AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1042340


Find 304 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr7_1 gene 80252081 80259624 80252081 ID=Msa1042340;Name=Msa1042340
chr7_1 mRNA 80252081 80259624 80252081 ID=Msa1042340-mRNA-1;Parent=Msa1042340;Name=Msa1042340-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.15|0.15|0.95|1|1|20|21|1457
chr7_1 exon 80252081 80252457 80252081 ID=Msa1042340-mRNA-1:exon:21804;Parent=Msa1042340-mRNA-1
chr7_1 exon 80252948 80253068 80252948 ID=Msa1042340-mRNA-1:exon:21805;Parent=Msa1042340-mRNA-1
chr7_1 exon 80253139 80253227 80253139 ID=Msa1042340-mRNA-1:exon:21806;Parent=Msa1042340-mRNA-1
chr7_1 exon 80253336 80253420 80253336 ID=Msa1042340-mRNA-1:exon:21807;Parent=Msa1042340-mRNA-1
chr7_1 exon 80253590 80253880 80253590 ID=Msa1042340-mRNA-1:exon:21808;Parent=Msa1042340-mRNA-1
chr7_1 exon 80254125 80254215 80254125 ID=Msa1042340-mRNA-1:exon:21809;Parent=Msa1042340-mRNA-1
chr7_1 exon 80254313 80255213 80254313 ID=Msa1042340-mRNA-1:exon:21810;Parent=Msa1042340-mRNA-1
chr7_1 exon 80255417 80255577 80255417 ID=Msa1042340-mRNA-1:exon:21811;Parent=Msa1042340-mRNA-1
chr7_1 exon 80255705 80255808 80255705 ID=Msa1042340-mRNA-1:exon:21812;Parent=Msa1042340-mRNA-1
chr7_1 exon 80255964 80256129 80255964 ID=Msa1042340-mRNA-1:exon:21813;Parent=Msa1042340-mRNA-1
chr7_1 exon 80256219 80256302 80256219 ID=Msa1042340-mRNA-1:exon:21814;Parent=Msa1042340-mRNA-1
chr7_1 exon 80256562 80256698 80256562 ID=Msa1042340-mRNA-1:exon:21815;Parent=Msa1042340-mRNA-1
chr7_1 exon 80256936 80257268 80256936 ID=Msa1042340-mRNA-1:exon:21816;Parent=Msa1042340-mRNA-1
chr7_1 exon 80257360 80257650 80257360 ID=Msa1042340-mRNA-1:exon:21817;Parent=Msa1042340-mRNA-1
chr7_1 exon 80257727 80257810 80257727 ID=Msa1042340-mRNA-1:exon:21818;Parent=Msa1042340-mRNA-1
chr7_1 exon 80257907 80258040 80257907 ID=Msa1042340-mRNA-1:exon:21819;Parent=Msa1042340-mRNA-1
chr7_1 exon 80258133 80258360 80258133 ID=Msa1042340-mRNA-1:exon:21820;Parent=Msa1042340-mRNA-1
chr7_1 exon 80258486 80258657 80258486 ID=Msa1042340-mRNA-1:exon:21821;Parent=Msa1042340-mRNA-1
chr7_1 exon 80258883 80259137 80258883 ID=Msa1042340-mRNA-1:exon:21822;Parent=Msa1042340-mRNA-1
chr7_1 exon 80259334 80259624 80259334 ID=Msa1042340-mRNA-1:exon:21823;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80252081 80252457 80252081 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80252948 80253068 80252948 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80253139 80253227 80253139 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80253336 80253420 80253336 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80253590 80253880 80253590 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80254125 80254215 80254125 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80254313 80255213 80254313 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80255417 80255577 80255417 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80255705 80255808 80255705 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80255964 80256129 80255964 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80256219 80256302 80256219 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80256562 80256698 80256562 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80256936 80257268 80256936 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80257360 80257650 80257360 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80257727 80257810 80257727 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80257907 80258040 80257907 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80258133 80258360 80258133 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80258486 80258657 80258486 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80258883 80259137 80258883 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 CDS 80259334 80259603 80259334 ID=Msa1042340-mRNA-1:cds;Parent=Msa1042340-mRNA-1
chr7_1 three_prime_UTR 80259604 80259624 80259604 ID=Msa1042340-mRNA-1:three_prime_utr;Parent=Msa1042340-mRNA-1
Gene Sequence

>Msa1042340

ATGGCATCGGTATTGGCAGGTGATGAGGTGACAATATCAACAAGCAGTCGTCGGAGTTGGACCTCGGCGAGTTTCCGGGACGTATGGACGGCAACAGCAGCGGCCATTCCGGACGTGTTTGAGCGTAGTGATCGACACACACAAGAGGATGATGAATATCACCTCACTTGGGCAGCCATTGAGCGGTTGCCAACTTTTGAGCGTATGAGAAAAGGTGTAGTGAAGCATGTTGGTGAAAATGGAAAAGTTGTGCATGATGAAGTTGATGTTGCTAAACTTGGTTTACATGATAAGAAGATCTTGTTGGATAGTATCCTCAAGATTGTTGAAGAAGACAATGAGAAGTTTCTTAGGAAACTTAGAGATAGACAAGACAGGGTGGGGATTGAAATTCCAAAAATTGAAGTTCGTTATGAGAATTTATCTGTGGAAGGAGATGTGTATGTTGGTAGCAGAGCACTTCCTACTTTACTTAATGTTACCATCAACACTTTGGAGAGTGTTCTTGGATTGTTTCGTCTTGCACCATCCAAGAAGAGAGAGATTCAGATTCTCAAACATGTTAGTGGAATTGTTAAACCATCAAGGATGACACTCCTTCTAGGTCCTCCAGGTTCTGGAAAAACAACATTGCTTCTAGCACTTGCAGGAAAACTTGATCGTGATTTACGGGCTTCTGGGAAAATAACTTACTGTGGTCATGAGCTAAATGAATTCGTTGCTGCAAAAACTTGCGCCTATATTAGTCAGCATGACATTCACTACGGAGAAATTACAGTGAGAGAGACTTTGGATTTTTCATCACGATGTCTAGGTGTTGGCAGTAGATATGAAATGTTGACAGAACTCTCAAGAAGGGAGAGAGAAGCTGGAATTAAACCAGACCCTGAGATTGATGCTTTCATGAAGGCTATTGCATTATCAGGCCAAAAAACCAGTTTCGTAACTGATTATGTTCTCAAGATGCTTGGATTGGATATTTGTGCTGACATTATGGTTGGTGATGAAATGAGAAGGGGTATCTCCGGAGGACAAAAGAAAAGAGTAACAACAGGGGAGATGCTAGTAGGACCAGCACAAGCACTCTTTATGGATGAAATATCAACCGGTTTGGACAGTTCCACAACTTTTCAAATATGCAAGTTTATGAGACAAATGGTCCACATAATGGATGTGACCGTAGTCATTTCCCTTTTACAGCCGGCACCCGAGACATTTGAACTTTTTGACGACATTATTCTACTTTCAGAAGGTCAAATTGTATATCAAGGACCGCGTGAGAACGTGCTAGAGTTCTTTGAATACACAGGTTTTAGGTGTCCTGAGAGAAAAGGCATTGCTGATTTCTTACAAGAAGTAACATCCAAGAAAGATCAACAACAATACTGGTTTAAAAGAGATGAACCTTATAGATATGTTTCAGTTCCTGAATTTGTTGATTTCTTTCATTCATTTCATATTGGAGAGGAAATTGCGGCAGAGCTTAAGGTTCCTTATAATAAGAGACAAACTCACCCAGCTGCGTTAGTGAAAGAAAAATATGGTATTTCAAATTGGGAACTATTTAAGGCATGTTTTTCAAAGGAATGGCTTCTTATGAAGAGGAATGCTTTTGTTTATGTATTCAAGACAACACAGATAACAATCATGTCAATTATTACTTTTACTGTATTCTTTAGAACAAAGATGCCAGTTGGAAATGTTCAAGATGGACAAAAGTTCCATGGTGCATTATTTTTTACACTGATAAATGTGATGTTCAATGGGATGGCAGAACTATCCATGACTGTTGCTAGGCTACCTGTGTTCTACAAACAAAGGGATTTCTTGTTTTATCCTGCATGGGCATTTGGATTACCCATATGGATTCTTAGGATCCCTCTTTCCTTTTTGGAATCAGCGATATGGATTGTTCTTACATATTTTACAATTGGGTTTGCTCCTTCTGCTAGCAGATTTTTTCGACAATTCTTGGCATTGTTTGGCATTCATCAGATGGCTCTTTCTTTATTTCGGTTCGTTGCTGCAGTTGGTAGAACACTAGTTATTGCTAATTCATTGGGTACCTTGACCTTGCTAGTGCTATTTGTGCTTGGAGGTTTCATTGTTGCTAAAGAGGACATCAAGCCATGGATGATATGGGGCTATTATATATCTCCTATAATGTATGGCCAGAATGCCATAGCAATCAATGAATTCTTAGACAAACGATGGAGTAAACCAAATACAGACACAAGAATTGATGCACCAACAATTGGAAAAGTACTTCTCAAAGCCAGAGGCTTGTATACAGAAGATTATTGGTATTGGATCTGTATTGCAGCCTTGGTTGGGTTTTCTCTTCTCTTCAACCTTCTCTTCATTCTTGCATTAACTTATTTGAATCCGTTGGGTGATTCAAAAGCAGTCACTGTGGATGAAGATGACAAGAAGAATGGGAATCCATCCTCTAGACACCATCCCCTTGAAGGCACCGGCATGGAAGTGAGAAACTCTTTAGAAATTATGAGTTCATCGAACAATGAACCGAGAAGAGGAATGGTTCTACCGTTTCAACCTCTTTCAATGACATTCAACCATATTAGCTACTATGTAGACATGCCAGCCGAAATGAAAAGTCAAGGAATCATTAAGGATAAGCTTCAACTACTGCAAGATGTTAGTGGTGCTTTTAGACCGGGTATATTAACAGCACTTGTAGGTGTTAGTGGTGCTGGAAAGACAACCCTCATGGATGTATTAGCTGGGAGAAAAACAGGTGGATACATCGAAGGAAATATCAGCATATCTGGTTACCAAAAGAACCAAGCAACATTCGCTCGAATAAGTGGTTACTGCGAACAGAATGACATTCATTCTCCACATGTTACTGTCTATGAATCACTATTGTTTTCGGCATGGCTCCGTCTTCCTTCGGATGTTAAGACACAAACTCGAAAGATGTTTGTTGAAGAAGTTATGGAGTTGGTAGAGCTGAAACCACTTAGAGATGCTCTTGTGGGCCTTCCAGGTGTGGATGGTCTATCAACAGAACAAAGGAAGAGGCTTACTATCGCTGTTGAGCTTGTTGCCAACCCTTCAATCATCTTCATGGATGAACCAACATCAGGCCTCGATGCTAGAGCCGCTGCAATCGTTATGCGAACTGTGAGAAATACAGTAGATACAGGGAGAACTGTTGTTTGCACAATTCATCAACCAAGTATAGACATTTTTGAAGCTTTTGATGAGCTATTGTTGATGAAAAGGGGAGGACAAGTTATATATGCTGGACCTCTCGGCCGCCACTCATATAAGCTTGTAGAATATTTTGAAGCTATCTCAGGGGTTCAAAAAAACAAGGAAGGTTATAATCCGGCTACATGGATGCTTGAGGTCAGCTCAGCAACAATTGAGGCTCAATTAGAAGTAGATTTTGCAGAGATTTATAACAATTCTACCCTTTACCAGAGGAATCAAGAACTTATAAAGGAGCTCAGTACTCCTGCACCAGATTCGAAGGACTTGTACTTCCCAACCAAATATTCACAGTCATTTTTTGTACAATGCAAAGCTAACTTCTGGAAACAACATTTGTCATATTGGAGACATTCTCAATATAATGCCGTCCGATTCTTGATGACCATAATCATTGGATTACTGTTTGGTCTAATATTTTGGATGCAAGCCAAAAAGACCAAAACACAACAAGATTTGCTGAATCTCTTGGGAGCCATGTACTCTGCTGTGCTTTTTCTTGGTGCGACAAATTCTTCAACCGTGCAACCAGTTGTTTCCATTGCAAGAACGATCTTTTATCGGGAAAGAGCAGCAGGAATGTATTCTTCATTGCCTTATGCATTTGGTCAGGTTGCAGTTGAGACAATTTATAATGCAATTCAAACAGCGATTTACACACTAATACTTTACTCCATGATTGGGTTTGAATGGAAGGCAGCAAACTTCTTATGGTTCTTTTACTACATACTAATGTGTTTTATCTACTTCACATTTTACGGAATGATGCTTGTTGCACTAACACCAGACCACGTTGTTGCTGGCATTTCTATGGCCTTCTTTTTGAGTTTTTGGAACTTGTTCTCTGGCTTTGTCATTCCTAGGATGCAAATTCCTATATGGTGGAGATGGTACTATTGGGCTTCTCCTGTTGCATGGACACTATATGGTCTTATAACCTCGCAGCTAGGTGACAAAAGTACAGAAATAGTGATACCAGGAGCTGGAAGCATGGAACTGAAGGAATTCTTGAAACAAAATTGGGGTTATGATCATGATTTCCTTCCACAAGTTGCTGTTGCTCATTTAGGCTGGGTTCTCCTCTTTGCATTCGTGTTTGCATTTGGCATCAAATTCCTCAACTTCCAGAGAAGATAA

Protein sequence

>Msa1042340

MASVLAGDEVTISTSSRRSWTSASFRDVWTATAAAIPDVFERSDRHTQEDDEYHLTWAAIERLPTFERMRKGVVKHVGENGKVVHDEVDVAKLGLHDKKILLDSILKIVEEDNEKFLRKLRDRQDRVGIEIPKIEVRYENLSVEGDVYVGSRALPTLLNVTINTLESVLGLFRLAPSKKREIQILKHVSGIVKPSRMTLLLGPPGSGKTTLLLALAGKLDRDLRASGKITYCGHELNEFVAAKTCAYISQHDIHYGEITVRETLDFSSRCLGVGSRYEMLTELSRREREAGIKPDPEIDAFMKAIALSGQKTSFVTDYVLKMLGLDICADIMVGDEMRRGISGGQKKRVTTGEMLVGPAQALFMDEISTGLDSSTTFQICKFMRQMVHIMDVTVVISLLQPAPETFELFDDIILLSEGQIVYQGPRENVLEFFEYTGFRCPERKGIADFLQEVTSKKDQQQYWFKRDEPYRYVSVPEFVDFFHSFHIGEEIAAELKVPYNKRQTHPAALVKEKYGISNWELFKACFSKEWLLMKRNAFVYVFKTTQITIMSIITFTVFFRTKMPVGNVQDGQKFHGALFFTLINVMFNGMAELSMTVARLPVFYKQRDFLFYPAWAFGLPIWILRIPLSFLESAIWIVLTYFTIGFAPSASRFFRQFLALFGIHQMALSLFRFVAAVGRTLVIANSLGTLTLLVLFVLGGFIVAKEDIKPWMIWGYYISPIMYGQNAIAINEFLDKRWSKPNTDTRIDAPTIGKVLLKARGLYTEDYWYWICIAALVGFSLLFNLLFILALTYLNPLGDSKAVTVDEDDKKNGNPSSRHHPLEGTGMEVRNSLEIMSSSNNEPRRGMVLPFQPLSMTFNHISYYVDMPAEMKSQGIIKDKLQLLQDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYQKNQATFARISGYCEQNDIHSPHVTVYESLLFSAWLRLPSDVKTQTRKMFVEEVMELVELKPLRDALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSYKLVEYFEAISGVQKNKEGYNPATWMLEVSSATIEAQLEVDFAEIYNNSTLYQRNQELIKELSTPAPDSKDLYFPTKYSQSFFVQCKANFWKQHLSYWRHSQYNAVRFLMTIIIGLLFGLIFWMQAKKTKTQQDLLNLLGAMYSAVLFLGATNSSTVQPVVSIARTIFYRERAAGMYSSLPYAFGQVAVETIYNAIQTAIYTLILYSMIGFEWKAANFLWFFYYILMCFIYFTFYGMMLVALTPDHVVAGISMAFFLSFWNLFSGFVIPRMQIPIWWRWYYWASPVAWTLYGLITSQLGDKSTEIVIPGAGSMELKEFLKQNWGYDHDFLPQVAVAHLGWVLLFAFVFAFGIKFLNFQRR*