AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0599600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599600 MtrunA17_Chr4g0024121 80.982 326 8 2 6 277 1 326 0.0 525
Msa0599600 MtrunA17_Chr2g0322861 57.313 335 82 7 1 277 55 386 3.57e-129 372
Msa0599600 MtrunA17_Chr7g0268501 41.718 326 130 6 6 277 1 320 3.03e-80 245
Msa0599600 MtrunA17_Chr7g0268521 41.718 326 130 6 6 277 1 320 3.03e-80 245
Msa0599600 MtrunA17_Chr5g0402581 35.331 317 149 4 16 277 11 326 3.56e-61 196
Msa0599600 MtrunA17_Chr5g0402571 34.700 317 151 5 16 277 11 326 5.20e-60 193
Msa0599600 MtrunA17_Chr3g0128061 36.050 319 149 3 14 277 8 326 6.09e-59 190
Msa0599600 MtrunA17_Chr2g0279041 37.309 327 139 8 12 277 4 325 1.20e-56 184
Msa0599600 MtrunA17_Chr1g0204011 34.891 321 150 6 11 277 7 322 2.64e-56 183
Msa0599600 MtrunA17_Chr3g0129051 34.426 305 151 6 18 273 14 318 5.03e-56 183
Msa0599600 MtrunA17_Chr5g0405991 38.532 327 133 9 8 277 1 316 6.30e-56 182
Msa0599600 MtrunA17_Chr2g0292241 34.985 323 148 6 16 277 9 330 7.29e-56 183
Msa0599600 MtrunA17_Chr6g0477071 37.542 301 135 6 25 277 47 342 3.23e-55 181
Msa0599600 MtrunA17_Chr2g0292211 34.337 332 156 6 7 277 11 341 4.13e-55 181
Msa0599600 MtrunA17_Chr2g0292181 34.579 321 148 6 18 277 20 339 6.38e-55 181
Msa0599600 MtrunA17_Chr5g0404721 37.748 302 131 5 32 277 30 330 9.06e-55 180
Msa0599600 MtrunA17_Chr2g0299691 36.482 307 132 7 31 277 55 358 4.62e-54 179
Msa0599600 MtrunA17_Chr1g0175561 32.209 326 162 6 10 277 2 326 1.08e-52 174
Msa0599600 MtrunA17_Chr2g0292261 33.956 321 150 7 18 277 11 330 1.29e-52 175
Msa0599600 MtrunA17_Chr2g0292111 34.451 328 150 7 14 277 4 330 1.42e-52 175
Msa0599600 MtrunA17_Chr6g0460711 33.438 320 149 7 15 277 2 314 1.51e-52 174
Msa0599600 MtrunA17_Chr2g0291751 33.956 321 149 6 19 277 11 330 2.76e-52 174
Msa0599600 MtrunA17_Chr1g0188431 32.911 316 159 4 10 277 17 327 2.85e-52 173
Msa0599600 MtrunA17_Chr3g0106921 35.168 327 150 9 6 277 1 320 2.94e-52 173
Msa0599600 MtrunA17_Chr3g0114451 34.603 315 155 5 13 277 5 318 3.61e-52 172
Msa0599600 MtrunA17_Chr2g0292251 36.039 308 139 6 27 277 23 329 3.93e-52 174
Msa0599600 MtrunA17_Chr2g0320101 31.889 323 165 6 3 277 2 317 5.52e-52 172
Msa0599600 MtrunA17_Chr8g0371381 35.738 305 136 6 27 277 21 319 9.73e-52 172
Msa0599600 MtrunA17_Chr2g0320071 32.198 323 164 6 3 277 2 317 1.12e-51 171
Msa0599600 MtrunA17_Chr2g0292151 34.139 331 156 6 8 277 1 330 1.99e-51 172
Msa0599600 MtrunA17_Chr7g0258811 32.508 323 159 6 13 277 50 371 2.76e-51 172
Msa0599600 MtrunA17_Chr7g0225221 34.688 320 154 7 10 277 4 320 4.67e-51 170
Msa0599600 MtrunA17_Chr2g0279061 39.847 261 113 6 56 277 11 266 7.14e-51 168
Msa0599600 MtrunA17_Chr4g0063671 33.540 322 150 7 15 277 4 320 7.56e-51 169
Msa0599600 MtrunA17_Chr7g0244461 32.154 311 162 4 15 277 3 312 8.47e-51 169
Msa0599600 MtrunA17_Chr7g0244451 33.762 311 157 4 15 277 7 316 1.24e-50 169
Msa0599600 MtrunA17_Chr2g0292091 33.333 327 159 8 8 277 1 325 7.10e-50 167
Msa0599600 MtrunA17_Chr8g0372601 34.768 302 140 5 32 277 30 330 2.82e-49 166
Msa0599600 MtrunA17_Chr7g0254201 33.444 302 140 7 30 277 18 312 2.85e-49 165
Msa0599600 MtrunA17_Chr4g0070951 32.923 325 156 6 12 277 8 329 3.58e-49 165
Msa0599600 MtrunA17_Chr4g0038161 33.121 314 155 6 17 277 9 320 4.75e-49 165
Msa0599600 MtrunA17_Chr2g0292271 33.333 321 156 5 14 277 11 330 1.88e-48 164
Msa0599600 MtrunA17_Chr4g0013171 32.298 322 165 7 8 277 1 321 3.52e-48 162
Msa0599600 MtrunA17_Chr4g0038151 32.803 314 157 6 16 277 10 321 4.70e-48 162
Msa0599600 MtrunA17_Chr7g0254231 32.770 296 147 6 30 277 20 311 8.80e-48 161
Msa0599600 MtrunA17_Chr4g0043391 31.562 320 162 7 14 277 6 324 1.04e-47 161
Msa0599600 MtrunA17_Chr5g0432441 32.907 313 157 7 17 277 15 326 1.06e-47 161
Msa0599600 MtrunA17_Chr2g0320061 32.484 314 160 6 13 277 8 318 1.37e-47 161
Msa0599600 MtrunA17_Chr2g0320051 32.803 314 159 6 13 277 8 318 1.43e-47 160
Msa0599600 MtrunA17_Chr5g0438021 33.121 314 157 6 17 277 12 325 1.51e-47 161
Msa0599600 MtrunA17_Chr2g0320091 32.484 314 160 7 13 277 8 318 1.57e-47 160
Msa0599600 MtrunA17_Chr8g0364291 32.317 328 160 8 8 277 1 324 4.74e-47 160
Msa0599600 MtrunA17_Chr1g0213061 33.229 319 159 9 10 277 6 321 6.27e-47 159
Msa0599600 MtrunA17_Chr4g0013201 30.887 327 159 6 17 277 13 338 8.64e-47 159
Msa0599600 MtrunA17_Chr4g0038171 32.308 325 163 7 6 277 1 321 2.83e-46 157
Msa0599600 MtrunA17_Chr3g0129061 33.442 308 154 6 16 273 12 318 3.91e-46 157
Msa0599600 MtrunA17_Chr4g0013721 32.143 308 150 6 25 277 93 396 5.95e-46 159
Msa0599600 MtrunA17_Chr2g0320031 31.629 313 166 6 13 277 7 319 7.42e-46 156
Msa0599600 MtrunA17_Chr4g0013191 31.402 328 158 7 17 277 13 340 8.95e-46 157
Msa0599600 MtrunA17_Chr1g0157051 33.123 317 149 8 16 276 8 317 2.29e-45 155
Msa0599600 MtrunA17_Chr2g0292291 32.919 322 153 8 18 277 12 332 2.46e-45 156
Msa0599600 MtrunA17_Chr1g0164891 35.197 304 137 7 33 277 90 392 3.78e-45 156
Msa0599600 MtrunA17_Chr4g0053871 33.866 313 151 6 17 276 14 323 4.08e-45 154
Msa0599600 MtrunA17_Chr2g0292101 32.915 319 155 7 16 277 10 326 1.75e-44 153
Msa0599600 MtrunA17_Chr4g0013181 34.496 258 137 5 51 277 97 353 1.79e-44 154
Msa0599600 MtrunA17_Chr3g0129041 34.202 307 153 7 16 273 12 318 2.86e-44 152
Msa0599600 MtrunA17_Chr5g0401431 32.915 319 155 4 16 276 11 328 3.12e-44 152
Msa0599600 MtrunA17_Chr1g0197411 31.532 333 164 10 4 277 3 330 3.56e-44 152
Msa0599600 MtrunA17_Chr5g0421411 35.145 276 135 9 44 277 12 285 1.00e-43 150
Msa0599600 MtrunA17_Chr5g0400331 34.768 302 137 7 36 277 30 331 2.61e-43 150
Msa0599600 MtrunA17_Chr4g0013821 30.820 305 152 6 28 277 24 324 6.27e-43 149
Msa0599600 MtrunA17_Chr7g0224371 31.034 319 170 6 7 277 6 322 6.59e-43 149
Msa0599600 MtrunA17_Chr3g0136751 31.348 319 157 6 16 277 9 322 9.88e-43 148
Msa0599600 MtrunA17_Chr3g0106901 30.625 320 173 4 6 277 5 323 7.17e-42 146
Msa0599600 MtrunA17_Chr5g0432341 32.492 317 159 9 14 277 7 321 1.08e-41 145
Msa0599600 MtrunA17_Chr4g0046131 32.237 304 145 7 31 274 41 343 1.57e-41 145
Msa0599600 MtrunA17_Chr2g0296621 34.323 303 131 9 32 277 50 341 1.76e-41 145
Msa0599600 MtrunA17_Chr6g0467251 28.923 325 171 7 6 273 3 324 2.27e-41 145
Msa0599600 MtrunA17_Chr5g0432351 31.861 317 161 10 14 277 7 321 1.03e-40 143
Msa0599600 MtrunA17_Chr2g0278671 32.581 310 149 8 25 277 17 323 1.67e-40 142
Msa0599600 MtrunA17_Chr4g0068621 30.921 304 155 6 28 277 34 336 3.66e-40 142
Msa0599600 MtrunA17_Chr1g0194151 31.153 321 161 8 16 277 14 333 4.33e-40 142
Msa0599600 MtrunA17_Chr1g0194271 29.573 328 164 8 16 277 14 340 5.30e-39 139
Msa0599600 MtrunA17_Chr4g0074851 30.034 293 154 3 36 277 36 328 1.01e-38 138
Msa0599600 MtrunA17_Chr1g0155611 31.683 303 149 5 32 277 46 347 2.88e-38 137
Msa0599600 MtrunA17_Chr1g0148021 31.818 330 163 7 8 277 1 328 4.67e-38 136
Msa0599600 MtrunA17_Chr3g0107881 32.508 323 159 10 10 277 6 324 1.93e-37 134
Msa0599600 MtrunA17_Chr4g0072091 30.769 299 149 5 31 273 23 319 4.73e-37 133
Msa0599600 MtrunA17_Chr1g0181511 30.000 300 157 5 30 277 25 323 6.70e-37 133
Msa0599600 MtrunA17_Chr6g0467121 30.909 330 160 9 10 277 40 363 1.18e-36 134
Msa0599600 MtrunA17_Chr4g0076211 31.208 298 142 7 35 277 44 333 1.21e-36 132
Msa0599600 MtrunA17_Chr6g0451571 28.391 317 170 6 17 277 19 334 3.34e-36 131
Msa0599600 MtrunA17_Chr5g0432331 29.755 326 174 9 5 277 29 352 4.38e-36 132
Msa0599600 MtrunA17_Chr6g0467161 29.747 316 164 11 16 277 25 336 4.48e-35 129
Msa0599600 MtrunA17_Chr1g0181431 28.667 300 161 6 30 277 25 323 5.82e-35 128
Msa0599600 MtrunA17_Chr5g0432401 31.142 289 159 9 11 273 8 282 8.18e-35 127
Msa0599600 MtrunA17_Chr2g0329641 30.061 326 161 8 14 277 15 335 2.05e-34 127
Msa0599600 MtrunA17_Chr1g0181481 28.000 300 163 4 30 277 25 323 4.17e-34 125
Msa0599600 MtrunA17_Chr2g0316141 31.047 277 140 7 47 274 1 275 4.94e-33 122
Msa0599600 MtrunA17_Chr2g0316181 31.047 277 140 7 47 274 1 275 4.94e-33 122
Msa0599600 MtrunA17_Chr2g0311251 44.444 153 65 2 30 162 9 161 2.18e-31 119
Msa0599600 MtrunA17_Chr4g0075241 26.646 319 173 7 16 277 13 327 2.86e-30 115
Msa0599600 MtrunA17_Chr2g0316481 42.857 154 67 2 30 162 74 227 3.37e-30 117
Msa0599600 MtrunA17_Chr2g0316791 42.857 154 67 2 30 162 74 227 7.08e-30 116
Msa0599600 MtrunA17_Chr2g0316811 42.208 154 68 2 30 162 48 201 3.58e-29 113
Msa0599600 MtrunA17_Chr2g0316831 40.909 154 70 2 30 162 110 263 1.96e-28 112
Msa0599600 MtrunA17_Chr2g0316191 40.909 154 70 2 30 162 74 227 1.05e-27 110
Msa0599600 MtrunA17_Chr2g0311241 25.000 372 150 8 30 274 58 427 4.51e-27 108
Msa0599600 MtrunA17_Chr5g0413051 28.939 311 162 8 26 277 67 377 1.20e-25 104
Msa0599600 MtrunA17_Chr2g0292281 33.649 211 92 7 104 277 17 216 5.44e-23 94.4
Msa0599600 MtrunA17_Chr4g0004591 28.094 299 137 10 32 274 77 353 1.31e-21 92.8
Msa0599600 MtrunA17_Chr1g0196191 60.938 64 25 0 59 122 31 94 4.05e-20 84.7
Msa0599600 MtrunA17_Chr1g0181491 37.037 108 50 1 30 119 10 117 3.00e-19 82.0
Msa0599600 MtrunA17_Chr7g0268491 43.902 82 45 1 196 277 17 97 4.35e-18 77.4
Msa0599600 MtrunA17_Chr6g0468731 55.224 67 27 1 53 119 23 86 6.23e-18 77.0
Msa0599600 MtrunA17_Chr3g0114491 43.119 109 42 3 31 119 17 125 3.42e-17 76.3
Msa0599600 MtrunA17_Chr7g0254181 38.462 104 60 2 60 162 6 106 1.72e-15 72.0
Msa0599600 MtrunA17_Chr7g0254171 45.205 73 40 0 59 131 4 76 1.68e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599600 AT4G11290.1 47.799 318 110 5 16 277 9 326 1.01e-98 292
Msa0599600 AT1G05260.1 48.718 312 104 5 21 277 15 325 3.88e-97 288
Msa0599600 AT3G21770.1 46.602 309 109 5 21 274 18 325 2.09e-90 271
Msa0599600 AT5G15180.1 43.465 329 126 8 6 277 4 329 3.39e-82 250
Msa0599600 AT3G01190.1 42.991 321 120 8 15 277 6 321 5.21e-76 234
Msa0599600 AT1G05240.1 39.404 302 117 8 36 277 30 325 1.20e-63 203
Msa0599600 AT1G05250.1 39.404 302 117 8 36 277 30 325 1.20e-63 203
Msa0599600 AT5G39580.1 36.086 327 144 8 8 277 1 319 5.28e-58 188
Msa0599600 AT4G33420.1 36.246 309 146 8 17 277 20 325 7.69e-56 182
Msa0599600 AT4G33420.2 35.922 309 147 7 17 277 67 372 3.10e-55 182
Msa0599600 AT2G18150.1 34.740 308 144 5 26 277 30 336 6.94e-55 181
Msa0599600 AT5G14130.1 33.962 318 149 8 17 277 17 330 4.24e-53 176
Msa0599600 AT5G51890.1 32.915 319 149 7 17 277 11 322 9.53e-53 174
Msa0599600 AT5G14130.2 33.962 318 149 8 17 277 58 371 1.11e-52 176
Msa0599600 AT2G41480.1 34.234 333 153 9 6 277 1 328 1.34e-52 174
Msa0599600 AT5G17820.1 34.076 314 143 6 18 277 10 313 3.03e-52 173
Msa0599600 AT5G19890.1 34.347 329 148 9 8 277 8 327 3.22e-52 173
Msa0599600 AT3G50990.1 36.156 307 139 5 27 277 36 341 1.40e-51 172
Msa0599600 AT5G17820.2 34.154 325 149 7 7 277 53 366 1.42e-51 173
Msa0599600 AT3G03670.1 32.704 318 158 4 14 277 6 321 1.57e-51 171
Msa0599600 AT2G18140.1 34.985 323 152 7 12 277 14 335 1.63e-51 172
Msa0599600 AT2G39040.1 37.061 313 134 9 26 277 40 350 2.98e-51 172
Msa0599600 AT5G64120.1 33.333 333 154 8 8 277 1 328 5.80e-51 170
Msa0599600 AT4G36430.1 33.019 318 153 6 19 277 14 330 6.13e-51 170
Msa0599600 AT2G24800.1 34.539 304 140 5 30 277 29 329 1.16e-50 169
Msa0599600 AT3G32980.1 31.138 334 169 6 4 277 2 334 5.41e-50 168
Msa0599600 AT5G64100.1 36.333 300 126 8 35 277 40 331 2.73e-49 166
Msa0599600 AT5G66390.1 34.603 315 149 6 19 277 20 333 2.81e-49 166
Msa0599600 AT5G42180.1 33.441 311 148 5 17 273 8 313 4.55e-49 165
Msa0599600 AT1G14550.1 32.381 315 161 7 14 277 8 321 5.21e-49 165
Msa0599600 AT2G38390.1 31.562 320 160 6 16 277 15 333 5.97e-49 166
Msa0599600 AT4G26010.2 34.161 322 158 8 2 277 24 337 1.04e-48 165
Msa0599600 AT5G06730.1 30.503 318 163 6 17 277 18 334 3.36e-48 164
Msa0599600 AT4G26010.1 34.528 307 149 7 17 277 9 309 4.55e-48 162
Msa0599600 AT5G06720.1 30.818 318 162 5 17 277 17 333 6.18e-48 162
Msa0599600 AT4G08770.1 32.698 315 146 7 25 277 17 327 6.65e-48 163
Msa0599600 AT3G49110.1 32.000 325 159 6 14 277 13 336 4.41e-47 161
Msa0599600 AT2G38380.1 31.875 320 159 6 16 277 15 333 4.96e-47 160
Msa0599600 AT1G77100.1 34.098 305 147 7 25 277 17 319 6.33e-47 159
Msa0599600 AT5G05340.1 33.893 298 148 6 29 277 27 324 6.71e-47 159
Msa0599600 AT3G49120.1 31.546 317 157 5 20 277 20 335 7.82e-47 160
Msa0599600 AT1G71695.1 34.228 298 142 6 32 277 44 339 8.78e-47 160
Msa0599600 AT1G34510.1 32.166 314 161 7 9 277 3 309 1.53e-46 158
Msa0599600 AT5G58400.1 34.091 308 152 8 17 273 14 321 3.03e-46 158
Msa0599600 AT4G31760.1 32.177 317 154 6 17 277 15 326 1.67e-45 156
Msa0599600 AT1G14540.1 31.210 314 164 8 14 277 4 315 2.50e-45 155
Msa0599600 AT2G22420.1 30.599 317 160 7 16 277 8 319 4.89e-45 155
Msa0599600 AT3G49960.1 34.568 324 149 6 16 277 7 329 5.98e-45 154
Msa0599600 AT4G37530.1 33.762 311 147 5 25 277 20 329 8.14e-45 154
Msa0599600 AT5G19880.1 31.515 330 165 9 8 277 1 329 1.13e-44 154
Msa0599600 AT2G35380.1 33.851 322 153 7 16 277 14 335 1.31e-44 154
Msa0599600 AT2G18980.1 34.347 329 151 8 8 277 1 323 1.99e-43 150
Msa0599600 AT4G17690.1 31.270 307 158 6 23 277 17 322 2.45e-43 150
Msa0599600 AT1G68850.1 32.979 282 147 8 38 277 54 335 4.63e-43 150
Msa0599600 AT4G21960.1 30.183 328 170 7 8 277 1 327 5.48e-43 149
Msa0599600 AT1G44970.1 33.441 311 149 6 24 277 37 346 8.50e-43 149
Msa0599600 AT5G67400.1 33.333 309 147 4 27 277 22 329 1.24e-42 149
Msa0599600 AT5G64110.1 32.667 300 139 6 35 277 37 330 1.27e-42 149
Msa0599600 AT5G58390.1 31.410 312 161 9 14 273 2 312 1.46e-42 148
Msa0599600 AT4G08780.1 31.111 315 151 7 25 277 17 327 1.73e-42 149
Msa0599600 AT4G16270.1 32.886 298 143 7 35 277 53 348 1.77e-42 149
Msa0599600 AT4G37520.1 33.333 306 145 5 30 277 25 329 4.62e-42 147
Msa0599600 AT1G49570.1 31.579 304 149 7 30 275 46 348 4.64e-42 147
Msa0599600 AT4G25980.1 30.312 320 161 8 17 277 10 326 1.19e-40 143
Msa0599600 AT5G40150.1 29.801 302 161 3 27 277 27 328 2.11e-40 143
Msa0599600 AT4G37520.2 33.333 306 142 6 30 277 25 326 6.59e-40 141
Msa0599600 AT4G33870.1 29.254 335 147 6 29 274 65 398 2.67e-39 142
Msa0599600 AT3G28200.1 28.571 301 165 3 27 277 16 316 4.33e-38 136
Msa0599600 AT5G47000.1 30.218 321 161 9 16 277 14 330 8.15e-38 136
Msa0599600 AT5G22410.1 31.230 317 152 12 16 273 12 321 1.39e-36 133
Msa0599600 AT2G34060.1 30.263 304 153 5 29 273 39 342 5.81e-36 131
Msa0599600 AT1G24110.1 28.115 313 167 5 19 273 6 318 3.43e-35 129
Msa0599600 AT4G30170.1 31.373 306 147 6 30 277 25 325 3.66e-35 129
Msa0599600 AT2G35380.2 35.102 245 118 6 74 277 3 247 5.10e-35 126
Msa0599600 AT2G43480.1 34.749 259 125 6 58 277 82 335 9.83e-35 128
Msa0599600 AT4G37530.2 33.840 263 115 5 25 229 20 281 4.28e-34 125
Msa0599600 AT1G30870.1 31.353 303 143 8 32 277 51 345 2.68e-33 124
Msa0599600 AT5G24070.1 30.744 309 164 9 10 277 36 335 4.36e-33 124
Msa0599600 AT5G39580.2 34.934 229 102 7 8 214 1 204 1.91e-32 119
Msa0599600 AT2G37130.1 27.152 302 166 5 29 277 27 327 1.71e-31 119
Msa0599600 AT2G37130.2 27.458 295 160 5 36 277 3 296 8.34e-31 117
Msa0599600 AT3G17070.1 26.543 324 174 8 12 273 14 335 3.14e-27 108
Msa0599600 AT4G25980.2 39.850 133 59 2 26 139 65 195 1.02e-26 105
Msa0599600 AT2G24800.2 41.791 134 56 2 30 144 29 159 3.09e-26 103
Msa0599600 AT3G17070.2 27.381 252 146 5 59 273 21 272 1.28e-23 97.4
Msa0599600 AT3G42570.1 35.165 91 58 1 75 164 44 134 5.98e-13 65.5

Find 49 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCCAATTACATGAAAA+TGG 0.170365 4_2:+39433954 Msa0599600:CDS
ATTTGTCTTATAGCAATAAT+TGG 0.198586 4_2:+39434006 Msa0599600:CDS
ATTTGCAGGGTGGGCCTTAT+TGG 0.254925 4_2:+39435057 Msa0599600:intron
AAAACAATTTGTTCAGCTTT+GGG 0.265521 4_2:-39434075 None:intergenic
CAAAACAATTTGTTCAGCTT+TGG 0.265636 4_2:-39434076 None:intergenic
GCATATTCACCGTCTAGATC+TGG 0.345112 4_2:-39435674 None:intergenic
TAGCCTCGAAGTGTAAGATT+TGG 0.347680 4_2:-39434501 None:intergenic
GGAAGGTTCCAACAGGTAGA+AGG 0.383934 4_2:+39435078 Msa0599600:CDS
GGGAGAATTAATGTCAAGAT+TGG 0.389587 4_2:+39435938 Msa0599600:CDS
TCAAATGTATTACGACTTCC+AGG 0.390217 4_2:-39435761 None:intergenic
TCAAACCACACTTATTGAAA+TGG 0.390578 4_2:+39435736 Msa0599600:CDS
AGTCGTAATACATTTGATCT+TGG 0.396009 4_2:+39435767 Msa0599600:CDS
ACTGTCCTCCTAACACTCTT+TGG 0.396163 4_2:+39435164 Msa0599600:CDS
CAACATTGCCAAAGAGTGTT+AGG 0.396433 4_2:-39435172 None:intergenic
TAAGCAATGCAGCATCTGAT+TGG 0.403489 4_2:-39435826 None:intergenic
AGCATCCTTCTCAGCTTGAT+TGG 0.415273 4_2:-39434475 None:intergenic
TTAAAACCTTGAAGTAACTC+TGG 0.458221 4_2:-39433981 None:intergenic
CCTGTTGGAACCTTCCAATA+AGG 0.463341 4_2:-39435071 None:intergenic
GGGAATCCAGAGTTACTTCA+AGG 0.464095 4_2:+39433975 Msa0599600:CDS
ATTCCAAATCTTACACTTCG+AGG 0.467504 4_2:+39434498 Msa0599600:CDS
TCTGCCAATTACATGAAAAT+GGG 0.474216 4_2:+39433955 Msa0599600:CDS
GCAGGGTGGGCCTTATTGGA+AGG 0.485522 4_2:+39435061 Msa0599600:intron
CAAGCAAGTAGTTAAGAGAA+GGG 0.488778 4_2:+39435796 Msa0599600:CDS
TCAAGCAAGTAGTTAAGAGA+AGG 0.493471 4_2:+39435795 Msa0599600:CDS
CATATTCACCGTCTAGATCT+GGG 0.504303 4_2:-39435673 None:intergenic
CCTTATTGGAAGGTTCCAAC+AGG 0.506222 4_2:+39435071 Msa0599600:CDS
AGGACAGTGAGGTTGTGAAA+TGG 0.507765 4_2:-39435149 None:intergenic
TAATGAATTTGGCAAGTCCA+TGG 0.508920 4_2:+39435907 Msa0599600:CDS
GGAGAATTAATGTCAAGATT+GGG 0.509355 4_2:+39435939 Msa0599600:CDS
ACTCCATCCCTTCTACCTGT+TGG 0.547709 4_2:-39435086 None:intergenic
GTGAGGTTGTGAAATGGAGC+AGG 0.547960 4_2:-39435143 None:intergenic
GAAGGTTCCAACAGGTAGAA+GGG 0.566125 4_2:+39435079 Msa0599600:CDS
ACTCATGCTCAATTGCAGCC+AGG 0.571279 4_2:+39434033 Msa0599600:CDS
ACAAACCAATCAAGCTGAGA+AGG 0.572023 4_2:+39434470 Msa0599600:CDS
GTTCCAACAGGTAGAAGGGA+TGG 0.572964 4_2:+39435083 Msa0599600:CDS
AGGGTCCATTTCAATAAGTG+TGG 0.580715 4_2:-39435741 None:intergenic
AATGTCAAGATTGGGACTGA+GGG 0.584429 4_2:+39435947 Msa0599600:CDS
ACACTTATTGAAATGGACCC+TGG 0.584876 4_2:+39435743 Msa0599600:CDS
AAGCAAGTAGTTAAGAGAAG+GGG 0.586770 4_2:+39435797 Msa0599600:CDS
TCAGCACAAGAGACAACACC+AGG 0.593653 4_2:-39434567 None:intergenic
AAACAATTTGTTCAGCTTTG+GGG 0.596812 4_2:-39434074 None:intergenic
TAATGTCAAGATTGGGACTG+AGG 0.599035 4_2:+39435946 Msa0599600:CDS
ATTTCAGGGATGTGATGCAT+CGG 0.627600 4_2:+39434431 Msa0599600:intron
GATCAAGACCCAGATCTAGA+CGG 0.657297 4_2:+39435665 Msa0599600:CDS
GGTTGTGAAATGGAGCAGGA+AGG 0.663275 4_2:-39435139 None:intergenic
CATTGCCAAAGAGTGTTAGG+AGG 0.665435 4_2:-39435169 None:intergenic
AGAGTGTTAGGAGGACAGTG+AGG 0.689613 4_2:-39435160 None:intergenic
CAAATGTATTACGACTTCCA+GGG 0.691933 4_2:-39435760 None:intergenic
CAGCACAAGAGACAACACCA+GGG 0.782900 4_2:-39434566 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGATAAATAATGTTATT+TGG + chr4_2:39434869-39434888 Msa0599600:intron 10.0%
!! TAATTTAAGAAAATAAAAGT+AGG + chr4_2:39435404-39435423 Msa0599600:intron 10.0%
!!! TTACTTTTTTTTTAAAAACT+CGG - chr4_2:39435451-39435470 None:intergenic 10.0%
!! ATTAGATAAATAATGTTATT+TGG + chr4_2:39434869-39434888 Msa0599600:intron 10.0%
!! TAATTTAAGAAAATAAAAGT+AGG + chr4_2:39435404-39435423 Msa0599600:intron 10.0%
!!! TTACTTTTTTTTTAAAAACT+CGG - chr4_2:39435451-39435470 None:intergenic 10.0%
!! GTTTAGTATGTATAATTATT+TGG + chr4_2:39434980-39434999 Msa0599600:intron 15.0%
!!! GTATAATTATTTGGTTTTAT+AGG + chr4_2:39434989-39435008 Msa0599600:intron 15.0%
!! GAAAAATTCTTTAATGAATT+TGG + chr4_2:39435896-39435915 Msa0599600:CDS 15.0%
!! GTTTAGTATGTATAATTATT+TGG + chr4_2:39434980-39434999 Msa0599600:intron 15.0%
!!! GTATAATTATTTGGTTTTAT+AGG + chr4_2:39434989-39435008 Msa0599600:intron 15.0%
!! GAAAAATTCTTTAATGAATT+TGG + chr4_2:39435896-39435915 Msa0599600:CDS 15.0%
!! ATTTGTCTTATAGCAATAAT+TGG + chr4_2:39434006-39434025 Msa0599600:CDS 20.0%
!!! CAAAATATTTTGAAGTGTTT+TGG - chr4_2:39434720-39434739 None:intergenic 20.0%
!!! CAAAACACTTCAAAATATTT+TGG + chr4_2:39434718-39434737 Msa0599600:intron 20.0%
!!! ATATTTTGGATTTTTGAATC+TGG + chr4_2:39434732-39434751 Msa0599600:intron 20.0%
!!! TATTTTGGATTTTTGAATCT+GGG + chr4_2:39434733-39434752 Msa0599600:intron 20.0%
!! TCTGATATGCTATATATATT+TGG + chr4_2:39434807-39434826 Msa0599600:intron 20.0%
!! CTGATATGCTATATATATTT+GGG + chr4_2:39434808-39434827 Msa0599600:intron 20.0%
!! ATTTGTCTTATAGCAATAAT+TGG + chr4_2:39434006-39434025 Msa0599600:CDS 20.0%
!!! CAAAATATTTTGAAGTGTTT+TGG - chr4_2:39434720-39434739 None:intergenic 20.0%
!!! CAAAACACTTCAAAATATTT+TGG + chr4_2:39434718-39434737 Msa0599600:intron 20.0%
!!! ATATTTTGGATTTTTGAATC+TGG + chr4_2:39434732-39434751 Msa0599600:intron 20.0%
!!! TATTTTGGATTTTTGAATCT+GGG + chr4_2:39434733-39434752 Msa0599600:intron 20.0%
!! TCTGATATGCTATATATATT+TGG + chr4_2:39434807-39434826 Msa0599600:intron 20.0%
!! CTGATATGCTATATATATTT+GGG + chr4_2:39434808-39434827 Msa0599600:intron 20.0%
!! AAAACAATTTGTTCAGCTTT+GGG - chr4_2:39434078-39434097 None:intergenic 25.0%
!! TTATTATCTTGTTGTGAATG+TGG + chr4_2:39434394-39434413 Msa0599600:intron 25.0%
!!! AATATTTTGAAGTGTTTTGG+AGG - chr4_2:39434717-39434736 None:intergenic 25.0%
!! TAATGTTATTTGGTTATGCA+TGG + chr4_2:39434879-39434898 Msa0599600:intron 25.0%
!!! TTTAGTTTGTGTGTAGAATT+TGG - chr4_2:39435236-39435255 None:intergenic 25.0%
! AATAAAAAAAGCAGTCAGAT+GGG - chr4_2:39435297-39435316 None:intergenic 25.0%
! ACCAAAACTATCATTATTTC+AGG + chr4_2:39435572-39435591 Msa0599600:intron 25.0%
!! ACCTGAAATAATGATAGTTT+TGG - chr4_2:39435576-39435595 None:intergenic 25.0%
!! ACAAGGCTATATAATTTTAC+TGG + chr4_2:39435635-39435654 Msa0599600:intron 25.0%
!! CTATATAATTTTACTGGCAA+GGG + chr4_2:39435641-39435660 Msa0599600:intron 25.0%
!! AAAACAATTTGTTCAGCTTT+GGG - chr4_2:39434078-39434097 None:intergenic 25.0%
!! TTATTATCTTGTTGTGAATG+TGG + chr4_2:39434394-39434413 Msa0599600:intron 25.0%
!!! AATATTTTGAAGTGTTTTGG+AGG - chr4_2:39434717-39434736 None:intergenic 25.0%
!! TAATGTTATTTGGTTATGCA+TGG + chr4_2:39434879-39434898 Msa0599600:intron 25.0%
!!! TTTAGTTTGTGTGTAGAATT+TGG - chr4_2:39435236-39435255 None:intergenic 25.0%
! AATAAAAAAAGCAGTCAGAT+GGG - chr4_2:39435297-39435316 None:intergenic 25.0%
! ACCAAAACTATCATTATTTC+AGG + chr4_2:39435572-39435591 Msa0599600:intron 25.0%
!! ACCTGAAATAATGATAGTTT+TGG - chr4_2:39435576-39435595 None:intergenic 25.0%
!! ACAAGGCTATATAATTTTAC+TGG + chr4_2:39435635-39435654 Msa0599600:intron 25.0%
!! CTATATAATTTTACTGGCAA+GGG + chr4_2:39435641-39435660 Msa0599600:intron 25.0%
TCTGCCAATTACATGAAAAT+GGG + chr4_2:39433955-39433974 Msa0599600:CDS 30.0%
! GATTCCCATTTTCATGTAAT+TGG - chr4_2:39433962-39433981 None:intergenic 30.0%
TTAAAACCTTGAAGTAACTC+TGG - chr4_2:39433984-39434003 None:intergenic 30.0%
! AAACAATTTGTTCAGCTTTG+GGG - chr4_2:39434077-39434096 None:intergenic 30.0%
! CAAAACAATTTGTTCAGCTT+TGG - chr4_2:39434079-39434098 None:intergenic 30.0%
!!! ATATTTTGACTTTGACTGCT+AGG + chr4_2:39434589-39434608 Msa0599600:CDS 30.0%
!!! TATTTTGACTTTGACTGCTA+GGG + chr4_2:39434590-39434609 Msa0599600:CDS 30.0%
!!! GTGTTTTGGAGGTTTTTATA+GGG - chr4_2:39434706-39434725 None:intergenic 30.0%
!!! AGTGTTTTGGAGGTTTTTAT+AGG - chr4_2:39434707-39434726 None:intergenic 30.0%
CTATACGCTAGTAATGATAA+TGG - chr4_2:39435261-39435280 None:intergenic 30.0%
CAATAAAAAAAGCAGTCAGA+TGG - chr4_2:39435298-39435317 None:intergenic 30.0%
!! TTTAAAAAAAAGCACCGTCA+CGG + chr4_2:39435339-39435358 Msa0599600:intron 30.0%
! GTCAATATTTAAAACTGACG+TGG + chr4_2:39435487-39435506 Msa0599600:intron 30.0%
ATGTCTTCTATATGAAGTGT+CGG + chr4_2:39435520-39435539 Msa0599600:intron 30.0%
TGTTGAAATTGATGAGCAAT+GGG - chr4_2:39435618-39435637 None:intergenic 30.0%
TTGTTGAAATTGATGAGCAA+TGG - chr4_2:39435619-39435638 None:intergenic 30.0%
ATTGCTCATCAATTTCAACA+AGG + chr4_2:39435618-39435637 Msa0599600:intron 30.0%
! GCTATATAATTTTACTGGCA+AGG + chr4_2:39435640-39435659 Msa0599600:intron 30.0%
TCAAACCACACTTATTGAAA+TGG + chr4_2:39435736-39435755 Msa0599600:CDS 30.0%
AGTCGTAATACATTTGATCT+TGG + chr4_2:39435767-39435786 Msa0599600:CDS 30.0%
GGAGAATTAATGTCAAGATT+GGG + chr4_2:39435939-39435958 Msa0599600:CDS 30.0%
TCTGCCAATTACATGAAAAT+GGG + chr4_2:39433955-39433974 Msa0599600:CDS 30.0%
! GATTCCCATTTTCATGTAAT+TGG - chr4_2:39433962-39433981 None:intergenic 30.0%
TTAAAACCTTGAAGTAACTC+TGG - chr4_2:39433984-39434003 None:intergenic 30.0%
! AAACAATTTGTTCAGCTTTG+GGG - chr4_2:39434077-39434096 None:intergenic 30.0%
! CAAAACAATTTGTTCAGCTT+TGG - chr4_2:39434079-39434098 None:intergenic 30.0%
!!! ATATTTTGACTTTGACTGCT+AGG + chr4_2:39434589-39434608 Msa0599600:CDS 30.0%
!!! TATTTTGACTTTGACTGCTA+GGG + chr4_2:39434590-39434609 Msa0599600:CDS 30.0%
!!! GTGTTTTGGAGGTTTTTATA+GGG - chr4_2:39434706-39434725 None:intergenic 30.0%
!!! AGTGTTTTGGAGGTTTTTAT+AGG - chr4_2:39434707-39434726 None:intergenic 30.0%
CTATACGCTAGTAATGATAA+TGG - chr4_2:39435261-39435280 None:intergenic 30.0%
CAATAAAAAAAGCAGTCAGA+TGG - chr4_2:39435298-39435317 None:intergenic 30.0%
!! TTTAAAAAAAAGCACCGTCA+CGG + chr4_2:39435339-39435358 Msa0599600:intron 30.0%
! GTCAATATTTAAAACTGACG+TGG + chr4_2:39435487-39435506 Msa0599600:intron 30.0%
ATGTCTTCTATATGAAGTGT+CGG + chr4_2:39435520-39435539 Msa0599600:intron 30.0%
TGTTGAAATTGATGAGCAAT+GGG - chr4_2:39435618-39435637 None:intergenic 30.0%
TTGTTGAAATTGATGAGCAA+TGG - chr4_2:39435619-39435638 None:intergenic 30.0%
ATTGCTCATCAATTTCAACA+AGG + chr4_2:39435618-39435637 Msa0599600:intron 30.0%
! GCTATATAATTTTACTGGCA+AGG + chr4_2:39435640-39435659 Msa0599600:intron 30.0%
TCAAACCACACTTATTGAAA+TGG + chr4_2:39435736-39435755 Msa0599600:CDS 30.0%
AGTCGTAATACATTTGATCT+TGG + chr4_2:39435767-39435786 Msa0599600:CDS 30.0%
GGAGAATTAATGTCAAGATT+GGG + chr4_2:39435939-39435958 Msa0599600:CDS 30.0%
CTCTGCCAATTACATGAAAA+TGG + chr4_2:39433954-39433973 Msa0599600:CDS 35.0%
TTTCCATGATTGCTTTGTCA+AGG + chr4_2:39434161-39434180 Msa0599600:intron 35.0%
ATACCTTGACAAAGCAATCA+TGG - chr4_2:39434167-39434186 None:intergenic 35.0%
!! TAGCATCGACATATTAATGC+AGG - chr4_2:39434253-39434272 None:intergenic 35.0%
TTGAATAGAATCACGTGTGT+TGG + chr4_2:39434296-39434315 Msa0599600:intron 35.0%
AACTAACATCTGGCATTTCA+GGG + chr4_2:39434417-39434436 Msa0599600:intron 35.0%
ATTCCAAATCTTACACTTCG+AGG + chr4_2:39434498-39434517 Msa0599600:CDS 35.0%
! GGTTTTTATAGGGTGAGAAA+AGG - chr4_2:39434696-39434715 None:intergenic 35.0%
! TTGGATTTTTGAATCTGGGT+TGG + chr4_2:39434737-39434756 Msa0599600:intron 35.0%
! TGGATTTTTGAATCTGGGTT+GGG + chr4_2:39434738-39434757 Msa0599600:intron 35.0%
ATCATGGCAGAACAAACAAA+TGG - chr4_2:39435029-39435048 None:intergenic 35.0%
ATGATTGACATGGATTTGCA+GGG + chr4_2:39435044-39435063 Msa0599600:intron 35.0%
CAAATGTATTACGACTTCCA+GGG - chr4_2:39435763-39435782 None:intergenic 35.0%
TCAAATGTATTACGACTTCC+AGG - chr4_2:39435764-39435783 None:intergenic 35.0%
TCAAGCAAGTAGTTAAGAGA+AGG + chr4_2:39435795-39435814 Msa0599600:CDS 35.0%
CAAGCAAGTAGTTAAGAGAA+GGG + chr4_2:39435796-39435815 Msa0599600:CDS 35.0%
AAGCAAGTAGTTAAGAGAAG+GGG + chr4_2:39435797-39435816 Msa0599600:CDS 35.0%
TAATGAATTTGGCAAGTCCA+TGG + chr4_2:39435907-39435926 Msa0599600:CDS 35.0%
!!! AATTCTCCCCATTTTTTCCA+TGG - chr4_2:39435927-39435946 None:intergenic 35.0%
GGGAGAATTAATGTCAAGAT+TGG + chr4_2:39435938-39435957 Msa0599600:CDS 35.0%
CTCTGCCAATTACATGAAAA+TGG + chr4_2:39433954-39433973 Msa0599600:CDS 35.0%
TTTCCATGATTGCTTTGTCA+AGG + chr4_2:39434161-39434180 Msa0599600:intron 35.0%
ATACCTTGACAAAGCAATCA+TGG - chr4_2:39434167-39434186 None:intergenic 35.0%
!! TAGCATCGACATATTAATGC+AGG - chr4_2:39434253-39434272 None:intergenic 35.0%
TTGAATAGAATCACGTGTGT+TGG + chr4_2:39434296-39434315 Msa0599600:intron 35.0%
AACTAACATCTGGCATTTCA+GGG + chr4_2:39434417-39434436 Msa0599600:intron 35.0%
ATTCCAAATCTTACACTTCG+AGG + chr4_2:39434498-39434517 Msa0599600:CDS 35.0%
! GGTTTTTATAGGGTGAGAAA+AGG - chr4_2:39434696-39434715 None:intergenic 35.0%
! TTGGATTTTTGAATCTGGGT+TGG + chr4_2:39434737-39434756 Msa0599600:intron 35.0%
! TGGATTTTTGAATCTGGGTT+GGG + chr4_2:39434738-39434757 Msa0599600:intron 35.0%
ATCATGGCAGAACAAACAAA+TGG - chr4_2:39435029-39435048 None:intergenic 35.0%
ATGATTGACATGGATTTGCA+GGG + chr4_2:39435044-39435063 Msa0599600:intron 35.0%
CAAATGTATTACGACTTCCA+GGG - chr4_2:39435763-39435782 None:intergenic 35.0%
TCAAATGTATTACGACTTCC+AGG - chr4_2:39435764-39435783 None:intergenic 35.0%
TCAAGCAAGTAGTTAAGAGA+AGG + chr4_2:39435795-39435814 Msa0599600:CDS 35.0%
CAAGCAAGTAGTTAAGAGAA+GGG + chr4_2:39435796-39435815 Msa0599600:CDS 35.0%
AAGCAAGTAGTTAAGAGAAG+GGG + chr4_2:39435797-39435816 Msa0599600:CDS 35.0%
TAATGAATTTGGCAAGTCCA+TGG + chr4_2:39435907-39435926 Msa0599600:CDS 35.0%
!!! AATTCTCCCCATTTTTTCCA+TGG - chr4_2:39435927-39435946 None:intergenic 35.0%
GGGAGAATTAATGTCAAGAT+TGG + chr4_2:39435938-39435957 Msa0599600:CDS 35.0%
! CAGCTTTTAGCATAGAAACC+TGG - chr4_2:39434054-39434073 None:intergenic 40.0%
! ACGTCTTTCATCAGAAGTGT+CGG + chr4_2:39434346-39434365 Msa0599600:intron 40.0%
GTGAATGTGGAACTAACATC+TGG + chr4_2:39434407-39434426 Msa0599600:intron 40.0%
GAACTAACATCTGGCATTTC+AGG + chr4_2:39434416-39434435 Msa0599600:intron 40.0%
ATTTCAGGGATGTGATGCAT+CGG + chr4_2:39434431-39434450 Msa0599600:intron 40.0%
ACAAACCAATCAAGCTGAGA+AGG + chr4_2:39434470-39434489 Msa0599600:CDS 40.0%
TAGCCTCGAAGTGTAAGATT+TGG - chr4_2:39434504-39434523 None:intergenic 40.0%
!!! CAGGGCATTCTTTTTCAACA+AGG - chr4_2:39434551-39434570 None:intergenic 40.0%
CTTGTTGAAAAAGAATGCCC+TGG + chr4_2:39434549-39434568 Msa0599600:CDS 40.0%
TTGTTCTGCCATGATTGACA+TGG + chr4_2:39435034-39435053 Msa0599600:intron 40.0%
CTGCAAATCCATGTCAATCA+TGG - chr4_2:39435045-39435064 None:intergenic 40.0%
CATGATTGACATGGATTTGC+AGG + chr4_2:39435043-39435062 Msa0599600:intron 40.0%
!! CAACATTGCCAAAGAGTGTT+AGG - chr4_2:39435175-39435194 None:intergenic 40.0%
CTAACACTCTTTGGCAATGT+TGG + chr4_2:39435173-39435192 Msa0599600:intron 40.0%
!! AATGACCTAGTCTTGCTTTC+CGG + chr4_2:39435206-39435225 Msa0599600:intron 40.0%
GTGTGTAGAATTTGGCATAC+CGG - chr4_2:39435228-39435247 None:intergenic 40.0%
! GTTGTATTTGATGACCGTGA+CGG - chr4_2:39435356-39435375 None:intergenic 40.0%
! ATTTCAGGTGCACACACAAT+TGG + chr4_2:39435587-39435606 Msa0599600:intron 40.0%
CATATTCACCGTCTAGATCT+GGG - chr4_2:39435676-39435695 None:intergenic 40.0%
AGGGTCCATTTCAATAAGTG+TGG - chr4_2:39435744-39435763 None:intergenic 40.0%
ACACTTATTGAAATGGACCC+TGG + chr4_2:39435743-39435762 Msa0599600:CDS 40.0%
TAAGCAATGCAGCATCTGAT+TGG - chr4_2:39435829-39435848 None:intergenic 40.0%
TGGCAAGTCCATGGAAAAAA+TGG + chr4_2:39435916-39435935 Msa0599600:CDS 40.0%
GGCAAGTCCATGGAAAAAAT+GGG + chr4_2:39435917-39435936 Msa0599600:CDS 40.0%
GCAAGTCCATGGAAAAAATG+GGG + chr4_2:39435918-39435937 Msa0599600:CDS 40.0%
TAATGTCAAGATTGGGACTG+AGG + chr4_2:39435946-39435965 Msa0599600:CDS 40.0%
AATGTCAAGATTGGGACTGA+GGG + chr4_2:39435947-39435966 Msa0599600:CDS 40.0%
! CAGCTTTTAGCATAGAAACC+TGG - chr4_2:39434054-39434073 None:intergenic 40.0%
! ACGTCTTTCATCAGAAGTGT+CGG + chr4_2:39434346-39434365 Msa0599600:intron 40.0%
GTGAATGTGGAACTAACATC+TGG + chr4_2:39434407-39434426 Msa0599600:intron 40.0%
GAACTAACATCTGGCATTTC+AGG + chr4_2:39434416-39434435 Msa0599600:intron 40.0%
ATTTCAGGGATGTGATGCAT+CGG + chr4_2:39434431-39434450 Msa0599600:intron 40.0%
ACAAACCAATCAAGCTGAGA+AGG + chr4_2:39434470-39434489 Msa0599600:CDS 40.0%
TAGCCTCGAAGTGTAAGATT+TGG - chr4_2:39434504-39434523 None:intergenic 40.0%
!!! CAGGGCATTCTTTTTCAACA+AGG - chr4_2:39434551-39434570 None:intergenic 40.0%
CTTGTTGAAAAAGAATGCCC+TGG + chr4_2:39434549-39434568 Msa0599600:CDS 40.0%
TTGTTCTGCCATGATTGACA+TGG + chr4_2:39435034-39435053 Msa0599600:intron 40.0%
CTGCAAATCCATGTCAATCA+TGG - chr4_2:39435045-39435064 None:intergenic 40.0%
CATGATTGACATGGATTTGC+AGG + chr4_2:39435043-39435062 Msa0599600:intron 40.0%
!! CAACATTGCCAAAGAGTGTT+AGG - chr4_2:39435175-39435194 None:intergenic 40.0%
CTAACACTCTTTGGCAATGT+TGG + chr4_2:39435173-39435192 Msa0599600:intron 40.0%
!! AATGACCTAGTCTTGCTTTC+CGG + chr4_2:39435206-39435225 Msa0599600:intron 40.0%
GTGTGTAGAATTTGGCATAC+CGG - chr4_2:39435228-39435247 None:intergenic 40.0%
! GTTGTATTTGATGACCGTGA+CGG - chr4_2:39435356-39435375 None:intergenic 40.0%
! ATTTCAGGTGCACACACAAT+TGG + chr4_2:39435587-39435606 Msa0599600:intron 40.0%
CATATTCACCGTCTAGATCT+GGG - chr4_2:39435676-39435695 None:intergenic 40.0%
AGGGTCCATTTCAATAAGTG+TGG - chr4_2:39435744-39435763 None:intergenic 40.0%
ACACTTATTGAAATGGACCC+TGG + chr4_2:39435743-39435762 Msa0599600:CDS 40.0%
TAAGCAATGCAGCATCTGAT+TGG - chr4_2:39435829-39435848 None:intergenic 40.0%
TGGCAAGTCCATGGAAAAAA+TGG + chr4_2:39435916-39435935 Msa0599600:CDS 40.0%
GGCAAGTCCATGGAAAAAAT+GGG + chr4_2:39435917-39435936 Msa0599600:CDS 40.0%
GCAAGTCCATGGAAAAAATG+GGG + chr4_2:39435918-39435937 Msa0599600:CDS 40.0%
TAATGTCAAGATTGGGACTG+AGG + chr4_2:39435946-39435965 Msa0599600:CDS 40.0%
AATGTCAAGATTGGGACTGA+GGG + chr4_2:39435947-39435966 Msa0599600:CDS 40.0%
GGGAATCCAGAGTTACTTCA+AGG + chr4_2:39433975-39433994 Msa0599600:CDS 45.0%
CTTCTGATGAAAGACGTGTC+TGG - chr4_2:39434343-39434362 None:intergenic 45.0%
AGCATCCTTCTCAGCTTGAT+TGG - chr4_2:39434478-39434497 None:intergenic 45.0%
ATTGACATGGATTTGCAGGG+TGG + chr4_2:39435047-39435066 Msa0599600:intron 45.0%
TTGACATGGATTTGCAGGGT+GGG + chr4_2:39435048-39435067 Msa0599600:intron 45.0%
CCTGTTGGAACCTTCCAATA+AGG - chr4_2:39435074-39435093 None:intergenic 45.0%
CCTTATTGGAAGGTTCCAAC+AGG + chr4_2:39435071-39435090 Msa0599600:CDS 45.0%
GAAGGTTCCAACAGGTAGAA+GGG + chr4_2:39435079-39435098 Msa0599600:CDS 45.0%
AGGACAGTGAGGTTGTGAAA+TGG - chr4_2:39435152-39435171 None:intergenic 45.0%
ACTGTCCTCCTAACACTCTT+TGG + chr4_2:39435164-39435183 Msa0599600:CDS 45.0%
!! CATTGCCAAAGAGTGTTAGG+AGG - chr4_2:39435172-39435191 None:intergenic 45.0%
GATCAAGACCCAGATCTAGA+CGG + chr4_2:39435665-39435684 Msa0599600:CDS 45.0%
GCATATTCACCGTCTAGATC+TGG - chr4_2:39435677-39435696 None:intergenic 45.0%
GGGAATCCAGAGTTACTTCA+AGG + chr4_2:39433975-39433994 Msa0599600:CDS 45.0%
CTTCTGATGAAAGACGTGTC+TGG - chr4_2:39434343-39434362 None:intergenic 45.0%
AGCATCCTTCTCAGCTTGAT+TGG - chr4_2:39434478-39434497 None:intergenic 45.0%
ATTGACATGGATTTGCAGGG+TGG + chr4_2:39435047-39435066 Msa0599600:intron 45.0%
TTGACATGGATTTGCAGGGT+GGG + chr4_2:39435048-39435067 Msa0599600:intron 45.0%
CCTGTTGGAACCTTCCAATA+AGG - chr4_2:39435074-39435093 None:intergenic 45.0%
CCTTATTGGAAGGTTCCAAC+AGG + chr4_2:39435071-39435090 Msa0599600:CDS 45.0%
GAAGGTTCCAACAGGTAGAA+GGG + chr4_2:39435079-39435098 Msa0599600:CDS 45.0%
AGGACAGTGAGGTTGTGAAA+TGG - chr4_2:39435152-39435171 None:intergenic 45.0%
ACTGTCCTCCTAACACTCTT+TGG + chr4_2:39435164-39435183 Msa0599600:CDS 45.0%
!! CATTGCCAAAGAGTGTTAGG+AGG - chr4_2:39435172-39435191 None:intergenic 45.0%
GATCAAGACCCAGATCTAGA+CGG + chr4_2:39435665-39435684 Msa0599600:CDS 45.0%
GCATATTCACCGTCTAGATC+TGG - chr4_2:39435677-39435696 None:intergenic 45.0%
!!! TTATTTTCTTAAATTAATAT+TGG - chr4_2:39435400-39435419 None:intergenic 5.0%
!!! TTATTTTCTTAAATTAATAT+TGG - chr4_2:39435400-39435419 None:intergenic 5.0%
ACTCATGCTCAATTGCAGCC+AGG + chr4_2:39434033-39434052 Msa0599600:CDS 50.0%
GCTGCTAGTGATGGTACACT+AGG - chr4_2:39434123-39434142 None:intergenic 50.0%
ATGAGTGCAGCTGCTAGTGA+TGG - chr4_2:39434132-39434151 None:intergenic 50.0%
CAGCACAAGAGACAACACCA+GGG - chr4_2:39434569-39434588 None:intergenic 50.0%
TCAGCACAAGAGACAACACC+AGG - chr4_2:39434570-39434589 None:intergenic 50.0%
! ATTTGCAGGGTGGGCCTTAT+TGG + chr4_2:39435057-39435076 Msa0599600:intron 50.0%
GGAAGGTTCCAACAGGTAGA+AGG + chr4_2:39435078-39435097 Msa0599600:CDS 50.0%
GTTCCAACAGGTAGAAGGGA+TGG + chr4_2:39435083-39435102 Msa0599600:CDS 50.0%
ACTCCATCCCTTCTACCTGT+TGG - chr4_2:39435089-39435108 None:intergenic 50.0%
GGTTGTGAAATGGAGCAGGA+AGG - chr4_2:39435142-39435161 None:intergenic 50.0%
GTGAGGTTGTGAAATGGAGC+AGG - chr4_2:39435146-39435165 None:intergenic 50.0%
! AGAGTGTTAGGAGGACAGTG+AGG - chr4_2:39435163-39435182 None:intergenic 50.0%
GCATACCGGAAAGCAAGACT+AGG - chr4_2:39435214-39435233 None:intergenic 50.0%
ACTCATGCTCAATTGCAGCC+AGG + chr4_2:39434033-39434052 Msa0599600:CDS 50.0%
GCTGCTAGTGATGGTACACT+AGG - chr4_2:39434123-39434142 None:intergenic 50.0%
ATGAGTGCAGCTGCTAGTGA+TGG - chr4_2:39434132-39434151 None:intergenic 50.0%
CAGCACAAGAGACAACACCA+GGG - chr4_2:39434569-39434588 None:intergenic 50.0%
TCAGCACAAGAGACAACACC+AGG - chr4_2:39434570-39434589 None:intergenic 50.0%
! ATTTGCAGGGTGGGCCTTAT+TGG + chr4_2:39435057-39435076 Msa0599600:intron 50.0%
GGAAGGTTCCAACAGGTAGA+AGG + chr4_2:39435078-39435097 Msa0599600:CDS 50.0%
GTTCCAACAGGTAGAAGGGA+TGG + chr4_2:39435083-39435102 Msa0599600:CDS 50.0%
ACTCCATCCCTTCTACCTGT+TGG - chr4_2:39435089-39435108 None:intergenic 50.0%
GGTTGTGAAATGGAGCAGGA+AGG - chr4_2:39435142-39435161 None:intergenic 50.0%
GTGAGGTTGTGAAATGGAGC+AGG - chr4_2:39435146-39435165 None:intergenic 50.0%
! AGAGTGTTAGGAGGACAGTG+AGG - chr4_2:39435163-39435182 None:intergenic 50.0%
GCATACCGGAAAGCAAGACT+AGG - chr4_2:39435214-39435233 None:intergenic 50.0%
TGGGCGTGCGAGAAATTCAC+AGG + chr4_2:39434757-39434776 Msa0599600:intron 55.0%
GGGCGTGCGAGAAATTCACA+GGG + chr4_2:39434758-39434777 Msa0599600:intron 55.0%
TGGGCGTGCGAGAAATTCAC+AGG + chr4_2:39434757-39434776 Msa0599600:intron 55.0%
GGGCGTGCGAGAAATTCACA+GGG + chr4_2:39434758-39434777 Msa0599600:intron 55.0%
!! GCAGGGTGGGCCTTATTGGA+AGG + chr4_2:39435061-39435080 Msa0599600:intron 60.0%
!! GCAGGGTGGGCCTTATTGGA+AGG + chr4_2:39435061-39435080 Msa0599600:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 39433952 39436003 39433952 ID=Msa0599600;Name=Msa0599600
chr4_2 mRNA 39433952 39436003 39433952 ID=Msa0599600-mRNA-1;Parent=Msa0599600;Name=Msa0599600-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0.33|0.25|4|0|277
chr4_2 exon 39433952 39434125 39433952 ID=Msa0599600-mRNA-1:exon:8609;Parent=Msa0599600-mRNA-1
chr4_2 exon 39434438 39434629 39434438 ID=Msa0599600-mRNA-1:exon:8610;Parent=Msa0599600-mRNA-1
chr4_2 exon 39435065 39435190 39435065 ID=Msa0599600-mRNA-1:exon:8611;Parent=Msa0599600-mRNA-1
chr4_2 exon 39435662 39436003 39435662 ID=Msa0599600-mRNA-1:exon:8612;Parent=Msa0599600-mRNA-1
chr4_2 CDS 39433952 39434125 39433952 ID=Msa0599600-mRNA-1:cds;Parent=Msa0599600-mRNA-1
chr4_2 CDS 39434438 39434629 39434438 ID=Msa0599600-mRNA-1:cds;Parent=Msa0599600-mRNA-1
chr4_2 CDS 39435065 39435190 39435065 ID=Msa0599600-mRNA-1:cds;Parent=Msa0599600-mRNA-1
chr4_2 CDS 39435662 39436003 39435662 ID=Msa0599600-mRNA-1:cds;Parent=Msa0599600-mRNA-1
Gene Sequence

>Msa0599600

ATCTCTGCCAATTACATGAAAATGGGAATCCAGAGTTACTTCAAGGTTTTAATTATTTGTCTTATAGCAATAATTGGATCAACTCATGCTCAATTGCAGCCAGGTTTCTATGCTAAAAGCTGCCCCAAAGCTGAACAAATTGTTTTGAAGTATGTTCATGAACACATTCCTAGTGGATGTGATGCATCGGTACTTCTTAACTCAACACAAACCAATCAAGCTGAGAAGGATGCTATTCCAAATCTTACACTTCGAGGCTATGAATTCATTGACACAATAAAGAGCCTTGTTGAAAAAGAATGCCCTGGTGTTGTCTCTTGTGCTGATATTTTGACTTTGACTGCTAGGGATTCTATTCATGCTATTGGTGGGCCTTATTGGAAGGTTCCAACAGGTAGAAGGGATGGAGTCATATCTAAAGCAGCAGATACTTTTACTAGCCTTCCTGCTCCATTTCACAACCTCACTGTCCTCCTAACACTCTTTGGCAATGGTGATCAAGACCCAGATCTAGACGGTGAATATGCTAAAAATTTGAAAACATTTAAATGTAAGAATATCAATGATCAAACCACACTTATTGAAATGGACCCTGGAAGTCGTAATACATTTGATCTTGGCTATTTCAAGCAAGTAGTTAAGAGAAGGGGTTTGTTCCAATCAGATGCTGCATTGCTTAAAAGCTCTACAACAAGATCTATTCTTGCACATCATCTTCAATCAAATGAAAAATTCTTTAATGAATTTGGCAAGTCCATGGAAAAAATGGGGAGAATTAATGTCAAGATTGGGACTGAGGGAGAGATCAGAAAGCATTGTGCATTTATAAATTAA

Protein sequence

>Msa0599600

ISANYMKMGIQSYFKVLIICLIAIIGSTHAQLQPGFYAKSCPKAEQIVLKYVHEHIPSGCDASVLLNSTQTNQAEKDAIPNLTLRGYEFIDTIKSLVEKECPGVVSCADILTLTARDSIHAIGGPYWKVPTGRRDGVISKAADTFTSLPAPFHNLTVLLTLFGNGDQDPDLDGEYAKNLKTFKCKNINDQTTLIEMDPGSRNTFDLGYFKQVVKRRGLFQSDAALLKSSTTRSILAHHLQSNEKFFNEFGKSMEKMGRINVKIGTEGEIRKHCAFIN*