AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1283170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283170 MtrunA17_Chr8g0354981 98.333 60 1 0 1 60 1 60 2.43e-38 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283170 AT3G15395.5 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1283170 AT3G15395.2 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1283170 AT3G15395.3 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1283170 AT3G15395.4 65.000 60 20 1 1 60 1 59 3.70e-24 85.5
Msa1283170 AT3G15395.1 65.000 60 20 1 1 60 1 59 3.70e-24 85.5

Find 47 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATAAGAGTCTTTCTAAA+AGG 0.197753 8_3:+24700321 Msa1283170:three_prime_UTR
TGTTAAAATTGTATACTTTC+AGG 0.214295 8_3:+24700492 Msa1283170:three_prime_UTR
TTGAGAAGAAGAAATTAAAT+TGG 0.244876 8_3:-24700401 None:intergenic
GTTCTTTGGGCTTGTGCTAT+TGG 0.281471 8_3:+24699735 Msa1283170:CDS
AGTGGTCTATGAGAGTTCTT+TGG 0.313525 8_3:+24699721 Msa1283170:CDS
TTCGCAAGGATTTATGTTAC+TGG 0.329191 8_3:-24697226 None:intergenic
TGGGGTATAAGCCGGAAAAC+AGG 0.346498 8_3:+24697182 None:intergenic
AGGCTTGAAAGGAATGGATT+TGG 0.349048 8_3:+24700159 Msa1283170:CDS
GTGATTGCTACCTCCTTTGT+AGG 0.349340 8_3:+24700444 Msa1283170:three_prime_UTR
ATCCATTCCTTTCAAGCCTT+CGG 0.357129 8_3:-24700155 None:intergenic
TCATTTCAGATTAAAGTTGC+TGG 0.384437 8_3:+24699655 Msa1283170:intron
GATTCAACAGATACAGATTT+CGG 0.391308 8_3:-24697272 None:intergenic
TAGAAAGACAAAAGCAGAAT+AGG 0.394330 8_3:+24700119 Msa1283170:CDS
GTGGTCTATGAGAGTTCTTT+GGG 0.402171 8_3:+24699722 Msa1283170:CDS
TGAGAAGAAGAAATTAAATT+GGG 0.408950 8_3:-24700400 None:intergenic
TACCTGTCTAGGTCTGTATA+TGG 0.414586 8_3:+24700090 Msa1283170:intron
ACATAAGAGTCTTTCTAAAA+GGG 0.447283 8_3:+24700322 Msa1283170:three_prime_UTR
TTCTAAAAGGGTTTACTGAA+AGG 0.464856 8_3:+24700334 Msa1283170:three_prime_UTR
GTTCCCATGGCATGCAGTAA+AGG 0.478755 8_3:-24699678 None:intergenic
CTGGCCTTTACTGCATGCCA+TGG 0.491901 8_3:+24699674 Msa1283170:exon
CTTGTCCGTAATTACTCCTC+TGG 0.492027 8_3:-24699700 None:intergenic
CTCAGCAAGGATCTTACAAA+TGG 0.506225 8_3:-24700371 None:intergenic
GGGAACCAGAGGAGTAATTA+CGG 0.516023 8_3:+24699695 Msa1283170:CDS
CTTGAAAGGAATGGATTTGG+AGG 0.518401 8_3:+24700162 Msa1283170:CDS
GGGGTATAAGCCGGAAAACA+GGG 0.520710 8_3:+24697183 None:intergenic
AGCAAAGTTGTGGTATTGAA+AGG 0.534487 8_3:+24697299 Msa1283170:five_prime_UTR
AAAGGAATGGATTTGGAGGA+AGG 0.535893 8_3:+24700166 Msa1283170:CDS
GGCCGAAGGCTTGAAAGGAA+TGG 0.548731 8_3:+24700153 Msa1283170:CDS
TGGCCTTTACTGCATGCCAT+GGG 0.552122 8_3:+24699675 Msa1283170:exon
TACTCATTCAACTCCTACAA+AGG 0.554518 8_3:-24700457 None:intergenic
ATGTTGGCCGAAGGCTTGAA+AGG 0.560678 8_3:+24700148 Msa1283170:CDS
GCAGAATAGGCAGAGGATGT+TGG 0.565240 8_3:+24700132 Msa1283170:CDS
ATGGATTTGGAGGAAGGCAA+TGG 0.569370 8_3:+24700172 Msa1283170:CDS
ATTTGTAAGATCCTTGCTGA+GGG 0.580460 8_3:+24700373 Msa1283170:three_prime_UTR
AATTACTCCTCTGGTTCCCA+TGG 0.583145 8_3:-24699691 None:intergenic
GACAAAAGCAGAATAGGCAG+AGG 0.586343 8_3:+24700125 Msa1283170:CDS
AGATTTCGGTACACAACGCA+AGG 0.596019 8_3:-24697258 None:intergenic
CTGCATGCCATGGGAACCAG+AGG 0.620238 8_3:+24699684 Msa1283170:exon
TGAATCAGTAAGCAAAGTTG+TGG 0.626581 8_3:+24697289 Msa1283170:five_prime_UTR
GTTGTGGTATTGAAAGGACA+AGG 0.629577 8_3:+24697305 Msa1283170:five_prime_UTR
GGGTATAAGCCGGAAAACAG+GGG 0.631877 8_3:+24697184 None:intergenic
GAGGAGTAATTACGGACAAG+TGG 0.636089 8_3:+24699703 Msa1283170:CDS
CATTTGTAAGATCCTTGCTG+AGG 0.642258 8_3:+24700372 Msa1283170:three_prime_UTR
AGGCAGAGGATGTTGGCCGA+AGG 0.646645 8_3:+24700139 Msa1283170:CDS
AATTGGGAAATCCCTCAGCA+AGG 0.651410 8_3:-24700384 None:intergenic
TCATTCAACTCCTACAAAGG+AGG 0.662922 8_3:-24700454 None:intergenic
ATTGAAAGGACAAGGTTCCG+AGG 0.668650 8_3:+24697313 Msa1283170:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTGTTAATTAAATGATTT+TGG + chr8_3:24697474-24697493 Msa1283170:intron 15.0%
!!! TCGTTGATTTAAATTATTAT+TGG + chr8_3:24697669-24697688 Msa1283170:intron 15.0%
!! AAAAAAAAGAATATTCTCAA+AGG - chr8_3:24699470-24699489 None:intergenic 15.0%
!!! TCATTTCATTGATTTTGAAT+TGG + chr8_3:24697357-24697376 Msa1283170:intron 20.0%
!!! CATTTCATTGATTTTGAATT+GGG + chr8_3:24697358-24697377 Msa1283170:intron 20.0%
!! TTAATTAACAATGCTTACTT+AGG - chr8_3:24697467-24697486 None:intergenic 20.0%
!! ATTTGTAATTAGTAAAGATG+AGG + chr8_3:24697546-24697565 Msa1283170:intron 20.0%
!! TGAAAAATGGAAAAGTAAAT+GGG - chr8_3:24698311-24698330 None:intergenic 20.0%
!!! ATTTACTTTTCCATTTTTCA+CGG + chr8_3:24698311-24698330 Msa1283170:intron 20.0%
!!! ATACATTTCCCTTATTTATA+GGG - chr8_3:24698615-24698634 None:intergenic 20.0%
!! AAATGTAGCTTCTTAAAAAT+AGG + chr8_3:24698803-24698822 Msa1283170:intron 20.0%
!! AATGTAGCTTCTTAAAAATA+GGG + chr8_3:24698804-24698823 Msa1283170:intron 20.0%
!!! ATTCTTTATTTTACAGCAAT+AGG - chr8_3:24699493-24699512 None:intergenic 20.0%
!! ATTCTTTCTTACTCAAATAA+AGG + chr8_3:24699591-24699610 Msa1283170:intron 20.0%
!!! TACATTTAAGTTTGTTAACA+AGG - chr8_3:24699817-24699836 None:intergenic 20.0%
!! TGAGAAGAAGAAATTAAATT+GGG - chr8_3:24700403-24700422 None:intergenic 20.0%
!! TTGAGAAGAAGAAATTAAAT+TGG - chr8_3:24700404-24700423 None:intergenic 20.0%
!! TGTTAAAATTGTATACTTTC+AGG + chr8_3:24700492-24700511 Msa1283170:three_prime_UTR 20.0%
!!! GCTAACATTGTTATTTTTTT+AGG + chr8_3:24700549-24700568 Msa1283170:three_prime_UTR 20.0%
!!! ATAGAAAAGAAAAAGTACCT+CGG - chr8_3:24697333-24697352 None:intergenic 25.0%
!!! TTGAGTAGTTTGTACAATTT+TGG + chr8_3:24697801-24697820 Msa1283170:intron 25.0%
! AAAATTCAACAAGCTACTAA+AGG + chr8_3:24698198-24698217 Msa1283170:intron 25.0%
! TAAATAAGACAGAGGAAAAA+TGG - chr8_3:24698273-24698292 None:intergenic 25.0%
! GTGAAAAATGGAAAAGTAAA+TGG - chr8_3:24698312-24698331 None:intergenic 25.0%
! AAGAATATATATGGGTGAAT+GGG - chr8_3:24698379-24698398 None:intergenic 25.0%
! ATTCACCCATATATATTCTT+GGG + chr8_3:24698379-24698398 Msa1283170:intron 25.0%
!!! GGTGTTATCTTTTTGTTTTT+GGG + chr8_3:24698401-24698420 Msa1283170:intron 25.0%
! TTAACAAGACCCTATAAATA+AGG + chr8_3:24698603-24698622 Msa1283170:intron 25.0%
! TAACAAGACCCTATAAATAA+GGG + chr8_3:24698604-24698623 Msa1283170:intron 25.0%
!! GATACATTTCCCTTATTTAT+AGG - chr8_3:24698616-24698635 None:intergenic 25.0%
!!! TTATGTCACTATTGTTTCTA+TGG + chr8_3:24698751-24698770 Msa1283170:intron 25.0%
! CTATGTAACAGTTTATAGTA+GGG + chr8_3:24698882-24698901 Msa1283170:intron 25.0%
! ATCTATTTAGTGTCAACTAT+TGG + chr8_3:24698995-24699014 Msa1283170:intron 25.0%
! ACAAGAAAAATGAAAGATTC+AGG + chr8_3:24699095-24699114 Msa1283170:intron 25.0%
! CAAGAAAAATGAAAGATTCA+GGG + chr8_3:24699096-24699115 Msa1283170:intron 25.0%
! AGTATTCAGAGACTATATTT+AGG - chr8_3:24699138-24699157 None:intergenic 25.0%
!!! AATTGTTTGATTTGAACTGA+TGG + chr8_3:24699188-24699207 Msa1283170:intron 25.0%
! CTCAATAGTTCAACAAATTA+TGG + chr8_3:24699219-24699238 Msa1283170:intron 25.0%
! ATAGTTCAACAAATTATGGT+TGG + chr8_3:24699223-24699242 Msa1283170:intron 25.0%
! AGGATATAGAATTTGAATGA+AGG + chr8_3:24699270-24699289 Msa1283170:intron 25.0%
!! GTTAAGTTCTGTAGATATTT+TGG + chr8_3:24699338-24699357 Msa1283170:intron 25.0%
!!! TTTTTTAAATAGCCCTCAAT+TGG + chr8_3:24699374-24699393 Msa1283170:intron 25.0%
! GTTTATATACAACAAGTGTT+AGG - chr8_3:24699619-24699638 None:intergenic 25.0%
!! CAACTTTAATCTGAAATGAA+CGG - chr8_3:24699654-24699673 None:intergenic 25.0%
! AAGAAGGTTCCATTAATAAA+GGG - chr8_3:24699786-24699805 None:intergenic 25.0%
! AAAGAAGGTTCCATTAATAA+AGG - chr8_3:24699787-24699806 None:intergenic 25.0%
!! TGTTTTACGATACGTTATTT+AGG + chr8_3:24699974-24699993 Msa1283170:intron 25.0%
!! GTTTTACGATACGTTATTTA+GGG + chr8_3:24699975-24699994 Msa1283170:intron 25.0%
!! GGTAAACTATTTTCAAATAG+CGG + chr8_3:24699996-24700015 Msa1283170:intron 25.0%
!!! CAACAGATTTGATGTTTTAA+TGG - chr8_3:24700302-24700321 None:intergenic 25.0%
!! ACATAAGAGTCTTTCTAAAA+GGG + chr8_3:24700322-24700341 Msa1283170:three_prime_UTR 25.0%
!!! TTTTTCTCCTCTTTTTGAAA+CGG + chr8_3:24700522-24700541 Msa1283170:three_prime_UTR 25.0%
GATTCAACAGATACAGATTT+CGG - chr8_3:24697275-24697294 None:intergenic 30.0%
TAGAAGAAAACATATACCGA+TGG + chr8_3:24697846-24697865 Msa1283170:intron 30.0%
!! AAGTTGATAACCGTGAAAAA+TGG - chr8_3:24698324-24698343 None:intergenic 30.0%
CAAGAATATATATGGGTGAA+TGG - chr8_3:24698380-24698399 None:intergenic 30.0%
CATTCACCCATATATATTCT+TGG + chr8_3:24698378-24698397 Msa1283170:intron 30.0%
TTCACCCATATATATTCTTG+GGG + chr8_3:24698380-24698399 Msa1283170:intron 30.0%
AACACCCCAAGAATATATAT+GGG - chr8_3:24698387-24698406 None:intergenic 30.0%
TAACACCCCAAGAATATATA+TGG - chr8_3:24698388-24698407 None:intergenic 30.0%
!!! GGGTGTTATCTTTTTGTTTT+TGG + chr8_3:24698400-24698419 Msa1283170:intron 30.0%
!!! GTTATCTTTTTGTTTTTGGG+TGG + chr8_3:24698404-24698423 Msa1283170:intron 30.0%
!!! TGTTTTTGGGTGGTTTTTAA+AGG + chr8_3:24698414-24698433 Msa1283170:intron 30.0%
!!! GTTTTTGGGTGGTTTTTAAA+GGG + chr8_3:24698415-24698434 Msa1283170:intron 30.0%
AAATACAAAGAAGGGGAAAT+CGG - chr8_3:24698471-24698490 None:intergenic 30.0%
TGGGAAAAAATACAAAGAAG+GGG - chr8_3:24698478-24698497 None:intergenic 30.0%
GTGGGAAAAAATACAAAGAA+GGG - chr8_3:24698479-24698498 None:intergenic 30.0%
GCAAAAGATAAACCAAACAT+AGG + chr8_3:24698859-24698878 Msa1283170:intron 30.0%
GCTATGTAACAGTTTATAGT+AGG + chr8_3:24698881-24698900 Msa1283170:intron 30.0%
AAAAATGAAAGATTCAGGGA+TGG + chr8_3:24699100-24699119 Msa1283170:intron 30.0%
TATAGTCTCTGAATACTTAC+TGG + chr8_3:24699141-24699160 Msa1283170:intron 30.0%
! AAATTATGGTTGGTTCTCTT+TGG + chr8_3:24699233-24699252 Msa1283170:intron 30.0%
AGGATTATAGAGTAGTTAAG+AGG + chr8_3:24699290-24699309 Msa1283170:intron 30.0%
ACTGATTAATCCAATGTGAA+AGG + chr8_3:24699436-24699455 Msa1283170:intron 30.0%
TCATTTCAGATTAAAGTTGC+TGG + chr8_3:24699655-24699674 Msa1283170:intron 30.0%
CATTCTAGACCCTTTATTAA+TGG + chr8_3:24699774-24699793 Msa1283170:intron 30.0%
TAACAGCTATCTAACAACAT+CGG - chr8_3:24699924-24699943 None:intergenic 30.0%
TAGAAAGACAAAAGCAGAAT+AGG + chr8_3:24700119-24700138 Msa1283170:CDS 30.0%
GACATAAGAGTCTTTCTAAA+AGG + chr8_3:24700321-24700340 Msa1283170:three_prime_UTR 30.0%
! TTCTAAAAGGGTTTACTGAA+AGG + chr8_3:24700334-24700353 Msa1283170:three_prime_UTR 30.0%
TTCGCAAGGATTTATGTTAC+TGG - chr8_3:24697229-24697248 None:intergenic 35.0%
TGAATCAGTAAGCAAAGTTG+TGG + chr8_3:24697289-24697308 Msa1283170:five_prime_UTR 35.0%
! AGCAAAGTTGTGGTATTGAA+AGG + chr8_3:24697299-24697318 Msa1283170:five_prime_UTR 35.0%
ATGACCTTGTAATTGTGTAC+TGG + chr8_3:24697762-24697781 Msa1283170:intron 35.0%
AAGACCAGTACACAATTACA+AGG - chr8_3:24697769-24697788 None:intergenic 35.0%
!! TAATTGTGTACTGGTCTTAG+AGG + chr8_3:24697771-24697790 Msa1283170:intron 35.0%
AATAGTAGCTATAACACCAC+TGG + chr8_3:24698035-24698054 Msa1283170:intron 35.0%
GTTATGCTCTATTCTCAAAG+CGG - chr8_3:24698131-24698150 None:intergenic 35.0%
! TTCTCTAAGCTTGTTTACAC+TGG - chr8_3:24698224-24698243 None:intergenic 35.0%
TGTAAACAAGCTTAGAGAAC+AGG + chr8_3:24698225-24698244 Msa1283170:intron 35.0%
GAAAAGTAAATGGGAGAAGA+GGG - chr8_3:24698302-24698321 None:intergenic 35.0%
GGTGGGAAAAAATACAAAGA+AGG - chr8_3:24698480-24698499 None:intergenic 35.0%
AGTTGAGTCTTAGAAGAGAT+AGG + chr8_3:24698690-24698709 Msa1283170:intron 35.0%
AATATGTGAGAAAGCCAATG+CGG - chr8_3:24698733-24698752 None:intergenic 35.0%
!! TGTCACTATTGTTTCTATGG+TGG + chr8_3:24698754-24698773 Msa1283170:intron 35.0%
AAATAGGGTCAAATGTGCAT+TGG + chr8_3:24698819-24698838 Msa1283170:intron 35.0%
AATAGGGTCAAATGTGCATT+GGG + chr8_3:24698820-24698839 Msa1283170:intron 35.0%
ACTGTTACATAGCCTATGTT+TGG - chr8_3:24698874-24698893 None:intergenic 35.0%
CCACAACTCCTATAATAACA+CGG - chr8_3:24698935-24698954 None:intergenic 35.0%
GTTGTTAATGCCCTATATTC+TGG + chr8_3:24699017-24699036 Msa1283170:intron 35.0%
ATTGCCATGAAACTACAGAT+GGG + chr8_3:24699067-24699086 Msa1283170:intron 35.0%
!! TAGAGTAGTTAAGAGGTGTT+AGG + chr8_3:24699297-24699316 Msa1283170:intron 35.0%
!! AGAGTAGTTAAGAGGTGTTA+GGG + chr8_3:24699298-24699317 Msa1283170:intron 35.0%
!! GGGATAGCTTTGAATAATTG+AGG + chr8_3:24699407-24699426 Msa1283170:intron 35.0%
!! AAGTTTGTTAACAAGGCTTC+AGG - chr8_3:24699810-24699829 None:intergenic 35.0%
!!! ACTATAGCACTTTTTCGTAG+TGG + chr8_3:24700029-24700048 Msa1283170:intron 35.0%
ATTTGTAAGATCCTTGCTGA+GGG + chr8_3:24700373-24700392 Msa1283170:three_prime_UTR 35.0%
TACTCATTCAACTCCTACAA+AGG - chr8_3:24700460-24700479 None:intergenic 35.0%
AGCATAACCGTTTCAAAAAG+AGG - chr8_3:24700532-24700551 None:intergenic 35.0%
! TACACAACGCAAGGTTTTAC+TGG - chr8_3:24697252-24697271 None:intergenic 40.0%
! GTTGTGGTATTGAAAGGACA+AGG + chr8_3:24697305-24697324 Msa1283170:five_prime_UTR 40.0%
GTCGTGTTTGATGTTTGTGT+CGG + chr8_3:24697707-24697726 Msa1283170:intron 40.0%
GTGCTTCATAGACTTAGTAG+AGG + chr8_3:24697729-24697748 Msa1283170:intron 40.0%
CAAACTAGTGAGAACACCAT+CGG - chr8_3:24697865-24697884 None:intergenic 40.0%
! ATGGTGTTCTCACTAGTTTG+TGG + chr8_3:24697865-24697884 Msa1283170:intron 40.0%
! AGCAGCTTTTTGACAACACA+GGG - chr8_3:24697926-24697945 None:intergenic 40.0%
! TAGCAGCTTTTTGACAACAC+AGG - chr8_3:24697927-24697946 None:intergenic 40.0%
GATCCTCAATTGACAACACT+AGG + chr8_3:24698092-24698111 Msa1283170:intron 40.0%
GGCTCAACTAAATAAGACAG+AGG - chr8_3:24698281-24698300 None:intergenic 40.0%
GGAAAAGTAAATGGGAGAAG+AGG - chr8_3:24698303-24698322 None:intergenic 40.0%
! TAAAGGGTTTTTGTTCGAGC+CGG + chr8_3:24698431-24698450 Msa1283170:intron 40.0%
CAAGACGCACTAATAAGCTT+GGG - chr8_3:24698501-24698520 None:intergenic 40.0%
ATATGTGAGAAAGCCAATGC+GGG - chr8_3:24698732-24698751 None:intergenic 40.0%
! TGTGCATTGGGAAGCAATTT+TGG + chr8_3:24698832-24698851 Msa1283170:intron 40.0%
CTGCAATATGCATTGTAGCA+AGG + chr8_3:24698909-24698928 Msa1283170:intron 40.0%
! TAGCAAGGCCGTGTTATTAT+AGG + chr8_3:24698924-24698943 Msa1283170:intron 40.0%
! CCGTGTTATTATAGGAGTTG+TGG + chr8_3:24698932-24698951 Msa1283170:intron 40.0%
TTAATGCCCTATATTCTGGC+TGG + chr8_3:24699021-24699040 Msa1283170:intron 40.0%
ATCTCACCAGCCAGAATATA+GGG - chr8_3:24699030-24699049 None:intergenic 40.0%
TATCTCACCAGCCAGAATAT+AGG - chr8_3:24699031-24699050 None:intergenic 40.0%
GATTGCCATGAAACTACAGA+TGG + chr8_3:24699066-24699085 Msa1283170:intron 40.0%
CATGAAACTACAGATGGGAT+GGG + chr8_3:24699072-24699091 Msa1283170:intron 40.0%
TGAAAGATTCAGGGATGGAT+TGG + chr8_3:24699105-24699124 Msa1283170:intron 40.0%
!! CTTTGGCTAAGCTTGTTGTT+AGG + chr8_3:24699250-24699269 Msa1283170:intron 40.0%
AGGTGTTAGGGAAGTTAGTT+AGG + chr8_3:24699310-24699329 Msa1283170:intron 40.0%
TGTTAGGGAAGTTAGTTAGG+TGG + chr8_3:24699313-24699332 Msa1283170:intron 40.0%
AAATAGCCCTCAATTGGTAG+AGG + chr8_3:24699380-24699399 Msa1283170:intron 40.0%
AGTGGTCTATGAGAGTTCTT+TGG + chr8_3:24699721-24699740 Msa1283170:CDS 40.0%
GTGGTCTATGAGAGTTCTTT+GGG + chr8_3:24699722-24699741 Msa1283170:CDS 40.0%
TAACAAGGCTTCAGGAAAGA+AGG - chr8_3:24699802-24699821 None:intergenic 40.0%
AGATAGCTGTTATAGCGTAG+TGG + chr8_3:24699932-24699951 Msa1283170:intron 40.0%
ACACTGTACTATACCTGTCT+AGG + chr8_3:24700079-24700098 Msa1283170:intron 40.0%
TACCTGTCTAGGTCTGTATA+TGG + chr8_3:24700090-24700109 Msa1283170:intron 40.0%
AACCATATACAGACCTAGAC+AGG - chr8_3:24700095-24700114 None:intergenic 40.0%
ATCCATTCCTTTCAAGCCTT+CGG - chr8_3:24700158-24700177 None:intergenic 40.0%
! AGGCTTGAAAGGAATGGATT+TGG + chr8_3:24700159-24700178 Msa1283170:CDS 40.0%
! CTTGAAAGGAATGGATTTGG+AGG + chr8_3:24700162-24700181 Msa1283170:CDS 40.0%
! AAAGGAATGGATTTGGAGGA+AGG + chr8_3:24700166-24700185 Msa1283170:CDS 40.0%
CTCAGCAAGGATCTTACAAA+TGG - chr8_3:24700374-24700393 None:intergenic 40.0%
CATTTGTAAGATCCTTGCTG+AGG + chr8_3:24700372-24700391 Msa1283170:three_prime_UTR 40.0%
TCATTCAACTCCTACAAAGG+AGG - chr8_3:24700457-24700476 None:intergenic 40.0%
!!! CAAGGTTTTACTGGTTCGCA+AGG - chr8_3:24697243-24697262 None:intergenic 45.0%
AGATTTCGGTACACAACGCA+AGG - chr8_3:24697261-24697280 None:intergenic 45.0%
ATTGAAAGGACAAGGTTCCG+AGG + chr8_3:24697313-24697332 Msa1283170:five_prime_UTR 45.0%
AGTCAGAGACCTCTGTAACA+CGG + chr8_3:24697589-24697608 Msa1283170:intron 45.0%
TTGTGGCAACAGTCACACAT+AGG + chr8_3:24697882-24697901 Msa1283170:intron 45.0%
GCAACAGTCACACATAGGAA+GGG + chr8_3:24697887-24697906 Msa1283170:intron 45.0%
! AGCTTTTTGACAACACAGGG+TGG - chr8_3:24697923-24697942 None:intergenic 45.0%
CGTGTATTGCAGAACAAGAG+CGG - chr8_3:24697992-24698011 None:intergenic 45.0%
GGACCTAGTGTTGTCAATTG+AGG - chr8_3:24698098-24698117 None:intergenic 45.0%
! GTGGAATGACATGGGTTAAG+TGG - chr8_3:24698351-24698370 None:intergenic 45.0%
ATCGGTTGCCTTACAAACTC+CGG - chr8_3:24698453-24698472 None:intergenic 45.0%
ACGCACTAATAAGCTTGGGT+GGG - chr8_3:24698497-24698516 None:intergenic 45.0%
GCAAGACGCACTAATAAGCT+TGG - chr8_3:24698502-24698521 None:intergenic 45.0%
GCTTATTAGTGCGTCTTGCA+CGG + chr8_3:24698503-24698522 Msa1283170:intron 45.0%
CTTATTAGTGCGTCTTGCAC+GGG + chr8_3:24698504-24698523 Msa1283170:intron 45.0%
TCTTGTTAACGAGTGCTCCT+GGG - chr8_3:24698592-24698611 None:intergenic 45.0%
CACAGATGCGACATGAGTAT+TGG - chr8_3:24698653-24698672 None:intergenic 45.0%
AAAGTCAATTGTGCCCGCAT+TGG + chr8_3:24698716-24698735 Msa1283170:intron 45.0%
!! CCTAGCTTCCATTTTGACGT+GGG - chr8_3:24698783-24698802 None:intergenic 45.0%
!! TCCTAGCTTCCATTTTGACG+TGG - chr8_3:24698784-24698803 None:intergenic 45.0%
TAGGAGTTGTGGTTGCTTGA+AGG + chr8_3:24698943-24698962 Msa1283170:intron 45.0%
CCATCCCATCTGTAGTTTCA+TGG - chr8_3:24699074-24699093 None:intergenic 45.0%
CCATGAAACTACAGATGGGA+TGG + chr8_3:24699071-24699090 Msa1283170:intron 45.0%
CCTTCTCCTCTACCAATTGA+GGG - chr8_3:24699389-24699408 None:intergenic 45.0%
CCTCAATTGGTAGAGGAGAA+GGG + chr8_3:24699387-24699406 Msa1283170:intron 45.0%
GGAGAACTCTCCTTTCACAT+TGG - chr8_3:24699449-24699468 None:intergenic 45.0%
! AATTACTCCTCTGGTTCCCA+TGG - chr8_3:24699694-24699713 None:intergenic 45.0%
GGGAACCAGAGGAGTAATTA+CGG + chr8_3:24699695-24699714 Msa1283170:CDS 45.0%
CTTGTCCGTAATTACTCCTC+TGG - chr8_3:24699703-24699722 None:intergenic 45.0%
GAGGAGTAATTACGGACAAG+TGG + chr8_3:24699703-24699722 Msa1283170:CDS 45.0%
GTTCTTTGGGCTTGTGCTAT+TGG + chr8_3:24699735-24699754 Msa1283170:CDS 45.0%
GACAAAAGCAGAATAGGCAG+AGG + chr8_3:24700125-24700144 Msa1283170:CDS 45.0%
ATGGATTTGGAGGAAGGCAA+TGG + chr8_3:24700172-24700191 Msa1283170:CDS 45.0%
AATTGGGAAATCCCTCAGCA+AGG - chr8_3:24700387-24700406 None:intergenic 45.0%
GTGATTGCTACCTCCTTTGT+AGG + chr8_3:24700444-24700463 Msa1283170:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTTTTGAAA+TGG - chr8_3:24698552-24698571 None:intergenic 5.0%
!! CAGAAGTGTCCGTGTTACAG+AGG - chr8_3:24697601-24697620 None:intergenic 50.0%
CTCTGTAACACGGACACTTC+TGG + chr8_3:24697599-24697618 Msa1283170:intron 50.0%
CTTCTGGTGAAAGACGTGTC+TGG + chr8_3:24697615-24697634 Msa1283170:intron 50.0%
GGCAACAGTCACACATAGGA+AGG + chr8_3:24697886-24697905 Msa1283170:intron 50.0%
GCTATAACACCACTGGAGCT+TGG + chr8_3:24698042-24698061 Msa1283170:intron 50.0%
ATAACACCACTGGAGCTTGG+CGG + chr8_3:24698045-24698064 Msa1283170:intron 50.0%
TGACAACACTAGGTCCACCA+CGG + chr8_3:24698102-24698121 Msa1283170:intron 50.0%
TATTCTCAAAGCGGTGACCG+TGG - chr8_3:24698122-24698141 None:intergenic 50.0%
GGGTTGCAGTGGAATGACAT+GGG - chr8_3:24698359-24698378 None:intergenic 50.0%
TGGGTTGCAGTGGAATGACA+TGG - chr8_3:24698360-24698379 None:intergenic 50.0%
!! TATGGGTGAATGGGTTGCAG+TGG - chr8_3:24698370-24698389 None:intergenic 50.0%
TGTTCGAGCCGGAGTTTGTA+AGG + chr8_3:24698442-24698461 Msa1283170:intron 50.0%
GACGCACTAATAAGCTTGGG+TGG - chr8_3:24698498-24698517 None:intergenic 50.0%
!! GAATGCTTAAAGAGTGCCCC+AGG + chr8_3:24698572-24698591 Msa1283170:intron 50.0%
CTTGTTAACGAGTGCTCCTG+GGG - chr8_3:24698591-24698610 None:intergenic 50.0%
! GTCTTGTTAACGAGTGCTCC+TGG - chr8_3:24698593-24698612 None:intergenic 50.0%
GGTGGATACCCACGTCAAAA+TGG + chr8_3:24698772-24698791 Msa1283170:intron 50.0%
CCCACGTCAAAATGGAAGCT+AGG + chr8_3:24698780-24698799 Msa1283170:intron 50.0%
GTTGCTTGAAGGAGACGTGT+GGG + chr8_3:24698954-24698973 Msa1283170:intron 50.0%
CCCTCAATTGGTAGAGGAGA+AGG + chr8_3:24699386-24699405 Msa1283170:intron 50.0%
CCCTTCTCCTCTACCAATTG+AGG - chr8_3:24699390-24699409 None:intergenic 50.0%
TGGCCTTTACTGCATGCCAT+GGG + chr8_3:24699675-24699694 Msa1283170:exon 50.0%
GTTCCCATGGCATGCAGTAA+AGG - chr8_3:24699681-24699700 None:intergenic 50.0%
GCAGAATAGGCAGAGGATGT+TGG + chr8_3:24700132-24700151 Msa1283170:CDS 50.0%
ATGTTGGCCGAAGGCTTGAA+AGG + chr8_3:24700148-24700167 Msa1283170:CDS 50.0%
CACACATAGGAAGGGACTGC+TGG + chr8_3:24697895-24697914 Msa1283170:intron 55.0%
GGTTGCTTGAAGGAGACGTG+TGG + chr8_3:24698953-24698972 Msa1283170:intron 55.0%
! CTGGCCTTTACTGCATGCCA+TGG + chr8_3:24699674-24699693 Msa1283170:exon 55.0%
GGCCGAAGGCTTGAAAGGAA+TGG + chr8_3:24700153-24700172 Msa1283170:CDS 55.0%
CAAACTCCGCCAAGCTCCAG+TGG - chr8_3:24698054-24698073 None:intergenic 60.0%
TCTCAAAGCGGTGACCGTGG+TGG - chr8_3:24698119-24698138 None:intergenic 60.0%
TGCGTCTTGCACGGGCTTGT+CGG + chr8_3:24698512-24698531 Msa1283170:intron 60.0%
CTGCATGCCATGGGAACCAG+AGG + chr8_3:24699684-24699703 Msa1283170:exon 60.0%
AGGCAGAGGATGTTGGCCGA+AGG + chr8_3:24700139-24700158 Msa1283170:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 24697194 24700572 24697194 ID=Msa1283170;Name=Msa1283170
chr8_3 mRNA 24697194 24700572 24697194 ID=Msa1283170-mRNA-1;Parent=Msa1283170;Name=Msa1283170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=170|1|1|1|0.5|0.33|3|365|60
chr8_3 exon 24697194 24697334 24697194 ID=Msa1283170-mRNA-1:exon:8676;Parent=Msa1283170-mRNA-1
chr8_3 exon 24699664 24699768 24699664 ID=Msa1283170-mRNA-1:exon:8677;Parent=Msa1283170-mRNA-1
chr8_3 exon 24700101 24700572 24700101 ID=Msa1283170-mRNA-1:exon:8678;Parent=Msa1283170-mRNA-1
chr8_3 five_prime_UTR 24697194 24697334 24697194 ID=Msa1283170-mRNA-1:five_prime_utr;Parent=Msa1283170-mRNA-1
chr8_3 five_prime_UTR 24699664 24699692 24699664 ID=Msa1283170-mRNA-1:five_prime_utr;Parent=Msa1283170-mRNA-1
chr8_3 CDS 24699693 24699768 24699693 ID=Msa1283170-mRNA-1:cds;Parent=Msa1283170-mRNA-1
chr8_3 CDS 24700101 24700207 24700101 ID=Msa1283170-mRNA-1:cds;Parent=Msa1283170-mRNA-1
chr8_3 three_prime_UTR 24700208 24700572 24700208 ID=Msa1283170-mRNA-1:three_prime_utr;Parent=Msa1283170-mRNA-1
Gene Sequence

>Msa1283170

ATGGGAACCAGAGGAGTAATTACGGACAAGTGGTCTATGAGAGTTCTTTGGGCTTGTGCTATTGGAAGTGCTGTTAGTCTGTATATGGTTGCTGTAGAAAGACAAAAGCAGAATAGGCAGAGGATGTTGGCCGAAGGCTTGAAAGGAATGGATTTGGAGGAAGGCAATGGTGAAAATGTTTGA

Protein sequence

>Msa1283170

MGTRGVITDKWSMRVLWACAIGSAVSLYMVAVERQKQNRQRMLAEGLKGMDLEEGNGENV*