Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294090 | XP_003596337.1 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.53e-163 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294090 | sp|P16273|PRPX_HORVU | 48.416 | 221 | 110 | 3 | 8 | 224 | 9 | 229 | 3.02e-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294090 | Q2HSC5 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 7.31e-164 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0294090 | 0.808159 | 3.551694e-50 | -8.615850e-47 |
| Msa0059880 | Msa0294090 | 0.821122 | 4.774894e-53 | -8.615850e-47 |
| Msa0073970 | Msa0294090 | 0.800562 | 1.359742e-48 | -8.615850e-47 |
| Msa0095910 | Msa0294090 | 0.802057 | 6.721053e-49 | -8.615850e-47 |
| Msa0107830 | Msa0294090 | 0.801159 | 1.026727e-48 | -8.615850e-47 |
| Msa0121970 | Msa0294090 | 0.802662 | 5.044194e-49 | -8.615850e-47 |
| Msa0150910 | Msa0294090 | 0.814403 | 1.568673e-51 | -8.615850e-47 |
| Msa0166620 | Msa0294090 | 0.805328 | 1.407840e-49 | -8.615850e-47 |
| Msa0200090 | Msa0294090 | 0.824807 | 6.607926e-54 | -8.615850e-47 |
| Msa0207970 | Msa0294090 | 0.824339 | 8.514753e-54 | -8.615850e-47 |
| Msa0214630 | Msa0294090 | 0.871671 | 5.723495e-67 | -8.615850e-47 |
| Msa0255010 | Msa0294090 | 0.886859 | 2.368810e-72 | -8.615850e-47 |
| Msa0294090 | Msa0320130 | 0.806078 | 9.796667e-50 | -8.615850e-47 |
| Msa0294090 | Msa0320140 | 0.820540 | 6.499452e-53 | -8.615850e-47 |
| Msa0294090 | Msa0324810 | 0.809978 | 1.448109e-50 | -8.615850e-47 |
| Msa0294090 | Msa0332720 | 0.850998 | 1.181737e-60 | -8.615850e-47 |
| Msa0294090 | Msa0353010 | 0.809781 | 1.597177e-50 | -8.615850e-47 |
| Msa0294090 | Msa0417400 | 0.804876 | 1.750367e-49 | -8.615850e-47 |
| Msa0294090 | Msa0493870 | 0.804731 | 1.876434e-49 | -8.615850e-47 |
| Msa0294090 | Msa0531800 | 0.802469 | 5.527020e-49 | -8.615850e-47 |
| Msa0294090 | Msa0535570 | 0.811546 | 6.632303e-51 | -8.615850e-47 |
| Msa0294090 | Msa0588730 | 0.807368 | 5.229377e-50 | -8.615850e-47 |
| Msa0294090 | Msa0629030 | 0.814104 | 1.826287e-51 | -8.615850e-47 |
| Msa0294090 | Msa0651820 | 0.809246 | 2.080528e-50 | -8.615850e-47 |
| Msa0294090 | Msa0666580 | 0.815591 | 8.548453e-52 | -8.615850e-47 |
| Msa0294090 | Msa0694320 | 0.808591 | 2.873069e-50 | -8.615850e-47 |
| Msa0294090 | Msa0727230 | 0.803424 | 3.510009e-49 | -8.615850e-47 |
| Msa0294090 | Msa0750790 | 0.806446 | 8.193390e-50 | -8.615850e-47 |
| Msa0294090 | Msa0750830 | 0.802318 | 5.937859e-49 | -8.615850e-47 |
| Msa0294090 | Msa0831310 | 0.811635 | 6.343683e-51 | -8.615850e-47 |
| Msa0294090 | Msa0833230 | 0.801907 | 7.215993e-49 | -8.615850e-47 |
| Msa0294090 | Msa0976400 | 0.803825 | 2.897178e-49 | -8.615850e-47 |
| Msa0294090 | Msa1023430 | 0.825658 | 4.157219e-54 | -8.615850e-47 |
| Msa0294090 | Msa1087210 | 0.806695 | 7.260752e-50 | -8.615850e-47 |
| Msa0294090 | Msa1107510 | 0.820432 | 6.881235e-53 | -8.615850e-47 |
| Msa0294090 | Msa1123000 | 0.806673 | 7.338764e-50 | -8.615850e-47 |
| Msa0294090 | Msa1151070 | 0.819083 | 1.399218e-52 | -8.615850e-47 |
| Msa0294090 | Msa1157200 | 0.815499 | 8.960152e-52 | -8.615850e-47 |
| Msa0294090 | Msa1254870 | 0.800247 | 1.575895e-48 | -8.615850e-47 |
| Msa0294090 | Msa1340440 | 0.800562 | 1.359711e-48 | -8.615850e-47 |
| Msa0294090 | Msa1349420 | 0.816313 | 5.897302e-52 | -8.615850e-47 |
| Msa0294090 | Msa1412360 | 0.803834 | 2.885341e-49 | -8.615850e-47 |
| Msa0294090 | Msa1464140 | 0.814254 | 1.692139e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294090 | MtrunA17_Chr2g0315601 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.41e-167 | 461 |
| Msa0294090 | MtrunA17_Chr2g0315561 | 90.749 | 227 | 21 | 0 | 1 | 227 | 1 | 227 | 5.04e-157 | 434 |
| Msa0294090 | MtrunA17_Chr8g0359751 | 75.330 | 227 | 51 | 2 | 5 | 226 | 10 | 236 | 4.73e-126 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294090 | AT1G78780.3 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.46e-121 | 344 |
| Msa0294090 | AT1G78780.5 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.46e-121 | 344 |
| Msa0294090 | AT1G78780.2 | 69.874 | 239 | 59 | 3 | 1 | 227 | 1 | 238 | 1.52e-120 | 342 |
| Msa0294090 | AT1G78780.4 | 68.619 | 239 | 59 | 4 | 1 | 227 | 1 | 235 | 3.64e-116 | 331 |
| Msa0294090 | AT1G78780.1 | 70.455 | 176 | 40 | 2 | 64 | 227 | 1 | 176 | 1.98e-87 | 256 |
Find 61 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAAGTTCTTTGTTAA+TGG | 0.183252 | 2_3:+45684439 | Msa0294090:CDS |
| GTAAACAACTTATGATTAAT+TGG | 0.225426 | 2_3:-45686719 | None:intergenic |
| CTGAAATTGCTTTCAAGTTT+AGG | 0.246221 | 2_3:+45685832 | Msa0294090:CDS |
| CTAAACTTGAAAGCAATTTC+AGG | 0.282078 | 2_3:-45685831 | None:intergenic |
| TGCTTTCAAGTTTAGGCATT+GGG | 0.293525 | 2_3:+45685839 | Msa0294090:CDS |
| GTCTCTTCATTTGACTTGTA+TGG | 0.318507 | 2_3:-45685726 | None:intergenic |
| GTTTCCTCCAATGATCCTTC+TGG | 0.340734 | 2_3:-45684334 | None:intergenic |
| GTAGGGGCATGTCCCTTAAA+AGG | 0.343475 | 2_3:-45685876 | None:intergenic |
| TTGTATGGCTTGAAATCTTC+AGG | 0.351240 | 2_3:-45685711 | None:intergenic |
| TCCTTCCTTCTTCAAAGAGC+TGG | 0.367470 | 2_3:-45684207 | None:intergenic |
| TATGACCCAGGAGAGTTGTT+TGG | 0.376206 | 2_3:+45686646 | Msa0294090:CDS |
| GACGCACAAGATCCGCTTGC+AGG | 0.378288 | 2_3:+45684393 | Msa0294090:CDS |
| GAATGGACATGCTGAAGTTT+TGG | 0.380812 | 2_3:-45686695 | None:intergenic |
| TGCTATCTCCGCTTGATAGA+AGG | 0.400178 | 2_3:-45686672 | None:intergenic |
| AGGCATTGGGGATTCTTTGA+AGG | 0.405743 | 2_3:+45685852 | Msa0294090:CDS |
| TCTTGGAAAAGCTGATTTGA+AGG | 0.414467 | 2_3:-45685769 | None:intergenic |
| GATGGTCCAATTCTCTGGCT+TGG | 0.418419 | 2_3:+45685905 | Msa0294090:CDS |
| ATGGTCCAATTCTCTGGCTT+GGG | 0.433013 | 2_3:+45685906 | Msa0294090:CDS |
| ATTTCCCATGCAAATCCTCT+TGG | 0.434442 | 2_3:-45685786 | None:intergenic |
| GAGTTCCCAAGCCAGAGAAT+TGG | 0.445368 | 2_3:-45685911 | None:intergenic |
| GGAAAGATGGTCCAATTCTC+TGG | 0.445571 | 2_3:+45685900 | Msa0294090:CDS |
| GTCAACCAGCTCTTTGAAGA+AGG | 0.445909 | 2_3:+45684202 | Msa0294090:CDS |
| TTTAAGGGACATGCCCCTAC+TGG | 0.446687 | 2_3:+45685879 | Msa0294090:CDS |
| CTAGGTGGATGACACTTTGA+AGG | 0.455213 | 2_3:+45686603 | Msa0294090:intron |
| AGGCCTCCAAACAACTCTCC+TGG | 0.465379 | 2_3:-45686652 | None:intergenic |
| ACTTATGATTAATTGGAGAA+TGG | 0.470422 | 2_3:-45686712 | None:intergenic |
| TGCAAAATGCTATTAAGTCA+TGG | 0.470507 | 2_3:+45684359 | Msa0294090:CDS |
| CACTTTGAAGGTTGAAGAAG+TGG | 0.475985 | 2_3:+45686615 | Msa0294090:CDS |
| GGAATGGCCAGAAGGATCAT+TGG | 0.485397 | 2_3:+45684327 | Msa0294090:intron |
| TTGCTTTCAAGTTTAGGCAT+TGG | 0.497447 | 2_3:+45685838 | Msa0294090:CDS |
| TGCTATTAAGTCATGGGAGA+TGG | 0.500588 | 2_3:+45684366 | Msa0294090:CDS |
| CATGGAGGCCCTCCCACCTA+TGG | 0.501971 | 2_3:+45684175 | Msa0294090:CDS |
| GAGAATATCCAGTGGAGACA+TGG | 0.509016 | 2_3:+45684157 | Msa0294090:CDS |
| GAGGGCCTCCATGTCTCCAC+TGG | 0.517547 | 2_3:-45684165 | None:intergenic |
| GACCCAGGAGAGTTGTTTGG+AGG | 0.521378 | 2_3:+45686649 | Msa0294090:CDS |
| TTTCTAATTGCAGGCAGGGA+GGG | 0.527343 | 2_3:+45685627 | Msa0294090:intron |
| GGCCTCCAAACAACTCTCCT+GGG | 0.528244 | 2_3:-45686651 | None:intergenic |
| GCAAAATGCTATTAAGTCAT+GGG | 0.533576 | 2_3:+45684360 | Msa0294090:CDS |
| ACATGCCCCTACTGGAAAGA+TGG | 0.534599 | 2_3:+45685887 | Msa0294090:CDS |
| CTCTGGCTTGGGAACTCTCA+AGG | 0.542832 | 2_3:+45685917 | Msa0294090:CDS |
| CTGGTTGACAAGACCATAGG+TGG | 0.543209 | 2_3:-45684188 | None:intergenic |
| ATTGGACCATCTTTCCAGTA+GGG | 0.558086 | 2_3:-45685893 | None:intergenic |
| AATTGGACCATCTTTCCAGT+AGG | 0.570938 | 2_3:-45685894 | None:intergenic |
| ACCAGCTCTTTGAAGAAGGA+AGG | 0.578694 | 2_3:+45684206 | Msa0294090:CDS |
| GTGGAGATTTACTATGACCC+AGG | 0.582286 | 2_3:+45686634 | Msa0294090:CDS |
| GCAGAGGAAACTCTAAGCAT+AGG | 0.582569 | 2_3:+45685657 | Msa0294090:CDS |
| GCTTTCAAGTTTAGGCATTG+GGG | 0.594203 | 2_3:+45685840 | Msa0294090:CDS |
| TGACAAGACCATAGGTGGGA+GGG | 0.603232 | 2_3:-45684183 | None:intergenic |
| TTTGGAGGCCTTCTATCAAG+CGG | 0.613986 | 2_3:+45686664 | Msa0294090:CDS |
| TTGGACCATCTTTCCAGTAG+GGG | 0.615171 | 2_3:-45685892 | None:intergenic |
| ATGGCCAGAAGGATCATTGG+AGG | 0.617256 | 2_3:+45684330 | Msa0294090:CDS |
| GAGCTGGTTGACAAGACCAT+AGG | 0.618838 | 2_3:-45684191 | None:intergenic |
| AACTTGAAAGCAATTTCAGG+TGG | 0.634134 | 2_3:-45685828 | None:intergenic |
| GAAATCATTAAAGTTTACAC+AGG | 0.640637 | 2_3:+45685804 | Msa0294090:CDS |
| TGGTCTTGAAGTCCTGCAAG+CGG | 0.649941 | 2_3:-45684405 | None:intergenic |
| ATTTCTAATTGCAGGCAGGG+AGG | 0.661707 | 2_3:+45685626 | Msa0294090:intron |
| CAGGGAGGGATTAACTGCAG+AGG | 0.669645 | 2_3:+45685641 | Msa0294090:CDS |
| TTGACAAGACCATAGGTGGG+AGG | 0.674543 | 2_3:-45684184 | None:intergenic |
| AATATCCAGTGGAGACATGG+AGG | 0.675076 | 2_3:+45684160 | Msa0294090:CDS |
| ATGAAGCTGAGAATATCCAG+TGG | 0.685948 | 2_3:+45684149 | Msa0294090:CDS |
| TGGTTGACAAGACCATAGGT+GGG | 0.689395 | 2_3:-45684187 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTTAAATATAATAA+AGG | + | chr2_3:45686195-45686214 | Msa0294090:intron | 0.0% |
| !!! | TTTTTTTAACAAATTTTTGT+AGG | + | chr2_3:45684306-45684325 | Msa0294090:intron | 10.0% |
| !!! | ATTTAAATAATTTTTATCCA+AGG | - | chr2_3:45684748-45684767 | None:intergenic | 10.0% |
| !!! | AAAAATTATTTAAATTTTGG+TGG | + | chr2_3:45684753-45684772 | Msa0294090:intron | 10.0% |
| !!! | AAAATTATTTAAATTTTGGT+GGG | + | chr2_3:45684754-45684773 | Msa0294090:intron | 10.0% |
| !! | AATTTAAATATAATAAAGGA+AGG | + | chr2_3:45686199-45686218 | Msa0294090:intron | 10.0% |
| !! | TAAAATAAATGATAATCTAA+TGG | - | chr2_3:45686478-45686497 | None:intergenic | 10.0% |
| !! | AAGTTAATGAATATACTAAT+AGG | - | chr2_3:45684911-45684930 | None:intergenic | 15.0% |
| !! | TTAAAATGAGAAATTTAACA+TGG | - | chr2_3:45686057-45686076 | None:intergenic | 15.0% |
| !!! | TTCAAATTTCAATGTTTTTT+TGG | - | chr2_3:45686274-45686293 | None:intergenic | 15.0% |
| !! | ATTTGAAAGAAAATGATAAA+AGG | + | chr2_3:45686287-45686306 | Msa0294090:intron | 15.0% |
| !! | AAAATTGAGAAAGAATTACA+TGG | - | chr2_3:45684290-45684309 | None:intergenic | 20.0% |
| !!! | TTAACAAATTTTTGTAGGAA+TGG | + | chr2_3:45684311-45684330 | Msa0294090:intron | 20.0% |
| !!! | AAATTCAAGTTCTTTGTTAA+TGG | + | chr2_3:45684439-45684458 | Msa0294090:CDS | 20.0% |
| !!! | TAAATAATTTTTATCCAAGG+TGG | - | chr2_3:45684745-45684764 | None:intergenic | 20.0% |
| !!! | TTTCTCTTTTTAATCAGTTT+AGG | + | chr2_3:45684801-45684820 | Msa0294090:intron | 20.0% |
| !!! | AACAGCTATAATTTTTACTT+CGG | - | chr2_3:45685007-45685026 | None:intergenic | 20.0% |
| !!! | AAGTTAGCTATGATTTTTTT+AGG | + | chr2_3:45685278-45685297 | Msa0294090:intron | 20.0% |
| !!! | AGTTAGCTATGATTTTTTTA+GGG | + | chr2_3:45685279-45685298 | Msa0294090:intron | 20.0% |
| !! | TATTATTAATTGGATTCAAG+TGG | + | chr2_3:45685355-45685374 | Msa0294090:intron | 20.0% |
| !! | TAACTATAGAAATTAGATAC+AGG | - | chr2_3:45685557-45685576 | None:intergenic | 20.0% |
| !!! | AATTCAATATTTCTAATTGC+AGG | + | chr2_3:45685618-45685637 | Msa0294090:intron | 20.0% |
| !! | ATGATCTGAATTTAATTGTT+TGG | + | chr2_3:45685964-45685983 | Msa0294090:intron | 20.0% |
| !!! | TGAGAAATTTAAAATGATCA+AGG | - | chr2_3:45686012-45686031 | None:intergenic | 20.0% |
| !! | ATTAATAAGAAAATACCCAT+GGG | - | chr2_3:45686106-45686125 | None:intergenic | 20.0% |
| !! | AATTAATAAGAAAATACCCA+TGG | - | chr2_3:45686107-45686126 | None:intergenic | 20.0% |
| !!! | TAAATTTTAATGTTATCCCT+TGG | - | chr2_3:45686185-45686204 | None:intergenic | 20.0% |
| !! | AGTGATGTATAAAATATAGA+GGG | - | chr2_3:45686553-45686572 | None:intergenic | 20.0% |
| !! | TAGTGATGTATAAAATATAG+AGG | - | chr2_3:45686554-45686573 | None:intergenic | 20.0% |
| !!! | GAACAATAATTTTTTAACCT+AGG | + | chr2_3:45686585-45686604 | Msa0294090:intron | 20.0% |
| !! | CAAAGAACTTGAATTTTTCA+GGG | - | chr2_3:45684435-45684454 | None:intergenic | 25.0% |
| !! | ACAAAGAACTTGAATTTTTC+AGG | - | chr2_3:45684436-45684455 | None:intergenic | 25.0% |
| !! | GTGAATGATTCAAATTTGTT+TGG | + | chr2_3:45684468-45684487 | Msa0294090:intron | 25.0% |
| ! | TAATACATGAAACACTGATA+TGG | - | chr2_3:45684708-45684727 | None:intergenic | 25.0% |
| !! | GAAAAATAAGTTTTTCCTCA+CGG | + | chr2_3:45684851-45684870 | Msa0294090:intron | 25.0% |
| !! | TTTGATTCGTCAAAAAACAA+AGG | + | chr2_3:45685208-45685227 | Msa0294090:intron | 25.0% |
| !!! | GTTAGCTATGATTTTTTTAG+GGG | + | chr2_3:45685280-45685299 | Msa0294090:intron | 25.0% |
| ! | GAAATCATTAAAGTTTACAC+AGG | + | chr2_3:45685804-45685823 | Msa0294090:CDS | 25.0% |
| !! | TTAATTTTTACTGCAAGCAA+AGG | + | chr2_3:45686073-45686092 | Msa0294090:intron | 25.0% |
| ! | TTAATAAGAAAATACCCATG+GGG | - | chr2_3:45686105-45686124 | None:intergenic | 25.0% |
| ! | ATATGATATATGTGATAGGT+CGG | - | chr2_3:45686393-45686412 | None:intergenic | 25.0% |
| ! | AGTGATATGATATATGTGAT+AGG | - | chr2_3:45686397-45686416 | None:intergenic | 25.0% |
| !!! | CAATAATTTTTTAACCTAGG+TGG | + | chr2_3:45686588-45686607 | Msa0294090:intron | 25.0% |
| GAGAAGGAATAAGATTAAGA+GGG | - | chr2_3:45684250-45684269 | None:intergenic | 30.0% | |
| AGAGAAGGAATAAGATTAAG+AGG | - | chr2_3:45684251-45684270 | None:intergenic | 30.0% | |
| TTACATGGTATAATCTAGAG+AGG | - | chr2_3:45684275-45684294 | None:intergenic | 30.0% | |
| TGCAAAATGCTATTAAGTCA+TGG | + | chr2_3:45684359-45684378 | Msa0294090:CDS | 30.0% | |
| GCAAAATGCTATTAAGTCAT+GGG | + | chr2_3:45684360-45684379 | Msa0294090:CDS | 30.0% | |
| GAGTTATGCGAAATTATTAG+CGG | + | chr2_3:45684647-45684666 | Msa0294090:intron | 30.0% | |
| ! | AATTTTTATCCAAGGTGGAT+AGG | - | chr2_3:45684740-45684759 | None:intergenic | 30.0% |
| AACAATTATTCATTACCGTG+AGG | - | chr2_3:45684869-45684888 | None:intergenic | 30.0% | |
| GGTAATGAATAATTGTTGCA+TGG | + | chr2_3:45684872-45684891 | Msa0294090:intron | 30.0% | |
| ! | AATTTTCCTGTTATGATGCT+GGG | + | chr2_3:45685163-45685182 | Msa0294090:intron | 30.0% |
| ATTAATTGGATTCAAGTGGT+TGG | + | chr2_3:45685359-45685378 | Msa0294090:intron | 30.0% | |
| ATCAGACTATACTTACCAAA+CGG | + | chr2_3:45685447-45685466 | Msa0294090:intron | 30.0% | |
| AGTTATGGTAATTCGGAATT+CGG | - | chr2_3:45685473-45685492 | None:intergenic | 30.0% | |
| AGGAATGAGTTATGGTAATT+CGG | - | chr2_3:45685480-45685499 | None:intergenic | 30.0% | |
| ! | ATTCTAAGAGGAATGAGTTA+TGG | - | chr2_3:45685488-45685507 | None:intergenic | 30.0% |
| TAACTCATTCCTCTTAGAAT+CGG | + | chr2_3:45685488-45685507 | Msa0294090:intron | 30.0% | |
| TATTAAACTCCGATTCTAAG+AGG | - | chr2_3:45685500-45685519 | None:intergenic | 30.0% | |
| ! | AATATTTCTAATTGCAGGCA+GGG | + | chr2_3:45685623-45685642 | Msa0294090:intron | 30.0% |
| CTAAACTTGAAAGCAATTTC+AGG | - | chr2_3:45685834-45685853 | None:intergenic | 30.0% | |
| !! | CTGAAATTGCTTTCAAGTTT+AGG | + | chr2_3:45685832-45685851 | Msa0294090:CDS | 30.0% |
| !! | ATTCTTTGAAGGTCCTTTTA+AGG | + | chr2_3:45685863-45685882 | Msa0294090:CDS | 30.0% |
| !! | TTCTTTGAAGGTCCTTTTAA+GGG | + | chr2_3:45685864-45685883 | Msa0294090:CDS | 30.0% |
| !!! | TTAATTTGTTTTGCGTGTGT+AGG | + | chr2_3:45686121-45686140 | Msa0294090:intron | 30.0% |
| AAATAGAAAGGAAGATACCA+AGG | + | chr2_3:45686165-45686184 | Msa0294090:intron | 30.0% | |
| AATAGAAAGGAAGATACCAA+GGG | + | chr2_3:45686166-45686185 | Msa0294090:intron | 30.0% | |
| TGGAGTAAGAGAATAAAAAC+GGG | - | chr2_3:45686506-45686525 | None:intergenic | 30.0% | |
| GTGGAGTAAGAGAATAAAAA+CGG | - | chr2_3:45686507-45686526 | None:intergenic | 30.0% | |
| AAAAAGTTGTTCTCATAAGG+TGG | - | chr2_3:45686526-45686545 | None:intergenic | 30.0% | |
| GGTAAAAAGTTGTTCTCATA+AGG | - | chr2_3:45686529-45686548 | None:intergenic | 30.0% | |
| GATGTATAAAATATAGAGGG+TGG | - | chr2_3:45686550-45686569 | None:intergenic | 30.0% | |
| AAGGAATAAGATTAAGAGGG+TGG | - | chr2_3:45684247-45684266 | None:intergenic | 35.0% | |
| ATAATCTAGAGAGGAAGAGA+AGG | - | chr2_3:45684266-45684285 | None:intergenic | 35.0% | |
| !!! | CTTGAATTTTTCAGGGACAA+TGG | - | chr2_3:45684428-45684447 | None:intergenic | 35.0% |
| TATATGCGTTAGTATCGTGT+CGG | - | chr2_3:45684618-45684637 | None:intergenic | 35.0% | |
| ! | ATTTTTCCTGAATCATCGCT+TGG | - | chr2_3:45684838-45684857 | None:intergenic | 35.0% |
| ACAAGTGAAGGAATCACTTT+AGG | - | chr2_3:45684977-45684996 | None:intergenic | 35.0% | |
| ! | TGTTCTTTCTAGTAGTAGAG+CGG | + | chr2_3:45685034-45685053 | Msa0294090:intron | 35.0% |
| GAACAAACGATTGTGAAGAT+GGG | + | chr2_3:45685137-45685156 | Msa0294090:intron | 35.0% | |
| ! | GAATTTTCCTGTTATGATGC+TGG | + | chr2_3:45685162-45685181 | Msa0294090:intron | 35.0% |
| ! | CAATATTTCTAATTGCAGGC+AGG | + | chr2_3:45685622-45685641 | Msa0294090:intron | 35.0% |
| TTGTATGGCTTGAAATCTTC+AGG | - | chr2_3:45685714-45685733 | None:intergenic | 35.0% | |
| !! | GTCTCTTCATTTGACTTGTA+TGG | - | chr2_3:45685729-45685748 | None:intergenic | 35.0% |
| !! | TCTTGGAAAAGCTGATTTGA+AGG | - | chr2_3:45685772-45685791 | None:intergenic | 35.0% |
| ! | TTCAAATCAGCTTTTCCAAG+AGG | + | chr2_3:45685771-45685790 | Msa0294090:CDS | 35.0% |
| ! | TTTTCCAAGAGGATTTGCAT+GGG | + | chr2_3:45685782-45685801 | Msa0294090:CDS | 35.0% |
| AACTTGAAAGCAATTTCAGG+TGG | - | chr2_3:45685831-45685850 | None:intergenic | 35.0% | |
| !! | TTGCTTTCAAGTTTAGGCAT+TGG | + | chr2_3:45685838-45685857 | Msa0294090:CDS | 35.0% |
| !! | TGCTTTCAAGTTTAGGCATT+GGG | + | chr2_3:45685839-45685858 | Msa0294090:CDS | 35.0% |
| GAGGCTGTAATCAAATAGAA+AGG | + | chr2_3:45686153-45686172 | Msa0294090:intron | 35.0% | |
| AGTAAGAGAATAAAAACGGG+TGG | - | chr2_3:45686503-45686522 | None:intergenic | 35.0% | |
| ATGAAGCTGAGAATATCCAG+TGG | + | chr2_3:45684149-45684168 | Msa0294090:CDS | 40.0% | |
| ! | TTTTTGTAGGAATGGCCAGA+AGG | + | chr2_3:45684319-45684338 | Msa0294090:intron | 40.0% |
| TGCTATTAAGTCATGGGAGA+TGG | + | chr2_3:45684366-45684385 | Msa0294090:CDS | 40.0% | |
| ! | TAATTGACTCCTATCCACCT+TGG | + | chr2_3:45684728-45684747 | Msa0294090:intron | 40.0% |
| ! | TGTTTTCCAAGCGATGATTC+AGG | + | chr2_3:45684829-45684848 | Msa0294090:intron | 40.0% |
| TTCGGATGATACACAAGTGA+AGG | - | chr2_3:45684989-45685008 | None:intergenic | 40.0% | |
| CGAACAAACGATTGTGAAGA+TGG | + | chr2_3:45685136-45685155 | Msa0294090:intron | 40.0% | |
| TTCAAACCCAGCATCATAAC+AGG | - | chr2_3:45685172-45685191 | None:intergenic | 40.0% | |
| CCTGAACGATTTGTCTTTGA+TGG | - | chr2_3:45685393-45685412 | None:intergenic | 40.0% | |
| CCATCAAAGACAAATCGTTC+AGG | + | chr2_3:45685390-45685409 | Msa0294090:intron | 40.0% | |
| AGGAGAATGAGTTCGATTTC+TGG | + | chr2_3:45685410-45685429 | Msa0294090:intron | 40.0% | |
| GGAGAATGAGTTCGATTTCT+GGG | + | chr2_3:45685411-45685430 | Msa0294090:intron | 40.0% | |
| ! | CTTTTCCAAGAGGATTTGCA+TGG | + | chr2_3:45685781-45685800 | Msa0294090:CDS | 40.0% |
| ATTTCCCATGCAAATCCTCT+TGG | - | chr2_3:45685789-45685808 | None:intergenic | 40.0% | |
| !! | GCTTTCAAGTTTAGGCATTG+GGG | + | chr2_3:45685840-45685859 | Msa0294090:CDS | 40.0% |
| ATTGGACCATCTTTCCAGTA+GGG | - | chr2_3:45685896-45685915 | None:intergenic | 40.0% | |
| AATTGGACCATCTTTCCAGT+AGG | - | chr2_3:45685897-45685916 | None:intergenic | 40.0% | |
| ! | CACTTTGAAGGTTGAAGAAG+TGG | + | chr2_3:45686615-45686634 | Msa0294090:CDS | 40.0% |
| ! | GAATGGACATGCTGAAGTTT+TGG | - | chr2_3:45686698-45686717 | None:intergenic | 40.0% |
| GAGAATATCCAGTGGAGACA+TGG | + | chr2_3:45684157-45684176 | Msa0294090:CDS | 45.0% | |
| AATATCCAGTGGAGACATGG+AGG | + | chr2_3:45684160-45684179 | Msa0294090:CDS | 45.0% | |
| TGGTTGACAAGACCATAGGT+GGG | - | chr2_3:45684190-45684209 | None:intergenic | 45.0% | |
| ! | GTCAACCAGCTCTTTGAAGA+AGG | + | chr2_3:45684202-45684221 | Msa0294090:CDS | 45.0% |
| ! | ACCAGCTCTTTGAAGAAGGA+AGG | + | chr2_3:45684206-45684225 | Msa0294090:CDS | 45.0% |
| TCCTTCCTTCTTCAAAGAGC+TGG | - | chr2_3:45684210-45684229 | None:intergenic | 45.0% | |
| AGAGGGTGGTGATTTCACTT+TGG | - | chr2_3:45684233-45684252 | None:intergenic | 45.0% | |
| GTTTCCTCCAATGATCCTTC+TGG | - | chr2_3:45684337-45684356 | None:intergenic | 45.0% | |
| ATCAGTGTTCGTGTCGTGTT+TGG | + | chr2_3:45684679-45684698 | Msa0294090:intron | 45.0% | |
| TAATTCGGAATTCGGCCGTT+TGG | - | chr2_3:45685465-45685484 | None:intergenic | 45.0% | |
| ATTTCTAATTGCAGGCAGGG+AGG | + | chr2_3:45685626-45685645 | Msa0294090:intron | 45.0% | |
| TTTCTAATTGCAGGCAGGGA+GGG | + | chr2_3:45685627-45685646 | Msa0294090:intron | 45.0% | |
| GCAGAGGAAACTCTAAGCAT+AGG | + | chr2_3:45685657-45685676 | Msa0294090:CDS | 45.0% | |
| !! | AGGCATTGGGGATTCTTTGA+AGG | + | chr2_3:45685852-45685871 | Msa0294090:CDS | 45.0% |
| TTGGACCATCTTTCCAGTAG+GGG | - | chr2_3:45685895-45685914 | None:intergenic | 45.0% | |
| GGAAAGATGGTCCAATTCTC+TGG | + | chr2_3:45685900-45685919 | Msa0294090:CDS | 45.0% | |
| ! | ATGGTCCAATTCTCTGGCTT+GGG | + | chr2_3:45685906-45685925 | Msa0294090:CDS | 45.0% |
| TTTACTGCAAGCAAAGGCCA+TGG | + | chr2_3:45686079-45686098 | Msa0294090:intron | 45.0% | |
| TATGTGATAGGTCGGAGATG+TGG | - | chr2_3:45686385-45686404 | None:intergenic | 45.0% | |
| ! | CTTCAAAGTGTCATCCACCT+AGG | - | chr2_3:45686605-45686624 | None:intergenic | 45.0% |
| CTAGGTGGATGACACTTTGA+AGG | + | chr2_3:45686603-45686622 | Msa0294090:intron | 45.0% | |
| GTGGAGATTTACTATGACCC+AGG | + | chr2_3:45686634-45686653 | Msa0294090:CDS | 45.0% | |
| TATGACCCAGGAGAGTTGTT+TGG | + | chr2_3:45686646-45686665 | Msa0294090:CDS | 45.0% | |
| TTTGGAGGCCTTCTATCAAG+CGG | + | chr2_3:45686664-45686683 | Msa0294090:CDS | 45.0% | |
| TGCTATCTCCGCTTGATAGA+AGG | - | chr2_3:45686675-45686694 | None:intergenic | 45.0% | |
| !!! | GATAAAAATTATTTAAATTT+TGG | + | chr2_3:45684750-45684769 | Msa0294090:intron | 5.0% |
| !!! | AATTTTTGAATATTATTAAT+TGG | + | chr2_3:45685345-45685364 | Msa0294090:intron | 5.0% |
| TGACAAGACCATAGGTGGGA+GGG | - | chr2_3:45684186-45684205 | None:intergenic | 50.0% | |
| TTGACAAGACCATAGGTGGG+AGG | - | chr2_3:45684187-45684206 | None:intergenic | 50.0% | |
| CTGGTTGACAAGACCATAGG+TGG | - | chr2_3:45684191-45684210 | None:intergenic | 50.0% | |
| GAGCTGGTTGACAAGACCAT+AGG | - | chr2_3:45684194-45684213 | None:intergenic | 50.0% | |
| GGAATGGCCAGAAGGATCAT+TGG | + | chr2_3:45684327-45684346 | Msa0294090:intron | 50.0% | |
| ATGGCCAGAAGGATCATTGG+AGG | + | chr2_3:45684330-45684349 | Msa0294090:CDS | 50.0% | |
| ! | TGGTCTTGAAGTCCTGCAAG+CGG | - | chr2_3:45684408-45684427 | None:intergenic | 50.0% |
| GAACGCACACTCCTCAGATT+AGG | + | chr2_3:45684557-45684576 | Msa0294090:intron | 50.0% | |
| GATTAGGCGTGTCCTGGTAT+AGG | + | chr2_3:45684573-45684592 | Msa0294090:intron | 50.0% | |
| AGAGCGGCTGCAAAGAACAT+TGG | + | chr2_3:45685050-45685069 | Msa0294090:intron | 50.0% | |
| ! | GTAGGGGCATGTCCCTTAAA+AGG | - | chr2_3:45685879-45685898 | None:intergenic | 50.0% |
| TTTAAGGGACATGCCCCTAC+TGG | + | chr2_3:45685879-45685898 | Msa0294090:CDS | 50.0% | |
| ACATGCCCCTACTGGAAAGA+TGG | + | chr2_3:45685887-45685906 | Msa0294090:CDS | 50.0% | |
| GATGGTCCAATTCTCTGGCT+TGG | + | chr2_3:45685905-45685924 | Msa0294090:CDS | 50.0% | |
| GAGTTCCCAAGCCAGAGAAT+TGG | - | chr2_3:45685914-45685933 | None:intergenic | 50.0% | |
| AGAAAATACCCATGGGGCCA+TGG | - | chr2_3:45686099-45686118 | None:intergenic | 50.0% | |
| ! | CGTGTGTAGGTTGACTTACG+AGG | + | chr2_3:45686134-45686153 | Msa0294090:intron | 50.0% |
| TGATAGGTCGGAGATGTGGT+AGG | - | chr2_3:45686381-45686400 | None:intergenic | 50.0% | |
| TCCTCAGATTAGGCGTGTCC+TGG | + | chr2_3:45684567-45684586 | Msa0294090:intron | 55.0% | |
| ACCAGGACACGCCTAATCTG+AGG | - | chr2_3:45684571-45684590 | None:intergenic | 55.0% | |
| CACGACACGTGTCCTATACC+AGG | - | chr2_3:45684588-45684607 | None:intergenic | 55.0% | |
| CAGGGAGGGATTAACTGCAG+AGG | + | chr2_3:45685641-45685660 | Msa0294090:CDS | 55.0% | |
| !! | CTCTGGCTTGGGAACTCTCA+AGG | + | chr2_3:45685917-45685936 | Msa0294090:CDS | 55.0% |
| GACCCAGGAGAGTTGTTTGG+AGG | + | chr2_3:45686649-45686668 | Msa0294090:CDS | 55.0% | |
| GGCCTCCAAACAACTCTCCT+GGG | - | chr2_3:45686654-45686673 | None:intergenic | 55.0% | |
| AGGCCTCCAAACAACTCTCC+TGG | - | chr2_3:45686655-45686674 | None:intergenic | 55.0% | |
| GACGCACAAGATCCGCTTGC+AGG | + | chr2_3:45684393-45684412 | Msa0294090:CDS | 60.0% | |
| AAGCAAAGGCCATGGCCCCA+TGG | + | chr2_3:45686087-45686106 | Msa0294090:intron | 60.0% | |
| AGCAAAGGCCATGGCCCCAT+GGG | + | chr2_3:45686088-45686107 | Msa0294090:intron | 60.0% | |
| GAGGGCCTCCATGTCTCCAC+TGG | - | chr2_3:45684168-45684187 | None:intergenic | 65.0% | |
| CATGGAGGCCCTCCCACCTA+TGG | + | chr2_3:45684175-45684194 | Msa0294090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 45684103 | 45686726 | 45684103 | ID=Msa0294090;Name=Msa0294090 |
| chr2_3 | mRNA | 45684103 | 45686726 | 45684103 | ID=Msa0294090-mRNA-1;Parent=Msa0294090;Name=Msa0294090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.33|0|1|1|1|4|0|227 |
| chr2_3 | exon | 45684103 | 45684234 | 45684103 | ID=Msa0294090-mRNA-1:exon:14228;Parent=Msa0294090-mRNA-1 |
| chr2_3 | exon | 45684328 | 45684460 | 45684328 | ID=Msa0294090-mRNA-1:exon:14229;Parent=Msa0294090-mRNA-1 |
| chr2_3 | exon | 45685640 | 45685938 | 45685640 | ID=Msa0294090-mRNA-1:exon:14230;Parent=Msa0294090-mRNA-1 |
| chr2_3 | exon | 45686607 | 45686726 | 45686607 | ID=Msa0294090-mRNA-1:exon:14231;Parent=Msa0294090-mRNA-1 |
| chr2_3 | CDS | 45684103 | 45684234 | 45684103 | ID=Msa0294090-mRNA-1:cds;Parent=Msa0294090-mRNA-1 |
| chr2_3 | CDS | 45684328 | 45684460 | 45684328 | ID=Msa0294090-mRNA-1:cds;Parent=Msa0294090-mRNA-1 |
| chr2_3 | CDS | 45685640 | 45685938 | 45685640 | ID=Msa0294090-mRNA-1:cds;Parent=Msa0294090-mRNA-1 |
| chr2_3 | CDS | 45686607 | 45686726 | 45686607 | ID=Msa0294090-mRNA-1:cds;Parent=Msa0294090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
