Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332720 | XP_003596337.1 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.53e-163 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332720 | sp|P16273|PRPX_HORVU | 48.416 | 221 | 110 | 3 | 8 | 224 | 9 | 229 | 3.02e-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048950 | Msa0332720 | 0.824415 | 8.174331e-54 | -8.615850e-47 |
| Msa0059880 | Msa0332720 | 0.832987 | 6.905596e-56 | -8.615850e-47 |
| Msa0072030 | Msa0332720 | 0.818257 | 2.153863e-52 | -8.615850e-47 |
| Msa0073970 | Msa0332720 | 0.837192 | 6.007351e-57 | -8.615850e-47 |
| Msa0121970 | Msa0332720 | 0.848619 | 5.460734e-60 | -8.615850e-47 |
| Msa0150910 | Msa0332720 | 0.817953 | 2.523402e-52 | -8.615850e-47 |
| Msa0166620 | Msa0332720 | 0.847122 | 1.411577e-59 | -8.615850e-47 |
| Msa0214630 | Msa0332720 | 0.928428 | 2.928410e-92 | -8.615850e-47 |
| Msa0238330 | Msa0332720 | 0.807964 | 3.907948e-50 | -8.615850e-47 |
| Msa0255010 | Msa0332720 | 0.935567 | 6.925380e-97 | -8.615850e-47 |
| Msa0294090 | Msa0332720 | 0.850998 | 1.181737e-60 | -8.615850e-47 |
| Msa0332720 | Msa0548970 | 0.805599 | 1.235175e-49 | -8.615850e-47 |
| Msa0332720 | Msa0599600 | 0.804604 | 1.994692e-49 | -8.615850e-47 |
| Msa0332720 | Msa0605470 | 0.804866 | 1.758258e-49 | -8.615850e-47 |
| Msa0332720 | Msa0651820 | 0.810919 | 9.071644e-51 | -8.615850e-47 |
| Msa0332720 | Msa0666580 | 0.801023 | 1.094969e-48 | -8.615850e-47 |
| Msa0332720 | Msa0678620 | 0.807701 | 4.445040e-50 | -8.615850e-47 |
| Msa0332720 | Msa0727480 | 0.810214 | 1.288017e-50 | -8.615850e-47 |
| Msa0332720 | Msa0777250 | 0.801345 | 9.406582e-49 | -8.615850e-47 |
| Msa0332720 | Msa0814160 | 0.801272 | 9.738077e-49 | -8.615850e-47 |
| Msa0332720 | Msa0883640 | 0.809200 | 2.127993e-50 | -8.615850e-47 |
| Msa0332720 | Msa0910830 | 0.812887 | 3.381915e-51 | -8.615850e-47 |
| Msa0332720 | Msa0945320 | 0.800000 | 1.769129e-48 | -8.615850e-47 |
| Msa0332720 | Msa0951150 | 0.810156 | 1.325925e-50 | -8.615850e-47 |
| Msa0332720 | Msa0960090 | 0.811245 | 7.711083e-51 | -8.615850e-47 |
| Msa0332720 | Msa0985700 | 0.809241 | 2.085243e-50 | -8.615850e-47 |
| Msa0332720 | Msa0987640 | 0.809260 | 2.066356e-50 | -8.615850e-47 |
| Msa0332720 | Msa1021620 | 0.801358 | 9.351711e-49 | -8.615850e-47 |
| Msa0332720 | Msa1042340 | 0.806138 | 9.515427e-50 | -8.615850e-47 |
| Msa0332720 | Msa1109880 | 0.808497 | 3.008092e-50 | -8.615850e-47 |
| Msa0332720 | Msa1109890 | 0.824675 | 7.097683e-54 | -8.615850e-47 |
| Msa0332720 | Msa1269050 | 0.812522 | 4.064424e-51 | -8.615850e-47 |
| Msa0332720 | Msa1323030 | 0.810265 | 1.256141e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332720 | MtrunA17_Chr2g0315601 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.41e-167 | 461 |
| Msa0332720 | MtrunA17_Chr2g0315561 | 90.749 | 227 | 21 | 0 | 1 | 227 | 1 | 227 | 5.04e-157 | 434 |
| Msa0332720 | MtrunA17_Chr8g0359751 | 75.330 | 227 | 51 | 2 | 5 | 226 | 10 | 236 | 4.73e-126 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332720 | AT1G78780.3 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.46e-121 | 344 |
| Msa0332720 | AT1G78780.5 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.46e-121 | 344 |
| Msa0332720 | AT1G78780.2 | 69.874 | 239 | 59 | 3 | 1 | 227 | 1 | 238 | 1.52e-120 | 342 |
| Msa0332720 | AT1G78780.4 | 68.619 | 239 | 59 | 4 | 1 | 227 | 1 | 235 | 3.64e-116 | 331 |
| Msa0332720 | AT1G78780.1 | 70.455 | 176 | 40 | 2 | 64 | 227 | 1 | 176 | 1.98e-87 | 256 |
Find 61 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAAGTTCTTTGTTAA+TGG | 0.183252 | 2_4:-49867329 | Msa0332720:intron |
| GTAAACAACTTATGATTAAT+TGG | 0.225426 | 2_4:+49864964 | None:intergenic |
| CTGAAATTGCTTTCAAGTTT+AGG | 0.246221 | 2_4:-49865846 | Msa0332720:CDS |
| CTAAACTTGAAAGCAATTTC+AGG | 0.282078 | 2_4:+49865847 | None:intergenic |
| TGCTTTCAAGTTTAGGCATT+GGG | 0.293525 | 2_4:-49865839 | Msa0332720:CDS |
| GTCTCTTCATTTGACTTGTA+TGG | 0.318507 | 2_4:+49865952 | None:intergenic |
| GTTTCCTCCAATGATCCTTC+TGG | 0.340734 | 2_4:+49867434 | None:intergenic |
| GTAGGGGCATGTCCCTTAAA+AGG | 0.343475 | 2_4:+49865802 | None:intergenic |
| TTGTATGGCTTGAAATCTTC+AGG | 0.351240 | 2_4:+49865967 | None:intergenic |
| TCCTTCCTTCTTCAAAGAGC+TGG | 0.367470 | 2_4:+49867565 | None:intergenic |
| TATGACCCAGGAGAGTTGTT+TGG | 0.376206 | 2_4:-49865037 | Msa0332720:CDS |
| GAATGGACATGCTGAAGTTT+TGG | 0.380812 | 2_4:+49864988 | None:intergenic |
| GACACACAAGATCCGCTTGC+AGG | 0.389775 | 2_4:-49867375 | Msa0332720:CDS |
| TGCTATCTCCGCTTGATAGA+AGG | 0.400178 | 2_4:+49865011 | None:intergenic |
| AGGCATTGGGGATTCTTTGA+AGG | 0.405743 | 2_4:-49865826 | Msa0332720:CDS |
| TCTTGGAAAAGCTGATTTGA+AGG | 0.414467 | 2_4:+49865909 | None:intergenic |
| GATGGTCCAATTCTCTGGCT+TGG | 0.418419 | 2_4:-49865773 | Msa0332720:CDS |
| ATGGTCCAATTCTCTGGCTT+GGG | 0.433013 | 2_4:-49865772 | Msa0332720:CDS |
| ATTTCCCATGCAAATCCTCT+TGG | 0.434442 | 2_4:+49865892 | None:intergenic |
| GAGTTCCCAAGCCAGAGAAT+TGG | 0.445368 | 2_4:+49865767 | None:intergenic |
| GGAAAGATGGTCCAATTCTC+TGG | 0.445571 | 2_4:-49865778 | Msa0332720:CDS |
| GTCAACCAGCTCTTTGAAGA+AGG | 0.445909 | 2_4:-49867570 | Msa0332720:CDS |
| TTTAAGGGACATGCCCCTAC+TGG | 0.446687 | 2_4:-49865799 | Msa0332720:CDS |
| CTAGGTGGATGACACTTTGA+AGG | 0.455213 | 2_4:-49865080 | Msa0332720:intron |
| AGGCCTCCAAACAACTCTCC+TGG | 0.465379 | 2_4:+49865031 | None:intergenic |
| ACTTATGATTAATTGGAGAA+TGG | 0.470422 | 2_4:+49864971 | None:intergenic |
| TGCAAAATGCTATTAAGTCA+TGG | 0.470507 | 2_4:-49867409 | Msa0332720:CDS |
| CACTTTGAAGGTTGAAGAAG+TGG | 0.475985 | 2_4:-49865068 | Msa0332720:CDS |
| CATGGTGGCCCTCCCACCTA+TGG | 0.478252 | 2_4:-49867597 | Msa0332720:CDS |
| GGAATGGCCAGAAGGATCAT+TGG | 0.485397 | 2_4:-49867441 | Msa0332720:CDS |
| TTGCTTTCAAGTTTAGGCAT+TGG | 0.497447 | 2_4:-49865840 | Msa0332720:CDS |
| TGCTATTAAGTCATGGGAGA+TGG | 0.500588 | 2_4:-49867402 | Msa0332720:CDS |
| GACCCAGGAGAGTTGTTTGG+AGG | 0.521378 | 2_4:-49865034 | Msa0332720:CDS |
| TTTCTAATTGCAGGCAGGGA+GGG | 0.527343 | 2_4:-49866051 | Msa0332720:intron |
| GGCCTCCAAACAACTCTCCT+GGG | 0.528244 | 2_4:+49865032 | None:intergenic |
| GCAAAATGCTATTAAGTCAT+GGG | 0.533576 | 2_4:-49867408 | Msa0332720:CDS |
| ACATGCCCCTACTGGAAAGA+TGG | 0.534599 | 2_4:-49865791 | Msa0332720:CDS |
| GAGAATATCCAGTGGAGACA+TGG | 0.538003 | 2_4:-49867615 | Msa0332720:CDS |
| CTCTGGCTTGGGAACTCTCA+AGG | 0.542832 | 2_4:-49865761 | Msa0332720:intron |
| CTGGTTGACAAGACCATAGG+TGG | 0.543209 | 2_4:+49867584 | None:intergenic |
| GAGGGCCACCATGTCTCCAC+TGG | 0.548695 | 2_4:+49867607 | None:intergenic |
| ATTGGACCATCTTTCCAGTA+GGG | 0.558086 | 2_4:+49865785 | None:intergenic |
| AATTGGACCATCTTTCCAGT+AGG | 0.570938 | 2_4:+49865784 | None:intergenic |
| ACCAGCTCTTTGAAGAAGGA+AGG | 0.578694 | 2_4:-49867566 | Msa0332720:CDS |
| GTGGAGATTTACTATGACCC+AGG | 0.582286 | 2_4:-49865049 | Msa0332720:CDS |
| GCAGAGGAAACTCTAAGCAT+AGG | 0.582569 | 2_4:-49866021 | Msa0332720:CDS |
| GCTTTCAAGTTTAGGCATTG+GGG | 0.594203 | 2_4:-49865838 | Msa0332720:CDS |
| TGACAAGACCATAGGTGGGA+GGG | 0.603232 | 2_4:+49867589 | None:intergenic |
| TTTGGAGGCCTTCTATCAAG+CGG | 0.613986 | 2_4:-49865019 | Msa0332720:CDS |
| TTGGACCATCTTTCCAGTAG+GGG | 0.615171 | 2_4:+49865786 | None:intergenic |
| ATGGCCAGAAGGATCATTGG+AGG | 0.617256 | 2_4:-49867438 | Msa0332720:CDS |
| GAGCTGGTTGACAAGACCAT+AGG | 0.618838 | 2_4:+49867581 | None:intergenic |
| AACTTGAAAGCAATTTCAGG+TGG | 0.634134 | 2_4:+49865850 | None:intergenic |
| GAAATCATTAAAGTTTACAC+AGG | 0.640637 | 2_4:-49865874 | Msa0332720:CDS |
| TGGTCTTGAAGTCCTGCAAG+CGG | 0.649941 | 2_4:+49867363 | None:intergenic |
| ATTTCTAATTGCAGGCAGGG+AGG | 0.661707 | 2_4:-49866052 | Msa0332720:intron |
| AATATCCAGTGGAGACATGG+TGG | 0.668708 | 2_4:-49867612 | Msa0332720:CDS |
| CAGGGAGGGATTAACTGCAG+AGG | 0.669645 | 2_4:-49866037 | Msa0332720:CDS |
| TTGACAAGACCATAGGTGGG+AGG | 0.674543 | 2_4:+49867588 | None:intergenic |
| ATGAAGCTGAGAATATCCAG+TGG | 0.685948 | 2_4:-49867623 | Msa0332720:CDS |
| TGGTTGACAAGACCATAGGT+GGG | 0.689395 | 2_4:+49867585 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTTAAATATAATAA+AGG | - | chr2_4:49867168-49867187 | Msa0332720:intron | 0.0% |
| !!! | GATAAAAATTATTTCAATTT+TGG | - | chr2_4:49865614-49865633 | Msa0332720:intron | 10.0% |
| !! | AATTTAAATATAATAAAGGA+AGG | - | chr2_4:49867172-49867191 | Msa0332720:intron | 10.0% |
| !! | TAAAATAAATGATAATCTAA+TGG | + | chr2_4:49867451-49867470 | None:intergenic | 10.0% |
| !!! | TTTTCTTAACAAATTTTTGT+AGG | - | chr2_4:49865186-49865205 | Msa0332720:intron | 15.0% |
| !! | TATGAATTATAATTCTATGA+AGG | - | chr2_4:49865414-49865433 | Msa0332720:intron | 15.0% |
| !! | GAATTATACAAAATTATTAG+TGG | - | chr2_4:49865505-49865524 | Msa0332720:intron | 15.0% |
| !!! | ATTGAAATAATTTTTATCCA+AGG | + | chr2_4:49865612-49865631 | None:intergenic | 15.0% |
| !! | TTAAAATGAGAAATTTAACA+TGG | + | chr2_4:49867027-49867046 | None:intergenic | 15.0% |
| !!! | TTCAAATTTCAATGTTTTTT+TGG | + | chr2_4:49867247-49867266 | None:intergenic | 15.0% |
| !!! | AACAATAATTTTTTTAACCT+AGG | - | chr2_4:49867550-49867569 | Msa0332720:intron | 15.0% |
| !! | AAAATTGAGAAAGAATTACA+TGG | + | chr2_4:49865170-49865189 | None:intergenic | 20.0% |
| !!! | TTAACAAATTTTTGTAGGAA+TGG | - | chr2_4:49865191-49865210 | Msa0332720:intron | 20.0% |
| !!! | AAATTCAAGTTCTTTGTTAA+TGG | - | chr2_4:49865319-49865338 | Msa0332720:intron | 20.0% |
| !!! | GTAAATGATTCAAATTTGTT+TGG | - | chr2_4:49865348-49865367 | Msa0332720:intron | 20.0% |
| !! | AATTATAATTCTATGAAGGA+CGG | - | chr2_4:49865418-49865437 | Msa0332720:intron | 20.0% |
| !! | TAATATATGAAACATGGATA+CGG | + | chr2_4:49865572-49865591 | None:intergenic | 20.0% |
| !!! | TTTATCTTTTTAATGGGTTT+AGG | - | chr2_4:49865665-49865684 | Msa0332720:intron | 20.0% |
| !! | AGATTAATGAATATACCAAT+AGG | + | chr2_4:49865749-49865768 | None:intergenic | 20.0% |
| !!! | AACAGCTATATTTTTTACTT+CGG | + | chr2_4:49865894-49865913 | None:intergenic | 20.0% |
| !!! | AAGTTAGCAATGATTTTTTT+AGG | - | chr2_4:49866248-49866267 | Msa0332720:intron | 20.0% |
| !!! | AGTTAGCAATGATTTTTTTA+GGG | - | chr2_4:49866249-49866268 | Msa0332720:intron | 20.0% |
| !! | TATTATTAATTGGATACAAG+TGG | - | chr2_4:49866325-49866344 | Msa0332720:intron | 20.0% |
| !!! | TATCAAAATTTGAGATCAAT+TGG | - | chr2_4:49866497-49866516 | Msa0332720:intron | 20.0% |
| !! | TAACTATAGAAATTAGATAC+AGG | + | chr2_4:49866527-49866546 | None:intergenic | 20.0% |
| !!! | AATTCAATATTTCTAATTGC+AGG | - | chr2_4:49866588-49866607 | Msa0332720:intron | 20.0% |
| !! | ATGATCTGAATTTAATTGTT+TGG | - | chr2_4:49866934-49866953 | Msa0332720:intron | 20.0% |
| !!! | TGAGAAATTTAAAATGATCA+AGG | + | chr2_4:49866982-49867001 | None:intergenic | 20.0% |
| !! | ATTAATAAGAAAATACCCAT+GGG | + | chr2_4:49867076-49867095 | None:intergenic | 20.0% |
| !! | AATTAATAAGAAAATACCCA+TGG | + | chr2_4:49867077-49867096 | None:intergenic | 20.0% |
| !!! | TAAATTTTAATGTTATCCCT+TGG | + | chr2_4:49867158-49867177 | None:intergenic | 20.0% |
| !!! | AATAATTTTTTTAACCTAGG+TGG | - | chr2_4:49867553-49867572 | Msa0332720:intron | 20.0% |
| ! | AATGGAGAATAAGATTAAGA+GGG | + | chr2_4:49865128-49865147 | None:intergenic | 25.0% |
| ! | AAATGGAGAATAAGATTAAG+AGG | + | chr2_4:49865129-49865148 | None:intergenic | 25.0% |
| !! | CAAAGAACTTGAATTTTTCA+GGG | + | chr2_4:49865315-49865334 | None:intergenic | 25.0% |
| !! | ACAAAGAACTTGAATTTTTC+AGG | + | chr2_4:49865316-49865335 | None:intergenic | 25.0% |
| ! | CGATCATAATATATGAAACA+TGG | + | chr2_4:49865578-49865597 | None:intergenic | 25.0% |
| !! | GAAATAATTTTTATCCAAGG+TGG | + | chr2_4:49865609-49865628 | None:intergenic | 25.0% |
| !! | TTTGATTCGTCAAAAAACAA+AGG | - | chr2_4:49866178-49866197 | Msa0332720:intron | 25.0% |
| !!! | GTTAGCAATGATTTTTTTAG+GGG | - | chr2_4:49866250-49866269 | Msa0332720:intron | 25.0% |
| ! | AGTTATTGTAATTCGGAATT+CGG | + | chr2_4:49866443-49866462 | None:intergenic | 25.0% |
| ! | AGGAATGAGTTATTGTAATT+CGG | + | chr2_4:49866450-49866469 | None:intergenic | 25.0% |
| ! | TATTAAACTTCGATTCTAAG+AGG | + | chr2_4:49866470-49866489 | None:intergenic | 25.0% |
| ! | GAAATCATTAAAGTTTACAC+AGG | - | chr2_4:49866774-49866793 | Msa0332720:intron | 25.0% |
| !! | TTAATTTTTACTGCAAGCAA+AGG | - | chr2_4:49867043-49867062 | Msa0332720:intron | 25.0% |
| ! | TTAATAAGAAAATACCCATG+GGG | + | chr2_4:49867075-49867094 | None:intergenic | 25.0% |
| ! | ATATGATATATGTGATAGGT+CGG | + | chr2_4:49867366-49867385 | None:intergenic | 25.0% |
| ! | AGTGATATGATATATGTGAT+AGG | + | chr2_4:49867370-49867389 | None:intergenic | 25.0% |
| ! | AGTGATGCATAAAATATAGA+GGG | + | chr2_4:49867526-49867545 | None:intergenic | 25.0% |
| ! | TAGTGATGCATAAAATATAG+AGG | + | chr2_4:49867527-49867546 | None:intergenic | 25.0% |
| ATAATCTAGAGAGGAAGAAA+TGG | + | chr2_4:49865146-49865165 | None:intergenic | 30.0% | |
| TTACATGGTATAATCTAGAG+AGG | + | chr2_4:49865155-49865174 | None:intergenic | 30.0% | |
| TGCAAAATGCTATTAAGTCA+TGG | - | chr2_4:49865239-49865258 | Msa0332720:intron | 30.0% | |
| GCAAAATGCTATTAAGTCAT+GGG | - | chr2_4:49865240-49865259 | Msa0332720:intron | 30.0% | |
| ! | AATTTTTATCCAAGGTGGAT+AGG | + | chr2_4:49865604-49865623 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTAAATCATCGCT+TGG | + | chr2_4:49865702-49865721 | None:intergenic | 30.0% |
| AAACAAAACACCAATGTTCT+TGG | + | chr2_4:49865950-49865969 | None:intergenic | 30.0% | |
| ! | CTTGTACTTTGCTTAGATTT+TGG | - | chr2_4:49865982-49866001 | Msa0332720:CDS | 30.0% |
| ATTAATTGGATACAAGTGGT+TGG | - | chr2_4:49866329-49866348 | Msa0332720:intron | 30.0% | |
| TCATCAAAGACAAATCGTTT+AGG | - | chr2_4:49866360-49866379 | Msa0332720:intron | 30.0% | |
| ATCAGACTATACTTACCAAA+CGG | - | chr2_4:49866417-49866436 | Msa0332720:intron | 30.0% | |
| ! | AATATTTCTAATTGCAGGCA+GGG | - | chr2_4:49866593-49866612 | Msa0332720:intron | 30.0% |
| CTAAACTTGAAAGCAATTTC+AGG | + | chr2_4:49866804-49866823 | None:intergenic | 30.0% | |
| !! | CTGAAATTGCTTTCAAGTTT+AGG | - | chr2_4:49866802-49866821 | Msa0332720:intron | 30.0% |
| !! | ATTCTTTGAAGGTCCTTTTA+AGG | - | chr2_4:49866833-49866852 | Msa0332720:intron | 30.0% |
| !! | TTCTTTGAAGGTCCTTTTAA+GGG | - | chr2_4:49866834-49866853 | Msa0332720:intron | 30.0% |
| !!! | TTAATTTGTTTTGCGTGTGT+AGG | - | chr2_4:49867091-49867110 | Msa0332720:intron | 30.0% |
| AAATAGAAAGGAAGATACCA+AGG | - | chr2_4:49867138-49867157 | Msa0332720:intron | 30.0% | |
| AATAGAAAGGAAGATACCAA+GGG | - | chr2_4:49867139-49867158 | Msa0332720:intron | 30.0% | |
| TGGAGTAAGAGAATAAAAAC+GGG | + | chr2_4:49867479-49867498 | None:intergenic | 30.0% | |
| GTGGAGTAAGAGAATAAAAA+CGG | + | chr2_4:49867480-49867499 | None:intergenic | 30.0% | |
| AAAAAGTTGTTCTCATAAGG+TGG | + | chr2_4:49867499-49867518 | None:intergenic | 30.0% | |
| GGTAAAAAGTTGTTCTCATA+AGG | + | chr2_4:49867502-49867521 | None:intergenic | 30.0% | |
| !!! | CTTGAATTTTTCAGGGACAA+TGG | + | chr2_4:49865308-49865327 | None:intergenic | 35.0% |
| ATGAAACATGGATACGGATA+CGG | + | chr2_4:49865566-49865585 | None:intergenic | 35.0% | |
| ! | TGTTTTCCAAGCGATGATTT+AGG | - | chr2_4:49865693-49865712 | Msa0332720:intron | 35.0% |
| AGTAGAACACGTAGAAAACT+TGG | - | chr2_4:49865802-49865821 | Msa0332720:CDS | 35.0% | |
| ACAAGTGAAGGAATCACTTT+AGG | + | chr2_4:49865864-49865883 | None:intergenic | 35.0% | |
| ! | TGTTCTTTCTAGTAGTAGAG+CGG | - | chr2_4:49865921-49865940 | Msa0332720:CDS | 35.0% |
| GAACAAACGATTGTGAAGAT+GGG | - | chr2_4:49866107-49866126 | Msa0332720:intron | 35.0% | |
| ! | AATTTTCCCGTTATGATGCT+GGG | - | chr2_4:49866133-49866152 | Msa0332720:intron | 35.0% |
| ATTCAAACCCAGCATCATAA+CGG | + | chr2_4:49866143-49866162 | None:intergenic | 35.0% | |
| ! | CAATATTTCTAATTGCAGGC+AGG | - | chr2_4:49866592-49866611 | Msa0332720:intron | 35.0% |
| TTGTATGGCTTGAAATCTTC+AGG | + | chr2_4:49866684-49866703 | None:intergenic | 35.0% | |
| !! | GTCTCTTCATTTGACTTGTA+TGG | + | chr2_4:49866699-49866718 | None:intergenic | 35.0% |
| !! | TCTTGGAAAAGCTGATTTGA+AGG | + | chr2_4:49866742-49866761 | None:intergenic | 35.0% |
| ! | TTCAAATCAGCTTTTCCAAG+AGG | - | chr2_4:49866741-49866760 | Msa0332720:intron | 35.0% |
| ! | TTTTCCAAGAGGATTTGCAT+GGG | - | chr2_4:49866752-49866771 | Msa0332720:intron | 35.0% |
| AACTTGAAAGCAATTTCAGG+TGG | + | chr2_4:49866801-49866820 | None:intergenic | 35.0% | |
| !! | TTGCTTTCAAGTTTAGGCAT+TGG | - | chr2_4:49866808-49866827 | Msa0332720:intron | 35.0% |
| !! | TGCTTTCAAGTTTAGGCATT+GGG | - | chr2_4:49866809-49866828 | Msa0332720:intron | 35.0% |
| GAGGCTGTAATCAAATAGAA+AGG | - | chr2_4:49867126-49867145 | Msa0332720:intron | 35.0% | |
| AGTAAGAGAATAAAAACGGG+TGG | + | chr2_4:49867476-49867495 | None:intergenic | 35.0% | |
| GATGCATAAAATATAGAGGG+TGG | + | chr2_4:49867523-49867542 | None:intergenic | 35.0% | |
| ATGAAGCTGAGAATATCCAG+TGG | - | chr2_4:49865025-49865044 | Msa0332720:CDS | 40.0% | |
| AGGGTGTGATGATTTCACTT+TGG | + | chr2_4:49865109-49865128 | None:intergenic | 40.0% | |
| ! | TTTTTGTAGGAATGGCCAGA+AGG | - | chr2_4:49865199-49865218 | Msa0332720:intron | 40.0% |
| TGCTATTAAGTCATGGGAGA+TGG | - | chr2_4:49865246-49865265 | Msa0332720:intron | 40.0% | |
| TATGAAGGACGGACAATCAT+CGG | - | chr2_4:49865429-49865448 | Msa0332720:intron | 40.0% | |
| ! | AATTCAGTTCGTGTCGTTGT+CGG | + | chr2_4:49865490-49865509 | None:intergenic | 40.0% |
| GCTTACATCATCGATCCTAT+TGG | - | chr2_4:49865731-49865750 | Msa0332720:intron | 40.0% | |
| TTCGGATGATACACAAGTGA+AGG | + | chr2_4:49865876-49865895 | None:intergenic | 40.0% | |
| CGCATGTAAGAGACTTTGTA+TGG | - | chr2_4:49866070-49866089 | Msa0332720:intron | 40.0% | |
| CGAACAAACGATTGTGAAGA+TGG | - | chr2_4:49866106-49866125 | Msa0332720:intron | 40.0% | |
| ! | GAATTTTCCCGTTATGATGC+TGG | - | chr2_4:49866132-49866151 | Msa0332720:intron | 40.0% |
| TTCAAACCCAGCATCATAAC+GGG | + | chr2_4:49866142-49866161 | None:intergenic | 40.0% | |
| AGGAGAATGAGTTCGATTTC+TGG | - | chr2_4:49866380-49866399 | Msa0332720:intron | 40.0% | |
| GGAGAATGAGTTCGATTTCT+GGG | - | chr2_4:49866381-49866400 | Msa0332720:intron | 40.0% | |
| ! | CTTTTCCAAGAGGATTTGCA+TGG | - | chr2_4:49866751-49866770 | Msa0332720:intron | 40.0% |
| ATTTCCCATGCAAATCCTCT+TGG | + | chr2_4:49866759-49866778 | None:intergenic | 40.0% | |
| !! | GCTTTCAAGTTTAGGCATTG+GGG | - | chr2_4:49866810-49866829 | Msa0332720:intron | 40.0% |
| ATTGGACCATCTTTCCAGTA+GGG | + | chr2_4:49866866-49866885 | None:intergenic | 40.0% | |
| AATTGGACCATCTTTCCAGT+AGG | + | chr2_4:49866867-49866886 | None:intergenic | 40.0% | |
| ! | CACTTTGAAGGTTGAAGAAG+TGG | - | chr2_4:49867580-49867599 | Msa0332720:CDS | 40.0% |
| ! | GAATGGACATGCTGAAGTTT+TGG | + | chr2_4:49867663-49867682 | None:intergenic | 40.0% |
| GAGAATATCCAGTGGAGACA+TGG | - | chr2_4:49865033-49865052 | Msa0332720:CDS | 45.0% | |
| AATATCCAGTGGAGACATGG+TGG | - | chr2_4:49865036-49865055 | Msa0332720:CDS | 45.0% | |
| TGGTTGACAAGACCATAGGT+GGG | + | chr2_4:49865066-49865085 | None:intergenic | 45.0% | |
| ! | GTCAACCAGCTCTTTGAAGA+AGG | - | chr2_4:49865078-49865097 | Msa0332720:CDS | 45.0% |
| ! | ACCAGCTCTTTGAAGAAGGA+AGG | - | chr2_4:49865082-49865101 | Msa0332720:intron | 45.0% |
| TCCTTCCTTCTTCAAAGAGC+TGG | + | chr2_4:49865086-49865105 | None:intergenic | 45.0% | |
| GTTTCCTCCAATGATCCTTC+TGG | + | chr2_4:49865217-49865236 | None:intergenic | 45.0% | |
| ATCAGTATCTGTGTCGTGTC+TGG | - | chr2_4:49865537-49865556 | Msa0332720:intron | 45.0% | |
| TAATTCGGAATTCGGCCGTT+TGG | + | chr2_4:49866435-49866454 | None:intergenic | 45.0% | |
| ATTTCTAATTGCAGGCAGGG+AGG | - | chr2_4:49866596-49866615 | Msa0332720:intron | 45.0% | |
| TTTCTAATTGCAGGCAGGGA+GGG | - | chr2_4:49866597-49866616 | Msa0332720:intron | 45.0% | |
| GCAGAGGAAACTCTAAGCAT+AGG | - | chr2_4:49866627-49866646 | Msa0332720:intron | 45.0% | |
| !! | AGGCATTGGGGATTCTTTGA+AGG | - | chr2_4:49866822-49866841 | Msa0332720:intron | 45.0% |
| TTGGACCATCTTTCCAGTAG+GGG | + | chr2_4:49866865-49866884 | None:intergenic | 45.0% | |
| GGAAAGATGGTCCAATTCTC+TGG | - | chr2_4:49866870-49866889 | Msa0332720:intron | 45.0% | |
| ! | ATGGTCCAATTCTCTGGCTT+GGG | - | chr2_4:49866876-49866895 | Msa0332720:intron | 45.0% |
| TTTACTGCAAGCAAAGGCCA+TGG | - | chr2_4:49867049-49867068 | Msa0332720:intron | 45.0% | |
| ! | GTGTAGGTTGACTTTGTACG+AGG | - | chr2_4:49867107-49867126 | Msa0332720:intron | 45.0% |
| TATGTGATAGGTCGGAGATG+TGG | + | chr2_4:49867358-49867377 | None:intergenic | 45.0% | |
| ! | CTTCAAAGTGTCATCCACCT+AGG | + | chr2_4:49867570-49867589 | None:intergenic | 45.0% |
| CTAGGTGGATGACACTTTGA+AGG | - | chr2_4:49867568-49867587 | Msa0332720:CDS | 45.0% | |
| GTGGAGATTTACTATGACCC+AGG | - | chr2_4:49867599-49867618 | Msa0332720:CDS | 45.0% | |
| TATGACCCAGGAGAGTTGTT+TGG | - | chr2_4:49867611-49867630 | Msa0332720:CDS | 45.0% | |
| TTTGGAGGCCTTCTATCAAG+CGG | - | chr2_4:49867629-49867648 | Msa0332720:CDS | 45.0% | |
| TGCTATCTCCGCTTGATAGA+AGG | + | chr2_4:49867640-49867659 | None:intergenic | 45.0% | |
| !!! | ATTTTTATTTATCTTTTTAA+TGG | - | chr2_4:49865658-49865677 | Msa0332720:intron | 5.0% |
| !!! | TTTTTATTTATCTTTTTAAT+GGG | - | chr2_4:49865659-49865678 | Msa0332720:intron | 5.0% |
| !!! | ATTTTTTGAATATTATTAAT+TGG | - | chr2_4:49866315-49866334 | Msa0332720:intron | 5.0% |
| TGACAAGACCATAGGTGGGA+GGG | + | chr2_4:49865062-49865081 | None:intergenic | 50.0% | |
| TTGACAAGACCATAGGTGGG+AGG | + | chr2_4:49865063-49865082 | None:intergenic | 50.0% | |
| CTGGTTGACAAGACCATAGG+TGG | + | chr2_4:49865067-49865086 | None:intergenic | 50.0% | |
| GAGCTGGTTGACAAGACCAT+AGG | + | chr2_4:49865070-49865089 | None:intergenic | 50.0% | |
| GGAATGGCCAGAAGGATCAT+TGG | - | chr2_4:49865207-49865226 | Msa0332720:intron | 50.0% | |
| ATGGCCAGAAGGATCATTGG+AGG | - | chr2_4:49865210-49865229 | Msa0332720:intron | 50.0% | |
| ! | TGGTCTTGAAGTCCTGCAAG+CGG | + | chr2_4:49865288-49865307 | None:intergenic | 50.0% |
| GGACGGACAATCATCGGATT+AGG | - | chr2_4:49865435-49865454 | Msa0332720:intron | 50.0% | |
| GATTAGGCGTGTCCTGGTAT+CGG | - | chr2_4:49865451-49865470 | Msa0332720:intron | 50.0% | |
| ! | TGATCGACTCCTATCCACCT+TGG | - | chr2_4:49865592-49865611 | Msa0332720:intron | 50.0% |
| ! | GTAGGGGCATGTCCCTTAAA+AGG | + | chr2_4:49866849-49866868 | None:intergenic | 50.0% |
| TTTAAGGGACATGCCCCTAC+TGG | - | chr2_4:49866849-49866868 | Msa0332720:intron | 50.0% | |
| ACATGCCCCTACTGGAAAGA+TGG | - | chr2_4:49866857-49866876 | Msa0332720:intron | 50.0% | |
| GATGGTCCAATTCTCTGGCT+TGG | - | chr2_4:49866875-49866894 | Msa0332720:intron | 50.0% | |
| GAGTTCCCAAGCCAGAGAAT+TGG | + | chr2_4:49866884-49866903 | None:intergenic | 50.0% | |
| AGAAAATACCCATGGGGCCA+TGG | + | chr2_4:49867069-49867088 | None:intergenic | 50.0% | |
| TGATAGGTCGGAGATGTGGT+AGG | + | chr2_4:49867354-49867373 | None:intergenic | 50.0% | |
| GACACACAAGATCCGCTTGC+AGG | - | chr2_4:49865273-49865292 | Msa0332720:intron | 55.0% | |
| ! | TCATCGGATTAGGCGTGTCC+TGG | - | chr2_4:49865445-49865464 | Msa0332720:intron | 55.0% |
| CACGACACGTTTCCGATACC+AGG | + | chr2_4:49865466-49865485 | None:intergenic | 55.0% | |
| AGAGCGGCTGCCAAGAACAT+TGG | - | chr2_4:49865937-49865956 | Msa0332720:CDS | 55.0% | |
| CAGGGAGGGATTAACTGCAG+AGG | - | chr2_4:49866611-49866630 | Msa0332720:intron | 55.0% | |
| !! | CTCTGGCTTGGGAACTCTCA+AGG | - | chr2_4:49866887-49866906 | Msa0332720:intron | 55.0% |
| GACCCAGGAGAGTTGTTTGG+AGG | - | chr2_4:49867614-49867633 | Msa0332720:CDS | 55.0% | |
| GGCCTCCAAACAACTCTCCT+GGG | + | chr2_4:49867619-49867638 | None:intergenic | 55.0% | |
| AGGCCTCCAAACAACTCTCC+TGG | + | chr2_4:49867620-49867639 | None:intergenic | 55.0% | |
| AAGCAAAGGCCATGGCCCCA+TGG | - | chr2_4:49867057-49867076 | Msa0332720:intron | 60.0% | |
| AGCAAAGGCCATGGCCCCAT+GGG | - | chr2_4:49867058-49867077 | Msa0332720:intron | 60.0% | |
| GAGGGCCACCATGTCTCCAC+TGG | + | chr2_4:49865044-49865063 | None:intergenic | 65.0% | |
| CATGGTGGCCCTCCCACCTA+TGG | - | chr2_4:49865051-49865070 | Msa0332720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 49864979 | 49867691 | 49864979 | ID=Msa0332720;Name=Msa0332720 |
| chr2_4 | mRNA | 49864979 | 49867691 | 49864979 | ID=Msa0332720-mRNA-1;Parent=Msa0332720;Name=Msa0332720-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|1|1|1|4|0|227 |
| chr2_4 | exon | 49867560 | 49867691 | 49867560 | ID=Msa0332720-mRNA-1:exon:14927;Parent=Msa0332720-mRNA-1 |
| chr2_4 | exon | 49867330 | 49867462 | 49867330 | ID=Msa0332720-mRNA-1:exon:14926;Parent=Msa0332720-mRNA-1 |
| chr2_4 | exon | 49865762 | 49866060 | 49865762 | ID=Msa0332720-mRNA-1:exon:14925;Parent=Msa0332720-mRNA-1 |
| chr2_4 | exon | 49864979 | 49865098 | 49864979 | ID=Msa0332720-mRNA-1:exon:14924;Parent=Msa0332720-mRNA-1 |
| chr2_4 | CDS | 49867560 | 49867691 | 49867560 | ID=Msa0332720-mRNA-1:cds;Parent=Msa0332720-mRNA-1 |
| chr2_4 | CDS | 49867330 | 49867462 | 49867330 | ID=Msa0332720-mRNA-1:cds;Parent=Msa0332720-mRNA-1 |
| chr2_4 | CDS | 49865762 | 49866060 | 49865762 | ID=Msa0332720-mRNA-1:cds;Parent=Msa0332720-mRNA-1 |
| chr2_4 | CDS | 49864979 | 49865098 | 49864979 | ID=Msa0332720-mRNA-1:cds;Parent=Msa0332720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
