Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255010 | XP_003596337.1 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.53e-163 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255010 | sp|P16273|PRPX_HORVU | 48.416 | 221 | 110 | 3 | 8 | 224 | 9 | 229 | 3.02e-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255010 | Q2HSC5 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 7.31e-164 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048950 | Msa0255010 | 0.827583 | 1.443727e-54 | -8.615850e-47 |
| Msa0059880 | Msa0255010 | 0.843174 | 1.648383e-58 | -8.615850e-47 |
| Msa0072030 | Msa0255010 | 0.808073 | 3.704707e-50 | -8.615850e-47 |
| Msa0073970 | Msa0255010 | 0.832398 | 9.671519e-56 | -8.615850e-47 |
| Msa0084160 | Msa0255010 | 0.810475 | 1.131683e-50 | -8.615850e-47 |
| Msa0093530 | Msa0255010 | 0.824929 | 6.183331e-54 | -8.615850e-47 |
| Msa0121970 | Msa0255010 | 0.840047 | 1.099777e-57 | -8.615850e-47 |
| Msa0126960 | Msa0255010 | 0.822745 | 2.010087e-53 | -8.615850e-47 |
| Msa0150910 | Msa0255010 | 0.817558 | 3.098925e-52 | -8.615850e-47 |
| Msa0166620 | Msa0255010 | 0.833490 | 5.174999e-56 | -8.615850e-47 |
| Msa0196420 | Msa0255010 | 0.804015 | 2.645453e-49 | -8.615850e-47 |
| Msa0199860 | Msa0255010 | 0.822268 | 2.594473e-53 | -8.615850e-47 |
| Msa0200090 | Msa0255010 | 0.821565 | 3.774070e-53 | -8.615850e-47 |
| Msa0207930 | Msa0255010 | 0.816107 | 6.556948e-52 | -8.615850e-47 |
| Msa0207970 | Msa0255010 | 0.846792 | 1.738956e-59 | -8.615850e-47 |
| Msa0214630 | Msa0255010 | 0.972855 | 1.879434e-135 | -8.615850e-47 |
| Msa0238330 | Msa0255010 | 0.813003 | 3.188868e-51 | -8.615850e-47 |
| Msa0243990 | Msa0255010 | 0.808619 | 2.833950e-50 | -8.615850e-47 |
| Msa0255010 | Msa0291880 | 0.801944 | 7.089235e-49 | -8.615850e-47 |
| Msa0255010 | Msa0294090 | 0.886859 | 2.368810e-72 | -8.615850e-47 |
| Msa0255010 | Msa0298270 | 0.803163 | 3.975005e-49 | -8.615850e-47 |
| Msa0255010 | Msa0320140 | 0.807543 | 4.801207e-50 | -8.615850e-47 |
| Msa0255010 | Msa0332720 | 0.935567 | 6.925380e-97 | -8.615850e-47 |
| Msa0255010 | Msa0485290 | 0.801716 | 7.897810e-49 | -8.615850e-47 |
| Msa0255010 | Msa0548970 | 0.800528 | 1.381578e-48 | -8.615850e-47 |
| Msa0255010 | Msa0599600 | 0.804137 | 2.495041e-49 | -8.615850e-47 |
| Msa0255010 | Msa0605470 | 0.804356 | 2.247332e-49 | -8.615850e-47 |
| Msa0255010 | Msa0629030 | 0.835142 | 1.993117e-56 | -8.615850e-47 |
| Msa0255010 | Msa0651820 | 0.800171 | 1.633377e-48 | -8.615850e-47 |
| Msa0255010 | Msa0666580 | 0.832234 | 1.061899e-55 | -8.615850e-47 |
| Msa0255010 | Msa0670360 | 0.801512 | 8.694103e-49 | -8.615850e-47 |
| Msa0255010 | Msa0678620 | 0.814088 | 1.841154e-51 | -8.615850e-47 |
| Msa0255010 | Msa0727480 | 0.809241 | 2.085027e-50 | -8.615850e-47 |
| Msa0255010 | Msa0728520 | 0.812655 | 3.801484e-51 | -8.615850e-47 |
| Msa0255010 | Msa0735280 | 0.827348 | 1.643805e-54 | -8.615850e-47 |
| Msa0255010 | Msa0747500 | 0.801988 | 6.944609e-49 | -8.615850e-47 |
| Msa0255010 | Msa0776540 | 0.808403 | 3.151291e-50 | -8.615850e-47 |
| Msa0255010 | Msa0777250 | 0.801137 | 1.037638e-48 | -8.615850e-47 |
| Msa0255010 | Msa0814230 | 0.802668 | 5.029443e-49 | -8.615850e-47 |
| Msa0255010 | Msa0883610 | 0.804713 | 1.892970e-49 | -8.615850e-47 |
| Msa0255010 | Msa0883640 | 0.811483 | 6.844014e-51 | -8.615850e-47 |
| Msa0255010 | Msa0910590 | 0.813682 | 2.262315e-51 | -8.615850e-47 |
| Msa0255010 | Msa0910830 | 0.818569 | 1.830410e-52 | -8.615850e-47 |
| Msa0255010 | Msa0948430 | 0.809736 | 1.633024e-50 | -8.615850e-47 |
| Msa0255010 | Msa0951150 | 0.804279 | 2.331445e-49 | -8.615850e-47 |
| Msa0255010 | Msa0960090 | 0.813244 | 2.822860e-51 | -8.615850e-47 |
| Msa0255010 | Msa0985250 | 0.806705 | 7.225346e-50 | -8.615850e-47 |
| Msa0255010 | Msa0985700 | 0.811731 | 6.046672e-51 | -8.615850e-47 |
| Msa0255010 | Msa0987640 | 0.800868 | 1.177409e-48 | -8.615850e-47 |
| Msa0255010 | Msa0996940 | 0.802319 | 5.935363e-49 | -8.615850e-47 |
| Msa0255010 | Msa1021620 | 0.804906 | 1.725181e-49 | -8.615850e-47 |
| Msa0255010 | Msa1083100 | 0.817458 | 3.262964e-52 | -8.615850e-47 |
| Msa0255010 | Msa1109890 | 0.818681 | 1.726642e-52 | -8.615850e-47 |
| Msa0255010 | Msa1151070 | 0.803488 | 3.403318e-49 | -8.615850e-47 |
| Msa0255010 | Msa1165860 | 0.801428 | 9.045093e-49 | -8.615850e-47 |
| Msa0255010 | Msa1269050 | 0.817010 | 4.115423e-52 | -8.615850e-47 |
| Msa0255010 | Msa1323030 | 0.825601 | 4.287932e-54 | -8.615850e-47 |
| Msa0255010 | Msa1323160 | 0.818603 | 1.798476e-52 | -8.615850e-47 |
| Msa0255010 | Msa1349420 | 0.815596 | 8.527504e-52 | -8.615850e-47 |
| Msa0255010 | Msa1378400 | 0.803705 | 3.068306e-49 | -8.615850e-47 |
| Msa0255010 | Msa1412360 | 0.800441 | 1.439081e-48 | -8.615850e-47 |
| Msa0255010 | Msa1445900 | 0.816726 | 4.766672e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255010 | MtrunA17_Chr2g0315601 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.41e-167 | 461 |
| Msa0255010 | MtrunA17_Chr2g0315561 | 90.749 | 227 | 21 | 0 | 1 | 227 | 1 | 227 | 5.04e-157 | 434 |
| Msa0255010 | MtrunA17_Chr8g0359751 | 75.330 | 227 | 51 | 2 | 5 | 226 | 10 | 236 | 4.73e-126 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0255010 | AT1G78780.3 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.46e-121 | 344 |
| Msa0255010 | AT1G78780.5 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.46e-121 | 344 |
| Msa0255010 | AT1G78780.2 | 69.874 | 239 | 59 | 3 | 1 | 227 | 1 | 238 | 1.52e-120 | 342 |
| Msa0255010 | AT1G78780.4 | 68.619 | 239 | 59 | 4 | 1 | 227 | 1 | 235 | 3.64e-116 | 331 |
| Msa0255010 | AT1G78780.1 | 70.455 | 176 | 40 | 2 | 64 | 227 | 1 | 176 | 1.98e-87 | 256 |
Find 61 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAAGTTCTTTGTTAA+TGG | 0.183252 | 2_2:+48619266 | Msa0255010:CDS |
| GTAAACAACTTATGATTAAT+TGG | 0.225426 | 2_2:-48621630 | None:intergenic |
| CTGAAATTGCTTTCAAGTTT+AGG | 0.246221 | 2_2:+48620749 | Msa0255010:CDS |
| CTAAACTTGAAAGCAATTTC+AGG | 0.282078 | 2_2:-48620748 | None:intergenic |
| TGCTTTCAAGTTTAGGCATT+GGG | 0.293525 | 2_2:+48620756 | Msa0255010:CDS |
| GTCTCTTCATTTGACTTGTA+TGG | 0.318507 | 2_2:-48620643 | None:intergenic |
| GTTTCCTCCAATGATCCTTC+TGG | 0.340734 | 2_2:-48619161 | None:intergenic |
| GTAGGGGCATGTCCCTTAAA+AGG | 0.343475 | 2_2:-48620793 | None:intergenic |
| TTGTATGGCTTGAAATCTTC+AGG | 0.351240 | 2_2:-48620628 | None:intergenic |
| TCCTTCCTTCTTCAAAGAGC+TGG | 0.367470 | 2_2:-48619030 | None:intergenic |
| TATGACCCAGGAGAGTTGTT+TGG | 0.376206 | 2_2:+48621557 | Msa0255010:CDS |
| GAATGGACATGCTGAAGTTT+TGG | 0.380812 | 2_2:-48621606 | None:intergenic |
| GACACACAAGATCCGCTTGC+AGG | 0.389775 | 2_2:+48619220 | Msa0255010:CDS |
| TGCTATCTCCGCTTGATAGA+AGG | 0.400178 | 2_2:-48621583 | None:intergenic |
| AGGCATTGGGGATTCTTTGA+AGG | 0.405743 | 2_2:+48620769 | Msa0255010:CDS |
| TCTTGGAAAAGCTGATTTGA+AGG | 0.414467 | 2_2:-48620686 | None:intergenic |
| GATGGTCCAATTCTCTGGCT+TGG | 0.418419 | 2_2:+48620822 | Msa0255010:CDS |
| ATGGTCCAATTCTCTGGCTT+GGG | 0.433013 | 2_2:+48620823 | Msa0255010:CDS |
| ATTTCCCATGCAAATCCTCT+TGG | 0.434442 | 2_2:-48620703 | None:intergenic |
| GAGTTCCCAAGCCAGAGAAT+TGG | 0.445368 | 2_2:-48620828 | None:intergenic |
| GGAAAGATGGTCCAATTCTC+TGG | 0.445571 | 2_2:+48620817 | Msa0255010:CDS |
| GTCAACCAGCTCTTTGAAGA+AGG | 0.445909 | 2_2:+48619025 | Msa0255010:CDS |
| TTTAAGGGACATGCCCCTAC+TGG | 0.446687 | 2_2:+48620796 | Msa0255010:CDS |
| CTAGGTGGATGACACTTTGA+AGG | 0.455213 | 2_2:+48621514 | Msa0255010:intron |
| AGGCCTCCAAACAACTCTCC+TGG | 0.465379 | 2_2:-48621563 | None:intergenic |
| ACTTATGATTAATTGGAGAA+TGG | 0.470422 | 2_2:-48621623 | None:intergenic |
| TGCAAAATGCTATTAAGTCA+TGG | 0.470507 | 2_2:+48619186 | Msa0255010:CDS |
| CACTTTGAAGGTTGAAGAAG+TGG | 0.475985 | 2_2:+48621526 | Msa0255010:CDS |
| CATGGTGGCCCTCCCACCTA+TGG | 0.478252 | 2_2:+48618998 | Msa0255010:CDS |
| GGAATGGCCAGAAGGATCAT+TGG | 0.485397 | 2_2:+48619154 | Msa0255010:intron |
| TTGCTTTCAAGTTTAGGCAT+TGG | 0.497447 | 2_2:+48620755 | Msa0255010:CDS |
| TGCTATTAAGTCATGGGAGA+TGG | 0.500588 | 2_2:+48619193 | Msa0255010:CDS |
| GACCCAGGAGAGTTGTTTGG+AGG | 0.521378 | 2_2:+48621560 | Msa0255010:CDS |
| TTTCTAATTGCAGGCAGGGA+GGG | 0.527343 | 2_2:+48620544 | Msa0255010:intron |
| GGCCTCCAAACAACTCTCCT+GGG | 0.528244 | 2_2:-48621562 | None:intergenic |
| GCAAAATGCTATTAAGTCAT+GGG | 0.533576 | 2_2:+48619187 | Msa0255010:CDS |
| ACATGCCCCTACTGGAAAGA+TGG | 0.534599 | 2_2:+48620804 | Msa0255010:CDS |
| GAGAATATCCAGTGGAGACA+TGG | 0.538003 | 2_2:+48618980 | Msa0255010:CDS |
| CTCTGGCTTGGGAACTCTCA+AGG | 0.542832 | 2_2:+48620834 | Msa0255010:CDS |
| CTGGTTGACAAGACCATAGG+TGG | 0.543209 | 2_2:-48619011 | None:intergenic |
| GAGGGCCACCATGTCTCCAC+TGG | 0.548695 | 2_2:-48618988 | None:intergenic |
| ATTGGACCATCTTTCCAGTA+GGG | 0.558086 | 2_2:-48620810 | None:intergenic |
| AATTGGACCATCTTTCCAGT+AGG | 0.570938 | 2_2:-48620811 | None:intergenic |
| ACCAGCTCTTTGAAGAAGGA+AGG | 0.578694 | 2_2:+48619029 | Msa0255010:CDS |
| GTGGAGATTTACTATGACCC+AGG | 0.582286 | 2_2:+48621545 | Msa0255010:CDS |
| GCAGAGGAAACTCTAAGCAT+AGG | 0.582569 | 2_2:+48620574 | Msa0255010:CDS |
| GCTTTCAAGTTTAGGCATTG+GGG | 0.594203 | 2_2:+48620757 | Msa0255010:CDS |
| TGACAAGACCATAGGTGGGA+GGG | 0.603232 | 2_2:-48619006 | None:intergenic |
| TTTGGAGGCCTTCTATCAAG+CGG | 0.613986 | 2_2:+48621575 | Msa0255010:CDS |
| TTGGACCATCTTTCCAGTAG+GGG | 0.615171 | 2_2:-48620809 | None:intergenic |
| ATGGCCAGAAGGATCATTGG+AGG | 0.617256 | 2_2:+48619157 | Msa0255010:CDS |
| GAGCTGGTTGACAAGACCAT+AGG | 0.618838 | 2_2:-48619014 | None:intergenic |
| AACTTGAAAGCAATTTCAGG+TGG | 0.634134 | 2_2:-48620745 | None:intergenic |
| GAAATCATTAAAGTTTACAC+AGG | 0.640637 | 2_2:+48620721 | Msa0255010:CDS |
| TGGTCTTGAAGTCCTGCAAG+CGG | 0.649941 | 2_2:-48619232 | None:intergenic |
| ATTTCTAATTGCAGGCAGGG+AGG | 0.661707 | 2_2:+48620543 | Msa0255010:intron |
| AATATCCAGTGGAGACATGG+TGG | 0.668708 | 2_2:+48618983 | Msa0255010:CDS |
| CAGGGAGGGATTAACTGCAG+AGG | 0.669645 | 2_2:+48620558 | Msa0255010:CDS |
| TTGACAAGACCATAGGTGGG+AGG | 0.674543 | 2_2:-48619007 | None:intergenic |
| ATGAAGCTGAGAATATCCAG+TGG | 0.685948 | 2_2:+48618972 | Msa0255010:CDS |
| TGGTTGACAAGACCATAGGT+GGG | 0.689395 | 2_2:-48619010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTTAAATATAATAA+AGG | + | chr2_2:48621115-48621134 | Msa0255010:intron | 0.0% |
| !!! | GATAAAAATTATTTCAATTT+TGG | + | chr2_2:48619561-48619580 | Msa0255010:intron | 10.0% |
| !! | AATTTAAATATAATAAAGGA+AGG | + | chr2_2:48621119-48621138 | Msa0255010:intron | 10.0% |
| !! | TAAAATAAATGATAATCTAA+TGG | - | chr2_2:48621397-48621416 | None:intergenic | 10.0% |
| !!! | TTTTCTTAACAAATTTTTGT+AGG | + | chr2_2:48619133-48619152 | Msa0255010:intron | 15.0% |
| !! | TATGAATTATAATTCTATGA+AGG | + | chr2_2:48619361-48619380 | Msa0255010:intron | 15.0% |
| !! | GAATTATACAAAATTATTAG+TGG | + | chr2_2:48619452-48619471 | Msa0255010:intron | 15.0% |
| !!! | ATTGAAATAATTTTTATCCA+AGG | - | chr2_2:48619559-48619578 | None:intergenic | 15.0% |
| !! | TTAAAATGAGAAATTTAACA+TGG | - | chr2_2:48620974-48620993 | None:intergenic | 15.0% |
| !!! | TTCAAATTTCAATGTTTTTT+TGG | - | chr2_2:48621194-48621213 | None:intergenic | 15.0% |
| !!! | AACAATAATTTTTTTAACCT+AGG | + | chr2_2:48621496-48621515 | Msa0255010:intron | 15.0% |
| !! | AAAATTGAGAAAGAATTACA+TGG | - | chr2_2:48619117-48619136 | None:intergenic | 20.0% |
| !!! | TTAACAAATTTTTGTAGGAA+TGG | + | chr2_2:48619138-48619157 | Msa0255010:intron | 20.0% |
| !!! | AAATTCAAGTTCTTTGTTAA+TGG | + | chr2_2:48619266-48619285 | Msa0255010:CDS | 20.0% |
| !!! | GTAAATGATTCAAATTTGTT+TGG | + | chr2_2:48619295-48619314 | Msa0255010:intron | 20.0% |
| !! | AATTATAATTCTATGAAGGA+CGG | + | chr2_2:48619365-48619384 | Msa0255010:intron | 20.0% |
| !! | TAATATATGAAACATGGATA+CGG | - | chr2_2:48619519-48619538 | None:intergenic | 20.0% |
| !!! | TTTATCTTTTTAATGGGTTT+AGG | + | chr2_2:48619612-48619631 | Msa0255010:intron | 20.0% |
| !! | AGATTAATGAATATACCAAT+AGG | - | chr2_2:48619696-48619715 | None:intergenic | 20.0% |
| !!! | AACAGCTATATTTTTTACTT+CGG | - | chr2_2:48619841-48619860 | None:intergenic | 20.0% |
| !!! | AAGTTAGCAATGATTTTTTT+AGG | + | chr2_2:48620195-48620214 | Msa0255010:intron | 20.0% |
| !!! | AGTTAGCAATGATTTTTTTA+GGG | + | chr2_2:48620196-48620215 | Msa0255010:intron | 20.0% |
| !! | TATTATTAATTGGATTCAAG+TGG | + | chr2_2:48620272-48620291 | Msa0255010:intron | 20.0% |
| !!! | TATCAAAATTTGAGATCAAT+TGG | + | chr2_2:48620444-48620463 | Msa0255010:intron | 20.0% |
| !! | TAACTATAGAAATTAGATAC+AGG | - | chr2_2:48620474-48620493 | None:intergenic | 20.0% |
| !!! | AATTCAATATTTCTAATTGC+AGG | + | chr2_2:48620535-48620554 | Msa0255010:intron | 20.0% |
| !! | ATGATCTGAATTTAATTGTT+TGG | + | chr2_2:48620881-48620900 | Msa0255010:intron | 20.0% |
| !!! | TGAGAAATTTAAAATGATCA+AGG | - | chr2_2:48620929-48620948 | None:intergenic | 20.0% |
| !! | ATTAATAAGAAAATACCCAT+GGG | - | chr2_2:48621023-48621042 | None:intergenic | 20.0% |
| !! | AATTAATAAGAAAATACCCA+TGG | - | chr2_2:48621024-48621043 | None:intergenic | 20.0% |
| !!! | TAAATTTTAATGTTATCCCT+TGG | - | chr2_2:48621105-48621124 | None:intergenic | 20.0% |
| !! | AGTGATGTATAAAATATAGA+GGG | - | chr2_2:48621472-48621491 | None:intergenic | 20.0% |
| !! | TAGTGATGTATAAAATATAG+AGG | - | chr2_2:48621473-48621492 | None:intergenic | 20.0% |
| !!! | AATAATTTTTTTAACCTAGG+TGG | + | chr2_2:48621499-48621518 | Msa0255010:intron | 20.0% |
| ! | AATGGAGAATAAGATTAAGA+GGG | - | chr2_2:48619075-48619094 | None:intergenic | 25.0% |
| ! | AAATGGAGAATAAGATTAAG+AGG | - | chr2_2:48619076-48619095 | None:intergenic | 25.0% |
| !! | CAAAGAACTTGAATTTTTCA+GGG | - | chr2_2:48619262-48619281 | None:intergenic | 25.0% |
| !! | ACAAAGAACTTGAATTTTTC+AGG | - | chr2_2:48619263-48619282 | None:intergenic | 25.0% |
| ! | CGATCATAATATATGAAACA+TGG | - | chr2_2:48619525-48619544 | None:intergenic | 25.0% |
| !! | GAAATAATTTTTATCCAAGG+TGG | - | chr2_2:48619556-48619575 | None:intergenic | 25.0% |
| !! | TTTGATTCGTCAAAAAACAA+AGG | + | chr2_2:48620125-48620144 | Msa0255010:intron | 25.0% |
| !!! | GTTAGCAATGATTTTTTTAG+GGG | + | chr2_2:48620197-48620216 | Msa0255010:intron | 25.0% |
| ! | TATTAAACTTCGATTCTAAG+AGG | - | chr2_2:48620417-48620436 | None:intergenic | 25.0% |
| ! | GAAATCATTAAAGTTTACAC+AGG | + | chr2_2:48620721-48620740 | Msa0255010:CDS | 25.0% |
| !! | TTAATTTTTACTGCAAGCAA+AGG | + | chr2_2:48620990-48621009 | Msa0255010:intron | 25.0% |
| ! | TTAATAAGAAAATACCCATG+GGG | - | chr2_2:48621022-48621041 | None:intergenic | 25.0% |
| !!! | TTATTAATTTGTTTTGCGTG+TGG | + | chr2_2:48621035-48621054 | Msa0255010:intron | 25.0% |
| ! | ATATGATATATGTGATAGGT+CGG | - | chr2_2:48621313-48621332 | None:intergenic | 25.0% |
| ! | AGTGATATGATATATGTGAT+AGG | - | chr2_2:48621317-48621336 | None:intergenic | 25.0% |
| ATAATCTAGAGAGGAAGAAA+TGG | - | chr2_2:48619093-48619112 | None:intergenic | 30.0% | |
| TTACATGGTATAATCTAGAG+AGG | - | chr2_2:48619102-48619121 | None:intergenic | 30.0% | |
| TGCAAAATGCTATTAAGTCA+TGG | + | chr2_2:48619186-48619205 | Msa0255010:CDS | 30.0% | |
| GCAAAATGCTATTAAGTCAT+GGG | + | chr2_2:48619187-48619206 | Msa0255010:CDS | 30.0% | |
| ! | AATTTTTATCCAAGGTGGAT+AGG | - | chr2_2:48619551-48619570 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTAAATCATCGCT+TGG | - | chr2_2:48619649-48619668 | None:intergenic | 30.0% |
| AGTAGAATACGTAGAAAACT+TGG | + | chr2_2:48619749-48619768 | Msa0255010:intron | 30.0% | |
| AAACAAAACACCAATGTTCT+TGG | - | chr2_2:48619897-48619916 | None:intergenic | 30.0% | |
| ATTAATTGGATTCAAGTGGT+TGG | + | chr2_2:48620276-48620295 | Msa0255010:intron | 30.0% | |
| ATCAGACTATACTTACCAAA+CGG | + | chr2_2:48620364-48620383 | Msa0255010:intron | 30.0% | |
| AGTTATGGTAATTCGGAATT+CGG | - | chr2_2:48620390-48620409 | None:intergenic | 30.0% | |
| AGGAATGAGTTATGGTAATT+CGG | - | chr2_2:48620397-48620416 | None:intergenic | 30.0% | |
| ! | ATTCTAAGAGGAATGAGTTA+TGG | - | chr2_2:48620405-48620424 | None:intergenic | 30.0% |
| ! | AATATTTCTAATTGCAGGCA+GGG | + | chr2_2:48620540-48620559 | Msa0255010:intron | 30.0% |
| CTAAACTTGAAAGCAATTTC+AGG | - | chr2_2:48620751-48620770 | None:intergenic | 30.0% | |
| !! | CTGAAATTGCTTTCAAGTTT+AGG | + | chr2_2:48620749-48620768 | Msa0255010:CDS | 30.0% |
| !! | ATTCTTTGAAGGTCCTTTTA+AGG | + | chr2_2:48620780-48620799 | Msa0255010:CDS | 30.0% |
| !! | TTCTTTGAAGGTCCTTTTAA+GGG | + | chr2_2:48620781-48620800 | Msa0255010:CDS | 30.0% |
| AAATAGAAAGGAAGATACCA+AGG | + | chr2_2:48621085-48621104 | Msa0255010:intron | 30.0% | |
| AATAGAAAGGAAGATACCAA+GGG | + | chr2_2:48621086-48621105 | Msa0255010:intron | 30.0% | |
| AAAAAGTTGTTCTCATAAGG+TGG | - | chr2_2:48621445-48621464 | None:intergenic | 30.0% | |
| GGTAAAAAGTTGTTCTCATA+AGG | - | chr2_2:48621448-48621467 | None:intergenic | 30.0% | |
| GATGTATAAAATATAGAGGG+TGG | - | chr2_2:48621469-48621488 | None:intergenic | 30.0% | |
| !!! | CTTGAATTTTTCAGGGACAA+TGG | - | chr2_2:48619255-48619274 | None:intergenic | 35.0% |
| ATGAAACATGGATACGGATA+CGG | - | chr2_2:48619513-48619532 | None:intergenic | 35.0% | |
| ! | TGTTTTCCAAGCGATGATTT+AGG | + | chr2_2:48619640-48619659 | Msa0255010:intron | 35.0% |
| ACAAGTGAAGGAATCACTTT+AGG | - | chr2_2:48619811-48619830 | None:intergenic | 35.0% | |
| ! | TGTTCTTTCTAGTAGTAGAG+CGG | + | chr2_2:48619868-48619887 | Msa0255010:intron | 35.0% |
| GAACAAACGATTGTGAAGAT+GGG | + | chr2_2:48620054-48620073 | Msa0255010:intron | 35.0% | |
| ! | AATTTTCCCGTTATGATGCT+GGG | + | chr2_2:48620080-48620099 | Msa0255010:intron | 35.0% |
| ATTCAAACCCAGCATCATAA+CGG | - | chr2_2:48620090-48620109 | None:intergenic | 35.0% | |
| ! | CAATATTTCTAATTGCAGGC+AGG | + | chr2_2:48620539-48620558 | Msa0255010:intron | 35.0% |
| TTGTATGGCTTGAAATCTTC+AGG | - | chr2_2:48620631-48620650 | None:intergenic | 35.0% | |
| !! | GTCTCTTCATTTGACTTGTA+TGG | - | chr2_2:48620646-48620665 | None:intergenic | 35.0% |
| !! | TCTTGGAAAAGCTGATTTGA+AGG | - | chr2_2:48620689-48620708 | None:intergenic | 35.0% |
| ! | TTCAAATCAGCTTTTCCAAG+AGG | + | chr2_2:48620688-48620707 | Msa0255010:CDS | 35.0% |
| ! | TTTTCCAAGAGGATTTGCAT+GGG | + | chr2_2:48620699-48620718 | Msa0255010:CDS | 35.0% |
| AACTTGAAAGCAATTTCAGG+TGG | - | chr2_2:48620748-48620767 | None:intergenic | 35.0% | |
| !! | TTGCTTTCAAGTTTAGGCAT+TGG | + | chr2_2:48620755-48620774 | Msa0255010:CDS | 35.0% |
| !! | TGCTTTCAAGTTTAGGCATT+GGG | + | chr2_2:48620756-48620775 | Msa0255010:CDS | 35.0% |
| !!! | TTAATTTGTTTTGCGTGTGG+AGG | + | chr2_2:48621038-48621057 | Msa0255010:intron | 35.0% |
| GAGGCTGTAATCAAATAGAA+AGG | + | chr2_2:48621073-48621092 | Msa0255010:intron | 35.0% | |
| TGGAGCAAGAGAATAAAAAC+GGG | - | chr2_2:48621425-48621444 | None:intergenic | 35.0% | |
| GTGGAGCAAGAGAATAAAAA+CGG | - | chr2_2:48621426-48621445 | None:intergenic | 35.0% | |
| ATGAAGCTGAGAATATCCAG+TGG | + | chr2_2:48618972-48618991 | Msa0255010:CDS | 40.0% | |
| AGGGTGTGATGATTTCACTT+TGG | - | chr2_2:48619056-48619075 | None:intergenic | 40.0% | |
| ! | TTTTTGTAGGAATGGCCAGA+AGG | + | chr2_2:48619146-48619165 | Msa0255010:intron | 40.0% |
| TGCTATTAAGTCATGGGAGA+TGG | + | chr2_2:48619193-48619212 | Msa0255010:CDS | 40.0% | |
| TATGAAGGACGGACAATCAT+CGG | + | chr2_2:48619376-48619395 | Msa0255010:intron | 40.0% | |
| ! | AATTCAGTTCGTGTCGTTGT+CGG | - | chr2_2:48619437-48619456 | None:intergenic | 40.0% |
| GCTTACATCAACGATCCTAT+TGG | + | chr2_2:48619678-48619697 | Msa0255010:intron | 40.0% | |
| TTCGGATGATACACAAGTGA+AGG | - | chr2_2:48619823-48619842 | None:intergenic | 40.0% | |
| CGCATGTAAGAGACTTTGTA+TGG | + | chr2_2:48620017-48620036 | Msa0255010:intron | 40.0% | |
| CGAACAAACGATTGTGAAGA+TGG | + | chr2_2:48620053-48620072 | Msa0255010:intron | 40.0% | |
| ! | GAATTTTCCCGTTATGATGC+TGG | + | chr2_2:48620079-48620098 | Msa0255010:intron | 40.0% |
| TTCAAACCCAGCATCATAAC+GGG | - | chr2_2:48620089-48620108 | None:intergenic | 40.0% | |
| CCTGAACGATTTGTCTTTGA+TGG | - | chr2_2:48620310-48620329 | None:intergenic | 40.0% | |
| CCATCAAAGACAAATCGTTC+AGG | + | chr2_2:48620307-48620326 | Msa0255010:intron | 40.0% | |
| GGAGAATGAGTTCGATTTCT+AGG | + | chr2_2:48620328-48620347 | Msa0255010:intron | 40.0% | |
| ! | CTTTTCCAAGAGGATTTGCA+TGG | + | chr2_2:48620698-48620717 | Msa0255010:CDS | 40.0% |
| ATTTCCCATGCAAATCCTCT+TGG | - | chr2_2:48620706-48620725 | None:intergenic | 40.0% | |
| !! | GCTTTCAAGTTTAGGCATTG+GGG | + | chr2_2:48620757-48620776 | Msa0255010:CDS | 40.0% |
| ATTGGACCATCTTTCCAGTA+GGG | - | chr2_2:48620813-48620832 | None:intergenic | 40.0% | |
| AATTGGACCATCTTTCCAGT+AGG | - | chr2_2:48620814-48620833 | None:intergenic | 40.0% | |
| AGCAAGAGAATAAAAACGGG+TGG | - | chr2_2:48621422-48621441 | None:intergenic | 40.0% | |
| ! | CACTTTGAAGGTTGAAGAAG+TGG | + | chr2_2:48621526-48621545 | Msa0255010:CDS | 40.0% |
| ! | GAATGGACATGCTGAAGTTT+TGG | - | chr2_2:48621609-48621628 | None:intergenic | 40.0% |
| GAGAATATCCAGTGGAGACA+TGG | + | chr2_2:48618980-48618999 | Msa0255010:CDS | 45.0% | |
| AATATCCAGTGGAGACATGG+TGG | + | chr2_2:48618983-48619002 | Msa0255010:CDS | 45.0% | |
| TGGTTGACAAGACCATAGGT+GGG | - | chr2_2:48619013-48619032 | None:intergenic | 45.0% | |
| ! | GTCAACCAGCTCTTTGAAGA+AGG | + | chr2_2:48619025-48619044 | Msa0255010:CDS | 45.0% |
| ! | ACCAGCTCTTTGAAGAAGGA+AGG | + | chr2_2:48619029-48619048 | Msa0255010:CDS | 45.0% |
| TCCTTCCTTCTTCAAAGAGC+TGG | - | chr2_2:48619033-48619052 | None:intergenic | 45.0% | |
| GTTTCCTCCAATGATCCTTC+TGG | - | chr2_2:48619164-48619183 | None:intergenic | 45.0% | |
| ! | ATTCAGTTCGTGTCGTTGTC+GGG | - | chr2_2:48619436-48619455 | None:intergenic | 45.0% |
| ATCTGTATCTGTGTCGTGTC+TGG | + | chr2_2:48619484-48619503 | Msa0255010:intron | 45.0% | |
| TAATTCGGAATTCGGCCGTT+TGG | - | chr2_2:48620382-48620401 | None:intergenic | 45.0% | |
| ATTTCTAATTGCAGGCAGGG+AGG | + | chr2_2:48620543-48620562 | Msa0255010:intron | 45.0% | |
| TTTCTAATTGCAGGCAGGGA+GGG | + | chr2_2:48620544-48620563 | Msa0255010:intron | 45.0% | |
| GCAGAGGAAACTCTAAGCAT+AGG | + | chr2_2:48620574-48620593 | Msa0255010:CDS | 45.0% | |
| !! | AGGCATTGGGGATTCTTTGA+AGG | + | chr2_2:48620769-48620788 | Msa0255010:CDS | 45.0% |
| TTGGACCATCTTTCCAGTAG+GGG | - | chr2_2:48620812-48620831 | None:intergenic | 45.0% | |
| GGAAAGATGGTCCAATTCTC+TGG | + | chr2_2:48620817-48620836 | Msa0255010:CDS | 45.0% | |
| ! | ATGGTCCAATTCTCTGGCTT+GGG | + | chr2_2:48620823-48620842 | Msa0255010:CDS | 45.0% |
| TTTACTGCAAGCAAAGGCCA+TGG | + | chr2_2:48620996-48621015 | Msa0255010:intron | 45.0% | |
| TATGTGATAGGTCGGAGATG+TGG | - | chr2_2:48621305-48621324 | None:intergenic | 45.0% | |
| ! | CTTCAAAGTGTCATCCACCT+AGG | - | chr2_2:48621516-48621535 | None:intergenic | 45.0% |
| CTAGGTGGATGACACTTTGA+AGG | + | chr2_2:48621514-48621533 | Msa0255010:intron | 45.0% | |
| GTGGAGATTTACTATGACCC+AGG | + | chr2_2:48621545-48621564 | Msa0255010:CDS | 45.0% | |
| TATGACCCAGGAGAGTTGTT+TGG | + | chr2_2:48621557-48621576 | Msa0255010:CDS | 45.0% | |
| TTTGGAGGCCTTCTATCAAG+CGG | + | chr2_2:48621575-48621594 | Msa0255010:CDS | 45.0% | |
| TGCTATCTCCGCTTGATAGA+AGG | - | chr2_2:48621586-48621605 | None:intergenic | 45.0% | |
| !!! | ATTTTTATTTATCTTTTTAA+TGG | + | chr2_2:48619605-48619624 | Msa0255010:intron | 5.0% |
| !!! | TTTTTATTTATCTTTTTAAT+GGG | + | chr2_2:48619606-48619625 | Msa0255010:intron | 5.0% |
| !!! | ATTTTTTGAATATTATTAAT+TGG | + | chr2_2:48620262-48620281 | Msa0255010:intron | 5.0% |
| TGACAAGACCATAGGTGGGA+GGG | - | chr2_2:48619009-48619028 | None:intergenic | 50.0% | |
| TTGACAAGACCATAGGTGGG+AGG | - | chr2_2:48619010-48619029 | None:intergenic | 50.0% | |
| CTGGTTGACAAGACCATAGG+TGG | - | chr2_2:48619014-48619033 | None:intergenic | 50.0% | |
| GAGCTGGTTGACAAGACCAT+AGG | - | chr2_2:48619017-48619036 | None:intergenic | 50.0% | |
| GGAATGGCCAGAAGGATCAT+TGG | + | chr2_2:48619154-48619173 | Msa0255010:intron | 50.0% | |
| ATGGCCAGAAGGATCATTGG+AGG | + | chr2_2:48619157-48619176 | Msa0255010:CDS | 50.0% | |
| ! | TGGTCTTGAAGTCCTGCAAG+CGG | - | chr2_2:48619235-48619254 | None:intergenic | 50.0% |
| GGACGGACAATCATCGGATT+AGG | + | chr2_2:48619382-48619401 | Msa0255010:intron | 50.0% | |
| GATTAGGCGTGTCCTGGTAT+CGG | + | chr2_2:48619398-48619417 | Msa0255010:intron | 50.0% | |
| ! | TGATCGACTCCTATCCACCT+TGG | + | chr2_2:48619539-48619558 | Msa0255010:intron | 50.0% |
| ! | GTAGGGGCATGTCCCTTAAA+AGG | - | chr2_2:48620796-48620815 | None:intergenic | 50.0% |
| TTTAAGGGACATGCCCCTAC+TGG | + | chr2_2:48620796-48620815 | Msa0255010:CDS | 50.0% | |
| ACATGCCCCTACTGGAAAGA+TGG | + | chr2_2:48620804-48620823 | Msa0255010:CDS | 50.0% | |
| GATGGTCCAATTCTCTGGCT+TGG | + | chr2_2:48620822-48620841 | Msa0255010:CDS | 50.0% | |
| GAGTTCCCAAGCCAGAGAAT+TGG | - | chr2_2:48620831-48620850 | None:intergenic | 50.0% | |
| AGAAAATACCCATGGGGCCA+TGG | - | chr2_2:48621016-48621035 | None:intergenic | 50.0% | |
| ! | GTGGAGGTTGACTTTGTACG+AGG | + | chr2_2:48621054-48621073 | Msa0255010:intron | 50.0% |
| TGATAGGTCGGAGATGTGGT+AGG | - | chr2_2:48621301-48621320 | None:intergenic | 50.0% | |
| GACACACAAGATCCGCTTGC+AGG | + | chr2_2:48619220-48619239 | Msa0255010:CDS | 55.0% | |
| ! | TCATCGGATTAGGCGTGTCC+TGG | + | chr2_2:48619392-48619411 | Msa0255010:intron | 55.0% |
| CACGACACGTTTCCGATACC+AGG | - | chr2_2:48619413-48619432 | None:intergenic | 55.0% | |
| AGAGCGGCTGCCAAGAACAT+TGG | + | chr2_2:48619884-48619903 | Msa0255010:intron | 55.0% | |
| CAGGGAGGGATTAACTGCAG+AGG | + | chr2_2:48620558-48620577 | Msa0255010:CDS | 55.0% | |
| !! | CTCTGGCTTGGGAACTCTCA+AGG | + | chr2_2:48620834-48620853 | Msa0255010:CDS | 55.0% |
| GACCCAGGAGAGTTGTTTGG+AGG | + | chr2_2:48621560-48621579 | Msa0255010:CDS | 55.0% | |
| GGCCTCCAAACAACTCTCCT+GGG | - | chr2_2:48621565-48621584 | None:intergenic | 55.0% | |
| AGGCCTCCAAACAACTCTCC+TGG | - | chr2_2:48621566-48621585 | None:intergenic | 55.0% | |
| AAGCAAAGGCCATGGCCCCA+TGG | + | chr2_2:48621004-48621023 | Msa0255010:intron | 60.0% | |
| AGCAAAGGCCATGGCCCCAT+GGG | + | chr2_2:48621005-48621024 | Msa0255010:intron | 60.0% | |
| GAGGGCCACCATGTCTCCAC+TGG | - | chr2_2:48618991-48619010 | None:intergenic | 65.0% | |
| CATGGTGGCCCTCCCACCTA+TGG | + | chr2_2:48618998-48619017 | Msa0255010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 48618926 | 48621637 | 48618926 | ID=Msa0255010;Name=Msa0255010 |
| chr2_2 | mRNA | 48618926 | 48621637 | 48618926 | ID=Msa0255010-mRNA-1;Parent=Msa0255010;Name=Msa0255010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|1|1|1|4|0|227 |
| chr2_2 | exon | 48618926 | 48619057 | 48618926 | ID=Msa0255010-mRNA-1:exon:14728;Parent=Msa0255010-mRNA-1 |
| chr2_2 | exon | 48619155 | 48619287 | 48619155 | ID=Msa0255010-mRNA-1:exon:14729;Parent=Msa0255010-mRNA-1 |
| chr2_2 | exon | 48620557 | 48620855 | 48620557 | ID=Msa0255010-mRNA-1:exon:14730;Parent=Msa0255010-mRNA-1 |
| chr2_2 | exon | 48621518 | 48621637 | 48621518 | ID=Msa0255010-mRNA-1:exon:14731;Parent=Msa0255010-mRNA-1 |
| chr2_2 | CDS | 48618926 | 48619057 | 48618926 | ID=Msa0255010-mRNA-1:cds;Parent=Msa0255010-mRNA-1 |
| chr2_2 | CDS | 48619155 | 48619287 | 48619155 | ID=Msa0255010-mRNA-1:cds;Parent=Msa0255010-mRNA-1 |
| chr2_2 | CDS | 48620557 | 48620855 | 48620557 | ID=Msa0255010-mRNA-1:cds;Parent=Msa0255010-mRNA-1 |
| chr2_2 | CDS | 48621518 | 48621637 | 48621518 | ID=Msa0255010-mRNA-1:cds;Parent=Msa0255010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
