Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214630 | XP_003596337.1 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.53e-163 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214630 | sp|P16273|PRPX_HORVU | 48.416 | 221 | 110 | 3 | 8 | 224 | 9 | 229 | 3.02e-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214630 | Q2HSC5 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 7.31e-164 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004940 | Msa0214630 | 0.801700 | 7.955833e-49 | -8.615850e-47 |
| Msa0048950 | Msa0214630 | 0.821369 | 4.187875e-53 | -8.615850e-47 |
| Msa0059880 | Msa0214630 | 0.842258 | 2.886252e-58 | -8.615850e-47 |
| Msa0072030 | Msa0214630 | 0.814921 | 1.204457e-51 | -8.615850e-47 |
| Msa0073970 | Msa0214630 | 0.841633 | 4.221857e-58 | -8.615850e-47 |
| Msa0084160 | Msa0214630 | 0.803232 | 3.846375e-49 | -8.615850e-47 |
| Msa0093530 | Msa0214630 | 0.812433 | 4.249432e-51 | -8.615850e-47 |
| Msa0107830 | Msa0214630 | 0.802196 | 6.290711e-49 | -8.615850e-47 |
| Msa0121970 | Msa0214630 | 0.851428 | 8.931834e-61 | -8.615850e-47 |
| Msa0126960 | Msa0214630 | 0.811276 | 7.590475e-51 | -8.615850e-47 |
| Msa0150910 | Msa0214630 | 0.822489 | 2.305456e-53 | -8.615850e-47 |
| Msa0166620 | Msa0214630 | 0.845477 | 3.964169e-59 | -8.615850e-47 |
| Msa0196420 | Msa0214630 | 0.819044 | 1.427586e-52 | -8.615850e-47 |
| Msa0199860 | Msa0214630 | 0.802902 | 4.500460e-49 | -8.615850e-47 |
| Msa0200090 | Msa0214630 | 0.818120 | 2.314046e-52 | -8.615850e-47 |
| Msa0207930 | Msa0214630 | 0.823144 | 1.622317e-53 | -8.615850e-47 |
| Msa0207970 | Msa0214630 | 0.835470 | 1.647401e-56 | -8.615850e-47 |
| Msa0214630 | Msa0238330 | 0.829087 | 6.261497e-55 | -8.615850e-47 |
| Msa0214630 | Msa0255010 | 0.972855 | 1.879434e-135 | -8.615850e-47 |
| Msa0214630 | Msa0291880 | 0.806517 | 7.917099e-50 | -8.615850e-47 |
| Msa0214630 | Msa0294090 | 0.871671 | 5.723495e-67 | -8.615850e-47 |
| Msa0214630 | Msa0298270 | 0.807470 | 4.976936e-50 | -8.615850e-47 |
| Msa0214630 | Msa0316230 | 0.806827 | 6.808632e-50 | -8.615850e-47 |
| Msa0214630 | Msa0320130 | 0.801326 | 9.492842e-49 | -8.615850e-47 |
| Msa0214630 | Msa0320140 | 0.809543 | 1.796516e-50 | -8.615850e-47 |
| Msa0214630 | Msa0332720 | 0.928428 | 2.928410e-92 | -8.615850e-47 |
| Msa0214630 | Msa0548970 | 0.804373 | 2.228637e-49 | -8.615850e-47 |
| Msa0214630 | Msa0591260 | -0.801631 | 8.221100e-49 | -8.615850e-47 |
| Msa0214630 | Msa0605470 | 0.808984 | 2.367492e-50 | -8.615850e-47 |
| Msa0214630 | Msa0629030 | 0.830469 | 2.885471e-55 | -8.615850e-47 |
| Msa0214630 | Msa0651820 | 0.808142 | 3.580684e-50 | -8.615850e-47 |
| Msa0214630 | Msa0657260 | 0.809011 | 2.335793e-50 | -8.615850e-47 |
| Msa0214630 | Msa0666580 | 0.826904 | 2.100195e-54 | -8.615850e-47 |
| Msa0214630 | Msa0678620 | 0.812648 | 3.814891e-51 | -8.615850e-47 |
| Msa0214630 | Msa0701490 | 0.808402 | 3.152217e-50 | -8.615850e-47 |
| Msa0214630 | Msa0701560 | 0.814003 | 1.921801e-51 | -8.615850e-47 |
| Msa0214630 | Msa0727480 | 0.810996 | 8.731623e-51 | -8.615850e-47 |
| Msa0214630 | Msa0728520 | 0.809125 | 2.208528e-50 | -8.615850e-47 |
| Msa0214630 | Msa0735280 | 0.809281 | 2.045016e-50 | -8.615850e-47 |
| Msa0214630 | Msa0747500 | 0.800183 | 1.624295e-48 | -8.615850e-47 |
| Msa0214630 | Msa0753410 | 0.802689 | 4.979181e-49 | -8.615850e-47 |
| Msa0214630 | Msa0776540 | 0.804993 | 1.654214e-49 | -8.615850e-47 |
| Msa0214630 | Msa0814230 | 0.803948 | 2.732385e-49 | -8.615850e-47 |
| Msa0214630 | Msa0883640 | 0.812025 | 5.217301e-51 | -8.615850e-47 |
| Msa0214630 | Msa0910590 | 0.813549 | 2.420120e-51 | -8.615850e-47 |
| Msa0214630 | Msa0910830 | 0.817831 | 2.688960e-52 | -8.615850e-47 |
| Msa0214630 | Msa0948430 | 0.812807 | 3.519931e-51 | -8.615850e-47 |
| Msa0214630 | Msa0951150 | 0.806540 | 7.828401e-50 | -8.615850e-47 |
| Msa0214630 | Msa0960090 | 0.813345 | 2.683432e-51 | -8.615850e-47 |
| Msa0214630 | Msa0962260 | 0.800490 | 1.406400e-48 | -8.615850e-47 |
| Msa0214630 | Msa0985250 | 0.801146 | 1.033187e-48 | -8.615850e-47 |
| Msa0214630 | Msa0985700 | 0.812538 | 4.031581e-51 | -8.615850e-47 |
| Msa0214630 | Msa0987640 | 0.802674 | 5.016036e-49 | -8.615850e-47 |
| Msa0214630 | Msa1021620 | 0.805289 | 1.434201e-49 | -8.615850e-47 |
| Msa0214630 | Msa1040330 | 0.801912 | 7.198616e-49 | -8.615850e-47 |
| Msa0214630 | Msa1083100 | 0.804429 | 2.170009e-49 | -8.615850e-47 |
| Msa0214630 | Msa1109890 | 0.806793 | 6.921691e-50 | -8.615850e-47 |
| Msa0214630 | Msa1127940 | 0.806299 | 8.800159e-50 | -8.615850e-47 |
| Msa0214630 | Msa1151070 | 0.805664 | 1.196714e-49 | -8.615850e-47 |
| Msa0214630 | Msa1165860 | 0.809393 | 1.934320e-50 | -8.615850e-47 |
| Msa0214630 | Msa1262810 | 0.802127 | 6.500943e-49 | -8.615850e-47 |
| Msa0214630 | Msa1269050 | 0.818771 | 1.646822e-52 | -8.615850e-47 |
| Msa0214630 | Msa1323030 | 0.818582 | 1.818576e-52 | -8.615850e-47 |
| Msa0214630 | Msa1329740 | 0.801832 | 7.474372e-49 | -8.615850e-47 |
| Msa0214630 | Msa1349420 | 0.807323 | 5.345800e-50 | -8.615850e-47 |
| Msa0214630 | Msa1378400 | 0.804699 | 1.905264e-49 | -8.615850e-47 |
| Msa0214630 | Msa1399430 | -0.801901 | 7.235212e-49 | -8.615850e-47 |
| Msa0214630 | Msa1412360 | 0.803218 | 3.871904e-49 | -8.615850e-47 |
| Msa0214630 | Msa1445900 | 0.803100 | 4.095603e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214630 | MtrunA17_Chr2g0315601 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.41e-167 | 461 |
| Msa0214630 | MtrunA17_Chr2g0315561 | 90.749 | 227 | 21 | 0 | 1 | 227 | 1 | 227 | 5.04e-157 | 434 |
| Msa0214630 | MtrunA17_Chr8g0359751 | 75.330 | 227 | 51 | 2 | 5 | 226 | 10 | 236 | 4.73e-126 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214630 | AT1G78780.3 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.46e-121 | 344 |
| Msa0214630 | AT1G78780.5 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.46e-121 | 344 |
| Msa0214630 | AT1G78780.2 | 69.874 | 239 | 59 | 3 | 1 | 227 | 1 | 238 | 1.52e-120 | 342 |
| Msa0214630 | AT1G78780.4 | 68.619 | 239 | 59 | 4 | 1 | 227 | 1 | 235 | 3.64e-116 | 331 |
| Msa0214630 | AT1G78780.1 | 70.455 | 176 | 40 | 2 | 64 | 227 | 1 | 176 | 1.98e-87 | 256 |
Find 61 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAAGTTCTTTGTTAA+TGG | 0.183252 | 2_1:+59187338 | Msa0214630:CDS |
| GTAAACAACTTATAATTAAT+TGG | 0.210864 | 2_1:-59189702 | None:intergenic |
| CTGAAATTGCTTTCAAGTTT+AGG | 0.246221 | 2_1:+59188821 | Msa0214630:CDS |
| CTAAACTTGAAAGCAATTTC+AGG | 0.282078 | 2_1:-59188820 | None:intergenic |
| TGCTTTCAAGTTTAGGCATT+GGG | 0.293525 | 2_1:+59188828 | Msa0214630:CDS |
| GTCTCTTCATTTGACTTGTA+TGG | 0.318507 | 2_1:-59188715 | None:intergenic |
| GTTTCCTCCAATGATCCTTC+TGG | 0.340734 | 2_1:-59187233 | None:intergenic |
| GTAGGGGCATGTCCCTTAAA+AGG | 0.343475 | 2_1:-59188865 | None:intergenic |
| TTGTATGGCTTGAAATCTTC+AGG | 0.351240 | 2_1:-59188700 | None:intergenic |
| TCCTTCCTTCTTCAAAGAGC+TGG | 0.367470 | 2_1:-59187102 | None:intergenic |
| TATGACCCAGGAGAGTTGTT+TGG | 0.376206 | 2_1:+59189629 | Msa0214630:CDS |
| GAATGGACATGCTGAAGTTT+TGG | 0.380812 | 2_1:-59189678 | None:intergenic |
| GACACACAAGATCCGCTTGC+AGG | 0.389775 | 2_1:+59187292 | Msa0214630:CDS |
| TGCTATCTCCGCTTGATAGA+AGG | 0.400178 | 2_1:-59189655 | None:intergenic |
| AGGCATTGGGGATTCTTTGA+AGG | 0.405743 | 2_1:+59188841 | Msa0214630:CDS |
| TCTTGGAAAAGCTGATTTGA+AGG | 0.414467 | 2_1:-59188758 | None:intergenic |
| GATGGTCCAATTCTCTGGCT+TGG | 0.418419 | 2_1:+59188894 | Msa0214630:CDS |
| ATGGTCCAATTCTCTGGCTT+GGG | 0.433013 | 2_1:+59188895 | Msa0214630:CDS |
| ATTTCCCATGCAAATCCTCT+TGG | 0.434442 | 2_1:-59188775 | None:intergenic |
| GAGTTCCCAAGCCAGAGAAT+TGG | 0.445368 | 2_1:-59188900 | None:intergenic |
| GGAAAGATGGTCCAATTCTC+TGG | 0.445571 | 2_1:+59188889 | Msa0214630:CDS |
| GTCAACCAGCTCTTTGAAGA+AGG | 0.445909 | 2_1:+59187097 | Msa0214630:CDS |
| TTTAAGGGACATGCCCCTAC+TGG | 0.446687 | 2_1:+59188868 | Msa0214630:CDS |
| CTAGGTGGATGACACTTTGA+AGG | 0.455213 | 2_1:+59189586 | Msa0214630:intron |
| ACTTATAATTAATTGGAGAA+TGG | 0.459539 | 2_1:-59189695 | None:intergenic |
| AGGCCTCCAAACAACTCTCC+TGG | 0.465379 | 2_1:-59189635 | None:intergenic |
| TGCAAAATGCTATTAAGTCA+TGG | 0.470507 | 2_1:+59187258 | Msa0214630:CDS |
| CACTTTGAAGGTTGAAGAAG+TGG | 0.475985 | 2_1:+59189598 | Msa0214630:CDS |
| CATGGTGGCCCTCCCACCTA+TGG | 0.478252 | 2_1:+59187070 | Msa0214630:CDS |
| GGAATGGCCAGAAGGATCAT+TGG | 0.485397 | 2_1:+59187226 | Msa0214630:intron |
| TTGCTTTCAAGTTTAGGCAT+TGG | 0.497447 | 2_1:+59188827 | Msa0214630:CDS |
| TGCTATTAAGTCATGGGAGA+TGG | 0.500588 | 2_1:+59187265 | Msa0214630:CDS |
| GACCCAGGAGAGTTGTTTGG+AGG | 0.521378 | 2_1:+59189632 | Msa0214630:CDS |
| TTTCTAATTGCAGGCAGGGA+GGG | 0.527343 | 2_1:+59188616 | Msa0214630:intron |
| GGCCTCCAAACAACTCTCCT+GGG | 0.528244 | 2_1:-59189634 | None:intergenic |
| GCAAAATGCTATTAAGTCAT+GGG | 0.533576 | 2_1:+59187259 | Msa0214630:CDS |
| ACATGCCCCTACTGGAAAGA+TGG | 0.534599 | 2_1:+59188876 | Msa0214630:CDS |
| GAGAATATCCAGTGGAGACA+TGG | 0.538003 | 2_1:+59187052 | Msa0214630:CDS |
| CTCTGGCTTGGGAACTCTCA+AGG | 0.542832 | 2_1:+59188906 | Msa0214630:CDS |
| CTGGTTGACAAGACCATAGG+TGG | 0.543209 | 2_1:-59187083 | None:intergenic |
| GAGGGCCACCATGTCTCCAC+TGG | 0.548695 | 2_1:-59187060 | None:intergenic |
| ATTGGACCATCTTTCCAGTA+GGG | 0.558086 | 2_1:-59188882 | None:intergenic |
| AATTGGACCATCTTTCCAGT+AGG | 0.570938 | 2_1:-59188883 | None:intergenic |
| ACCAGCTCTTTGAAGAAGGA+AGG | 0.578694 | 2_1:+59187101 | Msa0214630:CDS |
| GTGGAGATTTACTATGACCC+AGG | 0.582286 | 2_1:+59189617 | Msa0214630:CDS |
| GCAGAGGAAACTCTAAGCAT+AGG | 0.582569 | 2_1:+59188646 | Msa0214630:CDS |
| GCTTTCAAGTTTAGGCATTG+GGG | 0.594203 | 2_1:+59188829 | Msa0214630:CDS |
| TGACAAGACCATAGGTGGGA+GGG | 0.603232 | 2_1:-59187078 | None:intergenic |
| TTTGGAGGCCTTCTATCAAG+CGG | 0.613986 | 2_1:+59189647 | Msa0214630:CDS |
| TTGGACCATCTTTCCAGTAG+GGG | 0.615171 | 2_1:-59188881 | None:intergenic |
| ATGGCCAGAAGGATCATTGG+AGG | 0.617256 | 2_1:+59187229 | Msa0214630:CDS |
| GAGCTGGTTGACAAGACCAT+AGG | 0.618838 | 2_1:-59187086 | None:intergenic |
| AACTTGAAAGCAATTTCAGG+TGG | 0.634134 | 2_1:-59188817 | None:intergenic |
| GAAATCATTAAAGTTTACAC+AGG | 0.640637 | 2_1:+59188793 | Msa0214630:CDS |
| TGGTCTTGAAGTCCTGCAAG+CGG | 0.649941 | 2_1:-59187304 | None:intergenic |
| ATTTCTAATTGCAGGCAGGG+AGG | 0.661707 | 2_1:+59188615 | Msa0214630:intron |
| AATATCCAGTGGAGACATGG+TGG | 0.668708 | 2_1:+59187055 | Msa0214630:CDS |
| CAGGGAGGGATTAACTGCAG+AGG | 0.669645 | 2_1:+59188630 | Msa0214630:CDS |
| TTGACAAGACCATAGGTGGG+AGG | 0.674543 | 2_1:-59187079 | None:intergenic |
| ATGAAGCTGAGAATATCCAG+TGG | 0.685948 | 2_1:+59187044 | Msa0214630:CDS |
| TGGTTGACAAGACCATAGGT+GGG | 0.689395 | 2_1:-59187082 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTTAAATATAATAA+AGG | + | chr2_1:59189187-59189206 | Msa0214630:intron | 0.0% |
| !!! | GATAAAAATTATTTCAATTT+TGG | + | chr2_1:59187633-59187652 | Msa0214630:intron | 10.0% |
| !! | AATTTAAATATAATAAAGGA+AGG | + | chr2_1:59189191-59189210 | Msa0214630:intron | 10.0% |
| !! | TAAAATAAATGATAATCTAA+TGG | - | chr2_1:59189469-59189488 | None:intergenic | 10.0% |
| !!! | TTTTCTTAACAAATTTTTGT+AGG | + | chr2_1:59187205-59187224 | Msa0214630:intron | 15.0% |
| !! | TATGAATTATAATTCTATGA+AGG | + | chr2_1:59187433-59187452 | Msa0214630:intron | 15.0% |
| !! | GAATTATACAAAATTATTAG+TGG | + | chr2_1:59187524-59187543 | Msa0214630:intron | 15.0% |
| !!! | ATTGAAATAATTTTTATCCA+AGG | - | chr2_1:59187631-59187650 | None:intergenic | 15.0% |
| !! | TTAAAATGAGAAATTTAACA+TGG | - | chr2_1:59189046-59189065 | None:intergenic | 15.0% |
| !!! | TTCAAATTTCAATGTTTTTT+TGG | - | chr2_1:59189265-59189284 | None:intergenic | 15.0% |
| !!! | AACAATAATTTTTTTAACCT+AGG | + | chr2_1:59189568-59189587 | Msa0214630:intron | 15.0% |
| !! | AAAATTGAGAAAGAATTACA+TGG | - | chr2_1:59187189-59187208 | None:intergenic | 20.0% |
| !!! | TTAACAAATTTTTGTAGGAA+TGG | + | chr2_1:59187210-59187229 | Msa0214630:intron | 20.0% |
| !!! | AAATTCAAGTTCTTTGTTAA+TGG | + | chr2_1:59187338-59187357 | Msa0214630:CDS | 20.0% |
| !!! | GTAAATGATTCAAATTTGTT+TGG | + | chr2_1:59187367-59187386 | Msa0214630:intron | 20.0% |
| !! | AATTATAATTCTATGAAGGA+CGG | + | chr2_1:59187437-59187456 | Msa0214630:intron | 20.0% |
| !! | TAATATATGAAACATGGATA+CGG | - | chr2_1:59187591-59187610 | None:intergenic | 20.0% |
| !!! | TTTATCTTTTTAATGGGTTT+AGG | + | chr2_1:59187684-59187703 | Msa0214630:intron | 20.0% |
| !! | AGATTAATGAATATACCAAT+AGG | - | chr2_1:59187768-59187787 | None:intergenic | 20.0% |
| !!! | AACAGCTATATTTTTTACTT+CGG | - | chr2_1:59187913-59187932 | None:intergenic | 20.0% |
| !!! | AAGTTAGCAATGATTTTTTT+AGG | + | chr2_1:59188267-59188286 | Msa0214630:intron | 20.0% |
| !!! | AGTTAGCAATGATTTTTTTA+GGG | + | chr2_1:59188268-59188287 | Msa0214630:intron | 20.0% |
| !! | TATTATTAATTGGATTCAAG+TGG | + | chr2_1:59188344-59188363 | Msa0214630:intron | 20.0% |
| !!! | TATCAAAATTTGAGATCAAT+TGG | + | chr2_1:59188516-59188535 | Msa0214630:intron | 20.0% |
| !! | TAACTATAGAAATTAGATAC+AGG | - | chr2_1:59188546-59188565 | None:intergenic | 20.0% |
| !!! | AATTCAATATTTCTAATTGC+AGG | + | chr2_1:59188607-59188626 | Msa0214630:intron | 20.0% |
| !! | ATGATCTGAATTTAATTGTT+TGG | + | chr2_1:59188953-59188972 | Msa0214630:intron | 20.0% |
| !!! | TGAGAAATTTAAAATGATCA+AGG | - | chr2_1:59189001-59189020 | None:intergenic | 20.0% |
| !! | ATTAATAAGAAAATACCCAT+GGG | - | chr2_1:59189095-59189114 | None:intergenic | 20.0% |
| !! | AATTAATAAGAAAATACCCA+TGG | - | chr2_1:59189096-59189115 | None:intergenic | 20.0% |
| !!! | TAAATTTTAATGTTATCCCT+TGG | - | chr2_1:59189177-59189196 | None:intergenic | 20.0% |
| !! | AGTGATGTATAAAATATAGA+GGG | - | chr2_1:59189544-59189563 | None:intergenic | 20.0% |
| !! | TAGTGATGTATAAAATATAG+AGG | - | chr2_1:59189545-59189564 | None:intergenic | 20.0% |
| !!! | AATAATTTTTTTAACCTAGG+TGG | + | chr2_1:59189571-59189590 | Msa0214630:intron | 20.0% |
| ! | AAATGGAGAATAAGATTAAG+AGG | - | chr2_1:59187148-59187167 | None:intergenic | 25.0% |
| !! | CAAAGAACTTGAATTTTTCA+GGG | - | chr2_1:59187334-59187353 | None:intergenic | 25.0% |
| !! | ACAAAGAACTTGAATTTTTC+AGG | - | chr2_1:59187335-59187354 | None:intergenic | 25.0% |
| ! | CGATCATAATATATGAAACA+TGG | - | chr2_1:59187597-59187616 | None:intergenic | 25.0% |
| !! | GAAATAATTTTTATCCAAGG+TGG | - | chr2_1:59187628-59187647 | None:intergenic | 25.0% |
| !! | TTTGATTCGTCAAAAAACAA+AGG | + | chr2_1:59188197-59188216 | Msa0214630:intron | 25.0% |
| !!! | GTTAGCAATGATTTTTTTAG+GGG | + | chr2_1:59188269-59188288 | Msa0214630:intron | 25.0% |
| ! | TATTAAACTTCGATTCTAAG+AGG | - | chr2_1:59188489-59188508 | None:intergenic | 25.0% |
| ! | GAAATCATTAAAGTTTACAC+AGG | + | chr2_1:59188793-59188812 | Msa0214630:CDS | 25.0% |
| !! | TTAATTTTTACTGCAAGCAA+AGG | + | chr2_1:59189062-59189081 | Msa0214630:intron | 25.0% |
| ! | TTAATAAGAAAATACCCATG+GGG | - | chr2_1:59189094-59189113 | None:intergenic | 25.0% |
| ! | ATATGATATATGTGATAGGT+CGG | - | chr2_1:59189384-59189403 | None:intergenic | 25.0% |
| ! | AGTGATATGATATATGTGAT+AGG | - | chr2_1:59189388-59189407 | None:intergenic | 25.0% |
| ATAATCTAGAGAGGAAGAAA+TGG | - | chr2_1:59187165-59187184 | None:intergenic | 30.0% | |
| TTACATGGTATAATCTAGAG+AGG | - | chr2_1:59187174-59187193 | None:intergenic | 30.0% | |
| TGCAAAATGCTATTAAGTCA+TGG | + | chr2_1:59187258-59187277 | Msa0214630:CDS | 30.0% | |
| GCAAAATGCTATTAAGTCAT+GGG | + | chr2_1:59187259-59187278 | Msa0214630:CDS | 30.0% | |
| ! | AATTTTTATCCAAGGTGGAT+AGG | - | chr2_1:59187623-59187642 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTAAATCATCGCT+TGG | - | chr2_1:59187721-59187740 | None:intergenic | 30.0% |
| AGTAGAATACGTAGAAAACT+TGG | + | chr2_1:59187821-59187840 | Msa0214630:intron | 30.0% | |
| AAACAAAACACCAATGTTCT+TGG | - | chr2_1:59187969-59187988 | None:intergenic | 30.0% | |
| ! | CTTGTACTTTGCTTAGATTT+TGG | + | chr2_1:59188001-59188020 | Msa0214630:intron | 30.0% |
| ATTAATTGGATTCAAGTGGT+TGG | + | chr2_1:59188348-59188367 | Msa0214630:intron | 30.0% | |
| ATCAGACTATACTTACCAAA+CGG | + | chr2_1:59188436-59188455 | Msa0214630:intron | 30.0% | |
| AGTTATGGTAATTCGGAATT+CGG | - | chr2_1:59188462-59188481 | None:intergenic | 30.0% | |
| AGGAATGAGTTATGGTAATT+CGG | - | chr2_1:59188469-59188488 | None:intergenic | 30.0% | |
| ! | ATTCTAAGAGGAATGAGTTA+TGG | - | chr2_1:59188477-59188496 | None:intergenic | 30.0% |
| ! | AATATTTCTAATTGCAGGCA+GGG | + | chr2_1:59188612-59188631 | Msa0214630:intron | 30.0% |
| CTAAACTTGAAAGCAATTTC+AGG | - | chr2_1:59188823-59188842 | None:intergenic | 30.0% | |
| !! | CTGAAATTGCTTTCAAGTTT+AGG | + | chr2_1:59188821-59188840 | Msa0214630:CDS | 30.0% |
| !! | ATTCTTTGAAGGTCCTTTTA+AGG | + | chr2_1:59188852-59188871 | Msa0214630:CDS | 30.0% |
| !! | TTCTTTGAAGGTCCTTTTAA+GGG | + | chr2_1:59188853-59188872 | Msa0214630:CDS | 30.0% |
| !!! | TTAATTTGTTTTGCGTGTGT+AGG | + | chr2_1:59189110-59189129 | Msa0214630:intron | 30.0% |
| AAATAGAAAGGAAGATACCA+AGG | + | chr2_1:59189157-59189176 | Msa0214630:intron | 30.0% | |
| AATAGAAAGGAAGATACCAA+GGG | + | chr2_1:59189158-59189177 | Msa0214630:intron | 30.0% | |
| TGGAGTAAGAGAATAAAAAC+GGG | - | chr2_1:59189497-59189516 | None:intergenic | 30.0% | |
| GTGGAGTAAGAGAATAAAAA+CGG | - | chr2_1:59189498-59189517 | None:intergenic | 30.0% | |
| AAAAAGTTGTTCTCATAAGG+TGG | - | chr2_1:59189517-59189536 | None:intergenic | 30.0% | |
| GGTAAAAAGTTGTTCTCATA+AGG | - | chr2_1:59189520-59189539 | None:intergenic | 30.0% | |
| GATGTATAAAATATAGAGGG+TGG | - | chr2_1:59189541-59189560 | None:intergenic | 30.0% | |
| AGGATGTGATGATTTCACTT+TGG | - | chr2_1:59187128-59187147 | None:intergenic | 35.0% | |
| !!! | CTTGAATTTTTCAGGGACAA+TGG | - | chr2_1:59187327-59187346 | None:intergenic | 35.0% |
| ATGAAACATGGATACGGATA+CGG | - | chr2_1:59187585-59187604 | None:intergenic | 35.0% | |
| ! | TGTTTTCCAAGCGATGATTT+AGG | + | chr2_1:59187712-59187731 | Msa0214630:intron | 35.0% |
| ACAAGTGAAGGAATCACTTT+AGG | - | chr2_1:59187883-59187902 | None:intergenic | 35.0% | |
| ! | TGTTCTTTCTAGTAGTAGAG+CGG | + | chr2_1:59187940-59187959 | Msa0214630:intron | 35.0% |
| GAACAAACGATTGTGAAGAT+GGG | + | chr2_1:59188126-59188145 | Msa0214630:intron | 35.0% | |
| ! | AATTTTCCCGTTATGATGCT+GGG | + | chr2_1:59188152-59188171 | Msa0214630:intron | 35.0% |
| ATTCAAACCCAGCATCATAA+CGG | - | chr2_1:59188162-59188181 | None:intergenic | 35.0% | |
| ! | CAATATTTCTAATTGCAGGC+AGG | + | chr2_1:59188611-59188630 | Msa0214630:intron | 35.0% |
| TTGTATGGCTTGAAATCTTC+AGG | - | chr2_1:59188703-59188722 | None:intergenic | 35.0% | |
| !! | GTCTCTTCATTTGACTTGTA+TGG | - | chr2_1:59188718-59188737 | None:intergenic | 35.0% |
| !! | TCTTGGAAAAGCTGATTTGA+AGG | - | chr2_1:59188761-59188780 | None:intergenic | 35.0% |
| ! | TTCAAATCAGCTTTTCCAAG+AGG | + | chr2_1:59188760-59188779 | Msa0214630:CDS | 35.0% |
| ! | TTTTCCAAGAGGATTTGCAT+GGG | + | chr2_1:59188771-59188790 | Msa0214630:CDS | 35.0% |
| AACTTGAAAGCAATTTCAGG+TGG | - | chr2_1:59188820-59188839 | None:intergenic | 35.0% | |
| !! | TTGCTTTCAAGTTTAGGCAT+TGG | + | chr2_1:59188827-59188846 | Msa0214630:CDS | 35.0% |
| !! | TGCTTTCAAGTTTAGGCATT+GGG | + | chr2_1:59188828-59188847 | Msa0214630:CDS | 35.0% |
| GAGGCTGTAATCAAATAGAA+AGG | + | chr2_1:59189145-59189164 | Msa0214630:intron | 35.0% | |
| AGTAAGAGAATAAAAACGGG+TGG | - | chr2_1:59189494-59189513 | None:intergenic | 35.0% | |
| ATGAAGCTGAGAATATCCAG+TGG | + | chr2_1:59187044-59187063 | Msa0214630:CDS | 40.0% | |
| ! | TTTTTGTAGGAATGGCCAGA+AGG | + | chr2_1:59187218-59187237 | Msa0214630:intron | 40.0% |
| TGCTATTAAGTCATGGGAGA+TGG | + | chr2_1:59187265-59187284 | Msa0214630:CDS | 40.0% | |
| TATGAAGGACGGACAATCAT+CGG | + | chr2_1:59187448-59187467 | Msa0214630:intron | 40.0% | |
| ! | AATTCAGTTCGTGTCGTTGT+CGG | - | chr2_1:59187509-59187528 | None:intergenic | 40.0% |
| GCTTACATCATCGATCCTAT+TGG | + | chr2_1:59187750-59187769 | Msa0214630:intron | 40.0% | |
| TTCGGATGATACACAAGTGA+AGG | - | chr2_1:59187895-59187914 | None:intergenic | 40.0% | |
| CGCATGTAAGAGACTTTGTA+TGG | + | chr2_1:59188089-59188108 | Msa0214630:intron | 40.0% | |
| CGAACAAACGATTGTGAAGA+TGG | + | chr2_1:59188125-59188144 | Msa0214630:intron | 40.0% | |
| ! | GAATTTTCCCGTTATGATGC+TGG | + | chr2_1:59188151-59188170 | Msa0214630:intron | 40.0% |
| TTCAAACCCAGCATCATAAC+GGG | - | chr2_1:59188161-59188180 | None:intergenic | 40.0% | |
| CCTGAACGATTTGTCTTTGA+TGG | - | chr2_1:59188382-59188401 | None:intergenic | 40.0% | |
| CCATCAAAGACAAATCGTTC+AGG | + | chr2_1:59188379-59188398 | Msa0214630:intron | 40.0% | |
| GGAGAATGAGTTCGATTTCT+AGG | + | chr2_1:59188400-59188419 | Msa0214630:intron | 40.0% | |
| ! | CTTTTCCAAGAGGATTTGCA+TGG | + | chr2_1:59188770-59188789 | Msa0214630:CDS | 40.0% |
| ATTTCCCATGCAAATCCTCT+TGG | - | chr2_1:59188778-59188797 | None:intergenic | 40.0% | |
| !! | GCTTTCAAGTTTAGGCATTG+GGG | + | chr2_1:59188829-59188848 | Msa0214630:CDS | 40.0% |
| ATTGGACCATCTTTCCAGTA+GGG | - | chr2_1:59188885-59188904 | None:intergenic | 40.0% | |
| AATTGGACCATCTTTCCAGT+AGG | - | chr2_1:59188886-59188905 | None:intergenic | 40.0% | |
| ! | CACTTTGAAGGTTGAAGAAG+TGG | + | chr2_1:59189598-59189617 | Msa0214630:CDS | 40.0% |
| ! | GAATGGACATGCTGAAGTTT+TGG | - | chr2_1:59189681-59189700 | None:intergenic | 40.0% |
| GAGAATATCCAGTGGAGACA+TGG | + | chr2_1:59187052-59187071 | Msa0214630:CDS | 45.0% | |
| AATATCCAGTGGAGACATGG+TGG | + | chr2_1:59187055-59187074 | Msa0214630:CDS | 45.0% | |
| TGGTTGACAAGACCATAGGT+GGG | - | chr2_1:59187085-59187104 | None:intergenic | 45.0% | |
| ! | GTCAACCAGCTCTTTGAAGA+AGG | + | chr2_1:59187097-59187116 | Msa0214630:CDS | 45.0% |
| ! | ACCAGCTCTTTGAAGAAGGA+AGG | + | chr2_1:59187101-59187120 | Msa0214630:CDS | 45.0% |
| TCCTTCCTTCTTCAAAGAGC+TGG | - | chr2_1:59187105-59187124 | None:intergenic | 45.0% | |
| GTTTCCTCCAATGATCCTTC+TGG | - | chr2_1:59187236-59187255 | None:intergenic | 45.0% | |
| ATCAGTATCTGTGTCGTGTC+TGG | + | chr2_1:59187556-59187575 | Msa0214630:intron | 45.0% | |
| TAATTCGGAATTCGGCCGTT+TGG | - | chr2_1:59188454-59188473 | None:intergenic | 45.0% | |
| ATTTCTAATTGCAGGCAGGG+AGG | + | chr2_1:59188615-59188634 | Msa0214630:intron | 45.0% | |
| TTTCTAATTGCAGGCAGGGA+GGG | + | chr2_1:59188616-59188635 | Msa0214630:intron | 45.0% | |
| GCAGAGGAAACTCTAAGCAT+AGG | + | chr2_1:59188646-59188665 | Msa0214630:CDS | 45.0% | |
| !! | AGGCATTGGGGATTCTTTGA+AGG | + | chr2_1:59188841-59188860 | Msa0214630:CDS | 45.0% |
| TTGGACCATCTTTCCAGTAG+GGG | - | chr2_1:59188884-59188903 | None:intergenic | 45.0% | |
| GGAAAGATGGTCCAATTCTC+TGG | + | chr2_1:59188889-59188908 | Msa0214630:CDS | 45.0% | |
| ! | ATGGTCCAATTCTCTGGCTT+GGG | + | chr2_1:59188895-59188914 | Msa0214630:CDS | 45.0% |
| TTTACTGCAAGCAAAGGCCA+TGG | + | chr2_1:59189068-59189087 | Msa0214630:intron | 45.0% | |
| ! | GTGTAGGTTGACTTTGTACG+AGG | + | chr2_1:59189126-59189145 | Msa0214630:intron | 45.0% |
| TATGTGATAGGTCGGAGATG+TGG | - | chr2_1:59189376-59189395 | None:intergenic | 45.0% | |
| ! | CTTCAAAGTGTCATCCACCT+AGG | - | chr2_1:59189588-59189607 | None:intergenic | 45.0% |
| CTAGGTGGATGACACTTTGA+AGG | + | chr2_1:59189586-59189605 | Msa0214630:intron | 45.0% | |
| GTGGAGATTTACTATGACCC+AGG | + | chr2_1:59189617-59189636 | Msa0214630:CDS | 45.0% | |
| TATGACCCAGGAGAGTTGTT+TGG | + | chr2_1:59189629-59189648 | Msa0214630:CDS | 45.0% | |
| TTTGGAGGCCTTCTATCAAG+CGG | + | chr2_1:59189647-59189666 | Msa0214630:CDS | 45.0% | |
| TGCTATCTCCGCTTGATAGA+AGG | - | chr2_1:59189658-59189677 | None:intergenic | 45.0% | |
| !!! | ATTTTTATTTATCTTTTTAA+TGG | + | chr2_1:59187677-59187696 | Msa0214630:intron | 5.0% |
| !!! | TTTTTATTTATCTTTTTAAT+GGG | + | chr2_1:59187678-59187697 | Msa0214630:intron | 5.0% |
| !!! | ATTTTTTGAATATTATTAAT+TGG | + | chr2_1:59188334-59188353 | Msa0214630:intron | 5.0% |
| TGACAAGACCATAGGTGGGA+GGG | - | chr2_1:59187081-59187100 | None:intergenic | 50.0% | |
| TTGACAAGACCATAGGTGGG+AGG | - | chr2_1:59187082-59187101 | None:intergenic | 50.0% | |
| CTGGTTGACAAGACCATAGG+TGG | - | chr2_1:59187086-59187105 | None:intergenic | 50.0% | |
| GAGCTGGTTGACAAGACCAT+AGG | - | chr2_1:59187089-59187108 | None:intergenic | 50.0% | |
| GGAATGGCCAGAAGGATCAT+TGG | + | chr2_1:59187226-59187245 | Msa0214630:intron | 50.0% | |
| ATGGCCAGAAGGATCATTGG+AGG | + | chr2_1:59187229-59187248 | Msa0214630:CDS | 50.0% | |
| ! | TGGTCTTGAAGTCCTGCAAG+CGG | - | chr2_1:59187307-59187326 | None:intergenic | 50.0% |
| GGACGGACAATCATCGGATT+AGG | + | chr2_1:59187454-59187473 | Msa0214630:intron | 50.0% | |
| GATTAGGCGTGTCCTGGTAT+CGG | + | chr2_1:59187470-59187489 | Msa0214630:intron | 50.0% | |
| CACGACACATTTCCGATACC+AGG | - | chr2_1:59187485-59187504 | None:intergenic | 50.0% | |
| ! | TGATCGACTCCTATCCACCT+TGG | + | chr2_1:59187611-59187630 | Msa0214630:intron | 50.0% |
| ! | GTAGGGGCATGTCCCTTAAA+AGG | - | chr2_1:59188868-59188887 | None:intergenic | 50.0% |
| TTTAAGGGACATGCCCCTAC+TGG | + | chr2_1:59188868-59188887 | Msa0214630:CDS | 50.0% | |
| ACATGCCCCTACTGGAAAGA+TGG | + | chr2_1:59188876-59188895 | Msa0214630:CDS | 50.0% | |
| GATGGTCCAATTCTCTGGCT+TGG | + | chr2_1:59188894-59188913 | Msa0214630:CDS | 50.0% | |
| GAGTTCCCAAGCCAGAGAAT+TGG | - | chr2_1:59188903-59188922 | None:intergenic | 50.0% | |
| AGAAAATACCCATGGGGCCA+TGG | - | chr2_1:59189088-59189107 | None:intergenic | 50.0% | |
| TGATAGGTCGGAGATGTGGT+AGG | - | chr2_1:59189372-59189391 | None:intergenic | 50.0% | |
| GACACACAAGATCCGCTTGC+AGG | + | chr2_1:59187292-59187311 | Msa0214630:CDS | 55.0% | |
| ! | TCATCGGATTAGGCGTGTCC+TGG | + | chr2_1:59187464-59187483 | Msa0214630:intron | 55.0% |
| AGAGCGGCTGCCAAGAACAT+TGG | + | chr2_1:59187956-59187975 | Msa0214630:intron | 55.0% | |
| CAGGGAGGGATTAACTGCAG+AGG | + | chr2_1:59188630-59188649 | Msa0214630:CDS | 55.0% | |
| !! | CTCTGGCTTGGGAACTCTCA+AGG | + | chr2_1:59188906-59188925 | Msa0214630:CDS | 55.0% |
| GACCCAGGAGAGTTGTTTGG+AGG | + | chr2_1:59189632-59189651 | Msa0214630:CDS | 55.0% | |
| GGCCTCCAAACAACTCTCCT+GGG | - | chr2_1:59189637-59189656 | None:intergenic | 55.0% | |
| AGGCCTCCAAACAACTCTCC+TGG | - | chr2_1:59189638-59189657 | None:intergenic | 55.0% | |
| AAGCAAAGGCCATGGCCCCA+TGG | + | chr2_1:59189076-59189095 | Msa0214630:intron | 60.0% | |
| AGCAAAGGCCATGGCCCCAT+GGG | + | chr2_1:59189077-59189096 | Msa0214630:intron | 60.0% | |
| GAGGGCCACCATGTCTCCAC+TGG | - | chr2_1:59187063-59187082 | None:intergenic | 65.0% | |
| CATGGTGGCCCTCCCACCTA+TGG | + | chr2_1:59187070-59187089 | Msa0214630:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 59186998 | 59189709 | 59186998 | ID=Msa0214630;Name=Msa0214630 |
| chr2_1 | mRNA | 59186998 | 59189709 | 59186998 | ID=Msa0214630-mRNA-1;Parent=Msa0214630;Name=Msa0214630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|1|1|1|4|0|227 |
| chr2_1 | exon | 59186998 | 59187129 | 59186998 | ID=Msa0214630-mRNA-1:exon:16265;Parent=Msa0214630-mRNA-1 |
| chr2_1 | exon | 59187227 | 59187359 | 59187227 | ID=Msa0214630-mRNA-1:exon:16266;Parent=Msa0214630-mRNA-1 |
| chr2_1 | exon | 59188629 | 59188927 | 59188629 | ID=Msa0214630-mRNA-1:exon:16267;Parent=Msa0214630-mRNA-1 |
| chr2_1 | exon | 59189590 | 59189709 | 59189590 | ID=Msa0214630-mRNA-1:exon:16268;Parent=Msa0214630-mRNA-1 |
| chr2_1 | CDS | 59186998 | 59187129 | 59186998 | ID=Msa0214630-mRNA-1:cds;Parent=Msa0214630-mRNA-1 |
| chr2_1 | CDS | 59187227 | 59187359 | 59187227 | ID=Msa0214630-mRNA-1:cds;Parent=Msa0214630-mRNA-1 |
| chr2_1 | CDS | 59188629 | 59188927 | 59188629 | ID=Msa0214630-mRNA-1:cds;Parent=Msa0214630-mRNA-1 |
| chr2_1 | CDS | 59189590 | 59189709 | 59189590 | ID=Msa0214630-mRNA-1:cds;Parent=Msa0214630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
