AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0517300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517300 MtrunA17_Chr8g0352531 91.892 185 3 2 1 179 1 179 8.20e-110 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 57 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCATTATGTCCTTCT+AGG 0.088496 3_4:+68859651 None:intergenic
TTTGGAATTGGCTTGTAAAT+TGG 0.156604 3_4:+68859362 None:intergenic
CTTTGGAATAGGCTTGTAAA+TGG 0.212935 3_4:+68859457 None:intergenic
TTTGGAATAGGCTTGTAAAT+TGG 0.225594 3_4:+68859410 None:intergenic
TTTGGAATAGGCTTGTAAAT+TGG 0.233261 3_4:+68859332 None:intergenic
GGAATTGGTTTCTTGAATAT+TGG 0.237384 3_4:+68859569 None:intergenic
TTATAGATTGGAACGTATTT+TGG 0.239696 3_4:+68859500 None:intergenic
TTGTGAATAGGTTTATAAAA+TGG 0.240012 3_4:+68859548 None:intergenic
ATTGGAACAGGCTTGTAAAT+TGG 0.276520 3_4:+68859380 None:intergenic
ATTGGAACAGGCTTGTAAAT+TGG 0.276520 3_4:+68859428 None:intergenic
TTTGGTATAGGTTTGTAAAT+TGG 0.283056 3_4:+68859518 None:intergenic
ATTGGAATTACCTTTGGAAT+TGG 0.313795 3_4:+68859350 None:intergenic
ATTGGAATTACCTTTGGAAT+AGG 0.316743 3_4:+68859446 None:intergenic
ATTGGAATGTCTTTGTGAAT+AGG 0.322130 3_4:+68859536 None:intergenic
CAAAAGTGGCCTTTGCAAAT+TGG 0.325296 3_4:+68860569 None:intergenic
CAATTTGCAAAGGCCACTTT+TGG 0.327118 3_4:-68860568 Msa0517300:CDS
ATTGGAATAACCTTTGGAAT+AGG 0.333599 3_4:+68859398 None:intergenic
ATGGGAACTACCTTTGGAAT+AGG 0.351240 3_4:+68859320 None:intergenic
ATAGGCTTGTAAATGGGAAT+TGG 0.370906 3_4:+68859464 None:intergenic
TTTACAATGGGAACTACCTT+TGG 0.372794 3_4:+68859314 None:intergenic
GTAGCAAGAAATGATCCTTC+AGG 0.392442 3_4:-68860492 Msa0517300:intron
ATAGGTTTATAAAATGGAAT+TGG 0.398934 3_4:+68859554 None:intergenic
TTGTAAATTGGAATAACCTT+TGG 0.409850 3_4:+68859392 None:intergenic
AGAGAAATTGTTTGAAGACT+TGG 0.411214 3_4:+68860662 None:intergenic
TTGTAAATTGGAATTACCTT+TGG 0.416670 3_4:+68859344 None:intergenic
TTGTAAATTGGAATTACCTT+TGG 0.416670 3_4:+68859440 None:intergenic
TAATGGATTGGCTTTACAAT+GGG 0.428101 3_4:+68859302 None:intergenic
ATTGGCTTGTAAATTGGAAC+AGG 0.429206 3_4:+68859368 None:intergenic
ATAGGCTTGTAAATTGGAAC+AGG 0.440807 3_4:+68859416 None:intergenic
ATGGGAATTGGTTTGTGGAT+AGG 0.448083 3_4:+68859476 None:intergenic
GCTTCCCATCTGTGTTCACT+TGG 0.449323 3_4:+68859702 None:intergenic
GCATGATAATCTTAATGGAT+TGG 0.454921 3_4:+68859290 None:intergenic
TTGTGGATAGGCTTATAGAT+TGG 0.461177 3_4:+68859488 None:intergenic
GCAACAAAGACAAACCTAGA+AGG 0.464842 3_4:-68859665 Msa0517300:CDS
ATTTATACTATAAGCTAGGT+AGG 0.466869 3_4:+68860715 None:intergenic
TGTAAATGGGAATTGGTTTG+TGG 0.491139 3_4:+68859471 None:intergenic
TTTGGAATAGGCTTGTAAAT+GGG 0.493642 3_4:+68859458 None:intergenic
AACAGAAGTAGCATAACAAA+AGG 0.510420 3_4:+68860515 None:intergenic
CATTATTTATACTATAAGCT+AGG 0.531988 3_4:+68860711 None:intergenic
TTAATGGATTGGCTTTACAA+TGG 0.537191 3_4:+68859301 None:intergenic
GGAAACCAAGTGAACACAGA+TGG 0.546430 3_4:-68859707 Msa0517300:CDS
TTTATACTATAAGCTAGGTA+GGG 0.547635 3_4:+68860716 None:intergenic
CATCTAAAACACAAACTCAA+AGG 0.559830 3_4:-68859608 Msa0517300:CDS
AAGAGTGGTTTAGAAGTGAA+AGG 0.560442 3_4:+68860634 None:intergenic
CATTTACAAGCCTATTCCAA+AGG 0.578514 3_4:-68859456 Msa0517300:CDS
GAAACCAAGTGAACACAGAT+GGG 0.582541 3_4:-68859706 Msa0517300:CDS
GGAACCCAGAAGGCCAAAAG+TGG 0.583318 3_4:+68860555 None:intergenic
AATTTACAAGCCTATTCCAA+AGG 0.591786 3_4:-68859408 Msa0517300:CDS
AATTTACAAGCCAATTCCAA+AGG 0.595922 3_4:-68859360 Msa0517300:CDS
GAAAAGCTTCCAATTTGCAA+AGG 0.597703 3_4:-68860578 Msa0517300:CDS
AAGGTGACAAGGAGCAACAA+AGG 0.600910 3_4:+68860534 None:intergenic
TGGGAAGCTTGCAAATGAAG+AGG 0.610090 3_4:-68859687 Msa0517300:CDS
GAGCAACAAAGGAACCCAGA+AGG 0.618628 3_4:+68860545 None:intergenic
AATTTACAAGCCTATTCCAA+AGG 0.618821 3_4:-68859330 Msa0517300:CDS
CATAATTGAGAAATTCAACA+AGG 0.632593 3_4:+68860602 None:intergenic
ACAAGGCCACAAAAGAAGAG+TGG 0.635287 3_4:+68860619 None:intergenic
TAGCATAACAAAAGGTGACA+AGG 0.637763 3_4:+68860523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATAAAATTTTATTTGA+AGG - chr3_4:68859941-68859960 Msa0517300:intron 10.0%
!!! ATAATTGAGTTTTTAATAAA+AGG + chr3_4:68859991-68860010 None:intergenic 10.0%
!!! TTGAATAAAATTTTATTTGA+AGG - chr3_4:68859941-68859960 Msa0517300:intron 10.0%
!!! ATAATTGAGTTTTTAATAAA+AGG + chr3_4:68859991-68860010 None:intergenic 10.0%
!! TACATATATTGTACATTTAT+AGG + chr3_4:68859580-68859599 None:intergenic 15.0%
!! AAAAAAAAAAAACACAAACT+TGG - chr3_4:68860237-68860256 Msa0517300:intron 15.0%
!! TACATATATTGTACATTTAT+AGG + chr3_4:68859580-68859599 None:intergenic 15.0%
!! AAAAAAAAAAAACACAAACT+TGG - chr3_4:68860237-68860256 Msa0517300:intron 15.0%
!! CATTATTTATACTATAAGCT+AGG + chr3_4:68859315-68859334 None:intergenic 20.0%
!! ACATTTATATTTCCCTTATT+TGG - chr3_4:68859666-68859685 Msa0517300:CDS 20.0%
!! AATGAAGAAGAAAAATTCAA+AGG - chr3_4:68860385-68860404 Msa0517300:intron 20.0%
!! ATAGGTTTATAAAATGGAAT+TGG + chr3_4:68860472-68860491 None:intergenic 20.0%
!! TTGTGAATAGGTTTATAAAA+TGG + chr3_4:68860478-68860497 None:intergenic 20.0%
!! CATTATTTATACTATAAGCT+AGG + chr3_4:68859315-68859334 None:intergenic 20.0%
!! ACATTTATATTTCCCTTATT+TGG - chr3_4:68859666-68859685 Msa0517300:CDS 20.0%
!! AATGAAGAAGAAAAATTCAA+AGG - chr3_4:68860385-68860404 Msa0517300:intron 20.0%
!! ATAGGTTTATAAAATGGAAT+TGG + chr3_4:68860472-68860491 None:intergenic 20.0%
!! TTGTGAATAGGTTTATAAAA+TGG + chr3_4:68860478-68860497 None:intergenic 20.0%
! TTTATACTATAAGCTAGGTA+GGG + chr3_4:68859310-68859329 None:intergenic 25.0%
! ATTTATACTATAAGCTAGGT+AGG + chr3_4:68859311-68859330 None:intergenic 25.0%
! CATAATTGAGAAATTCAACA+AGG + chr3_4:68859424-68859443 None:intergenic 25.0%
! AGTAGTAACTATTCATAGAT+TGG - chr3_4:68859615-68859634 Msa0517300:CDS 25.0%
! GTAGTAACTATTCATAGATT+GGG - chr3_4:68859616-68859635 Msa0517300:CDS 25.0%
!!! CTCTCTTTTTTACCAAATAA+GGG + chr3_4:68859681-68859700 None:intergenic 25.0%
!!! TCTCTCTTTTTTACCAAATA+AGG + chr3_4:68859682-68859701 None:intergenic 25.0%
!! TTTTATGACTAATCTCTGTT+AGG + chr3_4:68860179-68860198 None:intergenic 25.0%
! TTACTCAAGTTATAAACTCT+AGG + chr3_4:68860278-68860297 None:intergenic 25.0%
!!! GTTTCTTGAATATTGGTTTT+TGG + chr3_4:68860450-68860469 None:intergenic 25.0%
! TTTGGTATAGGTTTGTAAAT+TGG + chr3_4:68860508-68860527 None:intergenic 25.0%
!! TTATAGATTGGAACGTATTT+TGG + chr3_4:68860526-68860545 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr3_4:68860586-68860605 None:intergenic 25.0%
! TTGTAAATTGGAATAACCTT+TGG + chr3_4:68860634-68860653 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr3_4:68860586-68860605 None:intergenic 25.0%
! TTTATACTATAAGCTAGGTA+GGG + chr3_4:68859310-68859329 None:intergenic 25.0%
! ATTTATACTATAAGCTAGGT+AGG + chr3_4:68859311-68859330 None:intergenic 25.0%
! CATAATTGAGAAATTCAACA+AGG + chr3_4:68859424-68859443 None:intergenic 25.0%
! AGTAGTAACTATTCATAGAT+TGG - chr3_4:68859615-68859634 Msa0517300:CDS 25.0%
! GTAGTAACTATTCATAGATT+GGG - chr3_4:68859616-68859635 Msa0517300:CDS 25.0%
!!! CTCTCTTTTTTACCAAATAA+GGG + chr3_4:68859681-68859700 None:intergenic 25.0%
!!! TCTCTCTTTTTTACCAAATA+AGG + chr3_4:68859682-68859701 None:intergenic 25.0%
!! TTTTATGACTAATCTCTGTT+AGG + chr3_4:68860179-68860198 None:intergenic 25.0%
! TTACTCAAGTTATAAACTCT+AGG + chr3_4:68860278-68860297 None:intergenic 25.0%
!!! GTTTCTTGAATATTGGTTTT+TGG + chr3_4:68860450-68860469 None:intergenic 25.0%
! TTTGGTATAGGTTTGTAAAT+TGG + chr3_4:68860508-68860527 None:intergenic 25.0%
!! TTATAGATTGGAACGTATTT+TGG + chr3_4:68860526-68860545 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr3_4:68860586-68860605 None:intergenic 25.0%
! TTGTAAATTGGAATAACCTT+TGG + chr3_4:68860634-68860653 None:intergenic 25.0%
! TTGTAAATTGGAATTACCTT+TGG + chr3_4:68860586-68860605 None:intergenic 25.0%
AGAGAAATTGTTTGAAGACT+TGG + chr3_4:68859364-68859383 None:intergenic 30.0%
AACAGAAGTAGCATAACAAA+AGG + chr3_4:68859511-68859530 None:intergenic 30.0%
!!! GGTTAGTTTTTGTTTACTCT+TGG - chr3_4:68859637-68859656 Msa0517300:CDS 30.0%
!! GTTTTTGTTTACTCTTGGTA+TGG - chr3_4:68859642-68859661 Msa0517300:CDS 30.0%
AAGAGAGAGAGAGAAATTTA+TGG - chr3_4:68859694-68859713 Msa0517300:CDS 30.0%
GCTTGAAAATATCATTGTTC+AGG - chr3_4:68859728-68859747 Msa0517300:intron 30.0%
TCCTCAAAGTCATGTTTAAA+TGG - chr3_4:68859790-68859809 Msa0517300:intron 30.0%
ACCATTTAAACATGACTTTG+AGG + chr3_4:68859794-68859813 None:intergenic 30.0%
TTAGGAAATTTGACTGATCA+TGG + chr3_4:68860161-68860180 None:intergenic 30.0%
! TAATTTTGCATTTCTTGTGC+AGG - chr3_4:68860295-68860314 Msa0517300:intron 30.0%
! CATCTAAAACACAAACTCAA+AGG - chr3_4:68860415-68860434 Msa0517300:intron 30.0%
! GGAATTGGTTTCTTGAATAT+TGG + chr3_4:68860457-68860476 None:intergenic 30.0%
ATTGGAATGTCTTTGTGAAT+AGG + chr3_4:68860490-68860509 None:intergenic 30.0%
!!! ATTGGAACGTATTTTGGTAT+AGG + chr3_4:68860520-68860539 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+GGG + chr3_4:68860568-68860587 None:intergenic 30.0%
!! ATTGGAATTACCTTTGGAAT+AGG + chr3_4:68860580-68860599 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr3_4:68860568-68860587 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr3_4:68860615-68860634 Msa0517300:five_prime_UTR 30.0%
!! ATTGGAATAACCTTTGGAAT+AGG + chr3_4:68860628-68860647 None:intergenic 30.0%
!! TTTGGAATTGGCTTGTAAAT+TGG + chr3_4:68860664-68860683 None:intergenic 30.0%
AATTTACAAGCCAATTCCAA+AGG - chr3_4:68860663-68860682 Msa0517300:five_prime_UTR 30.0%
!! ATTGGAATTACCTTTGGAAT+TGG + chr3_4:68860580-68860599 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr3_4:68860568-68860587 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr3_4:68860615-68860634 Msa0517300:five_prime_UTR 30.0%
!! TAATGGATTGGCTTTACAAT+GGG + chr3_4:68860724-68860743 None:intergenic 30.0%
!! TTAATGGATTGGCTTTACAA+TGG + chr3_4:68860725-68860744 None:intergenic 30.0%
AGAGAAATTGTTTGAAGACT+TGG + chr3_4:68859364-68859383 None:intergenic 30.0%
AACAGAAGTAGCATAACAAA+AGG + chr3_4:68859511-68859530 None:intergenic 30.0%
!!! GGTTAGTTTTTGTTTACTCT+TGG - chr3_4:68859637-68859656 Msa0517300:CDS 30.0%
!! GTTTTTGTTTACTCTTGGTA+TGG - chr3_4:68859642-68859661 Msa0517300:CDS 30.0%
AAGAGAGAGAGAGAAATTTA+TGG - chr3_4:68859694-68859713 Msa0517300:CDS 30.0%
GCTTGAAAATATCATTGTTC+AGG - chr3_4:68859728-68859747 Msa0517300:intron 30.0%
TCCTCAAAGTCATGTTTAAA+TGG - chr3_4:68859790-68859809 Msa0517300:intron 30.0%
ACCATTTAAACATGACTTTG+AGG + chr3_4:68859794-68859813 None:intergenic 30.0%
TTAGGAAATTTGACTGATCA+TGG + chr3_4:68860161-68860180 None:intergenic 30.0%
! TAATTTTGCATTTCTTGTGC+AGG - chr3_4:68860295-68860314 Msa0517300:intron 30.0%
! CATCTAAAACACAAACTCAA+AGG - chr3_4:68860415-68860434 Msa0517300:intron 30.0%
! GGAATTGGTTTCTTGAATAT+TGG + chr3_4:68860457-68860476 None:intergenic 30.0%
ATTGGAATGTCTTTGTGAAT+AGG + chr3_4:68860490-68860509 None:intergenic 30.0%
!!! ATTGGAACGTATTTTGGTAT+AGG + chr3_4:68860520-68860539 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+GGG + chr3_4:68860568-68860587 None:intergenic 30.0%
!! ATTGGAATTACCTTTGGAAT+AGG + chr3_4:68860580-68860599 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr3_4:68860568-68860587 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr3_4:68860615-68860634 Msa0517300:five_prime_UTR 30.0%
!! ATTGGAATAACCTTTGGAAT+AGG + chr3_4:68860628-68860647 None:intergenic 30.0%
!! TTTGGAATTGGCTTGTAAAT+TGG + chr3_4:68860664-68860683 None:intergenic 30.0%
AATTTACAAGCCAATTCCAA+AGG - chr3_4:68860663-68860682 Msa0517300:five_prime_UTR 30.0%
!! ATTGGAATTACCTTTGGAAT+TGG + chr3_4:68860580-68860599 None:intergenic 30.0%
! TTTGGAATAGGCTTGTAAAT+TGG + chr3_4:68860568-68860587 None:intergenic 30.0%
AATTTACAAGCCTATTCCAA+AGG - chr3_4:68860615-68860634 Msa0517300:five_prime_UTR 30.0%
!! TAATGGATTGGCTTTACAAT+GGG + chr3_4:68860724-68860743 None:intergenic 30.0%
!! TTAATGGATTGGCTTTACAA+TGG + chr3_4:68860725-68860744 None:intergenic 30.0%
AAGAGTGGTTTAGAAGTGAA+AGG + chr3_4:68859392-68859411 None:intergenic 35.0%
! TCTAAACCACTCTTCTTTTG+TGG - chr3_4:68859398-68859417 Msa0517300:CDS 35.0%
GAAAAGCTTCCAATTTGCAA+AGG - chr3_4:68859445-68859464 Msa0517300:CDS 35.0%
TAGCATAACAAAAGGTGACA+AGG + chr3_4:68859503-68859522 None:intergenic 35.0%
AAAATGACTCACAAACCTGA+AGG + chr3_4:68859549-68859568 None:intergenic 35.0%
ACTATCATCATCATCACACA+AGG + chr3_4:68859838-68859857 None:intergenic 35.0%
CTTCTTCATTATGTCCTTCT+AGG + chr3_4:68860375-68860394 None:intergenic 35.0%
TTGTGGATAGGCTTATAGAT+TGG + chr3_4:68860538-68860557 None:intergenic 35.0%
!! TGTAAATGGGAATTGGTTTG+TGG + chr3_4:68860555-68860574 None:intergenic 35.0%
ATAGGCTTGTAAATGGGAAT+TGG + chr3_4:68860562-68860581 None:intergenic 35.0%
!! CTTTGGAATAGGCTTGTAAA+TGG + chr3_4:68860569-68860588 None:intergenic 35.0%
CATTTACAAGCCTATTCCAA+AGG - chr3_4:68860567-68860586 Msa0517300:CDS 35.0%
ATTGGAACAGGCTTGTAAAT+TGG + chr3_4:68860598-68860617 None:intergenic 35.0%
ATAGGCTTGTAAATTGGAAC+AGG + chr3_4:68860610-68860629 None:intergenic 35.0%
ATTGGAACAGGCTTGTAAAT+TGG + chr3_4:68860598-68860617 None:intergenic 35.0%
!! ATTGGCTTGTAAATTGGAAC+AGG + chr3_4:68860658-68860677 None:intergenic 35.0%
TTTACAATGGGAACTACCTT+TGG + chr3_4:68860712-68860731 None:intergenic 35.0%
AAGAGTGGTTTAGAAGTGAA+AGG + chr3_4:68859392-68859411 None:intergenic 35.0%
! TCTAAACCACTCTTCTTTTG+TGG - chr3_4:68859398-68859417 Msa0517300:CDS 35.0%
GAAAAGCTTCCAATTTGCAA+AGG - chr3_4:68859445-68859464 Msa0517300:CDS 35.0%
TAGCATAACAAAAGGTGACA+AGG + chr3_4:68859503-68859522 None:intergenic 35.0%
AAAATGACTCACAAACCTGA+AGG + chr3_4:68859549-68859568 None:intergenic 35.0%
ACTATCATCATCATCACACA+AGG + chr3_4:68859838-68859857 None:intergenic 35.0%
CTTCTTCATTATGTCCTTCT+AGG + chr3_4:68860375-68860394 None:intergenic 35.0%
TTGTGGATAGGCTTATAGAT+TGG + chr3_4:68860538-68860557 None:intergenic 35.0%
!! TGTAAATGGGAATTGGTTTG+TGG + chr3_4:68860555-68860574 None:intergenic 35.0%
ATAGGCTTGTAAATGGGAAT+TGG + chr3_4:68860562-68860581 None:intergenic 35.0%
!! CTTTGGAATAGGCTTGTAAA+TGG + chr3_4:68860569-68860588 None:intergenic 35.0%
CATTTACAAGCCTATTCCAA+AGG - chr3_4:68860567-68860586 Msa0517300:CDS 35.0%
ATTGGAACAGGCTTGTAAAT+TGG + chr3_4:68860598-68860617 None:intergenic 35.0%
ATAGGCTTGTAAATTGGAAC+AGG + chr3_4:68860610-68860629 None:intergenic 35.0%
ATTGGAACAGGCTTGTAAAT+TGG + chr3_4:68860598-68860617 None:intergenic 35.0%
!! ATTGGCTTGTAAATTGGAAC+AGG + chr3_4:68860658-68860677 None:intergenic 35.0%
TTTACAATGGGAACTACCTT+TGG + chr3_4:68860712-68860731 None:intergenic 35.0%
CAAAAGTGGCCTTTGCAAAT+TGG + chr3_4:68859457-68859476 None:intergenic 40.0%
!! CAATTTGCAAAGGCCACTTT+TGG - chr3_4:68859455-68859474 Msa0517300:CDS 40.0%
GTAGCAAGAAATGATCCTTC+AGG - chr3_4:68859531-68859550 Msa0517300:CDS 40.0%
TCAAACCAATACATGCACAC+CGG - chr3_4:68860046-68860065 Msa0517300:intron 40.0%
TACTTGAACCAATGTAGTGC+CGG + chr3_4:68860068-68860087 None:intergenic 40.0%
GAAACCAAGTGAACACAGAT+GGG - chr3_4:68860317-68860336 Msa0517300:intron 40.0%
GCAACAAAGACAAACCTAGA+AGG - chr3_4:68860358-68860377 Msa0517300:intron 40.0%
!! ATGGGAATTGGTTTGTGGAT+AGG + chr3_4:68860550-68860569 None:intergenic 40.0%
!! ATGGGAACTACCTTTGGAAT+AGG + chr3_4:68860706-68860725 None:intergenic 40.0%
CAAAAGTGGCCTTTGCAAAT+TGG + chr3_4:68859457-68859476 None:intergenic 40.0%
!! CAATTTGCAAAGGCCACTTT+TGG - chr3_4:68859455-68859474 Msa0517300:CDS 40.0%
GTAGCAAGAAATGATCCTTC+AGG - chr3_4:68859531-68859550 Msa0517300:CDS 40.0%
TCAAACCAATACATGCACAC+CGG - chr3_4:68860046-68860065 Msa0517300:intron 40.0%
TACTTGAACCAATGTAGTGC+CGG + chr3_4:68860068-68860087 None:intergenic 40.0%
GAAACCAAGTGAACACAGAT+GGG - chr3_4:68860317-68860336 Msa0517300:intron 40.0%
GCAACAAAGACAAACCTAGA+AGG - chr3_4:68860358-68860377 Msa0517300:intron 40.0%
!! ATGGGAATTGGTTTGTGGAT+AGG + chr3_4:68860550-68860569 None:intergenic 40.0%
!! ATGGGAACTACCTTTGGAAT+AGG + chr3_4:68860706-68860725 None:intergenic 40.0%
ACAAGGCCACAAAAGAAGAG+TGG + chr3_4:68859407-68859426 None:intergenic 45.0%
AAGGTGACAAGGAGCAACAA+AGG + chr3_4:68859492-68859511 None:intergenic 45.0%
ACAAACTTGGCCATTGAGCT+AGG - chr3_4:68860250-68860269 Msa0517300:intron 45.0%
GGAAACCAAGTGAACACAGA+TGG - chr3_4:68860316-68860335 Msa0517300:intron 45.0%
TGGGAAGCTTGCAAATGAAG+AGG - chr3_4:68860336-68860355 Msa0517300:intron 45.0%
ACAAGGCCACAAAAGAAGAG+TGG + chr3_4:68859407-68859426 None:intergenic 45.0%
AAGGTGACAAGGAGCAACAA+AGG + chr3_4:68859492-68859511 None:intergenic 45.0%
ACAAACTTGGCCATTGAGCT+AGG - chr3_4:68860250-68860269 Msa0517300:intron 45.0%
GGAAACCAAGTGAACACAGA+TGG - chr3_4:68860316-68860335 Msa0517300:intron 45.0%
TGGGAAGCTTGCAAATGAAG+AGG - chr3_4:68860336-68860355 Msa0517300:intron 45.0%
!!! AAAGGCCACTTTTGGCCTTC+TGG - chr3_4:68859463-68859482 Msa0517300:CDS 50.0%
!!! AAGGCCACTTTTGGCCTTCT+GGG - chr3_4:68859464-68859483 Msa0517300:CDS 50.0%
GAGCAACAAAGGAACCCAGA+AGG + chr3_4:68859481-68859500 None:intergenic 50.0%
!! TAGTGCCGGTGTGCATGTAT+TGG + chr3_4:68860054-68860073 None:intergenic 50.0%
ACTCTAGGTGCCTAGCTCAA+TGG + chr3_4:68860263-68860282 None:intergenic 50.0%
GCTTCCCATCTGTGTTCACT+TGG + chr3_4:68860324-68860343 None:intergenic 50.0%
!!! AAAGGCCACTTTTGGCCTTC+TGG - chr3_4:68859463-68859482 Msa0517300:CDS 50.0%
!!! AAGGCCACTTTTGGCCTTCT+GGG - chr3_4:68859464-68859483 Msa0517300:CDS 50.0%
GAGCAACAAAGGAACCCAGA+AGG + chr3_4:68859481-68859500 None:intergenic 50.0%
!! TAGTGCCGGTGTGCATGTAT+TGG + chr3_4:68860054-68860073 None:intergenic 50.0%
ACTCTAGGTGCCTAGCTCAA+TGG + chr3_4:68860263-68860282 None:intergenic 50.0%
GCTTCCCATCTGTGTTCACT+TGG + chr3_4:68860324-68860343 None:intergenic 50.0%
GGAACCCAGAAGGCCAAAAG+TGG + chr3_4:68859471-68859490 None:intergenic 55.0%
CATGCACACCGGCACTACAT+TGG - chr3_4:68860057-68860076 Msa0517300:intron 55.0%
GGAACCCAGAAGGCCAAAAG+TGG + chr3_4:68859471-68859490 None:intergenic 55.0%
CATGCACACCGGCACTACAT+TGG - chr3_4:68860057-68860076 Msa0517300:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 68859301 68860744 68859301 ID=Msa0517300;Name=Msa0517300
chr3_4 mRNA 68859301 68860744 68859301 ID=Msa0517300-mRNA-1;Parent=Msa0517300;Name=Msa0517300-mRNA-1;_AED=0.16;_eAED=0.17;_QI=140|1|0.5|1|1|1|2|0|179
chr3_4 exon 68859301 68859728 68859301 ID=Msa0517300-mRNA-1:exon:18257;Parent=Msa0517300-mRNA-1
chr3_4 exon 68860493 68860744 68860493 ID=Msa0517300-mRNA-1:exon:18256;Parent=Msa0517300-mRNA-1
chr3_4 five_prime_UTR 68860605 68860744 68860605 ID=Msa0517300-mRNA-1:five_prime_utr;Parent=Msa0517300-mRNA-1
chr3_4 CDS 68860493 68860604 68860493 ID=Msa0517300-mRNA-1:cds;Parent=Msa0517300-mRNA-1
chr3_4 CDS 68859301 68859728 68859301 ID=Msa0517300-mRNA-1:cds;Parent=Msa0517300-mRNA-1
Gene Sequence

>Msa0517300

ATGAGAAAAGCTTCCAATTTGCAAAGGCCACTTTTGGCCTTCTGGGTTCCTTTGTTGCTCCTTGTCACCTTTTGTTATGCTACTTCTGTTGTAGCAAGAAATGATCCTTCAGGAAACCAAGTGAACACAGATGGGAAGCTTGCAAATGAAGAGGCAACAAAGACAAACCTAGAAGGACATAATGAAGAAGAAAAATTCAAAGGATTTTTTCATCTAAAACACAAACTCAAAGGATATTTTCACCAAAAACCAATATTCAAGAAACCAATTCCATTTTATAAACCTATTCACAAAGACATTCCAATTTACAAACCTATACCAAAATACGTTCCAATCTATAAGCCTATCCACAAACCAATTCCCATTTACAAGCCTATTCCAAAGGTAATTCCAATTTACAAGCCTGTTCCAATTTACAAGCCTATTCCAAAGGTTATTCCAATTTACAAGCCTGTTCCAATTTACAAGCCAATTCCAAAGGTAATTCCAATTTACAAGCCTATTCCAAAGGTAGTTCCCATTGTAAAGCCAATCCATTAA

Protein sequence

>Msa0517300

MRKASNLQRPLLAFWVPLLLLVTFCYATSVVARNDPSGNQVNTDGKLANEEATKTNLEGHNEEEKFKGFFHLKHKLKGYFHQKPIFKKPIPFYKPIHKDIPIYKPIPKYVPIYKPIHKPIPIYKPIPKVIPIYKPVPIYKPIPKVIPIYKPVPIYKPIPKVIPIYKPIPKVVPIVKPIH*