AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1186210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1186210 MtrunA17_Chr8g0352531 91.351 185 4 2 1 179 1 179 1.07e-109 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCATTATGTCCTTCT+AGG 0.088496 8_1:+24272709 None:intergenic
TTTGGAATTGGCTTGTAAAT+TGG 0.156604 8_1:+24272420 None:intergenic
CTTTGGAATAGGCTTGTAAA+TGG 0.212935 8_1:+24272515 None:intergenic
TTTGGAATAGGCTTGTAAAT+TGG 0.225594 8_1:+24272468 None:intergenic
TTTGGAATAGGCTTGTAAAT+TGG 0.233261 8_1:+24272390 None:intergenic
GGAATTGGTTTCTTGAATAT+TGG 0.237384 8_1:+24272627 None:intergenic
TTATAGATTGGAACGTATTT+TGG 0.239696 8_1:+24272558 None:intergenic
TTGTGAATAGGTTTATAAAA+TGG 0.240012 8_1:+24272606 None:intergenic
ATTGGAACAGGCTTGTAAAT+TGG 0.276520 8_1:+24272438 None:intergenic
ATTGGAACAGGCTTGTAAAT+TGG 0.276520 8_1:+24272486 None:intergenic
TTTGGTATAGGTTTGTAAAT+TGG 0.283056 8_1:+24272576 None:intergenic
ATTGGAATTACCTTTGGAAT+TGG 0.313795 8_1:+24272408 None:intergenic
ATTGGAATTACCTTTGGAAT+AGG 0.316743 8_1:+24272504 None:intergenic
ATTGGAATGTCTTTGTGAAT+AGG 0.322130 8_1:+24272594 None:intergenic
CAATATGCAAAGGCCACTTT+TGG 0.329589 8_1:-24273625 Msa1186210:CDS
ATTGGAATAACCTTTGGAAT+AGG 0.333599 8_1:+24272456 None:intergenic
ATGGGAACTACCTTTGGAAT+AGG 0.351240 8_1:+24272378 None:intergenic
ATAGGCTTGTAAATGGGAAT+TGG 0.370906 8_1:+24272522 None:intergenic
TTTACAATGGGAACTACCTT+TGG 0.372794 8_1:+24272372 None:intergenic
CAAAAGTGGCCTTTGCATAT+TGG 0.376190 8_1:+24273626 None:intergenic
GTAGCAAGAAATGATCCTTC+AGG 0.392442 8_1:-24273549 Msa1186210:intron
ATAGGTTTATAAAATGGAAT+TGG 0.398934 8_1:+24272612 None:intergenic
TTGTAAATTGGAATAACCTT+TGG 0.409850 8_1:+24272450 None:intergenic
TTGTAAATTGGAATTACCTT+TGG 0.416670 8_1:+24272402 None:intergenic
TTGTAAATTGGAATTACCTT+TGG 0.416670 8_1:+24272498 None:intergenic
TAATGGATTGGCTTTACAAT+GGG 0.428101 8_1:+24272360 None:intergenic
ATTGGCTTGTAAATTGGAAC+AGG 0.429206 8_1:+24272426 None:intergenic
ATAGGCTTGTAAATTGGAAC+AGG 0.440807 8_1:+24272474 None:intergenic
ATGGGAATTGGTTTGTGGAT+AGG 0.448083 8_1:+24272534 None:intergenic
GCTTCCCATCTGTGTTCACT+TGG 0.449323 8_1:+24272760 None:intergenic
GCATGATAATCTTAATGGAT+TGG 0.454921 8_1:+24272348 None:intergenic
TTGTGGATAGGCTTATAGAT+TGG 0.461177 8_1:+24272546 None:intergenic
GCAACAAAGACAAACCTAGA+AGG 0.464842 8_1:-24272723 Msa1186210:CDS
ATTTATACTATAAGCTAGGT+AGG 0.466869 8_1:+24273772 None:intergenic
TGTAAATGGGAATTGGTTTG+TGG 0.491139 8_1:+24272529 None:intergenic
TTTGGAATAGGCTTGTAAAT+GGG 0.493642 8_1:+24272516 None:intergenic
CATTATTTATACTATAAGCT+AGG 0.531988 8_1:+24273768 None:intergenic
TTAATGGATTGGCTTTACAA+TGG 0.537191 8_1:+24272359 None:intergenic
GGAAACCAAGTGAACACAGA+TGG 0.546430 8_1:-24272765 Msa1186210:CDS
TTTATACTATAAGCTAGGTA+GGG 0.547635 8_1:+24273773 None:intergenic
CATCTAAAACACAAACTCAA+AGG 0.559830 8_1:-24272666 Msa1186210:CDS
AAGAGTGGTTTAGAAGTGAA+AGG 0.560442 8_1:+24273692 None:intergenic
CATTTACAAGCCTATTCCAA+AGG 0.578514 8_1:-24272514 Msa1186210:CDS
GAAACCAAGTGAACACAGAT+GGG 0.582541 8_1:-24272764 Msa1186210:CDS
GGAACCCAGAAGGCCAAAAG+TGG 0.583318 8_1:+24273612 None:intergenic
AATTTACAAGCCTATTCCAA+AGG 0.591786 8_1:-24272466 Msa1186210:CDS
AATTTACAAGCCAATTCCAA+AGG 0.595922 8_1:-24272418 Msa1186210:CDS
AAGGTGACAAGGAGCAACAA+AGG 0.600910 8_1:+24273591 None:intergenic
TAGCATAACAGAAGGTGACA+AGG 0.606710 8_1:+24273580 None:intergenic
CAAGGCCACAAAAGAAAGAG+TGG 0.607186 8_1:+24273677 None:intergenic
TGGGAAGCTTGCAAATGAAG+AGG 0.610090 8_1:-24272745 Msa1186210:CDS
GAGCAACAAAGGAACCCAGA+AGG 0.618628 8_1:+24273602 None:intergenic
AATTTACAAGCCTATTCCAA+AGG 0.618821 8_1:-24272388 Msa1186210:CDS
GAAAAGCTTCCAATATGCAA+AGG 0.633003 8_1:-24273635 Msa1186210:CDS
CATGATTGAGAAATTCAACA+AGG 0.638495 8_1:+24273659 None:intergenic
AACAGAAGTAGCATAACAGA+AGG 0.639211 8_1:+24273572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATAAAATTTTATTTGA+AGG - chr8_1:24272999-24273018 Msa1186210:intron 10.0%
!!! ATAATTGAGTTTTTAATAAA+AGG + chr8_1:24273049-24273068 None:intergenic 10.0%
!!! TTGAATAAAATTTTATTTGA+AGG - chr8_1:24272999-24273018 Msa1186210:intron 10.0%
!!! ATAATTGAGTTTTTAATAAA+AGG + chr8_1:24273049-24273068 None:intergenic 10.0%
!! TACATATATTGTACATTTAT+AGG + chr8_1:24272638-24272657 None:intergenic 15.0%
!! AAAAAAAAAAAACACAAACT+TGG - chr8_1:24273294-24273313 Msa1186210:intron 15.0%
!! TACATATATTGTACATTTAT+AGG + chr8_1:24272638-24272657 None:intergenic 15.0%
!! AAAAAAAAAAAACACAAACT+TGG - chr8_1:24273294-24273313 Msa1186210:intron 15.0%
!! CATTATTTATACTATAAGCT+AGG + chr8_1:24272373-24272392 None:intergenic 20.0%
!! ACATTTATATTTCCCTTATT+TGG - chr8_1:24272724-24272743 Msa1186210:CDS 20.0%
!! AATGAAGAAGAAAAATTCAA+AGG - chr8_1:24273442-24273461 Msa1186210:intron 20.0%
!! ATAGGTTTATAAAATGGAAT+TGG + chr8_1:24273529-24273548 None:intergenic 20.0%
!! TTGTGAATAGGTTTATAAAA+TGG + chr8_1:24273535-24273554 None:intergenic 20.0%
!! CATTATTTATACTATAAGCT+AGG + chr8_1:24272373-24272392 None:intergenic 20.0%
!! ACATTTATATTTCCCTTATT+TGG - chr8_1:24272724-24272743 Msa1186210:CDS 20.0%
!! AATGAAGAAGAAAAATTCAA+AGG - chr8_1:24273442-24273461 Msa1186210:intron 20.0%
!! ATAGGTTTATAAAATGGAAT+TGG + chr8_1:24273529-24273548 None:intergenic 20.0%
!! TTGTGAATAGGTTTATAAAA+TGG + chr8_1:24273535-24273554 None:intergenic 20.0%
! TTTATACTATAAGCTAGGTA+GGG + chr8_1:24272368-24272387 None:intergenic 25.0%
! ATTTATACTATAAGCTAGGT+AGG + chr8_1:24272369-24272388 None:intergenic 25.0%
! AGTAGTAACTATTCATAGAT+TGG - chr8_1:24272673-24272692 Msa1186210:CDS 25.0%
! GTAGTAACTATTCATAGATT+GGG - chr8_1:24272674-24272693 Msa1186210:CDS 25.0%
!!! CTCTCTTTTTTACCAAATAA+GGG + chr8_1:24272739-24272758 None:intergenic 25.0%
!!! TCTCTCTTTTTTACCAAATA+AGG + chr8_1:24272740-24272759 None:intergenic 25.0%
!! TTTTATGACTAATCTCTGTT+AGG + chr8_1:24273237-24273256 None:intergenic 25.0%
! TTACTCAAGTTATAAACTCT+AGG + chr8_1:24273335-24273354 None:intergenic 25.0%
!!! GTTTCTTGAATATTGGTTTT+TGG + chr8_1:24273507-24273526 None:intergenic 25.0%
! TTTGGTATAGGTTTGTAAAT+TGG + chr8_1:24273565-24273584 None:intergenic 25.0%
!! TTATAGATTGGAACGTATTT+TGG + chr8_1:24273583-24273602 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr8_1:24273643-24273662 None:intergenic 25.0%
! TTGTAAATTGGAATAACCTT+TGG + chr8_1:24273691-24273710 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr8_1:24273643-24273662 None:intergenic 25.0%
! TTTATACTATAAGCTAGGTA+GGG + chr8_1:24272368-24272387 None:intergenic 25.0%
! ATTTATACTATAAGCTAGGT+AGG + chr8_1:24272369-24272388 None:intergenic 25.0%
! AGTAGTAACTATTCATAGAT+TGG - chr8_1:24272673-24272692 Msa1186210:CDS 25.0%
! GTAGTAACTATTCATAGATT+GGG - chr8_1:24272674-24272693 Msa1186210:CDS 25.0%
!!! CTCTCTTTTTTACCAAATAA+GGG + chr8_1:24272739-24272758 None:intergenic 25.0%
!!! TCTCTCTTTTTTACCAAATA+AGG + chr8_1:24272740-24272759 None:intergenic 25.0%
!! TTTTATGACTAATCTCTGTT+AGG + chr8_1:24273237-24273256 None:intergenic 25.0%
! TTACTCAAGTTATAAACTCT+AGG + chr8_1:24273335-24273354 None:intergenic 25.0%
!!! GTTTCTTGAATATTGGTTTT+TGG + chr8_1:24273507-24273526 None:intergenic 25.0%
! TTTGGTATAGGTTTGTAAAT+TGG + chr8_1:24273565-24273584 None:intergenic 25.0%
!! TTATAGATTGGAACGTATTT+TGG + chr8_1:24273583-24273602 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr8_1:24273643-24273662 None:intergenic 25.0%
! TTGTAAATTGGAATAACCTT+TGG + chr8_1:24273691-24273710 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr8_1:24273643-24273662 None:intergenic 25.0%
CATGATTGAGAAATTCAACA+AGG + chr8_1:24272482-24272501 None:intergenic 30.0%
!!! GGTTAGTTTTTGTTTACTCT+TGG - chr8_1:24272695-24272714 Msa1186210:CDS 30.0%
!! GTTTTTGTTTACTCTTGGTA+TGG - chr8_1:24272700-24272719 Msa1186210:CDS 30.0%
AAGAGAGAGAGAGAAATTTA+TGG - chr8_1:24272752-24272771 Msa1186210:CDS 30.0%
GCTTGAAAATATCATTGTTC+AGG - chr8_1:24272786-24272805 Msa1186210:intron 30.0%
TCCTCAAAGTCATGTTTAAA+TGG - chr8_1:24272848-24272867 Msa1186210:intron 30.0%
ACCATTTAAACATGACTTTG+AGG + chr8_1:24272852-24272871 None:intergenic 30.0%
TTAGGAAATTTGACTGATCA+TGG + chr8_1:24273219-24273238 None:intergenic 30.0%
! TAATTTTGCATTTCTTGTGC+AGG - chr8_1:24273352-24273371 Msa1186210:intron 30.0%
! CATCTAAAACACAAACTCAA+AGG - chr8_1:24273472-24273491 Msa1186210:intron 30.0%
! GGAATTGGTTTCTTGAATAT+TGG + chr8_1:24273514-24273533 None:intergenic 30.0%
ATTGGAATGTCTTTGTGAAT+AGG + chr8_1:24273547-24273566 None:intergenic 30.0%
!!! ATTGGAACGTATTTTGGTAT+AGG + chr8_1:24273577-24273596 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+GGG + chr8_1:24273625-24273644 None:intergenic 30.0%
!! ATTGGAATTACCTTTGGAAT+AGG + chr8_1:24273637-24273656 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr8_1:24273625-24273644 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr8_1:24273672-24273691 Msa1186210:five_prime_UTR 30.0%
!! ATTGGAATAACCTTTGGAAT+AGG + chr8_1:24273685-24273704 None:intergenic 30.0%
!! TTTGGAATTGGCTTGTAAAT+TGG + chr8_1:24273721-24273740 None:intergenic 30.0%
AATTTACAAGCCAATTCCAA+AGG - chr8_1:24273720-24273739 Msa1186210:five_prime_UTR 30.0%
!! ATTGGAATTACCTTTGGAAT+TGG + chr8_1:24273637-24273656 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr8_1:24273625-24273644 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr8_1:24273672-24273691 Msa1186210:five_prime_UTR 30.0%
!! TAATGGATTGGCTTTACAAT+GGG + chr8_1:24273781-24273800 None:intergenic 30.0%
!! TTAATGGATTGGCTTTACAA+TGG + chr8_1:24273782-24273801 None:intergenic 30.0%
CATGATTGAGAAATTCAACA+AGG + chr8_1:24272482-24272501 None:intergenic 30.0%
!!! GGTTAGTTTTTGTTTACTCT+TGG - chr8_1:24272695-24272714 Msa1186210:CDS 30.0%
!! GTTTTTGTTTACTCTTGGTA+TGG - chr8_1:24272700-24272719 Msa1186210:CDS 30.0%
AAGAGAGAGAGAGAAATTTA+TGG - chr8_1:24272752-24272771 Msa1186210:CDS 30.0%
GCTTGAAAATATCATTGTTC+AGG - chr8_1:24272786-24272805 Msa1186210:intron 30.0%
TCCTCAAAGTCATGTTTAAA+TGG - chr8_1:24272848-24272867 Msa1186210:intron 30.0%
ACCATTTAAACATGACTTTG+AGG + chr8_1:24272852-24272871 None:intergenic 30.0%
TTAGGAAATTTGACTGATCA+TGG + chr8_1:24273219-24273238 None:intergenic 30.0%
! TAATTTTGCATTTCTTGTGC+AGG - chr8_1:24273352-24273371 Msa1186210:intron 30.0%
! CATCTAAAACACAAACTCAA+AGG - chr8_1:24273472-24273491 Msa1186210:intron 30.0%
! GGAATTGGTTTCTTGAATAT+TGG + chr8_1:24273514-24273533 None:intergenic 30.0%
ATTGGAATGTCTTTGTGAAT+AGG + chr8_1:24273547-24273566 None:intergenic 30.0%
!!! ATTGGAACGTATTTTGGTAT+AGG + chr8_1:24273577-24273596 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+GGG + chr8_1:24273625-24273644 None:intergenic 30.0%
!! ATTGGAATTACCTTTGGAAT+AGG + chr8_1:24273637-24273656 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr8_1:24273625-24273644 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr8_1:24273672-24273691 Msa1186210:five_prime_UTR 30.0%
!! ATTGGAATAACCTTTGGAAT+AGG + chr8_1:24273685-24273704 None:intergenic 30.0%
!! TTTGGAATTGGCTTGTAAAT+TGG + chr8_1:24273721-24273740 None:intergenic 30.0%
AATTTACAAGCCAATTCCAA+AGG - chr8_1:24273720-24273739 Msa1186210:five_prime_UTR 30.0%
!! ATTGGAATTACCTTTGGAAT+TGG + chr8_1:24273637-24273656 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr8_1:24273625-24273644 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr8_1:24273672-24273691 Msa1186210:five_prime_UTR 30.0%
!! TAATGGATTGGCTTTACAAT+GGG + chr8_1:24273781-24273800 None:intergenic 30.0%
!! TTAATGGATTGGCTTTACAA+TGG + chr8_1:24273782-24273801 None:intergenic 30.0%
AAGAGTGGTTTAGAAGTGAA+AGG + chr8_1:24272449-24272468 None:intergenic 35.0%
! CTAAACCACTCTTTCTTTTG+TGG - chr8_1:24272456-24272475 Msa1186210:CDS 35.0%
GAAAAGCTTCCAATATGCAA+AGG - chr8_1:24272503-24272522 Msa1186210:CDS 35.0%
AACAGAAGTAGCATAACAGA+AGG + chr8_1:24272569-24272588 None:intergenic 35.0%
AAAATGACTCACAAACCTGA+AGG + chr8_1:24272607-24272626 None:intergenic 35.0%
ACTATCATCATCATCACACA+AGG + chr8_1:24272896-24272915 None:intergenic 35.0%
CTTCTTCATTATGTCCTTCT+AGG + chr8_1:24273432-24273451 None:intergenic 35.0%
TTGTGGATAGGCTTATAGAT+TGG + chr8_1:24273595-24273614 None:intergenic 35.0%
!! TGTAAATGGGAATTGGTTTG+TGG + chr8_1:24273612-24273631 None:intergenic 35.0%
ATAGGCTTGTAAATGGGAAT+TGG + chr8_1:24273619-24273638 None:intergenic 35.0%
!! CTTTGGAATAGGCTTGTAAA+TGG + chr8_1:24273626-24273645 None:intergenic 35.0%
CATTTACAAGCCTATTCCAA+AGG - chr8_1:24273624-24273643 Msa1186210:CDS 35.0%
ATTGGAACAGGCTTGTAAAT+TGG + chr8_1:24273655-24273674 None:intergenic 35.0%
ATAGGCTTGTAAATTGGAAC+AGG + chr8_1:24273667-24273686 None:intergenic 35.0%
ATTGGAACAGGCTTGTAAAT+TGG + chr8_1:24273655-24273674 None:intergenic 35.0%
!! ATTGGCTTGTAAATTGGAAC+AGG + chr8_1:24273715-24273734 None:intergenic 35.0%
TTTACAATGGGAACTACCTT+TGG + chr8_1:24273769-24273788 None:intergenic 35.0%
AAGAGTGGTTTAGAAGTGAA+AGG + chr8_1:24272449-24272468 None:intergenic 35.0%
! CTAAACCACTCTTTCTTTTG+TGG - chr8_1:24272456-24272475 Msa1186210:CDS 35.0%
GAAAAGCTTCCAATATGCAA+AGG - chr8_1:24272503-24272522 Msa1186210:CDS 35.0%
AACAGAAGTAGCATAACAGA+AGG + chr8_1:24272569-24272588 None:intergenic 35.0%
AAAATGACTCACAAACCTGA+AGG + chr8_1:24272607-24272626 None:intergenic 35.0%
ACTATCATCATCATCACACA+AGG + chr8_1:24272896-24272915 None:intergenic 35.0%
CTTCTTCATTATGTCCTTCT+AGG + chr8_1:24273432-24273451 None:intergenic 35.0%
TTGTGGATAGGCTTATAGAT+TGG + chr8_1:24273595-24273614 None:intergenic 35.0%
!! TGTAAATGGGAATTGGTTTG+TGG + chr8_1:24273612-24273631 None:intergenic 35.0%
ATAGGCTTGTAAATGGGAAT+TGG + chr8_1:24273619-24273638 None:intergenic 35.0%
!! CTTTGGAATAGGCTTGTAAA+TGG + chr8_1:24273626-24273645 None:intergenic 35.0%
CATTTACAAGCCTATTCCAA+AGG - chr8_1:24273624-24273643 Msa1186210:CDS 35.0%
ATTGGAACAGGCTTGTAAAT+TGG + chr8_1:24273655-24273674 None:intergenic 35.0%
ATAGGCTTGTAAATTGGAAC+AGG + chr8_1:24273667-24273686 None:intergenic 35.0%
ATTGGAACAGGCTTGTAAAT+TGG + chr8_1:24273655-24273674 None:intergenic 35.0%
!! ATTGGCTTGTAAATTGGAAC+AGG + chr8_1:24273715-24273734 None:intergenic 35.0%
TTTACAATGGGAACTACCTT+TGG + chr8_1:24273769-24273788 None:intergenic 35.0%
CAAAAGTGGCCTTTGCATAT+TGG + chr8_1:24272515-24272534 None:intergenic 40.0%
!! CAATATGCAAAGGCCACTTT+TGG - chr8_1:24272513-24272532 Msa1186210:CDS 40.0%
TAGCATAACAGAAGGTGACA+AGG + chr8_1:24272561-24272580 None:intergenic 40.0%
GTAGCAAGAAATGATCCTTC+AGG - chr8_1:24272589-24272608 Msa1186210:CDS 40.0%
TCAAACCAATACATGCACAC+CGG - chr8_1:24273104-24273123 Msa1186210:intron 40.0%
TACTTGAACCAATGTAGTGC+CGG + chr8_1:24273126-24273145 None:intergenic 40.0%
GAAACCAAGTGAACACAGAT+GGG - chr8_1:24273374-24273393 Msa1186210:intron 40.0%
GCAACAAAGACAAACCTAGA+AGG - chr8_1:24273415-24273434 Msa1186210:intron 40.0%
!! ATGGGAATTGGTTTGTGGAT+AGG + chr8_1:24273607-24273626 None:intergenic 40.0%
!! ATGGGAACTACCTTTGGAAT+AGG + chr8_1:24273763-24273782 None:intergenic 40.0%
CAAAAGTGGCCTTTGCATAT+TGG + chr8_1:24272515-24272534 None:intergenic 40.0%
!! CAATATGCAAAGGCCACTTT+TGG - chr8_1:24272513-24272532 Msa1186210:CDS 40.0%
TAGCATAACAGAAGGTGACA+AGG + chr8_1:24272561-24272580 None:intergenic 40.0%
GTAGCAAGAAATGATCCTTC+AGG - chr8_1:24272589-24272608 Msa1186210:CDS 40.0%
TCAAACCAATACATGCACAC+CGG - chr8_1:24273104-24273123 Msa1186210:intron 40.0%
TACTTGAACCAATGTAGTGC+CGG + chr8_1:24273126-24273145 None:intergenic 40.0%
GAAACCAAGTGAACACAGAT+GGG - chr8_1:24273374-24273393 Msa1186210:intron 40.0%
GCAACAAAGACAAACCTAGA+AGG - chr8_1:24273415-24273434 Msa1186210:intron 40.0%
!! ATGGGAATTGGTTTGTGGAT+AGG + chr8_1:24273607-24273626 None:intergenic 40.0%
!! ATGGGAACTACCTTTGGAAT+AGG + chr8_1:24273763-24273782 None:intergenic 40.0%
CAAGGCCACAAAAGAAAGAG+TGG + chr8_1:24272464-24272483 None:intergenic 45.0%
AAGGTGACAAGGAGCAACAA+AGG + chr8_1:24272550-24272569 None:intergenic 45.0%
ACAAACTTGGCCATTGAGCT+AGG - chr8_1:24273307-24273326 Msa1186210:intron 45.0%
GGAAACCAAGTGAACACAGA+TGG - chr8_1:24273373-24273392 Msa1186210:intron 45.0%
TGGGAAGCTTGCAAATGAAG+AGG - chr8_1:24273393-24273412 Msa1186210:intron 45.0%
CAAGGCCACAAAAGAAAGAG+TGG + chr8_1:24272464-24272483 None:intergenic 45.0%
AAGGTGACAAGGAGCAACAA+AGG + chr8_1:24272550-24272569 None:intergenic 45.0%
ACAAACTTGGCCATTGAGCT+AGG - chr8_1:24273307-24273326 Msa1186210:intron 45.0%
GGAAACCAAGTGAACACAGA+TGG - chr8_1:24273373-24273392 Msa1186210:intron 45.0%
TGGGAAGCTTGCAAATGAAG+AGG - chr8_1:24273393-24273412 Msa1186210:intron 45.0%
!!! AAAGGCCACTTTTGGCCTTC+TGG - chr8_1:24272521-24272540 Msa1186210:CDS 50.0%
!!! AAGGCCACTTTTGGCCTTCT+GGG - chr8_1:24272522-24272541 Msa1186210:CDS 50.0%
GAGCAACAAAGGAACCCAGA+AGG + chr8_1:24272539-24272558 None:intergenic 50.0%
!! TAGTGCCGGTGTGCATGTAT+TGG + chr8_1:24273112-24273131 None:intergenic 50.0%
ACTCTAGGTGCCTAGCTCAA+TGG + chr8_1:24273320-24273339 None:intergenic 50.0%
GCTTCCCATCTGTGTTCACT+TGG + chr8_1:24273381-24273400 None:intergenic 50.0%
!!! AAAGGCCACTTTTGGCCTTC+TGG - chr8_1:24272521-24272540 Msa1186210:CDS 50.0%
!!! AAGGCCACTTTTGGCCTTCT+GGG - chr8_1:24272522-24272541 Msa1186210:CDS 50.0%
GAGCAACAAAGGAACCCAGA+AGG + chr8_1:24272539-24272558 None:intergenic 50.0%
!! TAGTGCCGGTGTGCATGTAT+TGG + chr8_1:24273112-24273131 None:intergenic 50.0%
ACTCTAGGTGCCTAGCTCAA+TGG + chr8_1:24273320-24273339 None:intergenic 50.0%
GCTTCCCATCTGTGTTCACT+TGG + chr8_1:24273381-24273400 None:intergenic 50.0%
GGAACCCAGAAGGCCAAAAG+TGG + chr8_1:24272529-24272548 None:intergenic 55.0%
CATGCACACCGGCACTACAT+TGG - chr8_1:24273115-24273134 Msa1186210:intron 55.0%
GGAACCCAGAAGGCCAAAAG+TGG + chr8_1:24272529-24272548 None:intergenic 55.0%
CATGCACACCGGCACTACAT+TGG - chr8_1:24273115-24273134 Msa1186210:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 24272359 24273801 24272359 ID=Msa1186210;Name=Msa1186210
chr8_1 mRNA 24272359 24273801 24272359 ID=Msa1186210-mRNA-1;Parent=Msa1186210;Name=Msa1186210-mRNA-1;_AED=0.16;_eAED=0.17;_QI=140|1|0.5|1|1|1|2|0|179
chr8_1 exon 24272359 24272786 24272359 ID=Msa1186210-mRNA-1:exon:8838;Parent=Msa1186210-mRNA-1
chr8_1 exon 24273550 24273801 24273550 ID=Msa1186210-mRNA-1:exon:8837;Parent=Msa1186210-mRNA-1
chr8_1 five_prime_UTR 24273662 24273801 24273662 ID=Msa1186210-mRNA-1:five_prime_utr;Parent=Msa1186210-mRNA-1
chr8_1 CDS 24273550 24273661 24273550 ID=Msa1186210-mRNA-1:cds;Parent=Msa1186210-mRNA-1
chr8_1 CDS 24272359 24272786 24272359 ID=Msa1186210-mRNA-1:cds;Parent=Msa1186210-mRNA-1
Gene Sequence

>Msa1186210

ATGAGAAAAGCTTCCAATATGCAAAGGCCACTTTTGGCCTTCTGGGTTCCTTTGTTGCTCCTTGTCACCTTCTGTTATGCTACTTCTGTTGTAGCAAGAAATGATCCTTCAGGAAACCAAGTGAACACAGATGGGAAGCTTGCAAATGAAGAGGCAACAAAGACAAACCTAGAAGGACATAATGAAGAAGAAAAATTCAAAGGATTTTTTCATCTAAAACACAAACTCAAAGGATATTTTCACCAAAAACCAATATTCAAGAAACCAATTCCATTTTATAAACCTATTCACAAAGACATTCCAATTTACAAACCTATACCAAAATACGTTCCAATCTATAAGCCTATCCACAAACCAATTCCCATTTACAAGCCTATTCCAAAGGTAATTCCAATTTACAAGCCTGTTCCAATTTACAAGCCTATTCCAAAGGTTATTCCAATTTACAAGCCTGTTCCAATTTACAAGCCAATTCCAAAGGTAATTCCAATTTACAAGCCTATTCCAAAGGTAGTTCCCATTGTAAAGCCAATCCATTAA

Protein sequence

>Msa1186210

MRKASNMQRPLLAFWVPLLLLVTFCYATSVVARNDPSGNQVNTDGKLANEEATKTNLEGHNEEEKFKGFFHLKHKLKGYFHQKPIFKKPIPFYKPIHKDIPIYKPIPKYVPIYKPIHKPIPIYKPIPKVIPIYKPVPIYKPIPKVIPIYKPVPIYKPIPKVIPIYKPIPKVVPIVKPIH*