Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0784200 | ACJ83352.1 | 90.099 | 101 | 7 | 1 | 1 | 98 | 106 | 206 | 2.12e-59 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0784200 | sp|P54873|HMCS_ARATH | 86.139 | 101 | 11 | 1 | 1 | 98 | 102 | 202 | 2.35e-59 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0784200 | B7FFG2 | 90.099 | 101 | 7 | 1 | 1 | 98 | 106 | 206 | 1.01e-59 | 192 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0784200 | 0.821353 | 4.223625e-53 | -8.615850e-47 |
| Msa0014990 | Msa0784200 | 0.806085 | 9.763119e-50 | -8.615850e-47 |
| Msa0017770 | Msa0784200 | -0.811725 | 6.065141e-51 | -8.615850e-47 |
| Msa0026130 | Msa0784200 | 0.824106 | 9.658986e-54 | -8.615850e-47 |
| Msa0027260 | Msa0784200 | 0.845034 | 5.224348e-59 | -8.615850e-47 |
| Msa0032260 | Msa0784200 | 0.805074 | 1.591159e-49 | -8.615850e-47 |
| Msa0055190 | Msa0784200 | 0.801303 | 9.594493e-49 | -8.615850e-47 |
| Msa0056430 | Msa0784200 | 0.826025 | 3.402545e-54 | -8.615850e-47 |
| Msa0056470 | Msa0784200 | 0.860844 | 1.556241e-63 | -8.615850e-47 |
| Msa0064350 | Msa0784200 | 0.808282 | 3.343745e-50 | -8.615850e-47 |
| Msa0064380 | Msa0784200 | 0.804228 | 2.389378e-49 | -8.615850e-47 |
| Msa0076040 | Msa0784200 | 0.823432 | 1.389310e-53 | -8.615850e-47 |
| Msa0082280 | Msa0784200 | 0.822383 | 2.439746e-53 | -8.615850e-47 |
| Msa0086750 | Msa0784200 | 0.800550 | 1.367744e-48 | -8.615850e-47 |
| Msa0094470 | Msa0784200 | 0.801255 | 9.816764e-49 | -8.615850e-47 |
| Msa0112790 | Msa0784200 | 0.805543 | 1.268583e-49 | -8.615850e-47 |
| Msa0114870 | Msa0784200 | 0.812373 | 4.379781e-51 | -8.615850e-47 |
| Msa0621950 | Msa0784200 | 0.803031 | 4.231737e-49 | -8.615850e-47 |
| Msa0651050 | Msa0784200 | 0.814951 | 1.185734e-51 | -8.615850e-47 |
| Msa0661300 | Msa0784200 | 0.837764 | 4.288597e-57 | -8.615850e-47 |
| Msa0662500 | Msa0784200 | 0.814263 | 1.684083e-51 | -8.615850e-47 |
| Msa0685460 | Msa0784200 | 0.830986 | 2.156385e-55 | -8.615850e-47 |
| Msa0687630 | Msa0784200 | 0.802199 | 6.282063e-49 | -8.615850e-47 |
| Msa0689230 | Msa0784200 | 0.839080 | 1.962680e-57 | -8.615850e-47 |
| Msa0690150 | Msa0784200 | 0.830209 | 3.341218e-55 | -8.615850e-47 |
| Msa0692840 | Msa0784200 | 0.861892 | 7.453372e-64 | -8.615850e-47 |
| Msa0692940 | Msa0784200 | 0.820892 | 5.393809e-53 | -8.615850e-47 |
| Msa0709500 | Msa0784200 | 0.803741 | 3.016345e-49 | -8.615850e-47 |
| Msa0719510 | Msa0784200 | 0.813876 | 2.050237e-51 | -8.615850e-47 |
| Msa0749760 | Msa0784200 | 0.820419 | 6.929315e-53 | -8.615850e-47 |
| Msa0750880 | Msa0784200 | 0.829288 | 5.598552e-55 | -8.615850e-47 |
| Msa0756260 | Msa0784200 | 0.825681 | 4.104677e-54 | -8.615850e-47 |
| Msa0761940 | Msa0784200 | 0.806745 | 7.084439e-50 | -8.615850e-47 |
| Msa0763020 | Msa0784200 | 0.813886 | 2.039515e-51 | -8.615850e-47 |
| Msa0763070 | Msa0784200 | 0.822594 | 2.179013e-53 | -8.615850e-47 |
| Msa0784200 | Msa0818310 | 0.987738 | 2.364369e-171 | -8.615850e-47 |
| Msa0784200 | Msa0830090 | 0.831329 | 1.775209e-55 | -8.615850e-47 |
| Msa0784200 | Msa0858770 | 0.995492 | 8.221200e-217 | -8.615850e-47 |
| Msa0784200 | Msa0881290 | 0.841382 | 4.914737e-58 | -8.615850e-47 |
| Msa0784200 | Msa0902760 | 0.861523 | 9.661050e-64 | -8.615850e-47 |
| Msa0784200 | Msa0931460 | 0.811072 | 8.404299e-51 | -8.615850e-47 |
| Msa0784200 | Msa0953310 | 0.831967 | 1.235982e-55 | -8.615850e-47 |
| Msa0784200 | Msa0968590 | 0.843378 | 1.453857e-58 | -8.615850e-47 |
| Msa0784200 | Msa1006840 | 0.815458 | 9.151725e-52 | -8.615850e-47 |
| Msa0784200 | Msa1012320 | 0.810632 | 1.046519e-50 | -8.615850e-47 |
| Msa0784200 | Msa1013400 | 0.871666 | 5.743806e-67 | -8.615850e-47 |
| Msa0784200 | Msa1019260 | 0.823608 | 1.263721e-53 | -8.615850e-47 |
| Msa0784200 | Msa1040400 | 0.801548 | 8.549953e-49 | -8.615850e-47 |
| Msa0784200 | Msa1050210 | 0.803061 | 4.172292e-49 | -8.615850e-47 |
| Msa0784200 | Msa1078270 | 0.853796 | 1.886025e-61 | -8.615850e-47 |
| Msa0784200 | Msa1081150 | 0.848892 | 4.588291e-60 | -8.615850e-47 |
| Msa0784200 | Msa1081930 | 0.816484 | 5.401721e-52 | -8.615850e-47 |
| Msa0784200 | Msa1081990 | 0.854814 | 9.578136e-62 | -8.615850e-47 |
| Msa0784200 | Msa1091530 | 0.809360 | 1.966418e-50 | -8.615850e-47 |
| Msa0784200 | Msa1093530 | 0.861347 | 1.093503e-63 | -8.615850e-47 |
| Msa0784200 | Msa1093840 | 0.804851 | 1.771172e-49 | -8.615850e-47 |
| Msa0784200 | Msa1101600 | 0.851229 | 1.016492e-60 | -8.615850e-47 |
| Msa0784200 | Msa1104140 | 0.812320 | 4.497837e-51 | -8.615850e-47 |
| Msa0784200 | Msa1123500 | 0.817085 | 3.959407e-52 | -8.615850e-47 |
| Msa0784200 | Msa1126510 | 0.897186 | 1.793897e-76 | -8.615850e-47 |
| Msa0784200 | Msa1126770 | 0.851557 | 8.215310e-61 | -8.615850e-47 |
| Msa0784200 | Msa1127890 | 0.804824 | 1.794194e-49 | -8.615850e-47 |
| Msa0784200 | Msa1130980 | 0.819163 | 1.341424e-52 | -8.615850e-47 |
| Msa0784200 | Msa1158570 | 0.807098 | 5.966544e-50 | -8.615850e-47 |
| Msa0784200 | Msa1165870 | 0.814870 | 1.235896e-51 | -8.615850e-47 |
| Msa0784200 | Msa1165940 | 0.886928 | 2.230573e-72 | -8.615850e-47 |
| Msa0784200 | Msa1166330 | 0.809786 | 1.592631e-50 | -8.615850e-47 |
| Msa0784200 | Msa1166860 | 0.879453 | 1.231372e-69 | -8.615850e-47 |
| Msa0784200 | Msa1169770 | 0.853039 | 3.108863e-61 | -8.615850e-47 |
| Msa0784200 | Msa1207270 | 0.849590 | 2.932130e-60 | -8.615850e-47 |
| Msa0784200 | Msa1210810 | 0.800133 | 1.662960e-48 | -8.615850e-47 |
| Msa0784200 | Msa1218600 | 0.878578 | 2.507563e-69 | -8.615850e-47 |
| Msa0784200 | Msa1229320 | 0.854916 | 8.945208e-62 | -8.615850e-47 |
| Msa0784200 | Msa1239910 | 0.807347 | 5.283169e-50 | -8.615850e-47 |
| Msa0784200 | Msa1251160 | 0.861683 | 8.635420e-64 | -8.615850e-47 |
| Msa0784200 | Msa1257510 | 0.862236 | 5.845114e-64 | -8.615850e-47 |
| Msa0784200 | Msa1283170 | 0.821218 | 4.538182e-53 | -8.615850e-47 |
| Msa0784200 | Msa1307950 | 0.815031 | 1.138628e-51 | -8.615850e-47 |
| Msa0784200 | Msa1321630 | 0.833318 | 5.713291e-56 | -8.615850e-47 |
| Msa0784200 | Msa1338190 | 0.807100 | 5.961052e-50 | -8.615850e-47 |
| Msa0784200 | Msa1343260 | 0.847824 | 9.052843e-60 | -8.615850e-47 |
| Msa0784200 | Msa1353060 | 0.820507 | 6.611739e-53 | -8.615850e-47 |
| Msa0784200 | Msa1358220 | 0.827236 | 1.749112e-54 | -8.615850e-47 |
| Msa0784200 | Msa1361100 | 0.817647 | 2.958526e-52 | -8.615850e-47 |
| Msa0784200 | Msa1366800 | 0.806261 | 8.965790e-50 | -8.615850e-47 |
| Msa0784200 | Msa1367590 | 0.820098 | 8.209028e-53 | -8.615850e-47 |
| Msa0784200 | Msa1370860 | 0.801815 | 7.536821e-49 | -8.615850e-47 |
| Msa0784200 | Msa1379760 | 0.822144 | 2.771597e-53 | -8.615850e-47 |
| Msa0784200 | Msa1382780 | 0.817443 | 3.288650e-52 | -8.615850e-47 |
| Msa0784200 | Msa1407460 | 0.816305 | 5.921522e-52 | -8.615850e-47 |
| Msa0784200 | Msa1413690 | 0.803763 | 2.984747e-49 | -8.615850e-47 |
| Msa0784200 | Msa1418340 | 0.821230 | 4.509767e-53 | -8.615850e-47 |
| Msa0784200 | Msa1430240 | 0.835364 | 1.752212e-56 | -8.615850e-47 |
| Msa0784200 | Msa1443780 | 0.808357 | 3.222964e-50 | -8.615850e-47 |
| Msa0784200 | Msa1448690 | 0.823750 | 1.170997e-53 | -8.615850e-47 |
| Msa0784200 | Msa1450280 | 0.816422 | 5.574359e-52 | -8.615850e-47 |
| Msa0784200 | Msa1456050 | 0.805872 | 1.082294e-49 | -8.615850e-47 |
| Msa0125540 | Msa0784200 | 0.815176 | 1.057021e-51 | -8.615850e-47 |
| Msa0128860 | Msa0784200 | 0.827618 | 1.416324e-54 | -8.615850e-47 |
| Msa0140820 | Msa0784200 | 0.858392 | 8.499961e-63 | -8.615850e-47 |
| Msa0140850 | Msa0784200 | 0.855384 | 6.543266e-62 | -8.615850e-47 |
| Msa0148060 | Msa0784200 | 0.831893 | 1.288997e-55 | -8.615850e-47 |
| Msa0149190 | Msa0784200 | 0.807378 | 5.204180e-50 | -8.615850e-47 |
| Msa0149200 | Msa0784200 | 0.850088 | 2.128073e-60 | -8.615850e-47 |
| Msa0151370 | Msa0784200 | 0.817202 | 3.726674e-52 | -8.615850e-47 |
| Msa0166590 | Msa0784200 | 0.829542 | 4.856626e-55 | -8.615850e-47 |
| Msa0174730 | Msa0784200 | 0.828469 | 8.835733e-55 | -8.615850e-47 |
| Msa0181610 | Msa0784200 | 0.811879 | 5.612726e-51 | -8.615850e-47 |
| Msa0187930 | Msa0784200 | 0.812404 | 4.313199e-51 | -8.615850e-47 |
| Msa0189700 | Msa0784200 | 0.841551 | 4.438282e-58 | -8.615850e-47 |
| Msa0194540 | Msa0784200 | 0.809743 | 1.627582e-50 | -8.615850e-47 |
| Msa0197930 | Msa0784200 | 0.805435 | 1.336657e-49 | -8.615850e-47 |
| Msa0199880 | Msa0784200 | 0.832907 | 7.232607e-56 | -8.615850e-47 |
| Msa0229230 | Msa0784200 | 0.825347 | 4.925945e-54 | -8.615850e-47 |
| Msa0229760 | Msa0784200 | 0.867179 | 1.656538e-65 | -8.615850e-47 |
| Msa0232010 | Msa0784200 | 0.857547 | 1.515504e-62 | -8.615850e-47 |
| Msa0232080 | Msa0784200 | 0.857920 | 1.174467e-62 | -8.615850e-47 |
| Msa0366890 | Msa0784200 | 0.819781 | 9.696062e-53 | -8.615850e-47 |
| Msa0369450 | Msa0784200 | 0.897432 | 1.414674e-76 | -8.615850e-47 |
| Msa0380300 | Msa0784200 | 0.839058 | 1.988201e-57 | -8.615850e-47 |
| Msa0387730 | Msa0784200 | 0.848534 | 5.766922e-60 | -8.615850e-47 |
| Msa0390030 | Msa0784200 | 0.823833 | 1.119437e-53 | -8.615850e-47 |
| Msa0395820 | Msa0784200 | 0.831055 | 2.073161e-55 | -8.615850e-47 |
| Msa0427150 | Msa0784200 | 0.810934 | 9.005607e-51 | -8.615850e-47 |
| Msa0432210 | Msa0784200 | 0.839107 | 1.930784e-57 | -8.615850e-47 |
| Msa0438690 | Msa0784200 | 0.830246 | 3.272484e-55 | -8.615850e-47 |
| Msa0439200 | Msa0784200 | 0.808456 | 3.069279e-50 | -8.615850e-47 |
| Msa0468330 | Msa0784200 | 0.825453 | 4.649934e-54 | -8.615850e-47 |
| Msa0471440 | Msa0784200 | 0.803287 | 3.747173e-49 | -8.615850e-47 |
| Msa0482650 | Msa0784200 | 0.842162 | 3.060026e-58 | -8.615850e-47 |
| Msa0242410 | Msa0784200 | 0.804436 | 2.162469e-49 | -8.615850e-47 |
| Msa0244780 | Msa0784200 | 0.812447 | 4.221064e-51 | -8.615850e-47 |
| Msa0255090 | Msa0784200 | 0.800551 | 1.366518e-48 | -8.615850e-47 |
| Msa0268130 | Msa0784200 | 0.822475 | 2.321790e-53 | -8.615850e-47 |
| Msa0273900 | Msa0784200 | 0.806216 | 9.162331e-50 | -8.615850e-47 |
| Msa0280610 | Msa0784200 | 0.884580 | 1.698782e-71 | -8.615850e-47 |
| Msa0298990 | Msa0784200 | 0.824631 | 7.271124e-54 | -8.615850e-47 |
| Msa0300090 | Msa0784200 | 0.825189 | 5.369196e-54 | -8.615850e-47 |
| Msa0300120 | Msa0784200 | 0.815893 | 7.318310e-52 | -8.615850e-47 |
| Msa0315170 | Msa0784200 | 0.853592 | 2.157957e-61 | -8.615850e-47 |
| Msa0317280 | Msa0784200 | 0.819925 | 8.989478e-53 | -8.615850e-47 |
| Msa0317340 | Msa0784200 | 0.830065 | 3.622217e-55 | -8.615850e-47 |
| Msa0497490 | Msa0784200 | 0.806302 | 8.785184e-50 | -8.615850e-47 |
| Msa0518390 | Msa0784200 | 0.887078 | 1.956511e-72 | -8.615850e-47 |
| Msa0518450 | Msa0784200 | 0.886980 | 2.132110e-72 | -8.615850e-47 |
| Msa0521050 | Msa0784200 | 0.881122 | 3.119018e-70 | -8.615850e-47 |
| Msa0524500 | Msa0784200 | 0.834197 | 3.444619e-56 | -8.615850e-47 |
| Msa0527550 | Msa0784200 | 0.837151 | 6.155228e-57 | -8.615850e-47 |
| Msa0552810 | Msa0784200 | 0.850571 | 1.558077e-60 | -8.615850e-47 |
| Msa0566700 | Msa0784200 | 0.835604 | 1.523320e-56 | -8.615850e-47 |
| Msa0575170 | Msa0784200 | 0.827484 | 1.525176e-54 | -8.615850e-47 |
| Msa0581070 | Msa0784200 | 0.832002 | 1.212124e-55 | -8.615850e-47 |
| Msa0581110 | Msa0784200 | 0.804648 | 1.953144e-49 | -8.615850e-47 |
| Msa0588360 | Msa0784200 | 0.828152 | 1.053872e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0784200 | MtrunA17_Chr5g0398151 | 90.099 | 101 | 7 | 1 | 1 | 98 | 106 | 206 | 9.96e-61 | 193 |
| Msa0784200 | MtrunA17_Chr6g0474311 | 84.848 | 99 | 12 | 1 | 3 | 98 | 108 | 206 | 8.33e-58 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0784200 | AT4G11820.3 | 86.139 | 101 | 11 | 1 | 1 | 98 | 47 | 147 | 4.74e-61 | 193 |
| Msa0784200 | AT4G11820.1 | 86.139 | 101 | 11 | 1 | 1 | 98 | 47 | 147 | 4.74e-61 | 193 |
| Msa0784200 | AT4G11820.2 | 86.139 | 101 | 11 | 1 | 1 | 98 | 102 | 202 | 2.39e-60 | 192 |
Find 41 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATGTAGTTTAGCAGAAAT+TGG | 0.183967 | 5_2:+68612512 | Msa0784200:three_prime_UTR |
| AATTTGCTTTCAAAAGAAAT+AGG | 0.211375 | 5_2:-68607481 | None:intergenic |
| TATCCAACAAAATTATTAAT+AGG | 0.224730 | 5_2:-68612306 | None:intergenic |
| CATCTTAATCTCATTAGTTT+TGG | 0.281168 | 5_2:+68612360 | Msa0784200:three_prime_UTR |
| CTTTGTTCAATTGTGTCAAT+TGG | 0.290856 | 5_2:+68607192 | Msa0784200:CDS |
| ATTTGCTTTCAAAAGAAATA+GGG | 0.301924 | 5_2:-68607480 | None:intergenic |
| GATGTTATTGCTATGCTAAT+TGG | 0.307768 | 5_2:+68607448 | Msa0784200:CDS |
| CCTTAGAATCTCGTTATATT+CGG | 0.330694 | 5_2:+68612412 | Msa0784200:three_prime_UTR |
| TAGATCTCTGTCTCATCTTT+CGG | 0.343914 | 5_2:-68612209 | None:intergenic |
| TCAAAAGAAATAGGGGTATC+AGG | 0.344293 | 5_2:-68607472 | None:intergenic |
| CCGAATATAACGAGATTCTA+AGG | 0.379000 | 5_2:-68612412 | None:intergenic |
| TTTGTCGTAAACCTAGTTGA+TGG | 0.405515 | 5_2:-68612008 | None:intergenic |
| GAGATCTAAGTAGTGAGCTT+TGG | 0.432068 | 5_2:+68612224 | Msa0784200:exon |
| GATGTAGTTTAGCAGAAATT+GGG | 0.447465 | 5_2:+68612513 | Msa0784200:three_prime_UTR |
| AGCAATAACATCAGCTCCTC+CGG | 0.457346 | 5_2:-68607437 | None:intergenic |
| AATTCATGGGATGGACGTTA+TGG | 0.461103 | 5_2:+68607224 | Msa0784200:CDS |
| CAAATTGAGGAGAAGTCATA+TGG | 0.466992 | 5_2:+68607498 | Msa0784200:CDS |
| ATTGGGTGGAAAGCAATTCA+TGG | 0.481693 | 5_2:+68607210 | Msa0784200:CDS |
| GCTCCTCCGGTAGGTCGAGC+AGG | 0.484323 | 5_2:-68607424 | None:intergenic |
| TTTGTTCAATTGTGTCAATT+GGG | 0.489475 | 5_2:+68607193 | Msa0784200:CDS |
| CTTTCTCAGGTCTATGCTGA+AGG | 0.492679 | 5_2:+68607400 | Msa0784200:intron |
| AGTGGAAGAAGAAGCGTATG+AGG | 0.496041 | 5_2:+68612169 | Msa0784200:intron |
| GAAGGTCCTGCTCGACCTAC+CGG | 0.502083 | 5_2:+68607418 | Msa0784200:CDS |
| TCTTTCAGCGGCCATCAACT+AGG | 0.508309 | 5_2:+68611997 | Msa0784200:intron |
| GGGTATTCACTAGCAAGGTC+AGG | 0.527013 | 5_2:-68607544 | None:intergenic |
| TTTGCTTTCAAAAGAAATAG+GGG | 0.528271 | 5_2:-68607479 | None:intergenic |
| ACCTTGGCTCTCATCTTGAA+CGG | 0.537225 | 5_2:-68612039 | None:intergenic |
| AGCGTATGAGGAGATTGAAG+AGG | 0.544618 | 5_2:+68612181 | Msa0784200:CDS |
| TTGGGTGGAAAGCAATTCAT+GGG | 0.580326 | 5_2:+68607211 | Msa0784200:CDS |
| GAAGGTGTTGATGCTTGCTA+TGG | 0.580870 | 5_2:+68607158 | Msa0784200:CDS |
| GTGGAAAGCAATTCATGGGA+TGG | 0.589873 | 5_2:+68607215 | Msa0784200:CDS |
| GGTGTTGATGCTTGCTATGG+AGG | 0.599655 | 5_2:+68607161 | Msa0784200:CDS |
| GTTCAATTGTGTCAATTGGG+TGG | 0.612168 | 5_2:+68607196 | Msa0784200:CDS |
| GTCTGGAACAAACAGAAATG+TGG | 0.619530 | 5_2:+68607122 | None:intergenic |
| TGTGGAAATACTGACATTGA+AGG | 0.635172 | 5_2:+68607140 | Msa0784200:CDS |
| GGTCCTGCTCGACCTACCGG+AGG | 0.636919 | 5_2:+68607421 | Msa0784200:CDS |
| TGACCTTGCTAGTGAATACC+CGG | 0.639253 | 5_2:+68607546 | Msa0784200:CDS |
| TTACCGGGTATTCACTAGCA+AGG | 0.643611 | 5_2:-68607549 | None:intergenic |
| ATAACATCAGCTCCTCCGGT+AGG | 0.645543 | 5_2:-68607433 | None:intergenic |
| ACCGTTCAAGATGAGAGCCA+AGG | 0.661428 | 5_2:+68612038 | Msa0784200:CDS |
| ATTGACACAATTGAACAAAG+CGG | 0.706527 | 5_2:-68607189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATATAGTTTTATATAATTT+TGG | + | chr5_2:68609131-68609150 | Msa0784200:intron | 10.0% |
| !!! | TTAATAATAGTGAATTATTT+TGG | + | chr5_2:68609204-68609223 | Msa0784200:intron | 10.0% |
| !!! | TCTACAATTTTATTAAAAAA+TGG | - | chr5_2:68610345-68610364 | None:intergenic | 10.0% |
| !!! | TTTTTTAATAAAATTGTAGA+AGG | + | chr5_2:68610345-68610364 | Msa0784200:intron | 10.0% |
| !!! | TTTTAAATAAAAAGAAAAGA+AGG | - | chr5_2:68610788-68610807 | None:intergenic | 10.0% |
| !! | ATAGATAAAAATGAAATATT+AGG | - | chr5_2:68611578-68611597 | None:intergenic | 10.0% |
| !!! | TTTATCTATCTTTTTATAAA+TGG | + | chr5_2:68611589-68611608 | Msa0784200:intron | 10.0% |
| !!! | AAACCATAAATACAATTTTA+AGG | - | chr5_2:68607972-68607991 | None:intergenic | 15.0% |
| !!! | ATTAAAATTAAAAAGTGCAA+AGG | + | chr5_2:68608195-68608214 | Msa0784200:intron | 15.0% |
| !! | ACATTATAAATAGTAATCTT+TGG | + | chr5_2:68608782-68608801 | Msa0784200:intron | 15.0% |
| !! | AATTATTTAGAAGAATGTTA+TGG | - | chr5_2:68609072-68609091 | None:intergenic | 15.0% |
| !!! | GATTTTGTAAAACTATTTTT+AGG | + | chr5_2:68609613-68609632 | Msa0784200:intron | 15.0% |
| !!! | ACAATTTTTTATCTTGTAAA+CGG | + | chr5_2:68610099-68610118 | Msa0784200:intron | 15.0% |
| !!! | TTTTTTTCATTGAATTGTTT+CGG | - | chr5_2:68610523-68610542 | None:intergenic | 15.0% |
| !!! | TTATAACTTGATTTTAATGT+TGG | + | chr5_2:68610983-68611002 | Msa0784200:intron | 15.0% |
| !!! | AATCCTATTAATAATTTTGT+TGG | + | chr5_2:68612303-68612322 | Msa0784200:three_prime_UTR | 15.0% |
| !! | TATCCAACAAAATTATTAAT+AGG | - | chr5_2:68612309-68612328 | None:intergenic | 15.0% |
| !!! | ACTACTTTGATAATTTTTTT+TGG | + | chr5_2:68612453-68612472 | Msa0784200:three_prime_UTR | 15.0% |
| !!! | CTACTTTGATAATTTTTTTT+GGG | + | chr5_2:68612454-68612473 | Msa0784200:three_prime_UTR | 15.0% |
| !! | AGGTTTATTATTACTGAATA+GGG | - | chr5_2:68607310-68607329 | None:intergenic | 20.0% |
| !! | AAGGTTTATTATTACTGAAT+AGG | - | chr5_2:68607311-68607330 | None:intergenic | 20.0% |
| !!! | AATTTTTTAGTTCAGAATCA+AGG | - | chr5_2:68607330-68607349 | None:intergenic | 20.0% |
| !! | ATTTGCTTTCAAAAGAAATA+GGG | - | chr5_2:68607483-68607502 | None:intergenic | 20.0% |
| !!! | AATTTGCTTTCAAAAGAAAT+AGG | - | chr5_2:68607484-68607503 | None:intergenic | 20.0% |
| !!! | TTTTGTACGAAAATGATTTA+TGG | + | chr5_2:68608065-68608084 | Msa0784200:intron | 20.0% |
| !! | GTCTGAAAAAATATCAATAT+TGG | - | chr5_2:68608669-68608688 | None:intergenic | 20.0% |
| !!! | AGACCAAGAAAAATAATTTT+TGG | + | chr5_2:68608758-68608777 | Msa0784200:intron | 20.0% |
| !!! | ATTTTTAGGATATGACAAAT+TGG | + | chr5_2:68609627-68609646 | Msa0784200:intron | 20.0% |
| !!! | TTATGATGTCGAATAATTTT+TGG | - | chr5_2:68609737-68609756 | None:intergenic | 20.0% |
| !! | TATGTTAAGAACTGATTAAA+GGG | - | chr5_2:68609836-68609855 | None:intergenic | 20.0% |
| !! | ATATGTTAAGAACTGATTAA+AGG | - | chr5_2:68609837-68609856 | None:intergenic | 20.0% |
| !!! | TCTCTCTAAAAGTTTTAATA+AGG | - | chr5_2:68610016-68610035 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCAAAAAATGGGA+GGG | - | chr5_2:68610308-68610327 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCAAAAAATGGG+AGG | - | chr5_2:68610309-68610328 | None:intergenic | 20.0% |
| !!! | AATTTTTTTGCTCAACTATA+TGG | + | chr5_2:68610608-68610627 | Msa0784200:intron | 20.0% |
| !!! | ATTTTTCTTATTTTGCAGTT+TGG | - | chr5_2:68610676-68610695 | None:intergenic | 20.0% |
| !! | ATAGACTATGTTAAAAACAT+GGG | - | chr5_2:68610877-68610896 | None:intergenic | 20.0% |
| !! | TGAATTATAATCACTTATTC+TGG | + | chr5_2:68612094-68612113 | Msa0784200:intron | 20.0% |
| !!! | TTTCATGTTTTGATACATTA+TGG | + | chr5_2:68612331-68612350 | Msa0784200:three_prime_UTR | 20.0% |
| !!! | TTCATGTTTTGATACATTAT+GGG | + | chr5_2:68612332-68612351 | Msa0784200:three_prime_UTR | 20.0% |
| ! | TTTGTTCAATTGTGTCAATT+GGG | + | chr5_2:68607193-68607212 | Msa0784200:CDS | 25.0% |
| ! | TTTGCTTTCAAAAGAAATAG+GGG | - | chr5_2:68607482-68607501 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGAAAGCAAATTG+AGG | + | chr5_2:68607485-68607504 | Msa0784200:CDS | 25.0% |
| ! | AACAAAAATGTTATCCTTCA+TGG | - | chr5_2:68607713-68607732 | None:intergenic | 25.0% |
| ! | GGACCTTAAAATTGTATTTA+TGG | + | chr5_2:68607966-68607985 | Msa0784200:intron | 25.0% |
| ! | AGTGCAAAGGAATAAAAAAA+AGG | + | chr5_2:68608208-68608227 | Msa0784200:intron | 25.0% |
| ! | GTGCAAAGGAATAAAAAAAA+GGG | + | chr5_2:68608209-68608228 | Msa0784200:intron | 25.0% |
| ! | TGCAAAGGAATAAAAAAAAG+GGG | + | chr5_2:68608210-68608229 | Msa0784200:intron | 25.0% |
| !!! | ATACTGATTTGAATTACTGA+CGG | - | chr5_2:68608260-68608279 | None:intergenic | 25.0% |
| ! | CAAATCAGTATAAACATTAC+TGG | + | chr5_2:68608269-68608288 | Msa0784200:intron | 25.0% |
| ! | TGATTTCATAATTCTGATGA+AGG | + | chr5_2:68608596-68608615 | Msa0784200:intron | 25.0% |
| ! | CAAGCTAAGATACTTATAAT+GGG | - | chr5_2:68608712-68608731 | None:intergenic | 25.0% |
| !!! | GTGCCAAAAATTATTTTTCT+TGG | - | chr5_2:68608764-68608783 | None:intergenic | 25.0% |
| ! | ATGGGTTTCAATTAAAATGA+TGG | + | chr5_2:68608983-68609002 | Msa0784200:intron | 25.0% |
| ! | TGGGTTTCAATTAAAATGAT+GGG | + | chr5_2:68608984-68609003 | Msa0784200:intron | 25.0% |
| ! | CTTCTTAGATTTACATTTCT+CGG | - | chr5_2:68609170-68609189 | None:intergenic | 25.0% |
| !! | CCTTTTATCTTTATCTGTTT+GGG | - | chr5_2:68609367-68609386 | None:intergenic | 25.0% |
| !! | TCCTTTTATCTTTATCTGTT+TGG | - | chr5_2:68609368-68609387 | None:intergenic | 25.0% |
| ! | GTCACATAAAGATAAATACA+TGG | - | chr5_2:68609407-68609426 | None:intergenic | 25.0% |
| !! | TTGTCTTTTGCATTTTTAAC+TGG | + | chr5_2:68609538-68609557 | Msa0784200:intron | 25.0% |
| ! | GTTGTATTCTGATTTAATGA+GGG | - | chr5_2:68609687-68609706 | None:intergenic | 25.0% |
| ! | AGTTGTATTCTGATTTAATG+AGG | - | chr5_2:68609688-68609707 | None:intergenic | 25.0% |
| !! | TCTACAATCATTTTGCTTAA+GGG | - | chr5_2:68609878-68609897 | None:intergenic | 25.0% |
| !! | TGATTGTAGAGTAACTATTT+TGG | + | chr5_2:68609888-68609907 | Msa0784200:intron | 25.0% |
| ! | GTGAAAGATTAACATTATCT+GGG | + | chr5_2:68609965-68609984 | Msa0784200:intron | 25.0% |
| ! | TTAAAACAACTTATTCGAGT+TGG | - | chr5_2:68610484-68610503 | None:intergenic | 25.0% |
| !!! | TCGAATAAGTTGTTTTAAGT+AGG | + | chr5_2:68610486-68610505 | Msa0784200:intron | 25.0% |
| !!! | CGAATAAGTTGTTTTAAGTA+GGG | + | chr5_2:68610487-68610506 | Msa0784200:intron | 25.0% |
| !!! | GAATAAGTTGTTTTAAGTAG+GGG | + | chr5_2:68610488-68610507 | Msa0784200:intron | 25.0% |
| !! | CATTGAGTTTTTATGAGTAT+TGG | - | chr5_2:68610724-68610743 | None:intergenic | 25.0% |
| ! | AGAAAAGAAGGAATTTAACA+AGG | - | chr5_2:68610776-68610795 | None:intergenic | 25.0% |
| ! | CATAGACTATGTTAAAAACA+TGG | - | chr5_2:68610878-68610897 | None:intergenic | 25.0% |
| ! | TTTAACATAGTCTATGTTGT+TGG | + | chr5_2:68610882-68610901 | Msa0784200:intron | 25.0% |
| ! | TAAGAAACTACTTGAAACTA+CGG | - | chr5_2:68611198-68611217 | None:intergenic | 25.0% |
| ! | GGTAAATGATGTTTGATAAA+TGG | - | chr5_2:68611259-68611278 | None:intergenic | 25.0% |
| !! | ATTCTATTTCTCACAATAGA+CGG | - | chr5_2:68611280-68611299 | None:intergenic | 25.0% |
| !! | ATCATTTTCCAGTCAAAATT+TGG | + | chr5_2:68611648-68611667 | Msa0784200:intron | 25.0% |
| !! | TCATTTTCCAGTCAAAATTT+GGG | + | chr5_2:68611649-68611668 | Msa0784200:intron | 25.0% |
| !!! | ACAAGTGTCTTTAAGTTTTT+GGG | - | chr5_2:68611682-68611701 | None:intergenic | 25.0% |
| !!! | AACAAGTGTCTTTAAGTTTT+TGG | - | chr5_2:68611683-68611702 | None:intergenic | 25.0% |
| !! | TAAATGGGCTTTAATCAATT+GGG | - | chr5_2:68611913-68611932 | None:intergenic | 25.0% |
| ! | CAGATAATAAGCATGTAAAT+GGG | - | chr5_2:68611928-68611947 | None:intergenic | 25.0% |
| !!! | TTATCTTTTTCATCTTTCAG+CGG | + | chr5_2:68611985-68612004 | Msa0784200:intron | 25.0% |
| !!! | CATCTTAATCTCATTAGTTT+TGG | + | chr5_2:68612360-68612379 | Msa0784200:three_prime_UTR | 25.0% |
| ATTGACACAATTGAACAAAG+CGG | - | chr5_2:68607192-68607211 | None:intergenic | 30.0% | |
| CTTTGTTCAATTGTGTCAAT+TGG | + | chr5_2:68607192-68607211 | Msa0784200:CDS | 30.0% | |
| GAACTAAAAAATTCATGTCC+TGG | + | chr5_2:68607337-68607356 | Msa0784200:intron | 30.0% | |
| GATGTTATTGCTATGCTAAT+TGG | + | chr5_2:68607448-68607467 | Msa0784200:CDS | 30.0% | |
| !! | AAATGGATTGAAAAGCTTAC+CGG | - | chr5_2:68607568-68607587 | None:intergenic | 30.0% |
| ACAAGTGACAACAATGAAAA+TGG | - | chr5_2:68607585-68607604 | None:intergenic | 30.0% | |
| ! | TTGTCAGAACAGTTTACTTT+TGG | + | chr5_2:68607601-68607620 | Msa0784200:intron | 30.0% |
| AAAGCCAAATTAAAGTTGCA+AGG | - | chr5_2:68607684-68607703 | None:intergenic | 30.0% | |
| !!! | GATTTTGATCGGTGTTATTT+AGG | + | chr5_2:68607760-68607779 | Msa0784200:intron | 30.0% |
| ACTGTGTTAGTTGATTGTTT+AGG | + | chr5_2:68607845-68607864 | Msa0784200:intron | 30.0% | |
| CTGTGTTAGTTGATTGTTTA+GGG | + | chr5_2:68607846-68607865 | Msa0784200:intron | 30.0% | |
| !!! | CTGTTTAGATGTTTTTGGAT+CGG | + | chr5_2:68607870-68607889 | Msa0784200:intron | 30.0% |
| GCAAAGGAATAAAAAAAAGG+GGG | + | chr5_2:68608211-68608230 | Msa0784200:intron | 30.0% | |
| ATCAGTATAAACATTACTGG+CGG | + | chr5_2:68608272-68608291 | Msa0784200:intron | 30.0% | |
| !! | TTTTGACAAAGCATTACTGA+GGG | + | chr5_2:68608322-68608341 | Msa0784200:intron | 30.0% |
| !! | TTTTGACAAAGCATTACTGA+GGG | - | chr5_2:68608322-68608341 | None:intergenic | 30.0% |
| ! | GAAATTTTCCCTCAGTAATA+GGG | - | chr5_2:68608436-68608455 | None:intergenic | 30.0% |
| ACCAGTAATACATATTAGTG+AGG | + | chr5_2:68608501-68608520 | Msa0784200:intron | 30.0% | |
| CCAGTAATACATATTAGTGA+GGG | + | chr5_2:68608502-68608521 | Msa0784200:intron | 30.0% | |
| !!! | AAGAGTTTTGGTTTTTACTG+GGG | - | chr5_2:68608556-68608575 | None:intergenic | 30.0% |
| !!! | CAAGAGTTTTGGTTTTTACT+GGG | - | chr5_2:68608557-68608576 | None:intergenic | 30.0% |
| !!! | ACAAGAGTTTTGGTTTTTAC+TGG | - | chr5_2:68608558-68608577 | None:intergenic | 30.0% |
| ! | TACTTACACTACAAGAGTTT+TGG | - | chr5_2:68608568-68608587 | None:intergenic | 30.0% |
| GATGAAGGATATACAGTTAA+AGG | + | chr5_2:68608611-68608630 | Msa0784200:intron | 30.0% | |
| GCAAGCTAAGATACTTATAA+TGG | - | chr5_2:68608713-68608732 | None:intergenic | 30.0% | |
| !! | TATAAGTATCTTAGCTTGCA+TGG | + | chr5_2:68608714-68608733 | Msa0784200:intron | 30.0% |
| !!! | TTTGGTTTTTTAAACGTGTG+AGG | + | chr5_2:68608800-68608819 | Msa0784200:intron | 30.0% |
| GACACTATAGATGCATTAAA+AGG | - | chr5_2:68608857-68608876 | None:intergenic | 30.0% | |
| CCACAAACTTCAAACTTAAT+AGG | - | chr5_2:68609245-68609264 | None:intergenic | 30.0% | |
| ! | CCTATTAAGTTTGAAGTTTG+TGG | + | chr5_2:68609242-68609261 | Msa0784200:intron | 30.0% |
| ACAAAATGTAAGCAGTCATA+TGG | - | chr5_2:68609269-68609288 | None:intergenic | 30.0% | |
| !! | TGACTGCTTACATTTTGTTT+TGG | + | chr5_2:68609271-68609290 | Msa0784200:intron | 30.0% |
| TAAGAACGCTAAAGATCAAA+AGG | + | chr5_2:68609318-68609337 | Msa0784200:intron | 30.0% | |
| AAGAACGCTAAAGATCAAAA+GGG | + | chr5_2:68609319-68609338 | Msa0784200:intron | 30.0% | |
| CCCAAACAGATAAAGATAAA+AGG | + | chr5_2:68609364-68609383 | Msa0784200:intron | 30.0% | |
| TGAAACTTCATGTTCCAATT+AGG | + | chr5_2:68609480-68609499 | Msa0784200:intron | 30.0% | |
| TTTCAAACTCATAGCCTAAT+TGG | - | chr5_2:68609497-68609516 | None:intergenic | 30.0% | |
| AATTAGGCTATGAGTTTGAA+AGG | + | chr5_2:68609496-68609515 | Msa0784200:intron | 30.0% | |
| ATTAGGCTATGAGTTTGAAA+GGG | + | chr5_2:68609497-68609516 | Msa0784200:intron | 30.0% | |
| !!! | TGGTCTTATACGATTTTTAG+TGG | - | chr5_2:68609717-68609736 | None:intergenic | 30.0% |
| ! | CTCTACAATCATTTTGCTTA+AGG | - | chr5_2:68609879-68609898 | None:intergenic | 30.0% |
| GGTGAAAGATTAACATTATC+TGG | + | chr5_2:68609964-68609983 | Msa0784200:intron | 30.0% | |
| !!! | GTTTTTTGCAATTTCGGTTT+TGG | - | chr5_2:68610562-68610581 | None:intergenic | 30.0% |
| !!! | AATGCGGTTTTTTGCAATTT+CGG | - | chr5_2:68610568-68610587 | None:intergenic | 30.0% |
| AAATTGCAAAAAACCGCATT+TGG | + | chr5_2:68610568-68610587 | Msa0784200:intron | 30.0% | |
| ! | TTTTGCTCAACTATATGGTT+TGG | + | chr5_2:68610613-68610632 | Msa0784200:intron | 30.0% |
| !!! | TCTTATTTTGCAGTTTGGTT+TGG | - | chr5_2:68610671-68610690 | None:intergenic | 30.0% |
| !!! | GTTTTTATGAGTATTGGTCT+AGG | - | chr5_2:68610718-68610737 | None:intergenic | 30.0% |
| AAAAATCATGCGGTTTAGTT+TGG | - | chr5_2:68611115-68611134 | None:intergenic | 30.0% | |
| CGCAAGATAAAAAAATCATG+CGG | - | chr5_2:68611125-68611144 | None:intergenic | 30.0% | |
| !!! | CGCATGATTTTTTTATCTTG+CGG | + | chr5_2:68611123-68611142 | Msa0784200:intron | 30.0% |
| TCGTGACAATTTACTGAATT+AGG | - | chr5_2:68611315-68611334 | None:intergenic | 30.0% | |
| ATTGAGAGGAGTTTATAAAG+AGG | - | chr5_2:68611394-68611413 | None:intergenic | 30.0% | |
| GGATAGATAAGATTATTGAG+AGG | - | chr5_2:68611408-68611427 | None:intergenic | 30.0% | |
| !! | CATGTGTTTCTAGAAAACAA+TGG | - | chr5_2:68611716-68611735 | None:intergenic | 30.0% |
| !! | CATTGTTTTCTAGAAACACA+TGG | + | chr5_2:68611714-68611733 | Msa0784200:intron | 30.0% |
| AAATGACCAAAAAAACTCAG+CGG | + | chr5_2:68611737-68611756 | Msa0784200:intron | 30.0% | |
| !!! | TAATTACCGCTGAGTTTTTT+TGG | - | chr5_2:68611746-68611765 | None:intergenic | 30.0% |
| ! | AACTTCTAGTTATAAGCCAT+CGG | + | chr5_2:68611776-68611795 | Msa0784200:intron | 30.0% |
| ! | GTAAATGGGCTTTAATCAAT+TGG | - | chr5_2:68611914-68611933 | None:intergenic | 30.0% |
| GCAGATAATAAGCATGTAAA+TGG | - | chr5_2:68611929-68611948 | None:intergenic | 30.0% | |
| TTACATGCTTATTATCTGCT+AGG | + | chr5_2:68611930-68611949 | Msa0784200:intron | 30.0% | |
| TACATGCTTATTATCTGCTA+GGG | + | chr5_2:68611931-68611950 | Msa0784200:intron | 30.0% | |
| TAAGGTTGCAACGATTTATA+GGG | - | chr5_2:68611968-68611987 | None:intergenic | 30.0% | |
| ATAAGGTTGCAACGATTTAT+AGG | - | chr5_2:68611969-68611988 | None:intergenic | 30.0% | |
| GCTGAAAGATGAAAAAGATA+AGG | - | chr5_2:68611986-68612005 | None:intergenic | 30.0% | |
| !! | CATTTCTAAGATGAGTAAAG+TGG | - | chr5_2:68612076-68612095 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTTGTTTTTGCAG+TGG | + | chr5_2:68612151-68612170 | Msa0784200:intron | 30.0% |
| CCTTAGAATCTCGTTATATT+CGG | + | chr5_2:68612412-68612431 | Msa0784200:three_prime_UTR | 30.0% | |
| GATGTAGTTTAGCAGAAATT+GGG | + | chr5_2:68612513-68612532 | Msa0784200:three_prime_UTR | 30.0% | |
| TGTGGAAATACTGACATTGA+AGG | + | chr5_2:68607140-68607159 | Msa0784200:CDS | 35.0% | |
| TATTACTGAATAGGGTCTAG+AGG | - | chr5_2:68607302-68607321 | None:intergenic | 35.0% | |
| CTGGATTCTATCACAATGTT+GGG | + | chr5_2:68607356-68607375 | Msa0784200:intron | 35.0% | |
| TGGATTCTATCACAATGTTG+GGG | + | chr5_2:68607357-68607376 | Msa0784200:intron | 35.0% | |
| CAATCAATGCTTACTTTCTC+AGG | + | chr5_2:68607387-68607406 | Msa0784200:intron | 35.0% | |
| !! | TCAAAAGAAATAGGGGTATC+AGG | - | chr5_2:68607475-68607494 | None:intergenic | 35.0% |
| CAAATTGAGGAGAAGTCATA+TGG | + | chr5_2:68607498-68607517 | Msa0784200:CDS | 35.0% | |
| !! | AATGGATTGAAAAGCTTACC+GGG | - | chr5_2:68607567-68607586 | None:intergenic | 35.0% |
| CATCACAAGGGAAAAACAAT+TGG | - | chr5_2:68607651-68607670 | None:intergenic | 35.0% | |
| GCATCCTTGCAACTTTAATT+TGG | + | chr5_2:68607677-68607696 | Msa0784200:intron | 35.0% | |
| ! | CATTTTTGTTCATGCCATGA+AGG | + | chr5_2:68607723-68607742 | Msa0784200:intron | 35.0% |
| !!! | TTCTGTTGGTGGATTTTGAT+CGG | + | chr5_2:68607749-68607768 | Msa0784200:intron | 35.0% |
| !!! | GCAGTTGCTACTGAATTTTT+TGG | + | chr5_2:68607806-68607825 | Msa0784200:intron | 35.0% |
| !!! | GCTACTGAATTTTTTGGCTT+TGG | + | chr5_2:68607812-68607831 | Msa0784200:intron | 35.0% |
| ! | AGGGACTGTTTAGATGTTTT+TGG | + | chr5_2:68607865-68607884 | Msa0784200:intron | 35.0% |
| !! | ATTTTCCCTCAGTAATGGAA+AGG | + | chr5_2:68608296-68608315 | Msa0784200:intron | 35.0% |
| !! | GTTTTGACAAAGCATTACTG+AGG | + | chr5_2:68608321-68608340 | Msa0784200:intron | 35.0% |
| ATTCCGTCAGTAATTACTGA+CGG | + | chr5_2:68608348-68608367 | Msa0784200:intron | 35.0% | |
| ATTCCGTCAGTAATTACTGA+CGG | - | chr5_2:68608348-68608367 | None:intergenic | 35.0% | |
| ATTGTTCCGTCAGTAATTAC+TGG | + | chr5_2:68608372-68608391 | Msa0784200:intron | 35.0% | |
| !! | GTTTTGACAAAGCATTACTG+AGG | - | chr5_2:68608321-68608340 | None:intergenic | 35.0% |
| ! | CGAAATTTTCCCTCAGTAAT+AGG | - | chr5_2:68608437-68608456 | None:intergenic | 35.0% |
| ATAAGCGTCAGTAATGTTAC+TGG | - | chr5_2:68608460-68608479 | None:intergenic | 35.0% | |
| TACTGACGCTTATATTACTG+AGG | + | chr5_2:68608467-68608486 | Msa0784200:intron | 35.0% | |
| ACTGACGCTTATATTACTGA+GGG | + | chr5_2:68608468-68608487 | Msa0784200:intron | 35.0% | |
| CCCTCACTAATATGTATTAC+TGG | - | chr5_2:68608505-68608524 | None:intergenic | 35.0% | |
| AGGGATTATTTGCATTACTG+AGG | + | chr5_2:68608521-68608540 | Msa0784200:intron | 35.0% | |
| GGGATTATTTGCATTACTGA+GGG | + | chr5_2:68608522-68608541 | Msa0784200:intron | 35.0% | |
| !!! | AGAGTTTTGGTTTTTACTGG+GGG | - | chr5_2:68608555-68608574 | None:intergenic | 35.0% |
| CAATATTGGAATGCTCAACT+TGG | - | chr5_2:68608655-68608674 | None:intergenic | 35.0% | |
| !! | TAGCTTGCATGGAGAATTTT+TGG | + | chr5_2:68608725-68608744 | Msa0784200:intron | 35.0% |
| TAAGAGAGTGAATGTTGGAA+GGG | - | chr5_2:68608929-68608948 | None:intergenic | 35.0% | |
| ATAAGAGAGTGAATGTTGGA+AGG | - | chr5_2:68608930-68608949 | None:intergenic | 35.0% | |
| TCCAACATTCACTCTCTTAT+TGG | + | chr5_2:68608930-68608949 | Msa0784200:intron | 35.0% | |
| AGAACGCTAAAGATCAAAAG+GGG | + | chr5_2:68609320-68609339 | Msa0784200:intron | 35.0% | |
| TTAGGCTATGAGTTTGAAAG+GGG | + | chr5_2:68609498-68609517 | Msa0784200:intron | 35.0% | |
| TGAAAGGGGGAATATTCTTA+CGG | + | chr5_2:68609512-68609531 | Msa0784200:intron | 35.0% | |
| AGATACATCAACACATCACA+TGG | - | chr5_2:68609780-68609799 | None:intergenic | 35.0% | |
| AGATAACTGCAGCATTAACA+TGG | + | chr5_2:68609943-68609962 | Msa0784200:intron | 35.0% | |
| ! | AAGGACTATTTTGTAATGCG+AGG | + | chr5_2:68610364-68610383 | Msa0784200:intron | 35.0% |
| ! | CTATGTTGTATTAGCCTATG+AGG | + | chr5_2:68610387-68610406 | Msa0784200:intron | 35.0% |
| !!! | AATTTCGGTTTTGGTTGGTT+CGG | - | chr5_2:68610553-68610572 | None:intergenic | 35.0% |
| !! | TTTGCAATTTCGGTTTTGGT+TGG | - | chr5_2:68610558-68610577 | None:intergenic | 35.0% |
| ! | CTCAACTATATGGTTTGGAT+TGG | + | chr5_2:68610618-68610637 | Msa0784200:intron | 35.0% |
| CAAACTAAACCAAACCAATG+CGG | - | chr5_2:68611062-68611081 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr5_2:68611345-68611364 | Msa0784200:intron | 35.0% | |
| ATAATCTTATCTATCCGACG+TGG | + | chr5_2:68611412-68611431 | Msa0784200:intron | 35.0% | |
| TAATCTTATCTATCCGACGT+GGG | + | chr5_2:68611413-68611432 | Msa0784200:intron | 35.0% | |
| TAAATCTATCCACTGAGTGT+TGG | + | chr5_2:68611438-68611457 | Msa0784200:intron | 35.0% | |
| ATACCATGTCACGAATTATG+AGG | + | chr5_2:68611552-68611571 | Msa0784200:intron | 35.0% | |
| !! | ATGTAAGCCCAAATTTTGAC+TGG | - | chr5_2:68611659-68611678 | None:intergenic | 35.0% |
| GCTTATAACTAGAAGTTCGA+CGG | - | chr5_2:68611773-68611792 | None:intergenic | 35.0% | |
| AATGACCAAAAATACTCCAG+CGG | - | chr5_2:68611812-68611831 | None:intergenic | 35.0% | |
| CATTGTTTCCTAGATACACA+TGG | - | chr5_2:68611836-68611855 | None:intergenic | 35.0% | |
| CATGTGTATCTAGGAAACAA+TGG | + | chr5_2:68611834-68611853 | Msa0784200:intron | 35.0% | |
| !!! | GCCTATTTTCTGTTTTTGGT+GGG | - | chr5_2:68611891-68611910 | None:intergenic | 35.0% |
| ! | TTGGGCCTATTTTCTGTTTT+TGG | - | chr5_2:68611895-68611914 | None:intergenic | 35.0% |
| TTTGTCGTAAACCTAGTTGA+TGG | - | chr5_2:68612011-68612030 | None:intergenic | 35.0% | |
| TAGATCTCTGTCTCATCTTT+CGG | - | chr5_2:68612212-68612231 | None:intergenic | 35.0% | |
| CCGAATATAACGAGATTCTA+AGG | - | chr5_2:68612415-68612434 | None:intergenic | 35.0% | |
| CGATGTAGTTTAGCAGAAAT+TGG | + | chr5_2:68612512-68612531 | Msa0784200:three_prime_UTR | 35.0% | |
| GTTCAATTGTGTCAATTGGG+TGG | + | chr5_2:68607196-68607215 | Msa0784200:CDS | 40.0% | |
| ATTGGGTGGAAAGCAATTCA+TGG | + | chr5_2:68607210-68607229 | Msa0784200:CDS | 40.0% | |
| TTGGGTGGAAAGCAATTCAT+GGG | + | chr5_2:68607211-68607230 | Msa0784200:CDS | 40.0% | |
| AATTCATGGGATGGACGTTA+TGG | + | chr5_2:68607224-68607243 | Msa0784200:CDS | 40.0% | |
| CCAACATTGTGATAGAATCC+AGG | - | chr5_2:68607358-68607377 | None:intergenic | 40.0% | |
| CCTGGATTCTATCACAATGT+TGG | + | chr5_2:68607355-68607374 | Msa0784200:intron | 40.0% | |
| GGATGCTTTGATCATCACAA+GGG | - | chr5_2:68607663-68607682 | None:intergenic | 40.0% | |
| AGGATGCTTTGATCATCACA+AGG | - | chr5_2:68607664-68607683 | None:intergenic | 40.0% | |
| !! | TTGGCTTTGATATGCCATGA+AGG | + | chr5_2:68607696-68607715 | Msa0784200:intron | 40.0% |
| !! | TGCCATGAAGGTATTTCTGT+TGG | + | chr5_2:68607735-68607754 | Msa0784200:intron | 40.0% |
| CACCAACAGAAATACCTTCA+TGG | - | chr5_2:68607740-68607759 | None:intergenic | 40.0% | |
| !! | CATGAAGGTATTTCTGTTGG+TGG | + | chr5_2:68607738-68607757 | Msa0784200:intron | 40.0% |
| AAATTCAGTAGCAACTGCAG+AGG | - | chr5_2:68607804-68607823 | None:intergenic | 40.0% | |
| TGCTAACAACAAACAGCAGT+AGG | - | chr5_2:68607941-68607960 | None:intergenic | 40.0% | |
| ! | AAAAGGGGGAAGTACATTAC+TGG | + | chr5_2:68608225-68608244 | Msa0784200:intron | 40.0% |
| AACCACCTTTCCATTACTGA+GGG | - | chr5_2:68608304-68608323 | None:intergenic | 40.0% | |
| AAACCACCTTTCCATTACTG+AGG | - | chr5_2:68608305-68608324 | None:intergenic | 40.0% | |
| ATTCCGCCAGTAATTACTGA+CGG | - | chr5_2:68608381-68608400 | None:intergenic | 40.0% | |
| AAACTACCTCCCTATTACTG+AGG | + | chr5_2:68608424-68608443 | Msa0784200:intron | 40.0% | |
| AACTACCTCCCTATTACTGA+GGG | + | chr5_2:68608425-68608444 | Msa0784200:intron | 40.0% | |
| ! | ATTTTCCCTCAGTAATAGGG+AGG | - | chr5_2:68608433-68608452 | None:intergenic | 40.0% |
| !!! | GGTTTTTTAAACGTGTGAGG+CGG | + | chr5_2:68608803-68608822 | Msa0784200:intron | 40.0% |
| AAGAGAGTGAATGTTGGAAG+GGG | - | chr5_2:68608928-68608947 | None:intergenic | 40.0% | |
| GCCAATAAGAGAGTGAATGT+TGG | - | chr5_2:68608934-68608953 | None:intergenic | 40.0% | |
| ! | TCTTATTGGCCTAAATCACG+TGG | + | chr5_2:68608944-68608963 | Msa0784200:intron | 40.0% |
| ! | CTTATTGGCCTAAATCACGT+GGG | + | chr5_2:68608945-68608964 | Msa0784200:intron | 40.0% |
| TGGGTCTCACATATTGGAAA+TGG | + | chr5_2:68608964-68608983 | Msa0784200:intron | 40.0% | |
| GGGTCTCACATATTGGAAAT+GGG | + | chr5_2:68608965-68608984 | Msa0784200:intron | 40.0% | |
| GAACGCTAAAGATCAAAAGG+GGG | + | chr5_2:68609321-68609340 | Msa0784200:intron | 40.0% | |
| TAGGCTATGAGTTTGAAAGG+GGG | + | chr5_2:68609499-68609518 | Msa0784200:intron | 40.0% | |
| !! | GCGATGTTGACTTGAAATCT+TGG | - | chr5_2:68610457-68610476 | None:intergenic | 40.0% |
| GCAAAAAACCGCATTTGGTT+CGG | + | chr5_2:68610573-68610592 | Msa0784200:intron | 40.0% | |
| GATTACATCCGAACCAAATG+CGG | - | chr5_2:68610584-68610603 | None:intergenic | 40.0% | |
| !! | GCATTTGGTTCGGATGTAAT+CGG | + | chr5_2:68610583-68610602 | Msa0784200:intron | 40.0% |
| !! | GCAGTTTGGTTTGGTTTGAT+TGG | - | chr5_2:68610662-68610681 | None:intergenic | 40.0% |
| AAACCAAACCAATGCGGTTT+GGG | - | chr5_2:68611056-68611075 | None:intergenic | 40.0% | |
| TAAACCAAACCAATGCGGTT+TGG | - | chr5_2:68611057-68611076 | None:intergenic | 40.0% | |
| !! | CGCATTGGTTTGGTTTAGTT+TGG | + | chr5_2:68611060-68611079 | Msa0784200:intron | 40.0% |
| !! | TCATGCGGTTTAGTTTGGTT+CGG | - | chr5_2:68611110-68611129 | None:intergenic | 40.0% |
| TCATCCTTACAAAACCGGTT+TGG | + | chr5_2:68611350-68611369 | Msa0784200:intron | 40.0% | |
| ATTCACGCTTCAGATGCATT+GGG | - | chr5_2:68611495-68611514 | None:intergenic | 40.0% | |
| ! | ATCTGAAGCGTGAATGATGT+AGG | + | chr5_2:68611500-68611519 | Msa0784200:intron | 40.0% |
| TAGGAAGCCCAATAATAGAC+CGG | + | chr5_2:68611519-68611538 | Msa0784200:intron | 40.0% | |
| AGCCTATCCGGTCTATTATT+GGG | - | chr5_2:68611529-68611548 | None:intergenic | 40.0% | |
| GGTCATTTCCATGTGTATCT+AGG | + | chr5_2:68611825-68611844 | Msa0784200:intron | 40.0% | |
| GTGTATCTAGGAAACAATGG+AGG | + | chr5_2:68611837-68611856 | Msa0784200:intron | 40.0% | |
| GCCCACCAAAAACAGAAAAT+AGG | + | chr5_2:68611887-68611906 | Msa0784200:intron | 40.0% | |
| !!! | GGCCTATTTTCTGTTTTTGG+TGG | - | chr5_2:68611892-68611911 | None:intergenic | 40.0% |
| GAGATCTAAGTAGTGAGCTT+TGG | + | chr5_2:68612224-68612243 | Msa0784200:exon | 40.0% | |
| !! | GAAGGTGTTGATGCTTGCTA+TGG | + | chr5_2:68607158-68607177 | Msa0784200:CDS | 45.0% |
| GTGGAAAGCAATTCATGGGA+TGG | + | chr5_2:68607215-68607234 | Msa0784200:CDS | 45.0% | |
| CTTTCTCAGGTCTATGCTGA+AGG | + | chr5_2:68607400-68607419 | Msa0784200:intron | 45.0% | |
| AGCAATAACATCAGCTCCTC+CGG | - | chr5_2:68607440-68607459 | None:intergenic | 45.0% | |
| TGACCTTGCTAGTGAATACC+CGG | + | chr5_2:68607546-68607565 | Msa0784200:CDS | 45.0% | |
| TTACCGGGTATTCACTAGCA+AGG | - | chr5_2:68607552-68607571 | None:intergenic | 45.0% | |
| !! | CTGTTTGTTGTTAGCAGCTG+AGG | + | chr5_2:68607945-68607964 | Msa0784200:intron | 45.0% |
| ! | GCGGAATTTTCCCTCAGTAA+TGG | + | chr5_2:68608291-68608310 | Msa0784200:intron | 45.0% |
| ! | TTCCCTCAGTAATGGAAAGG+TGG | + | chr5_2:68608299-68608318 | Msa0784200:intron | 45.0% |
| GTTCCGTCAGTAATTACTGG+CGG | + | chr5_2:68608375-68608394 | Msa0784200:intron | 45.0% | |
| ATGTGAGACCCACGTGATTT+AGG | - | chr5_2:68608956-68608975 | None:intergenic | 45.0% | |
| ATCACGTGGGTCTCACATAT+TGG | + | chr5_2:68608958-68608977 | Msa0784200:intron | 45.0% | |
| AGAATTACCTAGTACCCTCC+TGG | - | chr5_2:68610418-68610437 | None:intergenic | 45.0% | |
| !!! | GCGGTTTGGTTCGATTTTGA+GGG | - | chr5_2:68611164-68611183 | None:intergenic | 45.0% |
| !!! | TGCGGTTTGGTTCGATTTTG+AGG | - | chr5_2:68611165-68611184 | None:intergenic | 45.0% |
| CTTGAAACTACGGATGTTCG+CGG | - | chr5_2:68611188-68611207 | None:intergenic | 45.0% | |
| !! | CCTTCCAAACCGGTTTTGTA+AGG | - | chr5_2:68611357-68611376 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGTTTGGA+AGG | + | chr5_2:68611354-68611373 | Msa0784200:intron | 45.0% |
| ACACTTCTCACCTTCCAAAC+CGG | - | chr5_2:68611367-68611386 | None:intergenic | 45.0% | |
| GGATAGATTTAGTCCCACGT+CGG | - | chr5_2:68611429-68611448 | None:intergenic | 45.0% | |
| CATTCACGCTTCAGATGCAT+TGG | - | chr5_2:68611496-68611515 | None:intergenic | 45.0% | |
| AGCCCAATAATAGACCGGAT+AGG | + | chr5_2:68611524-68611543 | Msa0784200:intron | 45.0% | |
| GAGCCTATCCGGTCTATTAT+TGG | - | chr5_2:68611530-68611549 | None:intergenic | 45.0% | |
| ACATGGTATCAGAGCCTATC+CGG | - | chr5_2:68611541-68611560 | None:intergenic | 45.0% | |
| AGGCCTCATAATTCGTGACA+TGG | - | chr5_2:68611558-68611577 | None:intergenic | 45.0% | |
| !! | CACTACCGCTGGAGTATTTT+TGG | + | chr5_2:68611804-68611823 | Msa0784200:intron | 45.0% |
| ! | ACCTTGGCTCTCATCTTGAA+CGG | - | chr5_2:68612042-68612061 | None:intergenic | 45.0% |
| AGTGGTGACATAGTTCACCT+TGG | - | chr5_2:68612058-68612077 | None:intergenic | 45.0% | |
| ! | AGTGGAAGAAGAAGCGTATG+AGG | + | chr5_2:68612169-68612188 | Msa0784200:intron | 45.0% |
| AGCGTATGAGGAGATTGAAG+AGG | + | chr5_2:68612181-68612200 | Msa0784200:CDS | 45.0% | |
| !! | AAATATTATTGATATATTTA+TGG | + | chr5_2:68608042-68608061 | Msa0784200:intron | 5.0% |
| !!! | ATTTTTTTAATATAATAGTT+CGG | - | chr5_2:68610252-68610271 | None:intergenic | 5.0% |
| !!! | TTTATTTTTTTTCAAAAAAT+GGG | - | chr5_2:68610312-68610331 | None:intergenic | 5.0% |
| !!! | ATTTATTTTTTTTCAAAAAA+TGG | - | chr5_2:68610313-68610332 | None:intergenic | 5.0% |
| !! | GGTGTTGATGCTTGCTATGG+AGG | + | chr5_2:68607161-68607180 | Msa0784200:CDS | 50.0% |
| ATAACATCAGCTCCTCCGGT+AGG | - | chr5_2:68607436-68607455 | None:intergenic | 50.0% | |
| GGGTATTCACTAGCAAGGTC+AGG | - | chr5_2:68607547-68607566 | None:intergenic | 50.0% | |
| !! | CGGTGTTATTTAGGCTGTCG+CGG | + | chr5_2:68607769-68607788 | Msa0784200:intron | 50.0% |
| ! | AGGGGGAAGTACATTACTGG+CGG | + | chr5_2:68608228-68608247 | Msa0784200:intron | 50.0% |
| TTAGCCTATGAGGTCCAACC+AGG | + | chr5_2:68610397-68610416 | Msa0784200:intron | 50.0% | |
| TTACCTAGTACCCTCCTGGT+TGG | - | chr5_2:68610414-68610433 | None:intergenic | 50.0% | |
| TGATCCAACCCAAACCGCAT+TGG | + | chr5_2:68611045-68611064 | Msa0784200:intron | 50.0% | |
| ! | CAAACCAATGCGGTTTGGGT+TGG | - | chr5_2:68611052-68611071 | None:intergenic | 50.0% |
| !! | CAACCCAAACCGCATTGGTT+TGG | + | chr5_2:68611050-68611069 | Msa0784200:intron | 50.0% |
| TGTTAGCAGCCAACACTCAG+TGG | - | chr5_2:68611450-68611469 | None:intergenic | 50.0% | |
| TCTTTCAGCGGCCATCAACT+AGG | + | chr5_2:68611997-68612016 | Msa0784200:intron | 50.0% | |
| ACCGTTCAAGATGAGAGCCA+AGG | + | chr5_2:68612038-68612057 | Msa0784200:CDS | 50.0% | |
| TTTAGGCTGTCGCGGTCTGA+AGG | + | chr5_2:68607777-68607796 | Msa0784200:intron | 55.0% | |
| CCTATGAGGTCCAACCAGGA+GGG | + | chr5_2:68610401-68610420 | Msa0784200:intron | 55.0% | |
| !! | GCGGTTTGGGTTGGATCAGT+TGG | - | chr5_2:68611043-68611062 | None:intergenic | 55.0% |
| AACTACGGATGTTCGCGGTG+CGG | - | chr5_2:68611183-68611202 | None:intergenic | 55.0% | |
| CGCTTCAGATGCATTGGGCT+GGG | - | chr5_2:68611490-68611509 | None:intergenic | 55.0% | |
| ACGCTTCAGATGCATTGGGC+TGG | - | chr5_2:68611491-68611510 | None:intergenic | 55.0% | |
| CAGCGGTAGTGAACTACCGA+TGG | - | chr5_2:68611795-68611814 | None:intergenic | 55.0% | |
| CATCGGTAGTTCACTACCGC+TGG | + | chr5_2:68611793-68611812 | Msa0784200:intron | 55.0% | |
| GAAGGTCCTGCTCGACCTAC+CGG | + | chr5_2:68607418-68607437 | Msa0784200:CDS | 60.0% | |
| GCCTATGAGGTCCAACCAGG+AGG | + | chr5_2:68610400-68610419 | Msa0784200:intron | 60.0% | |
| CCCTCCTGGTTGGACCTCAT+AGG | - | chr5_2:68610404-68610423 | None:intergenic | 60.0% | |
| !! | GGTCCAACCAGGAGGGTACT+AGG | + | chr5_2:68610408-68610427 | Msa0784200:intron | 60.0% |
| ! | TGGGCTGGGTTGAAGCGTGA+GGG | - | chr5_2:68611476-68611495 | None:intergenic | 60.0% |
| ! | TTGGGCTGGGTTGAAGCGTG+AGG | - | chr5_2:68611477-68611496 | None:intergenic | 60.0% |
| CGGATGTTCGCGGTGCGGTT+TGG | - | chr5_2:68611178-68611197 | None:intergenic | 65.0% | |
| ! | GGGCTGGGTTGAAGCGTGAG+GGG | - | chr5_2:68611475-68611494 | None:intergenic | 65.0% |
| GGTCCTGCTCGACCTACCGG+AGG | + | chr5_2:68607421-68607440 | Msa0784200:CDS | 70.0% | |
| GCTCCTCCGGTAGGTCGAGC+AGG | - | chr5_2:68607427-68607446 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 68607137 | 68612542 | 68607137 | ID=Msa0784200;Name=Msa0784200 |
| chr5_2 | mRNA | 68607137 | 68612542 | 68607137 | ID=Msa0784200-mRNA-1;Parent=Msa0784200;Name=Msa0784200-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.33|0.25|0.5|1|1|4|310|136 |
| chr5_2 | exon | 68607137 | 68607271 | 68607137 | ID=Msa0784200-mRNA-1:exon:20540;Parent=Msa0784200-mRNA-1 |
| chr5_2 | exon | 68607409 | 68607567 | 68607409 | ID=Msa0784200-mRNA-1:exon:20541;Parent=Msa0784200-mRNA-1 |
| chr5_2 | exon | 68612005 | 68612059 | 68612005 | ID=Msa0784200-mRNA-1:exon:20542;Parent=Msa0784200-mRNA-1 |
| chr5_2 | exon | 68612171 | 68612542 | 68612171 | ID=Msa0784200-mRNA-1:exon:20543;Parent=Msa0784200-mRNA-1 |
| chr5_2 | CDS | 68607137 | 68607271 | 68607137 | ID=Msa0784200-mRNA-1:cds;Parent=Msa0784200-mRNA-1 |
| chr5_2 | CDS | 68607409 | 68607567 | 68607409 | ID=Msa0784200-mRNA-1:cds;Parent=Msa0784200-mRNA-1 |
| chr5_2 | CDS | 68612005 | 68612059 | 68612005 | ID=Msa0784200-mRNA-1:cds;Parent=Msa0784200-mRNA-1 |
| chr5_2 | CDS | 68612171 | 68612232 | 68612171 | ID=Msa0784200-mRNA-1:cds;Parent=Msa0784200-mRNA-1 |
| chr5_2 | three_prime_UTR | 68612233 | 68612542 | 68612233 | ID=Msa0784200-mRNA-1:three_prime_utr;Parent=Msa0784200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
