:57894326-57894345 Msa1165870:intron 45.0%
GAAACTTCTACTCTTGGCCA+AGG - chr7_4:57894455-57894474 None:intergenic 45.0%
!! GATTTTGGGGGTTAGGGTTA+GGG - chr7_4:57893181-57893200 None:intergenic 45.0%
!! AGATTTTGGGGGTTAGGGTT+AGG - chr7_4:57893182-57893201 None:intergenic 45.0%
TGTTCGGACAGATGATACTG+AGG + chr7_4:57893857-57893876 Msa1165870:CDS 45.0%
!! GCACACGTTGATTTGGTTGA+TGG + chr7_4:57893973-57893992 Msa1165870:intron 45.0%
TGTCGGATACAGACACATGT+TGG + chr7_4:57894233-57894252 Msa1165870:intron 45.0%
! TGAGATGGGTCTTATGTTGG+AGG + chr7_4:57894326-57894345 Msa1165870:intron 45.0%
GAAACTTCTACTCTTGGCCA+AGG - chr7_4:57894455-57894474 None:intergenic 45.0%
! TGCCTCCAACACTGGTTGTT+CGG + chr7_4:57893841-57893860 Msa1165870:CDS 50.0%
TCTGTCCGAACAACCAGTGT+TGG - chr7_4:57893849-57893868 None:intergenic 50.0%
GTCTGTATCCGACACCAACA+TGG - chr7_4:57894227-57894246 None:intergenic 50.0%
! TGCCTCCAACACTGGTTGTT+CGG + chr7_4:57893841-57893860 Msa1165870:CDS 50.0%
TCTGTCCGAACAACCAGTGT+TGG - chr7_4:57893849-57893868 None:intergenic 50.0%
GTCTGTATCCGACACCAACA+TGG - chr7_4:57894227-57894246 None:intergenic 50.0%
TCGCTGAGTCTCAGTCAGTC+AGG + chr7_4:57893083-57893102 Msa1165870:five_prime_UTR 55.0%
TCTTCCACTGCCTCCAACAC+TGG + chr7_4:57893833-57893852 Msa1165870:CDS 55.0%
! ACAACCAGTGTTGGAGGCAG+TGG - chr7_4:57893840-57893859 None:intergenic 55.0%
! GTCCGAACAACCAGTGTTGG+AGG - chr7_4:57893846-57893865 None:intergenic 55.0%
TCGCTGAGTCTCAGTCAGTC+AGG + chr7_4:57893083-57893102 Msa1165870:five_prime_UTR 55.0%
TCTTCCACTGCCTCCAACAC+TGG + chr7_4:57893833-57893852 Msa1165870:CDS 55.0%
! ACAACCAGTGTTGGAGGCAG+TGG - chr7_4:57893840-57893859 None:intergenic 55.0%
! GTCCGAACAACCAGTGTTGG+AGG - chr7_4:57893846-57893865 None:intergenic 55.0%
GCTTGGCACGATCTTGCCCT+TGG + chr7_4:57894435-57894454 Msa1165870:CDS 60.0%
GCTTGGCACGATCTTGCCCT+TGG + chr7_4:57894435-57894454 Msa1165870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57892976 57894757 57892976 ID=Msa1165870;Name=Msa1165870
chr7_4 mRNA 57892976 57894757 57892976 ID=Msa1165870-mRNA-1;Parent=Msa1165870;Name=Msa1165870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=141|1|1|1|0.66|0.5|4|290|63
chr7_4 exon 57892976 57893104 57892976 ID=Msa1165870-mRNA-1:exon:17566;Parent=Msa1165870-mRNA-1
chr7_4 exon 57893235 57893322 57893235 ID=Msa1165870-mRNA-1:exon:17567;Parent=Msa1165870-mRNA-1
chr7_4 exon 57893832 57893885 57893832 ID=Msa1165870-mRNA-1:exon:17568;Parent=Msa1165870-mRNA-1
chr7_4 exon 57894406 57894757 57894406 ID=Msa1165870-mRNA-1:exon:17569;Parent=Msa1165870-mRNA-1
chr7_4 five_prime_UTR 57892976 57893104 57892976 ID=Msa1165870-mRNA-1:five_prime_utr;Parent=Msa1165870-mRNA-1
chr7_4 five_prime_UTR 57893235 57893246 57893235 ID=Msa1165870-mRNA-1:five_prime_utr;Parent=Msa1165870-mRNA-1
chr7_4 CDS 57893247 57893322 57893247 ID=Msa1165870-mRNA-1:cds;Parent=Msa1165870-mRNA-1
chr7_4 CDS 57893832 57893885 57893832 ID=Msa1165870-mRNA-1:cds;Parent=Msa1165870-mRNA-1
chr7_4 CDS 57894406 57894467 57894406 ID=Msa1165870-mRNA-1:cds;Parent=Msa1165870-mRNA-1
chr7_4 three_prime_UTR 57894468 57894757 57894468 ID=Msa1165870-mRNA-1:three_prime_utr;Parent=Msa1165870-mRNA-1
Gene Sequence

>Msa1165870

ATGGCAGAACTGAGTTTGGGAATTCTAATTGACATTGTTGATGAGGATTGGATGAGAGACATTCTTCCTCAAGATGATCTTCCACTGCCTCCAACACTGGTTGTTCGGACAGATGATACTGAGGACTCAAATCAGGAGGCACAACAAGTTAATAAGGATGCTTGGCACGATCTTGCCCTTGGCCAAGAGTAG

Protein sequence

>Msa1165870

MAELSLGILIDIVDEDWMRDILPQDDLPLPPTLVVRTDDTEDSNQEAQQVNKDAWHDLALGQE*