AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651820 MtrunA17_Chr4g0045011 94.944 178 4 1 1 178 1 173 1.94e-123 345
Msa0651820 MtrunA17_Chr4g0045001 96.552 116 4 0 64 179 46 161 3.54e-81 238
Msa0651820 MtrunA17_Chr8g0391431 48.980 147 68 1 39 178 15 161 5.67e-43 141
Msa0651820 MtrunA17_Chr5g0402421 55.263 114 48 1 68 178 51 164 4.40e-40 134
Msa0651820 MtrunA17_Chr8g0391441 50.000 140 70 0 39 178 4 143 3.46e-37 126
Msa0651820 MtrunA17_Chr6g0484871 50.435 115 56 1 64 178 13 126 1.58e-31 111
Msa0651820 MtrunA17_Chr1g0187341 56.757 111 47 1 68 178 11 120 7.65e-31 109
Msa0651820 MtrunA17_Chr2g0331531 44.545 110 61 0 69 178 33 142 4.62e-27 100
Msa0651820 MtrunA17_Chr8g0391401 43.860 114 62 2 67 178 7 120 9.16e-25 94.0
Msa0651820 MtrunA17_Chr5g0395991 41.667 108 48 4 82 174 3 110 4.55e-18 76.3
Msa0651820 MtrunA17_Chr4g0021021 31.056 161 69 5 46 174 18 168 1.16e-12 63.5
Msa0651820 MtrunA17_Chr3g0079081 28.662 157 73 3 44 171 44 190 1.51e-12 63.5
Msa0651820 MtrunA17_Chr8g0371431 30.952 168 103 5 9 172 246 404 1.52e-12 64.7
Msa0651820 MtrunA17_Chr5g0405841 35.043 117 69 3 59 172 285 397 6.42e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651820 AT1G14870.1 54.955 111 50 0 68 178 15 125 2.63e-43 141
Msa0651820 AT1G14870.2 54.955 111 50 0 69 179 16 126 5.06e-43 140
Msa0651820 AT5G35525.1 56.757 111 48 0 68 178 15 125 5.75e-43 140
Msa0651820 AT3G18470.1 54.464 112 51 0 67 178 3 114 5.07e-39 130
Msa0651820 AT1G49030.1 40.678 177 82 4 25 178 21 197 5.15e-36 125
Msa0651820 AT1G14880.1 48.649 111 57 0 68 178 14 124 7.13e-36 122
Msa0651820 AT3G18460.1 50.000 110 54 1 69 178 54 162 8.07e-36 123
Msa0651820 AT1G68610.1 54.918 122 52 2 60 178 10 131 3.78e-33 116
Msa0651820 AT3G18450.1 44.643 112 61 1 67 178 50 160 1.55e-31 112
Msa0651820 AT1G68630.1 47.200 125 60 2 54 178 19 137 1.59e-29 107
Msa0651820 AT1G52200.2 41.481 135 78 1 45 179 30 163 2.05e-28 104
Msa0651820 AT1G52200.1 41.045 134 78 1 45 178 30 162 7.20e-28 103
Msa0651820 AT1G58320.1 51.327 113 51 4 68 178 16 126 3.02e-27 100
Msa0651820 AT2G40935.8 36.905 168 83 5 22 171 2 164 1.06e-24 95.1
Msa0651820 AT2G40935.9 36.905 168 83 5 22 171 2 164 1.06e-24 95.1
Msa0651820 AT2G40935.1 36.905 168 83 5 22 171 2 164 1.06e-24 95.1
Msa0651820 AT2G40935.6 36.905 168 83 5 22 171 2 164 1.06e-24 95.1
Msa0651820 AT2G40935.5 36.905 168 83 5 22 171 2 164 1.06e-24 95.1
Msa0651820 AT2G40935.3 33.929 168 77 6 22 171 2 153 1.58e-17 76.3
Msa0651820 AT2G45010.2 32.143 140 66 2 64 174 11 150 5.12e-17 75.5
Msa0651820 AT2G45010.1 32.143 140 66 2 64 174 57 196 7.84e-17 75.9
Msa0651820 AT2G40935.2 36.000 150 68 6 40 171 1 140 7.11e-16 71.6
Msa0651820 AT2G40935.7 36.000 150 68 6 40 171 1 140 7.11e-16 71.6
Msa0651820 AT2G40935.4 36.000 150 68 6 40 171 1 140 7.11e-16 71.6
Msa0651820 AT5G51400.1 32.143 140 66 3 64 174 57 196 1.06e-14 70.1

Find 50 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGATGGAACCATTTA+TGG 0.167415 4_3:-59325970 Msa0651820:CDS
TTCTGCCCATGTGTTACTTT+TGG 0.260194 4_3:-59326408 Msa0651820:CDS
CTTGAACTGGTGCTGATATA+TGG 0.295600 4_3:+59326600 None:intergenic
AGCCAGTAGCGCCCCATAAA+TGG 0.315061 4_3:+59325957 None:intergenic
TCTTGGGATGCCCCTTGAAC+TGG 0.352985 4_3:+59326587 None:intergenic
CTTGCCAGAGGCACCTTGTA+TGG 0.360121 4_3:-59325872 Msa0651820:CDS
ACATGATCTGTTTCACTTAC+GGG 0.365548 4_3:+59326729 None:intergenic
GGAGCATAAGGTTGTGAAAC+TGG 0.373604 4_3:+59326624 None:intergenic
GTTGACCAGTGATGTGTTCT+TGG 0.377366 4_3:+59326570 None:intergenic
GTCATATTGTGCCCTCAGTT+TGG 0.383713 4_3:+59325894 None:intergenic
TGAAACTTGTGCTCTTTGTC+AGG 0.408519 4_3:-59325827 Msa0651820:CDS
ACACGATCCTTACAGATTCC+AGG 0.423026 4_3:+59326522 None:intergenic
AGAACACATCACTGGTCAAC+TGG 0.424557 4_3:-59326567 Msa0651820:CDS
TGCCGTTGTCTTGATGATCC+TGG 0.428665 4_3:-59326540 Msa0651820:CDS
TACATGATCTGTTTCACTTA+CGG 0.430083 4_3:+59326728 None:intergenic
CTGATATATGGAGGAGCATA+AGG 0.431906 4_3:+59326612 None:intergenic
AACCATTTATGGGGCGCTAC+TGG 0.441904 4_3:-59325959 Msa0651820:CDS
CAATCCATACAAGGTGCCTC+TGG 0.468885 4_3:+59325868 None:intergenic
TTGACCAGTGATGTGTTCTT+GGG 0.472581 4_3:+59326571 None:intergenic
GGGGCGCTACTGGCTGTGTC+GGG 0.479808 4_3:-59325949 Msa0651820:CDS
TGGGGCGCTACTGGCTGTGT+CGG 0.483383 4_3:-59325950 Msa0651820:CDS
CTTGTGATGGAACCATTTAT+GGG 0.487235 4_3:-59325969 Msa0651820:CDS
GTCCTACAAATGCCAAGTTA+TGG 0.492297 4_3:-59326651 Msa0651820:CDS
TGCCATAACTTGGCATTTGT+AGG 0.492803 4_3:+59326649 None:intergenic
CATATATCAGCACCAGTTCA+AGG 0.493929 4_3:-59326599 Msa0651820:CDS
GGGAGGATACATAATGTTGT+TGG 0.511787 4_3:+59326749 None:intergenic
GGACATAGCCTTGACCTTGA+GGG 0.520075 4_3:+59326670 None:intergenic
GAAACTGGCATGCCATAACT+TGG 0.522579 4_3:+59326639 None:intergenic
TATGCAGATCATAGTAGTCA+TGG 0.562595 4_3:-59326705 Msa0651820:CDS
AGGATACATAATGTTGTTGG+TGG 0.565615 4_3:+59326752 None:intergenic
GTTATTATCGCTCCAAACTG+AGG 0.566691 4_3:-59325906 Msa0651820:CDS
ATATATCAGCACCAGTTCAA+GGG 0.567137 4_3:-59326598 Msa0651820:CDS
AGGACATAGCCTTGACCTTG+AGG 0.581870 4_3:+59326669 None:intergenic
GACATAGCCTTGACCTTGAG+GGG 0.583468 4_3:+59326671 None:intergenic
TATGCAGCTTGCACTTGTGA+TGG 0.588927 4_3:-59325982 Msa0651820:intron
CGTGGATATGACTTGAGCAT+AGG 0.597514 4_3:-59325784 Msa0651820:CDS
ATCAATCCAAAAGTAACACA+TGG 0.609342 4_3:+59326402 None:intergenic
TTATTATCGCTCCAAACTGA+GGG 0.613169 4_3:-59325905 Msa0651820:CDS
GCATCCCAAGAACACATCAC+TGG 0.621240 4_3:-59326575 Msa0651820:CDS
TATATCAGCACCAGTTCAAG+GGG 0.623123 4_3:-59326597 Msa0651820:CDS
TTGTGATGGAACCATTTATG+GGG 0.625239 4_3:-59325968 Msa0651820:CDS
TGAACTAAACAATCCATACA+AGG 0.640319 4_3:+59325859 None:intergenic
CTATGCTCAAGTCATATCCA+CGG 0.662249 4_3:+59325785 None:intergenic
TTCCAGGATCATCAAGACAA+CGG 0.663060 4_3:+59326538 None:intergenic
TGATCTGTTTCACTTACGGG+AGG 0.664833 4_3:+59326732 None:intergenic
ATAGCAGAGATAGTAGACAA+AGG 0.671471 4_3:-59326381 Msa0651820:CDS
ACATAGCCTTGACCTTGAGG+GGG 0.690202 4_3:+59326672 None:intergenic
TCAATCCAAAAGTAACACAT+GGG 0.696087 4_3:+59326403 None:intergenic
GAACTGGTGCTGATATATGG+AGG 0.713639 4_3:+59326603 None:intergenic
GGCACAATATGACTTGCCAG+AGG 0.740534 4_3:-59325884 Msa0651820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATGAAATTAAGTTAA+GGG - chr4_3:59326475-59326494 Msa0651820:intron 10.0%
!! ATTAAATGAAATTAAGTTAA+GGG - chr4_3:59326475-59326494 Msa0651820:intron 10.0%
!!! AATATATGTGTTTTAAAGAA+AGG + chr4_3:59326057-59326076 None:intergenic 15.0%
!!! TCTTTAAAACACATATATTA+TGG - chr4_3:59326058-59326077 Msa0651820:intron 15.0%
!!! TTTTTCTTTTCTAATTGATA+AGG - chr4_3:59326092-59326111 Msa0651820:intron 15.0%
!!! TAAGCTTTTACATAAAATAT+AGG - chr4_3:59326191-59326210 Msa0651820:intron 15.0%
!!! CTTAATTTCATTTAATGTTT+TGG + chr4_3:59326471-59326490 None:intergenic 15.0%
!! CATTAAATGAAATTAAGTTA+AGG - chr4_3:59326474-59326493 Msa0651820:intron 15.0%
!!! CAAATTATTTATCATGTTTT+TGG - chr4_3:59326529-59326548 Msa0651820:intron 15.0%
!!! AATATATGTGTTTTAAAGAA+AGG + chr4_3:59326057-59326076 None:intergenic 15.0%
!!! TCTTTAAAACACATATATTA+TGG - chr4_3:59326058-59326077 Msa0651820:intron 15.0%
!!! TTTTTCTTTTCTAATTGATA+AGG - chr4_3:59326092-59326111 Msa0651820:intron 15.0%
!!! TAAGCTTTTACATAAAATAT+AGG - chr4_3:59326191-59326210 Msa0651820:intron 15.0%
!!! CTTAATTTCATTTAATGTTT+TGG + chr4_3:59326471-59326490 None:intergenic 15.0%
!! CATTAAATGAAATTAAGTTA+AGG - chr4_3:59326474-59326493 Msa0651820:intron 15.0%
!!! CAAATTATTTATCATGTTTT+TGG - chr4_3:59326529-59326548 Msa0651820:intron 15.0%
!!! TATCTTTTTTCATGTCATTT+TGG - chr4_3:59326267-59326286 Msa0651820:intron 20.0%
!!! TATCTTTTTTCATGTCATTT+TGG - chr4_3:59326267-59326286 Msa0651820:intron 20.0%
!! CTTTTCTAATTGATAAGGTT+TGG - chr4_3:59326097-59326116 Msa0651820:intron 25.0%
!! TTTAATTTCAAGTGACGTTT+AGG - chr4_3:59326239-59326258 Msa0651820:intron 25.0%
! ATGACATGAAAAAAGATACA+AGG + chr4_3:59326265-59326284 None:intergenic 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG - chr4_3:59326305-59326324 Msa0651820:intron 25.0%
!! TTTATTTACCTATGACTTGT+CGG - chr4_3:59326329-59326348 Msa0651820:intron 25.0%
! CTTGAAAATTCATATGCAAA+CGG - chr4_3:59326406-59326425 Msa0651820:CDS 25.0%
! TTTATGCAAAATTAAACCAG+TGG + chr4_3:59326502-59326521 None:intergenic 25.0%
!! CTTTTCTAATTGATAAGGTT+TGG - chr4_3:59326097-59326116 Msa0651820:intron 25.0%
!! TTTAATTTCAAGTGACGTTT+AGG - chr4_3:59326239-59326258 Msa0651820:intron 25.0%
! ATGACATGAAAAAAGATACA+AGG + chr4_3:59326265-59326284 None:intergenic 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG - chr4_3:59326305-59326324 Msa0651820:intron 25.0%
!! TTTATTTACCTATGACTTGT+CGG - chr4_3:59326329-59326348 Msa0651820:intron 25.0%
! CTTGAAAATTCATATGCAAA+CGG - chr4_3:59326406-59326425 Msa0651820:CDS 25.0%
! TTTATGCAAAATTAAACCAG+TGG + chr4_3:59326502-59326521 None:intergenic 25.0%
TACATGATCTGTTTCACTTA+CGG + chr4_3:59325811-59325830 None:intergenic 30.0%
TCAATCCAAAAGTAACACAT+GGG + chr4_3:59326136-59326155 None:intergenic 30.0%
ATCAATCCAAAAGTAACACA+TGG + chr4_3:59326137-59326156 None:intergenic 30.0%
TCATGTTCATATGCAAACAT+GGG + chr4_3:59326377-59326396 None:intergenic 30.0%
!! GCTTTTTCTCACGTAATTTT+GGG + chr4_3:59326441-59326460 None:intergenic 30.0%
!! AGCTTTTTCTCACGTAATTT+TGG + chr4_3:59326442-59326461 None:intergenic 30.0%
TGAACTAAACAATCCATACA+AGG + chr4_3:59326680-59326699 None:intergenic 30.0%
TACATGATCTGTTTCACTTA+CGG + chr4_3:59325811-59325830 None:intergenic 30.0%
TCAATCCAAAAGTAACACAT+GGG + chr4_3:59326136-59326155 None:intergenic 30.0%
ATCAATCCAAAAGTAACACA+TGG + chr4_3:59326137-59326156 None:intergenic 30.0%
TCATGTTCATATGCAAACAT+GGG + chr4_3:59326377-59326396 None:intergenic 30.0%
!! GCTTTTTCTCACGTAATTTT+GGG + chr4_3:59326441-59326460 None:intergenic 30.0%
!! AGCTTTTTCTCACGTAATTT+TGG + chr4_3:59326442-59326461 None:intergenic 30.0%
TGAACTAAACAATCCATACA+AGG + chr4_3:59326680-59326699 None:intergenic 30.0%
AGGATACATAATGTTGTTGG+TGG + chr4_3:59325787-59325806 None:intergenic 35.0%
ACATGATCTGTTTCACTTAC+GGG + chr4_3:59325810-59325829 None:intergenic 35.0%
TATGCAGATCATAGTAGTCA+TGG - chr4_3:59325831-59325850 Msa0651820:CDS 35.0%
ATATATCAGCACCAGTTCAA+GGG - chr4_3:59325938-59325957 Msa0651820:CDS 35.0%
ATAGCAGAGATAGTAGACAA+AGG - chr4_3:59326155-59326174 Msa0651820:intron 35.0%
CTCATGTTCATATGCAAACA+TGG + chr4_3:59326378-59326397 None:intergenic 35.0%
AAATTAAGTTAAGGGACCAC+TGG - chr4_3:59326483-59326502 Msa0651820:intron 35.0%
! ACTTGTGATGGAACCATTTA+TGG - chr4_3:59326566-59326585 Msa0651820:CDS 35.0%
! CTTGTGATGGAACCATTTAT+GGG - chr4_3:59326567-59326586 Msa0651820:CDS 35.0%
! TTGTGATGGAACCATTTATG+GGG - chr4_3:59326568-59326587 Msa0651820:CDS 35.0%
TTATTATCGCTCCAAACTGA+GGG - chr4_3:59326631-59326650 Msa0651820:CDS 35.0%
AGGATACATAATGTTGTTGG+TGG + chr4_3:59325787-59325806 None:intergenic 35.0%
ACATGATCTGTTTCACTTAC+GGG + chr4_3:59325810-59325829 None:intergenic 35.0%
TATGCAGATCATAGTAGTCA+TGG - chr4_3:59325831-59325850 Msa0651820:CDS 35.0%
ATATATCAGCACCAGTTCAA+GGG - chr4_3:59325938-59325957 Msa0651820:CDS 35.0%
ATAGCAGAGATAGTAGACAA+AGG - chr4_3:59326155-59326174 Msa0651820:intron 35.0%
CTCATGTTCATATGCAAACA+TGG + chr4_3:59326378-59326397 None:intergenic 35.0%
AAATTAAGTTAAGGGACCAC+TGG - chr4_3:59326483-59326502 Msa0651820:intron 35.0%
! ACTTGTGATGGAACCATTTA+TGG - chr4_3:59326566-59326585 Msa0651820:CDS 35.0%
! CTTGTGATGGAACCATTTAT+GGG - chr4_3:59326567-59326586 Msa0651820:CDS 35.0%
! TTGTGATGGAACCATTTATG+GGG - chr4_3:59326568-59326587 Msa0651820:CDS 35.0%
TTATTATCGCTCCAAACTGA+GGG - chr4_3:59326631-59326650 Msa0651820:CDS 35.0%
GGGAGGATACATAATGTTGT+TGG + chr4_3:59325790-59325809 None:intergenic 40.0%
GTCCTACAAATGCCAAGTTA+TGG - chr4_3:59325885-59325904 Msa0651820:CDS 40.0%
TGCCATAACTTGGCATTTGT+AGG + chr4_3:59325890-59325909 None:intergenic 40.0%
! CTGATATATGGAGGAGCATA+AGG + chr4_3:59325927-59325946 None:intergenic 40.0%
!! CTTGAACTGGTGCTGATATA+TGG + chr4_3:59325939-59325958 None:intergenic 40.0%
CATATATCAGCACCAGTTCA+AGG - chr4_3:59325937-59325956 Msa0651820:CDS 40.0%
TATATCAGCACCAGTTCAAG+GGG - chr4_3:59325939-59325958 Msa0651820:CDS 40.0%
TTGACCAGTGATGTGTTCTT+GGG + chr4_3:59325968-59325987 None:intergenic 40.0%
TTCCAGGATCATCAAGACAA+CGG + chr4_3:59326001-59326020 None:intergenic 40.0%
TGATGATCCTGGAATCTGTA+AGG - chr4_3:59326007-59326026 Msa0651820:intron 40.0%
!!! TTCTGCCCATGTGTTACTTT+TGG - chr4_3:59326128-59326147 Msa0651820:intron 40.0%
TTTGAAGACCGACAAGTCAT+AGG + chr4_3:59326340-59326359 None:intergenic 40.0%
CTTGTCGGTCTTCAAATCTA+TGG - chr4_3:59326344-59326363 Msa0651820:intron 40.0%
! TCACGTAATTTTGGGCCTTT+CGG + chr4_3:59326433-59326452 None:intergenic 40.0%
GTTATTATCGCTCCAAACTG+AGG - chr4_3:59326630-59326649 Msa0651820:CDS 40.0%
TGAAACTTGTGCTCTTTGTC+AGG - chr4_3:59326709-59326728 Msa0651820:CDS 40.0%
TATAGAGAGCTCAAAAACCG+TGG - chr4_3:59326734-59326753 Msa0651820:CDS 40.0%
CTATGCTCAAGTCATATCCA+CGG + chr4_3:59326754-59326773 None:intergenic 40.0%
GGGAGGATACATAATGTTGT+TGG + chr4_3:59325790-59325809 None:intergenic 40.0%
GTCCTACAAATGCCAAGTTA+TGG - chr4_3:59325885-59325904 Msa0651820:CDS 40.0%
TGCCATAACTTGGCATTTGT+AGG + chr4_3:59325890-59325909 None:intergenic 40.0%
! CTGATATATGGAGGAGCATA+AGG + chr4_3:59325927-59325946 None:intergenic 40.0%
!! CTTGAACTGGTGCTGATATA+TGG + chr4_3:59325939-59325958 None:intergenic 40.0%
CATATATCAGCACCAGTTCA+AGG - chr4_3:59325937-59325956 Msa0651820:CDS 40.0%
TATATCAGCACCAGTTCAAG+GGG - chr4_3:59325939-59325958 Msa0651820:CDS 40.0%
TTGACCAGTGATGTGTTCTT+GGG + chr4_3:59325968-59325987 None:intergenic 40.0%
TTCCAGGATCATCAAGACAA+CGG + chr4_3:59326001-59326020 None:intergenic 40.0%
TGATGATCCTGGAATCTGTA+AGG - chr4_3:59326007-59326026 Msa0651820:intron 40.0%
!!! TTCTGCCCATGTGTTACTTT+TGG - chr4_3:59326128-59326147 Msa0651820:intron 40.0%
TTTGAAGACCGACAAGTCAT+AGG + chr4_3:59326340-59326359 None:intergenic 40.0%
CTTGTCGGTCTTCAAATCTA+TGG - chr4_3:59326344-59326363 Msa0651820:intron 40.0%
! TCACGTAATTTTGGGCCTTT+CGG + chr4_3:59326433-59326452 None:intergenic 40.0%
GTTATTATCGCTCCAAACTG+AGG - chr4_3:59326630-59326649 Msa0651820:CDS 40.0%
TGAAACTTGTGCTCTTTGTC+AGG - chr4_3:59326709-59326728 Msa0651820:CDS 40.0%
TATAGAGAGCTCAAAAACCG+TGG - chr4_3:59326734-59326753 Msa0651820:CDS 40.0%
CTATGCTCAAGTCATATCCA+CGG + chr4_3:59326754-59326773 None:intergenic 40.0%
TGATCTGTTTCACTTACGGG+AGG + chr4_3:59325807-59325826 None:intergenic 45.0%
GAAACTGGCATGCCATAACT+TGG + chr4_3:59325900-59325919 None:intergenic 45.0%
GGAGCATAAGGTTGTGAAAC+TGG + chr4_3:59325915-59325934 None:intergenic 45.0%
!! GAACTGGTGCTGATATATGG+AGG + chr4_3:59325936-59325955 None:intergenic 45.0%
GTTGACCAGTGATGTGTTCT+TGG + chr4_3:59325969-59325988 None:intergenic 45.0%
AGAACACATCACTGGTCAAC+TGG - chr4_3:59325969-59325988 Msa0651820:CDS 45.0%
ACACGATCCTTACAGATTCC+AGG + chr4_3:59326017-59326036 None:intergenic 45.0%
TCATATGCAAACGGACCGAA+AGG - chr4_3:59326415-59326434 Msa0651820:CDS 45.0%
TATGCAGCTTGCACTTGTGA+TGG - chr4_3:59326554-59326573 Msa0651820:CDS 45.0%
GTCATATTGTGCCCTCAGTT+TGG + chr4_3:59326645-59326664 None:intergenic 45.0%
CGTGGATATGACTTGAGCAT+AGG - chr4_3:59326752-59326771 Msa0651820:CDS 45.0%
TGATCTGTTTCACTTACGGG+AGG + chr4_3:59325807-59325826 None:intergenic 45.0%
GAAACTGGCATGCCATAACT+TGG + chr4_3:59325900-59325919 None:intergenic 45.0%
GGAGCATAAGGTTGTGAAAC+TGG + chr4_3:59325915-59325934 None:intergenic 45.0%
!! GAACTGGTGCTGATATATGG+AGG + chr4_3:59325936-59325955 None:intergenic 45.0%
GTTGACCAGTGATGTGTTCT+TGG + chr4_3:59325969-59325988 None:intergenic 45.0%
AGAACACATCACTGGTCAAC+TGG - chr4_3:59325969-59325988 Msa0651820:CDS 45.0%
ACACGATCCTTACAGATTCC+AGG + chr4_3:59326017-59326036 None:intergenic 45.0%
TCATATGCAAACGGACCGAA+AGG - chr4_3:59326415-59326434 Msa0651820:CDS 45.0%
TATGCAGCTTGCACTTGTGA+TGG - chr4_3:59326554-59326573 Msa0651820:CDS 45.0%
GTCATATTGTGCCCTCAGTT+TGG + chr4_3:59326645-59326664 None:intergenic 45.0%
CGTGGATATGACTTGAGCAT+AGG - chr4_3:59326752-59326771 Msa0651820:CDS 45.0%
! ACATAGCCTTGACCTTGAGG+GGG + chr4_3:59325867-59325886 None:intergenic 50.0%
! GACATAGCCTTGACCTTGAG+GGG + chr4_3:59325868-59325887 None:intergenic 50.0%
! GGACATAGCCTTGACCTTGA+GGG + chr4_3:59325869-59325888 None:intergenic 50.0%
! AGGACATAGCCTTGACCTTG+AGG + chr4_3:59325870-59325889 None:intergenic 50.0%
GCATCCCAAGAACACATCAC+TGG - chr4_3:59325961-59325980 Msa0651820:CDS 50.0%
! TGCCGTTGTCTTGATGATCC+TGG - chr4_3:59325996-59326015 Msa0651820:intron 50.0%
! AACCATTTATGGGGCGCTAC+TGG - chr4_3:59326577-59326596 Msa0651820:CDS 50.0%
! GGCACAATATGACTTGCCAG+AGG - chr4_3:59326652-59326671 Msa0651820:CDS 50.0%
! CAATCCATACAAGGTGCCTC+TGG + chr4_3:59326671-59326690 None:intergenic 50.0%
! ACATAGCCTTGACCTTGAGG+GGG + chr4_3:59325867-59325886 None:intergenic 50.0%
! GACATAGCCTTGACCTTGAG+GGG + chr4_3:59325868-59325887 None:intergenic 50.0%
! GGACATAGCCTTGACCTTGA+GGG + chr4_3:59325869-59325888 None:intergenic 50.0%
! AGGACATAGCCTTGACCTTG+AGG + chr4_3:59325870-59325889 None:intergenic 50.0%
GCATCCCAAGAACACATCAC+TGG - chr4_3:59325961-59325980 Msa0651820:CDS 50.0%
! TGCCGTTGTCTTGATGATCC+TGG - chr4_3:59325996-59326015 Msa0651820:intron 50.0%
! AACCATTTATGGGGCGCTAC+TGG - chr4_3:59326577-59326596 Msa0651820:CDS 50.0%
! GGCACAATATGACTTGCCAG+AGG - chr4_3:59326652-59326671 Msa0651820:CDS 50.0%
! CAATCCATACAAGGTGCCTC+TGG + chr4_3:59326671-59326690 None:intergenic 50.0%
TCTTGGGATGCCCCTTGAAC+TGG + chr4_3:59325952-59325971 None:intergenic 55.0%
AGCCAGTAGCGCCCCATAAA+TGG + chr4_3:59326582-59326601 None:intergenic 55.0%
!! CTTGCCAGAGGCACCTTGTA+TGG - chr4_3:59326664-59326683 Msa0651820:CDS 55.0%
TCTTGGGATGCCCCTTGAAC+TGG + chr4_3:59325952-59325971 None:intergenic 55.0%
AGCCAGTAGCGCCCCATAAA+TGG + chr4_3:59326582-59326601 None:intergenic 55.0%
!! CTTGCCAGAGGCACCTTGTA+TGG - chr4_3:59326664-59326683 Msa0651820:CDS 55.0%
GACCTTGAGGGGGATGGCTA+TGG + chr4_3:59325857-59325876 None:intergenic 60.0%
AGCCATCCCCCTCAAGGTCA+AGG - chr4_3:59325858-59325877 Msa0651820:CDS 60.0%
AGCCTTGACCTTGAGGGGGA+TGG + chr4_3:59325863-59325882 None:intergenic 60.0%
GACCTTGAGGGGGATGGCTA+TGG + chr4_3:59325857-59325876 None:intergenic 60.0%
AGCCATCCCCCTCAAGGTCA+AGG - chr4_3:59325858-59325877 Msa0651820:CDS 60.0%
AGCCTTGACCTTGAGGGGGA+TGG + chr4_3:59325863-59325882 None:intergenic 60.0%
GGCCATAGCCATCCCCCTCA+AGG - chr4_3:59325852-59325871 Msa0651820:CDS 65.0%
! TGGGGCGCTACTGGCTGTGT+CGG - chr4_3:59326586-59326605 Msa0651820:CDS 65.0%
GGCCATAGCCATCCCCCTCA+AGG - chr4_3:59325852-59325871 Msa0651820:CDS 65.0%
! TGGGGCGCTACTGGCTGTGT+CGG - chr4_3:59326586-59326605 Msa0651820:CDS 65.0%
! GGGGCGCTACTGGCTGTGTC+GGG - chr4_3:59326587-59326606 Msa0651820:CDS 70.0%
! GGGGCGCTACTGGCTGTGTC+GGG - chr4_3:59326587-59326606 Msa0651820:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 59325777 59326781 59325777 ID=Msa0651820;Name=Msa0651820
chr4_3 mRNA 59325777 59326781 59325777 ID=Msa0651820-mRNA-1;Parent=Msa0651820;Name=Msa0651820-mRNA-1;_AED=0.24;_eAED=0.26;_QI=0|0|0|1|1|1|3|0|179
chr4_3 exon 59326535 59326781 59326535 ID=Msa0651820-mRNA-1:exon:15908;Parent=Msa0651820-mRNA-1
chr4_3 exon 59326373 59326444 59326373 ID=Msa0651820-mRNA-1:exon:15907;Parent=Msa0651820-mRNA-1
chr4_3 exon 59325777 59325997 59325777 ID=Msa0651820-mRNA-1:exon:15906;Parent=Msa0651820-mRNA-1
chr4_3 CDS 59326535 59326781 59326535 ID=Msa0651820-mRNA-1:cds;Parent=Msa0651820-mRNA-1
chr4_3 CDS 59326373 59326444 59326373 ID=Msa0651820-mRNA-1:cds;Parent=Msa0651820-mRNA-1
chr4_3 CDS 59325777 59325997 59325777 ID=Msa0651820-mRNA-1:cds;Parent=Msa0651820-mRNA-1
Gene Sequence

>Msa0651820

ATGAATTCCACCAACAACATTATGTATCCTCCCGTAAGTGAAACAGATCATGTATATGCAGATCATAGTAGTCATGGCCATAGCCATCCCCCTCAAGGTCAAGGCTATGTCCTACAAATGCCAAGTTATGGCATGCCAGTTTCACAACCTTATGCTCCTCCATATATCAGCACCAGTTCAAGGGGCATCCCAAGAACACATCACTGGTCAACTGGTCTTTGCCGTTGTCTTGATGATCCTGGAATCTGTTTGGTCACTTGCTTCTGCCCATGTGTTACTTTTGGATTGATAGCAGAGATAGTAGACAAAGGCAATTCAACTTGCACTTGTGATGGAACCATTTATGGGGCGCTACTGGCTGTGTCGGGACTTGCATGTTTATATTCATGTTATTATCGCTCCAAACTGAGGGCACAATATGACTTGCCAGAGGCACCTTGTATGGATTGTTTAGTTCATTTTTGTTGTGAAACTTGTGCTCTTTGTCAGGAATATAGAGAGCTCAAAAACCGTGGATATGACTTGAGCATAGGTACCTAA

Protein sequence

>Msa0651820

MNSTNNIMYPPVSETDHVYADHSSHGHSHPPQGQGYVLQMPSYGMPVSQPYAPPYISTSSRGIPRTHHWSTGLCRCLDDPGICLVTCFCPCVTFGLIAEIVDKGNSTCTCDGTIYGALLAVSGLACLYSCYYRSKLRAQYDLPEAPCMDCLVHFCCETCALCQEYRELKNRGYDLSIGT*