AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073970 MtrunA17_Chr1g0181511 97.846 325 7 0 1 325 1 325 0.0 668
Msa0073970 MtrunA17_Chr1g0181481 87.692 325 40 0 1 325 1 325 0.0 561
Msa0073970 MtrunA17_Chr1g0181431 87.789 303 37 0 23 325 23 325 0.0 559
Msa0073970 MtrunA17_Chr4g0074851 58.769 325 125 2 8 323 4 328 6.50e-139 396
Msa0073970 MtrunA17_Chr1g0181501 79.474 190 38 1 136 325 3 191 1.21e-108 314
Msa0073970 MtrunA17_Chr5g0404721 43.000 300 161 4 31 323 34 330 7.12e-77 238
Msa0073970 MtrunA17_Chr8g0372601 39.490 314 179 5 17 323 21 330 8.31e-71 223
Msa0073970 MtrunA17_Chr4g0075241 36.452 310 191 4 18 323 20 327 1.18e-70 222
Msa0073970 MtrunA17_Chr7g0254201 38.033 305 179 4 22 323 15 312 3.55e-69 218
Msa0073970 MtrunA17_Chr3g0106921 36.697 327 196 6 1 323 1 320 6.00e-67 213
Msa0073970 MtrunA17_Chr7g0225221 39.117 317 185 5 12 323 7 320 1.08e-66 212
Msa0073970 MtrunA17_Chr6g0460711 34.591 318 196 4 12 323 3 314 1.28e-65 209
Msa0073970 MtrunA17_Chr2g0320031 35.962 317 196 4 9 323 8 319 1.37e-65 209
Msa0073970 MtrunA17_Chr5g0400331 37.421 318 184 4 18 323 17 331 1.38e-65 209
Msa0073970 MtrunA17_Chr7g0254231 37.919 298 178 3 27 324 22 312 2.33e-65 208
Msa0073970 MtrunA17_Chr3g0128061 36.025 322 196 4 11 324 8 327 8.86e-65 207
Msa0073970 MtrunA17_Chr5g0438021 34.862 327 200 4 7 323 2 325 1.60e-64 206
Msa0073970 MtrunA17_Chr3g0129051 34.579 321 192 6 12 323 11 322 2.23e-63 203
Msa0073970 MtrunA17_Chr1g0197411 35.185 324 199 5 9 323 9 330 6.43e-63 202
Msa0073970 MtrunA17_Chr4g0046131 36.184 304 182 5 26 319 41 342 7.00e-63 203
Msa0073970 MtrunA17_Chr1g0175561 35.404 322 194 5 12 324 11 327 7.75e-63 202
Msa0073970 MtrunA17_Chr2g0320101 34.268 321 202 4 7 323 2 317 2.27e-62 201
Msa0073970 MtrunA17_Chr2g0320071 34.579 321 201 4 7 323 2 317 2.30e-62 201
Msa0073970 MtrunA17_Chr2g0296621 38.816 304 169 6 27 324 50 342 5.29e-62 201
Msa0073970 MtrunA17_Chr1g0204011 35.562 329 199 6 1 323 1 322 5.50e-62 200
Msa0073970 MtrunA17_Chr2g0292211 36.923 325 192 5 9 324 22 342 6.73e-62 201
Msa0073970 MtrunA17_Chr2g0292251 36.422 313 188 4 21 325 22 331 1.02e-61 200
Msa0073970 MtrunA17_Chr6g0451571 34.796 319 200 4 11 323 18 334 1.09e-61 199
Msa0073970 MtrunA17_Chr4g0070951 35.061 328 194 8 10 324 9 330 1.30e-61 199
Msa0073970 MtrunA17_Chr7g0258811 35.692 325 197 6 9 324 51 372 1.60e-61 200
Msa0073970 MtrunA17_Chr2g0316191 34.545 330 181 5 25 319 74 403 4.56e-61 200
Msa0073970 MtrunA17_Chr2g0320051 35.082 305 183 5 25 323 23 318 5.96e-61 197
Msa0073970 MtrunA17_Chr6g0467121 35.093 322 189 6 14 324 52 364 8.55e-61 199
Msa0073970 MtrunA17_Chr2g0292241 37.963 324 187 6 10 324 13 331 1.18e-60 197
Msa0073970 MtrunA17_Chr2g0320061 34.579 321 192 6 12 323 7 318 1.24e-60 196
Msa0073970 MtrunA17_Chr7g0244461 31.935 310 205 3 15 323 8 312 1.77e-60 196
Msa0073970 MtrunA17_Chr1g0181491 80.531 113 21 1 24 136 9 120 4.41e-60 189
Msa0073970 MtrunA17_Chr2g0316481 34.650 329 181 6 25 319 74 402 1.43e-59 196
Msa0073970 MtrunA17_Chr2g0316831 34.650 329 181 5 25 319 110 438 2.39e-59 196
Msa0073970 MtrunA17_Chr3g0114451 35.099 302 190 3 23 323 22 318 3.00e-59 192
Msa0073970 MtrunA17_Chr2g0316791 34.650 329 181 5 25 319 74 402 3.17e-59 195
Msa0073970 MtrunA17_Chr5g0432441 36.164 318 196 5 9 323 13 326 4.08e-59 192
Msa0073970 MtrunA17_Chr4g0024121 34.347 329 207 3 1 323 1 326 5.57e-59 192
Msa0073970 MtrunA17_Chr5g0405991 36.478 318 189 6 11 323 7 316 6.22e-59 192
Msa0073970 MtrunA17_Chr4g0013201 34.667 300 190 3 25 323 44 338 8.51e-59 192
Msa0073970 MtrunA17_Chr1g0213061 33.750 320 199 7 12 324 9 322 1.38e-58 191
Msa0073970 MtrunA17_Chr8g0364291 37.539 317 189 3 14 323 10 324 1.46e-58 191
Msa0073970 MtrunA17_Chr2g0291751 37.459 307 181 4 25 323 27 330 3.43e-58 191
Msa0073970 MtrunA17_Chr2g0292181 37.461 323 190 6 10 324 22 340 3.63e-58 191
Msa0073970 MtrunA17_Chr2g0320091 32.177 317 206 5 11 323 7 318 8.10e-58 189
Msa0073970 MtrunA17_Chr4g0076211 37.209 301 173 6 29 323 43 333 1.25e-57 189
Msa0073970 MtrunA17_Chr3g0129061 33.654 312 203 3 13 323 14 322 2.40e-57 188
Msa0073970 MtrunA17_Chr4g0038151 32.166 314 211 2 11 323 9 321 2.49e-57 188
Msa0073970 MtrunA17_Chr6g0467161 33.438 320 196 6 14 323 24 336 3.43e-57 188
Msa0073970 MtrunA17_Chr2g0292151 34.727 311 192 4 21 323 23 330 6.90e-57 187
Msa0073970 MtrunA17_Chr4g0038171 33.229 319 201 5 11 323 9 321 1.66e-56 186
Msa0073970 MtrunA17_Chr1g0194151 34.516 310 188 5 25 323 28 333 3.40e-56 185
Msa0073970 MtrunA17_Chr8g0371381 35.974 303 181 5 26 323 25 319 7.35e-56 184
Msa0073970 MtrunA17_Chr2g0322861 35.385 325 197 6 8 323 66 386 1.03e-55 186
Msa0073970 MtrunA17_Chr3g0129041 33.974 312 202 3 13 323 14 322 2.73e-55 182
Msa0073970 MtrunA17_Chr5g0413051 33.766 308 196 5 24 323 70 377 2.91e-55 184
Msa0073970 MtrunA17_Chr4g0043391 32.915 319 202 5 11 323 12 324 3.14e-55 182
Msa0073970 MtrunA17_Chr2g0311251 33.434 332 186 6 25 322 9 339 3.40e-55 183
Msa0073970 MtrunA17_Chr6g0477071 33.003 303 193 4 22 323 49 342 4.16e-55 182
Msa0073970 MtrunA17_Chr7g0268501 34.579 321 196 5 11 323 6 320 7.30e-55 181
Msa0073970 MtrunA17_Chr7g0268521 34.579 321 196 5 11 323 6 320 7.30e-55 181
Msa0073970 MtrunA17_Chr1g0164891 34.098 305 190 5 28 323 90 392 1.27e-54 183
Msa0073970 MtrunA17_Chr2g0299691 35.526 304 182 7 31 324 60 359 1.60e-54 182
Msa0073970 MtrunA17_Chr4g0038161 32.166 314 210 3 11 323 9 320 5.01e-54 179
Msa0073970 MtrunA17_Chr7g0244451 32.692 312 204 3 13 323 10 316 6.01e-54 179
Msa0073970 MtrunA17_Chr2g0292261 34.568 324 200 6 10 325 13 332 6.07e-54 180
Msa0073970 MtrunA17_Chr2g0279041 32.416 327 202 6 9 323 6 325 7.32e-54 179
Msa0073970 MtrunA17_Chr2g0292111 34.084 311 194 4 21 323 23 330 7.61e-54 180
Msa0073970 MtrunA17_Chr4g0013821 32.899 307 192 6 25 324 26 325 1.29e-53 179
Msa0073970 MtrunA17_Chr4g0013721 33.443 305 191 5 25 323 98 396 2.23e-53 180
Msa0073970 MtrunA17_Chr2g0292101 33.746 323 199 6 12 325 12 328 2.44e-53 178
Msa0073970 MtrunA17_Chr6g0467251 33.108 296 188 5 27 319 36 324 3.02e-53 178
Msa0073970 MtrunA17_Chr4g0013191 34.653 303 189 5 25 323 43 340 4.17e-53 177
Msa0073970 MtrunA17_Chr2g0292091 32.704 318 201 5 16 325 15 327 8.10e-53 177
Msa0073970 MtrunA17_Chr4g0013171 35.625 320 196 6 9 323 7 321 8.11e-53 176
Msa0073970 MtrunA17_Chr5g0401431 35.202 321 196 5 11 322 11 328 1.07e-52 176
Msa0073970 MtrunA17_Chr4g0072091 34.551 301 186 5 26 319 23 319 2.12e-52 175
Msa0073970 MtrunA17_Chr1g0194271 33.438 317 189 5 25 323 28 340 2.74e-52 175
Msa0073970 MtrunA17_Chr5g0432351 35.077 325 195 8 11 325 5 323 2.83e-52 175
Msa0073970 MtrunA17_Chr1g0155611 37.377 305 180 4 27 323 46 347 5.58e-52 175
Msa0073970 MtrunA17_Chr3g0107881 31.988 322 205 7 11 323 8 324 6.32e-52 174
Msa0073970 MtrunA17_Chr1g0148021 33.837 331 191 7 13 323 6 328 7.40e-52 174
Msa0073970 MtrunA17_Chr3g0106901 33.841 328 203 4 1 323 5 323 9.75e-52 173
Msa0073970 MtrunA17_Chr2g0329641 32.248 307 197 4 24 323 33 335 1.39e-51 173
Msa0073970 MtrunA17_Chr4g0063671 32.000 325 196 6 13 323 7 320 1.88e-51 172
Msa0073970 MtrunA17_Chr5g0402571 33.022 321 205 6 9 323 10 326 4.84e-51 172
Msa0073970 MtrunA17_Chr2g0292271 32.308 325 209 4 9 325 11 332 4.94e-51 172
Msa0073970 MtrunA17_Chr4g0053871 34.615 312 197 4 12 319 12 320 5.49e-51 171
Msa0073970 MtrunA17_Chr2g0311241 29.491 373 187 6 25 322 58 429 7.09e-51 174
Msa0073970 MtrunA17_Chr4g0068621 32.566 304 197 4 25 323 36 336 1.79e-50 171
Msa0073970 MtrunA17_Chr1g0188431 31.987 297 194 3 27 323 39 327 2.73e-50 170
Msa0073970 MtrunA17_Chr7g0224371 31.132 318 207 5 13 324 12 323 5.37e-50 169
Msa0073970 MtrunA17_Chr1g0157051 31.646 316 204 4 12 322 9 317 7.00e-50 168
Msa0073970 MtrunA17_Chr5g0432331 34.314 306 187 7 25 323 54 352 1.60e-49 168
Msa0073970 MtrunA17_Chr5g0402581 31.988 322 207 6 9 323 10 326 3.05e-49 167
Msa0073970 MtrunA17_Chr4g0013181 35.690 297 183 5 30 323 62 353 4.51e-49 167
Msa0073970 MtrunA17_Chr5g0432341 34.426 305 188 7 25 323 23 321 5.77e-49 166
Msa0073970 MtrunA17_Chr3g0136751 32.087 321 204 5 11 323 8 322 2.05e-48 165
Msa0073970 MtrunA17_Chr2g0292291 32.278 316 194 6 21 323 24 332 9.40e-47 161
Msa0073970 MtrunA17_Chr5g0421411 32.130 277 176 5 58 324 12 286 6.17e-44 152
Msa0073970 MtrunA17_Chr2g0278671 32.063 315 187 7 24 323 21 323 1.63e-43 152
Msa0073970 MtrunA17_Chr2g0279061 32.319 263 162 5 70 323 11 266 1.93e-42 147
Msa0073970 MtrunA17_Chr2g0316811 36.842 228 118 4 25 228 48 273 1.94e-40 144
Msa0073970 MtrunA17_Chr5g0432401 28.213 319 176 7 11 322 13 285 1.58e-32 122
Msa0073970 MtrunA17_Chr4g0004591 25.157 318 177 4 27 322 77 355 2.40e-30 117
Msa0073970 MtrunA17_Chr2g0316141 29.433 282 155 7 74 324 12 280 2.21e-29 113
Msa0073970 MtrunA17_Chr2g0316181 29.433 282 155 7 74 324 12 280 2.21e-29 113
Msa0073970 MtrunA17_Chr2g0292281 31.925 213 125 4 119 324 18 217 8.62e-27 105
Msa0073970 MtrunA17_Chr3g0114461 33.333 189 120 3 136 323 9 192 7.13e-25 99.4
Msa0073970 MtrunA17_Chr3g0114491 40.179 112 66 1 23 133 14 125 1.05e-23 94.7
Msa0073970 MtrunA17_Chr7g0254181 36.957 138 83 2 89 225 22 156 6.17e-17 77.0
Msa0073970 MtrunA17_Chr6g0468731 43.662 71 37 1 66 136 22 89 9.84e-15 68.9
Msa0073970 MtrunA17_Chr7g0254171 28.244 131 94 0 70 200 1 131 8.20e-12 62.0
Msa0073970 MtrunA17_Chr3g0104101 30.769 143 88 4 191 324 10 150 9.13e-12 62.4
Msa0073970 MtrunA17_Chr5g0432321 29.508 122 80 2 147 268 17 132 4.84e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073970 AT2G37130.1 74.754 305 76 1 20 323 23 327 1.06e-175 489
Msa0073970 AT2G37130.2 76.014 296 70 1 29 323 1 296 2.81e-172 480
Msa0073970 AT4G21960.1 57.525 299 127 0 27 325 31 329 5.29e-134 384
Msa0073970 AT4G36430.1 39.130 322 184 5 10 324 15 331 3.56e-72 227
Msa0073970 AT1G34510.1 38.217 314 180 6 11 323 9 309 2.66e-71 224
Msa0073970 AT2G18150.1 39.414 307 176 4 24 323 33 336 6.74e-70 221
Msa0073970 AT3G03670.1 37.812 320 185 3 12 323 8 321 2.49e-69 219
Msa0073970 AT5G17820.1 37.342 316 181 5 13 323 10 313 4.42e-69 218
Msa0073970 AT5G66390.1 39.000 300 173 4 31 323 37 333 4.58e-69 219
Msa0073970 AT5G17820.2 37.658 316 180 5 13 323 63 366 7.76e-68 216
Msa0073970 AT3G50990.1 39.869 306 174 4 25 323 39 341 2.58e-67 214
Msa0073970 AT2G18140.1 37.821 312 184 4 19 323 27 335 4.96e-67 214
Msa0073970 AT4G08780.1 35.783 313 188 5 22 324 19 328 1.11e-65 210
Msa0073970 AT3G17070.1 35.061 328 196 7 10 323 15 339 4.10e-65 209
Msa0073970 AT4G26010.1 36.102 313 189 5 12 323 7 309 8.72e-65 207
Msa0073970 AT4G26010.2 36.392 316 183 6 9 323 39 337 1.90e-64 207
Msa0073970 AT5G40150.1 36.570 309 184 3 21 323 26 328 2.30e-64 206
Msa0073970 AT4G08770.1 35.016 317 193 5 18 324 15 328 9.30e-64 206
Msa0073970 AT5G14130.1 36.050 319 194 3 11 323 16 330 1.51e-63 204
Msa0073970 AT5G05340.1 35.738 305 190 4 21 323 24 324 2.31e-63 204
Msa0073970 AT5G14130.2 36.050 319 194 3 11 323 57 371 6.58e-63 204
Msa0073970 AT5G15180.1 36.228 334 197 7 1 323 1 329 1.36e-61 199
Msa0073970 AT3G32980.1 34.375 320 197 5 16 325 20 336 1.67e-61 200
Msa0073970 AT1G05260.1 33.841 328 200 6 10 324 3 326 3.02e-61 198
Msa0073970 AT1G71695.1 35.548 301 185 4 27 323 44 339 6.17e-61 199
Msa0073970 AT5G06730.1 32.544 338 211 6 1 324 1 335 1.24e-60 198
Msa0073970 AT4G17690.1 36.455 299 186 2 27 323 26 322 3.98e-60 196
Msa0073970 AT1G30870.1 37.255 306 174 6 27 324 51 346 6.48e-60 196
Msa0073970 AT2G39040.1 37.217 309 184 6 24 323 43 350 1.64e-59 194
Msa0073970 AT3G49120.1 33.750 320 199 5 16 325 21 337 1.77e-59 194
Msa0073970 AT5G06720.1 33.022 321 202 5 14 324 17 334 3.33e-59 193
Msa0073970 AT1G14550.1 35.404 322 197 6 9 323 4 321 6.70e-59 192
Msa0073970 AT1G24110.1 35.714 322 199 3 8 323 3 322 7.86e-59 192
Msa0073970 AT2G22420.1 34.591 318 195 6 12 323 9 319 1.24e-58 192
Msa0073970 AT4G31760.1 34.337 332 203 5 1 323 1 326 1.85e-58 191
Msa0073970 AT3G28200.1 34.853 307 187 4 23 323 17 316 1.01e-57 189
Msa0073970 AT5G64120.1 33.225 307 186 5 25 323 33 328 1.04e-57 189
Msa0073970 AT2G18980.1 33.639 327 205 4 4 323 2 323 1.99e-57 188
Msa0073970 AT2G35380.1 34.416 308 181 5 31 323 34 335 4.73e-57 188
Msa0073970 AT3G01190.1 35.952 331 194 9 1 323 1 321 7.68e-57 187
Msa0073970 AT4G33870.1 30.523 344 202 5 13 319 54 397 9.06e-57 189
Msa0073970 AT3G49110.1 32.812 320 202 5 16 325 22 338 1.20e-56 187
Msa0073970 AT2G34060.1 35.410 305 185 5 26 320 41 343 1.69e-56 187
Msa0073970 AT2G38390.1 33.123 317 200 5 16 323 20 333 1.75e-56 187
Msa0073970 AT4G16270.1 35.855 304 183 6 27 323 50 348 5.52e-56 186
Msa0073970 AT2G24800.1 33.660 306 191 4 25 323 29 329 1.39e-55 184
Msa0073970 AT5G47000.1 35.000 300 190 3 27 323 33 330 5.41e-55 182
Msa0073970 AT2G38380.1 33.123 317 200 5 16 323 20 333 6.60e-55 182
Msa0073970 AT1G14540.1 33.544 316 203 5 11 323 4 315 1.30e-54 181
Msa0073970 AT2G41480.1 34.347 329 194 10 9 323 8 328 1.42e-54 181
Msa0073970 AT5G58390.1 33.121 314 205 4 12 323 6 316 1.56e-54 181
Msa0073970 AT5G42180.1 33.438 317 197 5 12 322 8 316 2.92e-54 180
Msa0073970 AT1G49570.1 32.013 303 200 2 25 321 46 348 3.47e-54 181
Msa0073970 AT4G11290.1 32.615 325 200 7 12 323 8 326 5.07e-54 180
Msa0073970 AT3G21770.1 35.644 303 184 7 24 319 26 324 5.85e-54 179
Msa0073970 AT5G24070.1 33.657 309 191 5 26 325 34 337 7.55e-54 180
Msa0073970 AT1G44970.1 37.134 307 182 4 25 323 43 346 1.02e-53 179
Msa0073970 AT4G30170.1 33.660 306 191 5 25 323 25 325 1.96e-53 178
Msa0073970 AT5G58400.1 32.390 318 203 6 13 323 13 325 2.28e-53 178
Msa0073970 AT1G68850.1 33.117 308 195 6 27 324 30 336 3.10e-53 178
Msa0073970 AT4G33420.1 33.439 314 197 4 14 323 20 325 4.41e-53 177
Msa0073970 AT5G51890.1 33.022 321 202 6 9 323 9 322 4.84e-53 177
Msa0073970 AT4G37520.1 33.766 308 192 5 25 323 25 329 7.51e-53 177
Msa0073970 AT4G33420.2 33.439 314 197 4 14 323 67 372 2.22e-52 177
Msa0073970 AT1G05240.1 33.660 306 188 5 27 323 26 325 7.24e-52 174
Msa0073970 AT1G05250.1 33.660 306 188 5 27 323 26 325 7.24e-52 174
Msa0073970 AT4G37530.1 33.441 311 195 5 22 323 22 329 8.38e-52 174
Msa0073970 AT5G39580.1 32.704 318 200 7 11 323 11 319 1.42e-51 173
Msa0073970 AT4G37520.2 33.766 308 189 6 25 323 25 326 6.27e-51 172
Msa0073970 AT4G25980.1 32.288 319 200 7 15 323 14 326 1.76e-50 171
Msa0073970 AT5G19880.1 32.099 324 205 6 12 323 9 329 7.36e-50 169
Msa0073970 AT5G19890.1 33.117 308 191 6 24 323 27 327 7.49e-50 169
Msa0073970 AT5G22410.1 32.317 328 208 6 1 320 1 322 2.96e-49 167
Msa0073970 AT3G17070.2 36.047 258 154 6 74 323 22 276 4.19e-49 166
Msa0073970 AT5G67400.1 33.766 308 192 5 25 323 25 329 1.97e-48 165
Msa0073970 AT2G43480.1 31.922 307 195 5 26 323 34 335 6.69e-48 164
Msa0073970 AT3G49960.1 32.468 308 196 5 25 323 25 329 1.14e-47 163
Msa0073970 AT1G77100.1 33.645 321 197 11 12 323 6 319 2.33e-47 162
Msa0073970 AT4G37530.2 33.712 264 163 5 22 276 22 282 2.02e-43 151
Msa0073970 AT5G64110.1 31.579 304 192 6 28 323 35 330 2.38e-43 152
Msa0073970 AT2G35380.2 31.727 249 150 4 89 323 5 247 1.11e-39 140
Msa0073970 AT5G64100.1 28.525 305 198 6 28 323 38 331 4.10e-37 135
Msa0073970 AT4G25980.2 36.158 177 110 2 15 191 59 232 1.68e-33 125
Msa0073970 AT2G24800.2 34.132 167 107 1 25 191 29 192 3.96e-28 109
Msa0073970 AT5G39580.2 32.461 191 123 3 11 201 11 195 4.71e-28 109
Msa0073970 AT3G42570.1 35.714 98 58 2 97 191 52 147 1.40e-13 67.8

Find 80 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTAGTTATATGATTATT+TGG 0.150626 1_2:-48046499 Msa0073970:exon
TTGATGATCTCTTCTGCTTT+TGG 0.188067 1_2:+48047680 None:intergenic
CCTGTCTTCATTCCAAATTT+TGG 0.200548 1_2:+48047162 None:intergenic
CAACTACTACAAGAACATTT+TGG 0.233199 1_2:-48046715 Msa0073970:CDS
TTCACATAAGGTGATGTTCT+TGG 0.257639 1_2:+48046648 None:intergenic
AAGGGTACATTGCATGAATT+TGG 0.274410 1_2:-48046883 Msa0073970:CDS
ACATTTAAACTTGCAAAATA+TGG 0.277691 1_2:-48048060 Msa0073970:exon
CAAATAATCATATAACTAAT+TGG 0.281961 1_2:+48046500 None:intergenic
TTTCTCAACAGCAGCTTTGA+TGG 0.284452 1_2:+48047386 None:intergenic
TAGTTGGGAGGTCCAAAATT+TGG 0.287201 1_2:-48047174 Msa0073970:CDS
GCATATGTGGGGTCTAGCTT+TGG 0.306524 1_2:+48046834 None:intergenic
CAGACATCAGAGAGAAGTTC+CGG 0.336911 1_2:-48047435 Msa0073970:CDS
ACAGCATTTGGATCTGGATT+TGG 0.338871 1_2:+48046783 None:intergenic
CTTGCATATAGAACAGCATT+TGG 0.340382 1_2:+48046771 None:intergenic
TTGGATCTGGATTTGGTGTT+GGG 0.357857 1_2:+48046790 None:intergenic
ACGAGAAAGCACTAAGGATA+TGG 0.361019 1_2:+48047074 None:intergenic
TCAGAGAATAATCCTCTTAC+CGG 0.371092 1_2:-48046564 Msa0073970:CDS
TCTAGCTTTGGGTCCACTGT+GGG 0.394817 1_2:+48046846 None:intergenic
CATATGTGGGGTCTAGCTTT+GGG 0.402844 1_2:+48046835 None:intergenic
TCACCTTGATCTCCGGTAAG+AGG 0.408149 1_2:+48046552 None:intergenic
CTAAGGATATGGAGTCGTTA+TGG 0.420459 1_2:+48047085 None:intergenic
CCACTGTGGGGTATAGCCTC+TGG 0.422051 1_2:+48046859 None:intergenic
GATATGGAGTCGTTATGGTT+TGG 0.428624 1_2:+48047090 None:intergenic
TCTAATTTCACCTTGATCTC+CGG 0.439413 1_2:+48046545 None:intergenic
TATAGAACAGCATTTGGATC+TGG 0.452583 1_2:+48046777 None:intergenic
TTTGGATCTGGATTTGGTGT+TGG 0.455653 1_2:+48046789 None:intergenic
AGTAGTAGTTCATTTGTAGC+TGG 0.459722 1_2:+48047714 None:intergenic
ATGGAAACACGGCGGTTTCG+TGG 0.470766 1_2:-48047628 Msa0073970:CDS
AGACATCAGAGAGAAGTTCC+GGG 0.476089 1_2:-48047434 Msa0073970:CDS
TAGTTGTTGTCGATTATCAT+TGG 0.485138 1_2:+48046732 None:intergenic
AATCCTCTTACCGGAGATCA+AGG 0.499067 1_2:-48046555 Msa0073970:CDS
GTCGGTAGGCGATGTAGTAT+CGG 0.505099 1_2:-48047460 Msa0073970:CDS
AGAATAATTAATAATGCCAT+CGG 0.509700 1_2:-48046444 Msa0073970:three_prime_UTR
GTCTAGCTTTGGGTCCACTG+TGG 0.510662 1_2:+48046845 None:intergenic
TCACCTTGACTATGCAATCA+TGG 0.511245 1_2:+48047591 None:intergenic
TTTAGATAGGCAGCATATGT+GGG 0.512711 1_2:+48046822 None:intergenic
CGCCTACCGACTCTAAAAGC+AGG 0.513021 1_2:+48047472 None:intergenic
CCAAAATTTGGAATGAAGAC+AGG 0.516620 1_2:-48047162 Msa0073970:CDS
GTAGGAGAAGCAATAGAAAG+AGG 0.524679 1_2:+48048009 None:intergenic
ATTCTTCTACCATTGTTACA+TGG 0.531531 1_2:+48047118 None:intergenic
GAAATTAGAACGAGGCTTGG+TGG 0.536223 1_2:+48048037 None:intergenic
CGCTAGAGACGGAATTGCCA+TGG 0.536626 1_2:-48047319 Msa0073970:intron
GAATAATTAATAATGCCATC+GGG 0.544695 1_2:-48046443 Msa0073970:three_prime_UTR
AGATCAAGGTGAAATTAGAA+AGG 0.559276 1_2:-48046541 Msa0073970:CDS
CAGGAGGACACTCAGTGGGA+AGG 0.566579 1_2:-48046902 Msa0073970:CDS
ACTTCAATGAACAATTCTCA+AGG 0.567274 1_2:-48046602 Msa0073970:CDS
ATACTTGAAGTTTCGCATCC+CGG 0.570050 1_2:+48047416 None:intergenic
GTTGCTCTTTCCGCTAGAGA+CGG 0.576684 1_2:-48047330 Msa0073970:CDS
CTAGCTTTGGGTCCACTGTG+GGG 0.577225 1_2:+48046847 None:intergenic
AGGAGGACACTCAGTGGGAA+GGG 0.577554 1_2:-48046901 Msa0073970:CDS
GGCTTCAACGTCAACACCAA+TGG 0.577953 1_2:+48047044 None:intergenic
TGGAAACACGGCGGTTTCGT+GGG 0.579986 1_2:-48047627 Msa0073970:CDS
ATTGAACTGTATAACGAGCA+TGG 0.584782 1_2:-48047647 Msa0073970:CDS
ATGAAGACAGGACGAAGGGA+TGG 0.585661 1_2:-48047150 Msa0073970:CDS
CAAAGAAAGCCATGTAACAA+TGG 0.587531 1_2:-48047127 Msa0073970:CDS
ACAGAAATTAGAACGAGGCT+TGG 0.588243 1_2:+48048034 None:intergenic
CTTCCATGATTGCATAGTCA+AGG 0.595237 1_2:-48047594 Msa0073970:intron
GTCGGCACATGATACTGTCA+AGG 0.601258 1_2:+48047356 None:intergenic
GTTGCATTTGTATAGTTGGG+AGG 0.604309 1_2:-48047186 Msa0073970:intron
GTATAACGAGCATGGAAACA+CGG 0.609604 1_2:-48047639 Msa0073970:CDS
TTGGAATGAAGACAGGACGA+AGG 0.614577 1_2:-48047155 Msa0073970:CDS
TTGAAAACGAGAAAGCACTA+AGG 0.614872 1_2:+48047068 None:intergenic
GCCTACCGACTCTAAAAGCA+GGG 0.614896 1_2:+48047473 None:intergenic
CTTCAATGAACAATTCTCAA+GGG 0.615864 1_2:-48046601 Msa0073970:CDS
GTTCTTCATCCACAGTGAGT+AGG 0.617420 1_2:+48046682 None:intergenic
TGGAATGAAGACAGGACGAA+GGG 0.617875 1_2:-48047154 Msa0073970:CDS
CAATCAGGAGGACACTCAGT+GGG 0.618173 1_2:-48046906 Msa0073970:intron
ATTGCATGAATTTGGTCCAG+AGG 0.619021 1_2:-48046875 Msa0073970:CDS
CATGGCAATTCCGTCTCTAG+CGG 0.628811 1_2:+48047320 None:intergenic
GCATAAAAGTCTAAGCCCGA+TGG 0.642853 1_2:+48046428 None:intergenic
AGCGGAAAGAGCAACAATGT+CGG 0.649811 1_2:+48047338 None:intergenic
GTTACTTGATCAACCGACAA+AGG 0.652288 1_2:-48046379 Msa0073970:three_prime_UTR
TTAGATAGGCAGCATATGTG+GGG 0.658332 1_2:+48046823 None:intergenic
AGTACCTAAAAGAGCAACAG+TGG 0.675527 1_2:+48047023 None:intergenic
TCAATCAGGAGGACACTCAG+TGG 0.675558 1_2:-48046907 Msa0073970:intron
TCGGCACATGATACTGTCAA+GGG 0.683470 1_2:+48047357 None:intergenic
ACACAAGGGCCTACTCACTG+TGG 0.693288 1_2:-48046691 Msa0073970:CDS
AGGAAACAGAAATTAGAACG+AGG 0.744890 1_2:+48048029 None:intergenic
CCAGAGGCTATACCCCACAG+TGG 0.772742 1_2:-48046859 Msa0073970:CDS
TAACGAGCATGGAAACACGG+CGG 0.832552 1_2:-48047636 Msa0073970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAACAAAATTAAAATTAAAA+TGG + chr1_2:48046551-48046570 None:intergenic 10.0%
!! CAACAAAATTAAAATTAAAA+TGG + chr1_2:48046551-48046570 None:intergenic 10.0%
!!! GACCAATATTTATTTATTTT+TGG - chr1_2:48046416-48046435 Msa0073970:three_prime_UTR 15.0%
!! CACCAAAAATAAATAAATAT+TGG + chr1_2:48046421-48046440 None:intergenic 15.0%
!! TATATATAGGTCTTAAATAT+TGG + chr1_2:48046453-48046472 None:intergenic 15.0%
!! TAATGCATACTAATATATAT+AGG + chr1_2:48046466-48046485 None:intergenic 15.0%
!!! AATTGATAATGATATATATG+TGG - chr1_2:48046826-48046845 Msa0073970:CDS 15.0%
!!! ATTGATAATGATATATATGT+GGG - chr1_2:48046827-48046846 Msa0073970:CDS 15.0%
!! TTATAGAACATTGTAAATAT+TGG - chr1_2:48047121-48047140 Msa0073970:CDS 15.0%
!! TATAGAACATTGTAAATATT+GGG - chr1_2:48047122-48047141 Msa0073970:CDS 15.0%
!!! ATTCTAACATTTACTTTTTT+TGG - chr1_2:48047354-48047373 Msa0073970:CDS 15.0%
!! CAAACATAAACATAATTAAT+TGG - chr1_2:48047407-48047426 Msa0073970:CDS 15.0%
!! CAAATAATCATATAACTAAT+TGG + chr1_2:48047850-48047869 None:intergenic 15.0%
!! CAATTAGTTATATGATTATT+TGG - chr1_2:48047848-48047867 Msa0073970:intron 15.0%
!!! GACCAATATTTATTTATTTT+TGG - chr1_2:48046416-48046435 Msa0073970:three_prime_UTR 15.0%
!! CACCAAAAATAAATAAATAT+TGG + chr1_2:48046421-48046440 None:intergenic 15.0%
!! TATATATAGGTCTTAAATAT+TGG + chr1_2:48046453-48046472 None:intergenic 15.0%
!! TAATGCATACTAATATATAT+AGG + chr1_2:48046466-48046485 None:intergenic 15.0%
!!! AATTGATAATGATATATATG+TGG - chr1_2:48046826-48046845 Msa0073970:CDS 15.0%
!!! ATTGATAATGATATATATGT+GGG - chr1_2:48046827-48046846 Msa0073970:CDS 15.0%
!! TTATAGAACATTGTAAATAT+TGG - chr1_2:48047121-48047140 Msa0073970:CDS 15.0%
!! TATAGAACATTGTAAATATT+GGG - chr1_2:48047122-48047141 Msa0073970:CDS 15.0%
!!! ATTCTAACATTTACTTTTTT+TGG - chr1_2:48047354-48047373 Msa0073970:CDS 15.0%
!! CAAACATAAACATAATTAAT+TGG - chr1_2:48047407-48047426 Msa0073970:CDS 15.0%
!! CAAATAATCATATAACTAAT+TGG + chr1_2:48047850-48047869 None:intergenic 15.0%
!! CAATTAGTTATATGATTATT+TGG - chr1_2:48047848-48047867 Msa0073970:intron 15.0%
!! ACATTTAAACTTGCAAAATA+TGG - chr1_2:48046287-48046306 Msa0073970:three_prime_UTR 20.0%
!! AGAATAATTAATAATGCCAT+CGG - chr1_2:48047903-48047922 Msa0073970:intron 20.0%
!! ACATTTAAACTTGCAAAATA+TGG - chr1_2:48046287-48046306 Msa0073970:three_prime_UTR 20.0%
!! AGAATAATTAATAATGCCAT+CGG - chr1_2:48047903-48047922 Msa0073970:intron 20.0%
!!! CTTCTCCTACATTTTTATTT+GGG - chr1_2:48046351-48046370 Msa0073970:intron 25.0%
! ATGTACCCAAATAAAAATGT+AGG + chr1_2:48046359-48046378 None:intergenic 25.0%
! TTAATTAGAGAGGAGATTAA+TGG + chr1_2:48046582-48046601 None:intergenic 25.0%
! TTTCCTATGCAAAAAATACA+TGG + chr1_2:48046610-48046629 None:intergenic 25.0%
! GAATAATTAATAATGCCATC+GGG - chr1_2:48047904-48047923 Msa0073970:intron 25.0%
!! TTATTTTCTATTGCCTTTGT+CGG + chr1_2:48047984-48048003 None:intergenic 25.0%
!!! CTTCTCCTACATTTTTATTT+GGG - chr1_2:48046351-48046370 Msa0073970:intron 25.0%
! ATGTACCCAAATAAAAATGT+AGG + chr1_2:48046359-48046378 None:intergenic 25.0%
! TTAATTAGAGAGGAGATTAA+TGG + chr1_2:48046582-48046601 None:intergenic 25.0%
! TTTCCTATGCAAAAAATACA+TGG + chr1_2:48046610-48046629 None:intergenic 25.0%
! GAATAATTAATAATGCCATC+GGG - chr1_2:48047904-48047923 Msa0073970:intron 25.0%
!! TTATTTTCTATTGCCTTTGT+CGG + chr1_2:48047984-48048003 None:intergenic 25.0%
! GCTTCTCCTACATTTTTATT+TGG - chr1_2:48046350-48046369 Msa0073970:intron 30.0%
ATATTGGTCACACAAAAATG+AGG + chr1_2:48046405-48046424 None:intergenic 30.0%
CATGGCATTATTAATTAGAG+AGG + chr1_2:48046592-48046611 None:intergenic 30.0%
!!! ATGCCATGTATTTTTTGCAT+AGG - chr1_2:48046604-48046623 Msa0073970:CDS 30.0%
TGTTGTTGCATTTGTATAGT+TGG - chr1_2:48047157-48047176 Msa0073970:CDS 30.0%
GTTGTTGCATTTGTATAGTT+GGG - chr1_2:48047158-48047177 Msa0073970:CDS 30.0%
ATTCTTCTACCATTGTTACA+TGG + chr1_2:48047232-48047251 None:intergenic 30.0%
! TAGTTGTTGTCGATTATCAT+TGG + chr1_2:48047618-48047637 None:intergenic 30.0%
! CAACTACTACAAGAACATTT+TGG - chr1_2:48047632-48047651 Msa0073970:CDS 30.0%
!!! AAGAACATTTTGGAACACAA+GGG - chr1_2:48047642-48047661 Msa0073970:CDS 30.0%
ATCACCTTATGTGAAAAAGA+TGG - chr1_2:48047707-48047726 Msa0073970:CDS 30.0%
ACTTCAATGAACAATTCTCA+AGG - chr1_2:48047745-48047764 Msa0073970:intron 30.0%
CTTCAATGAACAATTCTCAA+GGG - chr1_2:48047746-48047765 Msa0073970:intron 30.0%
AGATCAAGGTGAAATTAGAA+AGG - chr1_2:48047806-48047825 Msa0073970:intron 30.0%
AATACACTCACAAACTTCAA+AGG + chr1_2:48048011-48048030 None:intergenic 30.0%
! GCTTCTCCTACATTTTTATT+TGG - chr1_2:48046350-48046369 Msa0073970:intron 30.0%
ATATTGGTCACACAAAAATG+AGG + chr1_2:48046405-48046424 None:intergenic 30.0%
CATGGCATTATTAATTAGAG+AGG + chr1_2:48046592-48046611 None:intergenic 30.0%
!!! ATGCCATGTATTTTTTGCAT+AGG - chr1_2:48046604-48046623 Msa0073970:CDS 30.0%
TGTTGTTGCATTTGTATAGT+TGG - chr1_2:48047157-48047176 Msa0073970:CDS 30.0%
GTTGTTGCATTTGTATAGTT+GGG - chr1_2:48047158-48047177 Msa0073970:CDS 30.0%
ATTCTTCTACCATTGTTACA+TGG + chr1_2:48047232-48047251 None:intergenic 30.0%
! TAGTTGTTGTCGATTATCAT+TGG + chr1_2:48047618-48047637 None:intergenic 30.0%
! CAACTACTACAAGAACATTT+TGG - chr1_2:48047632-48047651 Msa0073970:CDS 30.0%
!!! AAGAACATTTTGGAACACAA+GGG - chr1_2:48047642-48047661 Msa0073970:CDS 30.0%
ATCACCTTATGTGAAAAAGA+TGG - chr1_2:48047707-48047726 Msa0073970:CDS 30.0%
ACTTCAATGAACAATTCTCA+AGG - chr1_2:48047745-48047764 Msa0073970:intron 30.0%
CTTCAATGAACAATTCTCAA+GGG - chr1_2:48047746-48047765 Msa0073970:intron 30.0%
AGATCAAGGTGAAATTAGAA+AGG - chr1_2:48047806-48047825 Msa0073970:intron 30.0%
AATACACTCACAAACTTCAA+AGG + chr1_2:48048011-48048030 None:intergenic 30.0%
AGGAAACAGAAATTAGAACG+AGG + chr1_2:48046321-48046340 None:intergenic 35.0%
AGGTCTTAAATATTGGTCAC+AGG + chr1_2:48046446-48046465 None:intergenic 35.0%
AGTAGTAGTTCATTTGTAGC+TGG + chr1_2:48046636-48046655 None:intergenic 35.0%
!! TGATGATCTCTTCTGCTTTT+GGG + chr1_2:48046669-48046688 None:intergenic 35.0%
!! TTGATGATCTCTTCTGCTTT+TGG + chr1_2:48046670-48046689 None:intergenic 35.0%
ATTGAACTGTATAACGAGCA+TGG - chr1_2:48046700-48046719 Msa0073970:CDS 35.0%
! CCTGTCTTCATTCCAAATTT+TGG + chr1_2:48047188-48047207 None:intergenic 35.0%
! CCAAAATTTGGAATGAAGAC+AGG - chr1_2:48047185-48047204 Msa0073970:intron 35.0%
CAAAGAAAGCCATGTAACAA+TGG - chr1_2:48047220-48047239 Msa0073970:intron 35.0%
!! TTGAAAACGAGAAAGCACTA+AGG + chr1_2:48047282-48047301 None:intergenic 35.0%
! TTGGTCACTTTGATTCAATC+AGG - chr1_2:48047426-48047445 Msa0073970:CDS 35.0%
! AAGGGTACATTGCATGAATT+TGG - chr1_2:48047464-48047483 Msa0073970:CDS 35.0%
TTTAGATAGGCAGCATATGT+GGG + chr1_2:48047528-48047547 None:intergenic 35.0%
! TTTTAGATAGGCAGCATATG+TGG + chr1_2:48047529-48047548 None:intergenic 35.0%
!!! TGGGCATCTAAGTTTTAGAT+AGG + chr1_2:48047541-48047560 None:intergenic 35.0%
TATAGAACAGCATTTGGATC+TGG + chr1_2:48047573-48047592 None:intergenic 35.0%
CTTGCATATAGAACAGCATT+TGG + chr1_2:48047579-48047598 None:intergenic 35.0%
!!! CAAGAACATTTTGGAACACA+AGG - chr1_2:48047641-48047660 Msa0073970:CDS 35.0%
TTCACATAAGGTGATGTTCT+TGG + chr1_2:48047702-48047721 None:intergenic 35.0%
AAAAAGATGGCAGCTGATAA+TGG - chr1_2:48047720-48047739 Msa0073970:CDS 35.0%
TCAGAGAATAATCCTCTTAC+CGG - chr1_2:48047783-48047802 Msa0073970:intron 35.0%
TCTAATTTCACCTTGATCTC+CGG + chr1_2:48047805-48047824 None:intergenic 35.0%
AGGAAACAGAAATTAGAACG+AGG + chr1_2:48046321-48046340 None:intergenic 35.0%
AGGTCTTAAATATTGGTCAC+AGG + chr1_2:48046446-48046465 None:intergenic 35.0%
AGTAGTAGTTCATTTGTAGC+TGG + chr1_2:48046636-48046655 None:intergenic 35.0%
!! TGATGATCTCTTCTGCTTTT+GGG + chr1_2:48046669-48046688 None:intergenic 35.0%
!! TTGATGATCTCTTCTGCTTT+TGG + chr1_2:48046670-48046689 None:intergenic 35.0%
ATTGAACTGTATAACGAGCA+TGG - chr1_2:48046700-48046719 Msa0073970:CDS 35.0%
! CCTGTCTTCATTCCAAATTT+TGG + chr1_2:48047188-48047207 None:intergenic 35.0%
! CCAAAATTTGGAATGAAGAC+AGG - chr1_2:48047185-48047204 Msa0073970:intron 35.0%
CAAAGAAAGCCATGTAACAA+TGG - chr1_2:48047220-48047239 Msa0073970:intron 35.0%
!! TTGAAAACGAGAAAGCACTA+AGG + chr1_2:48047282-48047301 None:intergenic 35.0%
! TTGGTCACTTTGATTCAATC+AGG - chr1_2:48047426-48047445 Msa0073970:CDS 35.0%
! AAGGGTACATTGCATGAATT+TGG - chr1_2:48047464-48047483 Msa0073970:CDS 35.0%
TTTAGATAGGCAGCATATGT+GGG + chr1_2:48047528-48047547 None:intergenic 35.0%
! TTTTAGATAGGCAGCATATG+TGG + chr1_2:48047529-48047548 None:intergenic 35.0%
!!! TGGGCATCTAAGTTTTAGAT+AGG + chr1_2:48047541-48047560 None:intergenic 35.0%
TATAGAACAGCATTTGGATC+TGG + chr1_2:48047573-48047592 None:intergenic 35.0%
CTTGCATATAGAACAGCATT+TGG + chr1_2:48047579-48047598 None:intergenic 35.0%
!!! CAAGAACATTTTGGAACACA+AGG - chr1_2:48047641-48047660 Msa0073970:CDS 35.0%
TTCACATAAGGTGATGTTCT+TGG + chr1_2:48047702-48047721 None:intergenic 35.0%
AAAAAGATGGCAGCTGATAA+TGG - chr1_2:48047720-48047739 Msa0073970:CDS 35.0%
TCAGAGAATAATCCTCTTAC+CGG - chr1_2:48047783-48047802 Msa0073970:intron 35.0%
TCTAATTTCACCTTGATCTC+CGG + chr1_2:48047805-48047824 None:intergenic 35.0%
ACAGAAATTAGAACGAGGCT+TGG + chr1_2:48046316-48046335 None:intergenic 40.0%
GTAGGAGAAGCAATAGAAAG+AGG + chr1_2:48046341-48046360 None:intergenic 40.0%
GTATAACGAGCATGGAAACA+CGG - chr1_2:48046708-48046727 Msa0073970:CDS 40.0%
CTTCCATGATTGCATAGTCA+AGG - chr1_2:48046753-48046772 Msa0073970:CDS 40.0%
TCACCTTGACTATGCAATCA+TGG + chr1_2:48046759-48046778 None:intergenic 40.0%
! CGCAGCAGAGTTATCATTTT+TGG - chr1_2:48046792-48046811 Msa0073970:CDS 40.0%
ATACTTGAAGTTTCGCATCC+CGG + chr1_2:48046934-48046953 None:intergenic 40.0%
! TTTCTCAACAGCAGCTTTGA+TGG + chr1_2:48046964-48046983 None:intergenic 40.0%
GTTGCATTTGTATAGTTGGG+AGG - chr1_2:48047161-48047180 Msa0073970:CDS 40.0%
TAGTTGGGAGGTCCAAAATT+TGG - chr1_2:48047173-48047192 Msa0073970:CDS 40.0%
GATATGGAGTCGTTATGGTT+TGG + chr1_2:48047260-48047279 None:intergenic 40.0%
CTAAGGATATGGAGTCGTTA+TGG + chr1_2:48047265-48047284 None:intergenic 40.0%
!! ACGAGAAAGCACTAAGGATA+TGG + chr1_2:48047276-48047295 None:intergenic 40.0%
!! CTTTCTCGTTTTCAAGCCAT+TGG - chr1_2:48047287-48047306 Msa0073970:intron 40.0%
AGTACCTAAAAGAGCAACAG+TGG + chr1_2:48047327-48047346 None:intergenic 40.0%
! GTCACTTTGATTCAATCAGG+AGG - chr1_2:48047429-48047448 Msa0073970:CDS 40.0%
ATTGCATGAATTTGGTCCAG+AGG - chr1_2:48047472-48047491 Msa0073970:CDS 40.0%
TTAGATAGGCAGCATATGTG+GGG + chr1_2:48047527-48047546 None:intergenic 40.0%
!! TTGGATCTGGATTTGGTGTT+GGG + chr1_2:48047560-48047579 None:intergenic 40.0%
!! TTTGGATCTGGATTTGGTGT+TGG + chr1_2:48047561-48047580 None:intergenic 40.0%
ACAGCATTTGGATCTGGATT+TGG + chr1_2:48047567-48047586 None:intergenic 40.0%
!! GCTGCCATCTTTTTCACATA+AGG + chr1_2:48047714-48047733 None:intergenic 40.0%
GTTACTTGATCAACCGACAA+AGG - chr1_2:48047968-48047987 Msa0073970:intron 40.0%
ACAGAAATTAGAACGAGGCT+TGG + chr1_2:48046316-48046335 None:intergenic 40.0%
GTAGGAGAAGCAATAGAAAG+AGG + chr1_2:48046341-48046360 None:intergenic 40.0%
GTATAACGAGCATGGAAACA+CGG - chr1_2:48046708-48046727 Msa0073970:CDS 40.0%
CTTCCATGATTGCATAGTCA+AGG - chr1_2:48046753-48046772 Msa0073970:CDS 40.0%
TCACCTTGACTATGCAATCA+TGG + chr1_2:48046759-48046778 None:intergenic 40.0%
! CGCAGCAGAGTTATCATTTT+TGG - chr1_2:48046792-48046811 Msa0073970:CDS 40.0%
ATACTTGAAGTTTCGCATCC+CGG + chr1_2:48046934-48046953 None:intergenic 40.0%
! TTTCTCAACAGCAGCTTTGA+TGG + chr1_2:48046964-48046983 None:intergenic 40.0%
GTTGCATTTGTATAGTTGGG+AGG - chr1_2:48047161-48047180 Msa0073970:CDS 40.0%
TAGTTGGGAGGTCCAAAATT+TGG - chr1_2:48047173-48047192 Msa0073970:CDS 40.0%
GATATGGAGTCGTTATGGTT+TGG + chr1_2:48047260-48047279 None:intergenic 40.0%
CTAAGGATATGGAGTCGTTA+TGG + chr1_2:48047265-48047284 None:intergenic 40.0%
!! ACGAGAAAGCACTAAGGATA+TGG + chr1_2:48047276-48047295 None:intergenic 40.0%
!! CTTTCTCGTTTTCAAGCCAT+TGG - chr1_2:48047287-48047306 Msa0073970:intron 40.0%
AGTACCTAAAAGAGCAACAG+TGG + chr1_2:48047327-48047346 None:intergenic 40.0%
! GTCACTTTGATTCAATCAGG+AGG - chr1_2:48047429-48047448 Msa0073970:CDS 40.0%
ATTGCATGAATTTGGTCCAG+AGG - chr1_2:48047472-48047491 Msa0073970:CDS 40.0%
TTAGATAGGCAGCATATGTG+GGG + chr1_2:48047527-48047546 None:intergenic 40.0%
!! TTGGATCTGGATTTGGTGTT+GGG + chr1_2:48047560-48047579 None:intergenic 40.0%
!! TTTGGATCTGGATTTGGTGT+TGG + chr1_2:48047561-48047580 None:intergenic 40.0%
ACAGCATTTGGATCTGGATT+TGG + chr1_2:48047567-48047586 None:intergenic 40.0%
!! GCTGCCATCTTTTTCACATA+AGG + chr1_2:48047714-48047733 None:intergenic 40.0%
GTTACTTGATCAACCGACAA+AGG - chr1_2:48047968-48047987 Msa0073970:intron 40.0%
GAAATTAGAACGAGGCTTGG+TGG + chr1_2:48046313-48046332 None:intergenic 45.0%
!! TTCTGCTTTTGGGCAGCTTT+TGG + chr1_2:48046659-48046678 None:intergenic 45.0%
CAGACATCAGAGAGAAGTTC+CGG - chr1_2:48046912-48046931 Msa0073970:intron 45.0%
AGACATCAGAGAGAAGTTCC+GGG - chr1_2:48046913-48046932 Msa0073970:intron 45.0%
TCGGCACATGATACTGTCAA+GGG + chr1_2:48046993-48047012 None:intergenic 45.0%
AGCGGAAAGAGCAACAATGT+CGG + chr1_2:48047012-48047031 None:intergenic 45.0%
GTGCGACTCTTAACATACCA+TGG + chr1_2:48047048-48047067 None:intergenic 45.0%
TTGGAATGAAGACAGGACGA+AGG - chr1_2:48047192-48047211 Msa0073970:intron 45.0%
TGGAATGAAGACAGGACGAA+GGG - chr1_2:48047193-48047212 Msa0073970:intron 45.0%
! GAAGCCACTGTTGCTCTTTT+AGG - chr1_2:48047320-48047339 Msa0073970:CDS 45.0%
!! CATATGTGGGGTCTAGCTTT+GGG + chr1_2:48047515-48047534 None:intergenic 45.0%
GTTCTTCATCCACAGTGAGT+AGG + chr1_2:48047668-48047687 None:intergenic 45.0%
AATCCTCTTACCGGAGATCA+AGG - chr1_2:48047792-48047811 Msa0073970:intron 45.0%
GCATAAAAGTCTAAGCCCGA+TGG + chr1_2:48047922-48047941 None:intergenic 45.0%
GAAATTAGAACGAGGCTTGG+TGG + chr1_2:48046313-48046332 None:intergenic 45.0%
!! TTCTGCTTTTGGGCAGCTTT+TGG + chr1_2:48046659-48046678 None:intergenic 45.0%
CAGACATCAGAGAGAAGTTC+CGG - chr1_2:48046912-48046931 Msa0073970:intron 45.0%
AGACATCAGAGAGAAGTTCC+GGG - chr1_2:48046913-48046932 Msa0073970:intron 45.0%
TCGGCACATGATACTGTCAA+GGG + chr1_2:48046993-48047012 None:intergenic 45.0%
AGCGGAAAGAGCAACAATGT+CGG + chr1_2:48047012-48047031 None:intergenic 45.0%
GTGCGACTCTTAACATACCA+TGG + chr1_2:48047048-48047067 None:intergenic 45.0%
TTGGAATGAAGACAGGACGA+AGG - chr1_2:48047192-48047211 Msa0073970:intron 45.0%
TGGAATGAAGACAGGACGAA+GGG - chr1_2:48047193-48047212 Msa0073970:intron 45.0%
! GAAGCCACTGTTGCTCTTTT+AGG - chr1_2:48047320-48047339 Msa0073970:CDS 45.0%
!! CATATGTGGGGTCTAGCTTT+GGG + chr1_2:48047515-48047534 None:intergenic 45.0%
GTTCTTCATCCACAGTGAGT+AGG + chr1_2:48047668-48047687 None:intergenic 45.0%
AATCCTCTTACCGGAGATCA+AGG - chr1_2:48047792-48047811 Msa0073970:intron 45.0%
GCATAAAAGTCTAAGCCCGA+TGG + chr1_2:48047922-48047941 None:intergenic 45.0%
TAACGAGCATGGAAACACGG+CGG - chr1_2:48046711-48046730 Msa0073970:CDS 50.0%
!!! CGCATCCCTGCTTTTAGAGT+CGG - chr1_2:48046869-48046888 Msa0073970:CDS 50.0%
!!! TCCCTGCTTTTAGAGTCGGT+AGG - chr1_2:48046873-48046892 Msa0073970:CDS 50.0%
!! GCCTACCGACTCTAAAAGCA+GGG + chr1_2:48046877-48046896 None:intergenic 50.0%
GTCGGTAGGCGATGTAGTAT+CGG - chr1_2:48046887-48046906 Msa0073970:CDS 50.0%
GTCGGCACATGATACTGTCA+AGG + chr1_2:48046994-48047013 None:intergenic 50.0%
GTTGCTCTTTCCGCTAGAGA+CGG - chr1_2:48047017-48047036 Msa0073970:intron 50.0%
CATGGCAATTCCGTCTCTAG+CGG + chr1_2:48047030-48047049 None:intergenic 50.0%
ATGAAGACAGGACGAAGGGA+TGG - chr1_2:48047197-48047216 Msa0073970:intron 50.0%
GGCTTCAACGTCAACACCAA+TGG + chr1_2:48047306-48047325 None:intergenic 50.0%
TCAATCAGGAGGACACTCAG+TGG - chr1_2:48047440-48047459 Msa0073970:CDS 50.0%
CAATCAGGAGGACACTCAGT+GGG - chr1_2:48047441-48047460 Msa0073970:CDS 50.0%
!! TCTAGCTTTGGGTCCACTGT+GGG + chr1_2:48047504-48047523 None:intergenic 50.0%
! GCATATGTGGGGTCTAGCTT+TGG + chr1_2:48047516-48047535 None:intergenic 50.0%
TCACCTTGATCTCCGGTAAG+AGG + chr1_2:48047798-48047817 None:intergenic 50.0%
TAACGAGCATGGAAACACGG+CGG - chr1_2:48046711-48046730 Msa0073970:CDS 50.0%
!!! CGCATCCCTGCTTTTAGAGT+CGG - chr1_2:48046869-48046888 Msa0073970:CDS 50.0%
!!! TCCCTGCTTTTAGAGTCGGT+AGG - chr1_2:48046873-48046892 Msa0073970:CDS 50.0%
!! GCCTACCGACTCTAAAAGCA+GGG + chr1_2:48046877-48046896 None:intergenic 50.0%
GTCGGTAGGCGATGTAGTAT+CGG - chr1_2:48046887-48046906 Msa0073970:CDS 50.0%
GTCGGCACATGATACTGTCA+AGG + chr1_2:48046994-48047013 None:intergenic 50.0%
GTTGCTCTTTCCGCTAGAGA+CGG - chr1_2:48047017-48047036 Msa0073970:intron 50.0%
CATGGCAATTCCGTCTCTAG+CGG + chr1_2:48047030-48047049 None:intergenic 50.0%
ATGAAGACAGGACGAAGGGA+TGG - chr1_2:48047197-48047216 Msa0073970:intron 50.0%
GGCTTCAACGTCAACACCAA+TGG + chr1_2:48047306-48047325 None:intergenic 50.0%
TCAATCAGGAGGACACTCAG+TGG - chr1_2:48047440-48047459 Msa0073970:CDS 50.0%
CAATCAGGAGGACACTCAGT+GGG - chr1_2:48047441-48047460 Msa0073970:CDS 50.0%
!! TCTAGCTTTGGGTCCACTGT+GGG + chr1_2:48047504-48047523 None:intergenic 50.0%
! GCATATGTGGGGTCTAGCTT+TGG + chr1_2:48047516-48047535 None:intergenic 50.0%
TCACCTTGATCTCCGGTAAG+AGG + chr1_2:48047798-48047817 None:intergenic 50.0%
ATGGAAACACGGCGGTTTCG+TGG - chr1_2:48046719-48046738 Msa0073970:CDS 55.0%
TGGAAACACGGCGGTTTCGT+GGG - chr1_2:48046720-48046739 Msa0073970:CDS 55.0%
!! CGCCTACCGACTCTAAAAGC+AGG + chr1_2:48046878-48046897 None:intergenic 55.0%
CGCTAGAGACGGAATTGCCA+TGG - chr1_2:48047028-48047047 Msa0073970:CDS 55.0%
AGGAGGACACTCAGTGGGAA+GGG - chr1_2:48047446-48047465 Msa0073970:CDS 55.0%
!! CTAGCTTTGGGTCCACTGTG+GGG + chr1_2:48047503-48047522 None:intergenic 55.0%
!! GTCTAGCTTTGGGTCCACTG+TGG + chr1_2:48047505-48047524 None:intergenic 55.0%
ACACAAGGGCCTACTCACTG+TGG - chr1_2:48047656-48047675 Msa0073970:CDS 55.0%
ATGGAAACACGGCGGTTTCG+TGG - chr1_2:48046719-48046738 Msa0073970:CDS 55.0%
TGGAAACACGGCGGTTTCGT+GGG - chr1_2:48046720-48046739 Msa0073970:CDS 55.0%
!! CGCCTACCGACTCTAAAAGC+AGG + chr1_2:48046878-48046897 None:intergenic 55.0%
CGCTAGAGACGGAATTGCCA+TGG - chr1_2:48047028-48047047 Msa0073970:CDS 55.0%
AGGAGGACACTCAGTGGGAA+GGG - chr1_2:48047446-48047465 Msa0073970:CDS 55.0%
!! CTAGCTTTGGGTCCACTGTG+GGG + chr1_2:48047503-48047522 None:intergenic 55.0%
!! GTCTAGCTTTGGGTCCACTG+TGG + chr1_2:48047505-48047524 None:intergenic 55.0%
ACACAAGGGCCTACTCACTG+TGG - chr1_2:48047656-48047675 Msa0073970:CDS 55.0%
CAGGAGGACACTCAGTGGGA+AGG - chr1_2:48047445-48047464 Msa0073970:CDS 60.0%
CCACTGTGGGGTATAGCCTC+TGG + chr1_2:48047491-48047510 None:intergenic 60.0%
CCAGAGGCTATACCCCACAG+TGG - chr1_2:48047488-48047507 Msa0073970:CDS 60.0%
CAGGAGGACACTCAGTGGGA+AGG - chr1_2:48047445-48047464 Msa0073970:CDS 60.0%
CCACTGTGGGGTATAGCCTC+TGG + chr1_2:48047491-48047510 None:intergenic 60.0%
CCAGAGGCTATACCCCACAG+TGG - chr1_2:48047488-48047507 Msa0073970:CDS 60.0%
GGATGCGTCGCATGACTGCG+TGG + chr1_2:48046856-48046875 None:intergenic 65.0%
GGATGCGTCGCATGACTGCG+TGG + chr1_2:48046856-48046875 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48046278 48048091 48046278 ID=Msa0073970;Name=Msa0073970
chr1_2 mRNA 48046278 48048091 48046278 ID=Msa0073970-mRNA-1;Parent=Msa0073970;Name=Msa0073970-mRNA-1;_AED=0.30;_eAED=0.30;_QI=28|1|1|1|0.6|0.33|6|213|325
chr1_2 exon 48046278 48046352 48046278 ID=Msa0073970-mRNA-1:exon:14613;Parent=Msa0073970-mRNA-1
chr1_2 exon 48046377 48046921 48046377 ID=Msa0073970-mRNA-1:exon:14612;Parent=Msa0073970-mRNA-1
chr1_2 exon 48047028 48047193 48047028 ID=Msa0073970-mRNA-1:exon:14611;Parent=Msa0073970-mRNA-1
chr1_2 exon 48047320 48047508 48047320 ID=Msa0073970-mRNA-1:exon:14610;Parent=Msa0073970-mRNA-1
chr1_2 exon 48047595 48047743 48047595 ID=Msa0073970-mRNA-1:exon:14609;Parent=Msa0073970-mRNA-1
chr1_2 exon 48047997 48048091 48047997 ID=Msa0073970-mRNA-1:exon:14608;Parent=Msa0073970-mRNA-1
chr1_2 five_prime_UTR 48048064 48048091 48048064 ID=Msa0073970-mRNA-1:five_prime_utr;Parent=Msa0073970-mRNA-1
chr1_2 CDS 48047997 48048063 48047997 ID=Msa0073970-mRNA-1:cds;Parent=Msa0073970-mRNA-1
chr1_2 CDS 48047595 48047743 48047595 ID=Msa0073970-mRNA-1:cds;Parent=Msa0073970-mRNA-1
chr1_2 CDS 48047320 48047508 48047320 ID=Msa0073970-mRNA-1:cds;Parent=Msa0073970-mRNA-1
chr1_2 CDS 48047028 48047193 48047028 ID=Msa0073970-mRNA-1:cds;Parent=Msa0073970-mRNA-1
chr1_2 CDS 48046515 48046921 48046515 ID=Msa0073970-mRNA-1:cds;Parent=Msa0073970-mRNA-1
chr1_2 three_prime_UTR 48046377 48046514 48046377 ID=Msa0073970-mRNA-1:three_prime_utr;Parent=Msa0073970-mRNA-1
chr1_2 three_prime_UTR 48046278 48046352 48046278 ID=Msa0073970-mRNA-1:three_prime_utr;Parent=Msa0073970-mRNA-1
Gene Sequence

>Msa0073970

ATGGCCACCAAGCCTCGTTCTAATTTCTGTTTCCTCTTTCTATTGCTTCTCCTACATTTTTATTTGGGAAAAAGCCAGCTACAAATGAACTACTACTCCAAAAGCTGCCCAAAAGCAGAAGAGATCATCAAACAAAAAGTCATTGAACTGTATAACGAGCATGGAAACACGGCGGTTTCGTGGGTTAGAAATCTCTTCCATGATTGCATAGTCAAGTCATGCGACGCATCCCTGCTTTTAGAGTCGGTAGGCGATGTAGTATCGGAGCAGACATCAGAGAGAAGTTCCGGGATGCGAAACTTCAAGTATGTGAAAACCATCAAAGCTGCTGTTGAGAAAGAATGTCCCTTGACAGTATCATGTGCCGACATTGTTGCTCTTTCCGCTAGAGACGGAATTGCCATGTTGGGAGGTCCAAAATTTGGAATGAAGACAGGACGAAGGGATGGCAAAGAAAGCCATGTAACAATGGTAGAAGAATTCATTCCAAACCATAACGACTCCATATCCTTAGTGCTTTCTCGTTTTCAAGCCATTGGTGTTGACGTTGAAGCCACTGTTGCTCTTTTAGGAGGACACTCAGTGGGAAGGGTACATTGCATGAATTTGGTCCAGAGGCTATACCCCACAGTGGACCCAAAGCTAGACCCCACATATGCTGCCTATCTAAAACTTAGATGCCCAACACCAAATCCAGATCCAAATGCTGTTCTATATGCAAGAAATGATAGAAAAACGCCAATGATAATCGACAACAACTACTACAAGAACATTTTGGAACACAAGGGCCTACTCACTGTGGATGAAGAACTAGCTACTGATCCAAGAACATCACCTTATGTGAAAAAGATGGCAGCTGATAATGGATACTTCAATGAACAATTCTCAAGGGCTGTTCAATTGTTATCAGAGAATAATCCTCTTACCGGAGATCAAGGTGAAATTAGAAAGGATTGTCGTTACGTTAATGCCAATTAG
Protein sequence

>Msa0073970

MATKPRSNFCFLFLLLLLHFYLGKSQLQMNYYSKSCPKAEEIIKQKVIELYNEHGNTAVSWVRNLFHDCIVKSCDASLLLESVGDVVSEQTSERSSGMRNFKYVKTIKAAVEKECPLTVSCADIVALSARDGIAMLGGPKFGMKTGRRDGKESHVTMVEEFIPNHNDSISLVLSRFQAIGVDVEATVALLGGHSVGRVHCMNLVQRLYPTVDPKLDPTYAAYLKLRCPTPNPDPNAVLYARNDRKTPMIIDNNYYKNILEHKGLLTVDEELATDPRTSPYVKKMAADNGYFNEQFSRAVQLLSENNPLTGDQGEIRKDCRYVNAN*