AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619510 MtrunA17_Chr8g0384881 94.665 656 19 3 1 656 1 640 0.0 1234
Msa0619510 MtrunA17_Chr3g0130811 63.071 482 140 4 49 512 31 492 0.0 533
Msa0619510 MtrunA17_Chr3g0130811 56.371 259 106 3 395 647 466 723 2.70e-77 261
Msa0619510 MtrunA17_Chr1g0159951 41.973 598 251 8 2 524 3 579 4.81e-119 374
Msa0619510 MtrunA17_Chr1g0159951 35.981 214 76 6 478 654 638 827 2.21e-20 96.3
Msa0619510 MtrunA17_Chr3g0142411 37.578 322 159 6 1 284 1 318 5.11e-43 167
Msa0619510 MtrunA17_Chr5g0405291 34.202 307 171 4 1 284 1 299 2.84e-38 151
Msa0619510 MtrunA17_Chr1g0156371 37.304 319 145 9 1 284 1 299 4.17e-38 152
Msa0619510 MtrunA17_Chr4g0053121 35.410 305 118 7 1 276 1 255 4.06e-35 142
Msa0619510 MtrunA17_Chr5g0401911 31.818 396 185 11 1 368 1 339 2.14e-32 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619510 AT3G05270.3 41.829 667 260 10 1 591 1 615 5.74e-136 412
Msa0619510 AT3G05270.2 41.829 667 260 10 1 591 1 615 5.74e-136 412
Msa0619510 AT3G05270.1 41.829 667 260 10 1 591 1 615 5.74e-136 412
Msa0619510 AT1G21810.3 37.345 565 253 14 97 595 13 542 2.88e-78 261
Msa0619510 AT1G21810.3 28.826 281 136 8 397 651 381 623 5.30e-13 72.8
Msa0619510 AT1G21810.1 37.345 565 253 14 97 595 13 542 2.88e-78 261
Msa0619510 AT1G21810.1 28.826 281 136 8 397 651 381 623 5.30e-13 72.8
Msa0619510 AT1G77580.1 47.500 320 134 5 83 401 28 314 6.65e-75 253
Msa0619510 AT1G77580.4 47.500 320 134 5 83 401 28 314 6.32e-74 253
Msa0619510 AT1G77580.4 32.168 286 139 6 391 650 482 738 8.39e-20 94.7
Msa0619510 AT1G77580.2 47.500 320 134 5 83 401 62 348 1.13e-73 253
Msa0619510 AT1G77580.2 32.168 286 139 6 391 650 516 772 1.06e-19 94.4
Msa0619510 AT1G77580.3 47.500 320 134 5 83 401 62 348 1.13e-73 253
Msa0619510 AT1G77580.3 32.168 286 139 6 391 650 516 772 1.06e-19 94.4
Msa0619510 AT1G19835.6 38.264 311 143 7 1 284 1 289 8.12e-45 172
Msa0619510 AT1G19835.5 38.264 311 143 7 1 284 1 289 8.12e-45 172
Msa0619510 AT1G19835.3 38.264 311 143 7 1 284 1 289 8.12e-45 172
Msa0619510 AT1G19835.1 38.264 311 143 7 1 284 1 289 8.12e-45 172
Msa0619510 AT1G19835.4 38.264 311 143 7 1 284 1 289 8.12e-45 172
Msa0619510 AT1G19835.2 38.264 311 143 7 1 284 1 289 8.12e-45 172
Msa0619510 AT1G21810.2 33.411 431 209 11 229 595 3 419 7.80e-41 156
Msa0619510 AT1G21810.2 28.826 281 136 8 397 651 258 500 3.65e-13 72.8
Msa0619510 AT1G47900.3 34.503 342 167 6 1 286 1 341 1.77e-39 156
Msa0619510 AT1G47900.1 34.503 342 167 6 1 286 1 341 1.77e-39 156
Msa0619510 AT1G47900.2 34.503 342 167 6 1 286 1 341 1.89e-39 156
Msa0619510 AT4G36120.2 34.810 316 157 6 1 284 1 299 8.32e-37 148
Msa0619510 AT4G36120.1 34.810 316 157 6 1 284 1 299 8.32e-37 148
Msa0619510 AT2G23360.1 37.624 202 103 5 106 284 51 252 7.80e-22 101

Find 128 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAAAGACATTCTATAATT+TGG 0.160369 4_2:-70609536 None:intergenic
AACTATCTCCTTCTTTGTTT+TGG 0.200345 4_2:-70608296 None:intergenic
CTGCTCACACTCTTGCTTCT+TGG 0.211444 4_2:-70609319 None:intergenic
TCTCTCAAGTTCGAATCTTC+TGG 0.215588 4_2:-70607435 None:intergenic
AAGGCTGAGTTGTAAATAAA+TGG 0.243774 4_2:+70609380 Msa0619510:three_prime_UTR
AACAGCTAGTAAGCAAAATT+TGG 0.251696 4_2:+70607649 Msa0619510:CDS
CTGCTTTACCATGTCTTCTT+TGG 0.253352 4_2:-70606724 None:intergenic
CATTCATATCATATACTCTT+TGG 0.258300 4_2:+70609410 Msa0619510:three_prime_UTR
TTCAAGCTTAGCAACCTTCT+TGG 0.263795 4_2:-70607678 None:intergenic
CGGCTTCCACTTTCTGTATC+TGG 0.277252 4_2:-70607989 None:intergenic
TGAGTTTATTGAATCTCTTT+TGG 0.286597 4_2:-70609251 None:intergenic
GGAAAAGAAGCTGGAGAAAA+TGG 0.291680 4_2:+70608108 Msa0619510:CDS
CTGATTTCTCGAGCTGCATT+TGG 0.306496 4_2:-70608171 None:intergenic
AGTGGAAGCCGTTATGTTAA+TGG 0.328560 4_2:+70608001 Msa0619510:CDS
ATCATTTGAGGGAGTGAGTT+AGG 0.330486 4_2:+70605687 Msa0619510:five_prime_UTR
ATTCTTGAATTGATCAAATT+CGG 0.336313 4_2:-70607876 None:intergenic
GAGAAAAGCCGTAATGGATT+TGG 0.355781 4_2:+70609286 Msa0619510:CDS
GACTTGAGGAACTAGAATTC+AGG 0.356240 4_2:+70607591 Msa0619510:CDS
GGTGTACTAACTTCTTCAAT+TGG 0.366789 4_2:-70606624 None:intergenic
CCAGGCGAGACGGAGAGTTC+AGG 0.368157 4_2:+70605803 Msa0619510:CDS
CATTTAATGTGAATGATAAT+AGG 0.372447 4_2:+70607738 Msa0619510:CDS
AGTTATTTGCCACAGCTTCA+TGG 0.375858 4_2:-70607397 None:intergenic
GATTGAAAAGAATGCCGAAT+TGG 0.383971 4_2:+70608087 Msa0619510:CDS
AGGTACAATGGAAGCTGAAA+TGG 0.392441 4_2:+70608057 Msa0619510:CDS
CCTGAACTCTCCGTCTCGCC+TGG 0.392760 4_2:-70605803 None:intergenic
GCTCTTGCACTTCTCTGGCT+TGG 0.397210 4_2:-70607367 None:intergenic
ACACAACAAAGTCCCCAAAA+AGG 0.401435 4_2:+70609187 Msa0619510:CDS
TGTTATACTTTGAAGAGATT+TGG 0.401655 4_2:-70604845 None:intergenic
GAATCTCTTCCTCCAATGAA+TGG 0.402374 4_2:-70608372 None:intergenic
TACTAGCTGTTTCAGCAGCT+TGG 0.405239 4_2:-70607637 None:intergenic
GGTGACTAACTCGGTCTTCA+AGG 0.409043 4_2:-70607307 None:intergenic
CGAATTAGCTGCAGCTCTGT+TGG 0.410377 4_2:+70606692 Msa0619510:CDS
GGTGATTGTGCTGCTGCTGC+TGG 0.415328 4_2:+70605708 Msa0619510:five_prime_UTR
TTTCTGCAATGTGTAGTAGA+AGG 0.418956 4_2:+70605161 Msa0619510:five_prime_UTR
TGAACTTACCAAATCCATTA+CGG 0.432010 4_2:-70609294 None:intergenic
TTCTTTCTCTCCCTTGCACA+TGG 0.433055 4_2:+70604924 Msa0619510:five_prime_UTR
TCGCGATTTGAAGTCAAAAC+AGG 0.434769 4_2:+70608522 Msa0619510:CDS
TGTGCTGCTGCTGCTGGTGG+TGG 0.435990 4_2:+70605714 Msa0619510:five_prime_UTR
TTCAATCAAGAGCAGGAAGT+TGG 0.455060 4_2:+70608423 Msa0619510:CDS
ATCTGAAATGTTATCTGTAA+AGG 0.458369 4_2:-70607792 None:intergenic
CTAACTTCTTCAATTGGTGC+AGG 0.462359 4_2:-70606618 None:intergenic
ACCGAGTTAGTCACCTTGAT+GGG 0.462981 4_2:+70607315 Msa0619510:CDS
TGGACAGGAGGAGTTGGTTA+TGG 0.464689 4_2:+70605756 Msa0619510:CDS
GTTGAAGTCTCTTGCAACAT+TGG 0.467526 4_2:+70609111 Msa0619510:CDS
CATGGATGATTTCCTTGAGA+TGG 0.470382 4_2:+70607949 Msa0619510:CDS
TATAGATAGATACATAACTT+TGG 0.472290 4_2:-70609450 None:intergenic
GCTGCCTCATACACTCTTTG+AGG 0.477884 4_2:-70607340 None:intergenic
GATAAGAGCAGCAGAATTGA+AGG 0.478240 4_2:+70608201 Msa0619510:CDS
TGTTAATGGAGGACGAGTAT+TGG 0.478665 4_2:+70608015 Msa0619510:CDS
GAGACTTGATGCTGTGGAGA+AGG 0.483646 4_2:+70607535 Msa0619510:CDS
CTGCTTTCCAAGAGATGCAA+TGG 0.484799 4_2:-70609089 None:intergenic
GACCGAGTTAGTCACCTTGA+TGG 0.485370 4_2:+70607314 Msa0619510:CDS
TGCCGAATTGGAAAAGAAGC+TGG 0.488229 4_2:+70608099 Msa0619510:CDS
GTTGCTGAAGAAGCTGTCTC+AGG 0.493553 4_2:+70606756 Msa0619510:CDS
GTATTGGATCAATCTATTGT+TGG 0.494117 4_2:+70608031 Msa0619510:CDS
GACAACGAGAGCAATTATTC+CGG 0.494681 4_2:-70606284 None:intergenic
AAGTCATCGGAGAAAAGTCC+AGG 0.496717 4_2:+70605785 Msa0619510:CDS
GAAAAGGAGACAAGATGATA+AGG 0.497005 4_2:+70609361 Msa0619510:three_prime_UTR
GGCAAATAACTCACATGACT+CGG 0.497487 4_2:+70607409 Msa0619510:CDS
TTGTAGGTGAAATCATTTGA+GGG 0.500207 4_2:+70605676 Msa0619510:intron
CATCTATAATAACAGGATAC+CGG 0.500342 4_2:+70606265 Msa0619510:intron
GGTGATAGAGTAGCTTGGAT+TGG 0.502409 4_2:-70606579 None:intergenic
CTGCCTCATACACTCTTTGA+GGG 0.505138 4_2:-70607339 None:intergenic
GAAAGAAACCAAAACAAAGA+AGG 0.505936 4_2:+70608288 Msa0619510:CDS
AGCTCGAGAAATCAGAGAAT+CGG 0.507513 4_2:+70608179 Msa0619510:CDS
CAAGAAGCAAGAGTGTGAGC+AGG 0.509068 4_2:+70609320 Msa0619510:CDS
GGGCCCTCAAAGAGTGTATG+AGG 0.511371 4_2:+70607336 Msa0619510:CDS
AGAATTCAGGATTGCAGAGA+GGG 0.513958 4_2:+70607604 Msa0619510:CDS
ACTTCACAAGTTAACTCCAT+AGG 0.515278 4_2:-70609163 None:intergenic
AGATAAACTTGATGTAGAGA+TGG 0.518264 4_2:+70608135 Msa0619510:CDS
TTTGTAGGTGAAATCATTTG+AGG 0.518509 4_2:+70605675 Msa0619510:intron
TCAGGACAAAGAACTTGCAT+TGG 0.521630 4_2:+70609036 Msa0619510:intron
CTCAAGTTCAGCAAGATGCC+AGG 0.522890 4_2:+70608476 Msa0619510:CDS
ATGATTTCCTTGAGATGGAA+AGG 0.523962 4_2:+70607954 Msa0619510:CDS
ACTCATGAGAAAAGCCGTAA+TGG 0.524338 4_2:+70609280 Msa0619510:CDS
ATTGGAGGAAGAGATTCAAA+AGG 0.526916 4_2:+70608378 Msa0619510:CDS
GATAAACTTGATGTAGAGAT+GGG 0.528053 4_2:+70608136 Msa0619510:CDS
TTCAACTGAGATCAATCTCA+TGG 0.530613 4_2:+70607931 Msa0619510:CDS
TCGTTGAAAATCATGTGAAA+AGG 0.530655 4_2:+70609345 Msa0619510:exon
GATTGTGCTGCTGCTGCTGG+TGG 0.535515 4_2:+70605711 Msa0619510:five_prime_UTR
ATCAAGTCTCCTCTGAAGAT+CGG 0.535787 4_2:-70607522 None:intergenic
TTTAAATGGACAGGAGGAGT+TGG 0.537649 4_2:+70605750 Msa0619510:exon
AAGAAGCAAGAGTGTGAGCA+GGG 0.538699 4_2:+70609321 Msa0619510:CDS
CTCGTCCTCCATTAACATAA+CGG 0.539926 4_2:-70608009 None:intergenic
TTTACAGATAACATTTCAGA+TGG 0.540438 4_2:+70607794 Msa0619510:CDS
GAGAAAAGTTGCTGAGCTTG+AGG 0.541808 4_2:+70607454 Msa0619510:CDS
TGATTCAGACAACAGCCCTA+TGG 0.543080 4_2:+70609147 Msa0619510:CDS
CTTCACAAGTTAACTCCATA+GGG 0.543569 4_2:-70609162 None:intergenic
GCAGGCTTAGATGTGACCTC+TGG 0.546710 4_2:-70606600 None:intergenic
CTGAGAATTCAATCAAGAGC+AGG 0.555581 4_2:+70608416 Msa0619510:CDS
CAGCAAGCCTTTCCATCTCA+AGG 0.558005 4_2:-70607961 None:intergenic
ACTCTTTGAGGGCCCCATCA+AGG 0.563213 4_2:-70607328 None:intergenic
ACAGATAACATTTCAGATGG+TGG 0.563408 4_2:+70607797 Msa0619510:CDS
AAATTTGGAGAGCACCAAGA+AGG 0.563758 4_2:+70607664 Msa0619510:CDS
GATCAATCTATTGTTGGTCA+AGG 0.566842 4_2:+70608037 Msa0619510:CDS
CCCCATCAAGGTGACTAACT+CGG 0.567534 4_2:-70607316 None:intergenic
CTCAATATAAATTGAAGATG+CGG 0.569123 4_2:-70607768 None:intergenic
AATCAAGAGCAGGAAGTTGG+AGG 0.569457 4_2:+70608426 Msa0619510:CDS
GCTTTGCCAGATACAGAAAG+TGG 0.578039 4_2:+70607983 Msa0619510:CDS
GGAGAAAAGTCCAGGCGAGA+CGG 0.589443 4_2:+70605793 Msa0619510:CDS
TATTGTTGGTCAAGGTACAA+TGG 0.590943 4_2:+70608045 Msa0619510:CDS
GCATGCGTGGACCATGTGCA+AGG 0.591031 4_2:-70604935 None:intergenic
ATCAAGAGCAGGAAGTTGGA+GGG 0.592927 4_2:+70608427 Msa0619510:CDS
TAGAATTCAGGATTGCAGAG+AGG 0.594182 4_2:+70607603 Msa0619510:CDS
GCAAATAACTCACATGACTC+GGG 0.598199 4_2:+70607410 Msa0619510:CDS
TCAGAGGAGACTTGATGCTG+TGG 0.600308 4_2:+70607529 Msa0619510:CDS
GCTGCAAGACAGAAGAACTC+AGG 0.602737 4_2:+70607284 Msa0619510:CDS
ACATTGCAGAAAACGAAGAT+CGG 0.608923 4_2:-70605150 None:intergenic
ACTGAAATTTGCTCAAACTG+AGG 0.609862 4_2:+70608327 Msa0619510:CDS
CTATTCGCTCCGATCTTCAG+AGG 0.616299 4_2:+70607513 Msa0619510:CDS
CCTCTGGTGATAGAGTAGCT+TGG 0.616609 4_2:-70606584 None:intergenic
GAACATGAGTCAGAACAGCT+TGG 0.617775 4_2:-70607839 None:intergenic
GCAAAAGATCCATGAAGCTG+TGG 0.621012 4_2:+70607388 Msa0619510:CDS
GGCTGTTGTCTGAATCAAGT+AGG 0.621986 4_2:-70609141 None:intergenic
AATAATGTGTGTGTGAGAAG+AGG 0.622912 4_2:-70604961 None:intergenic
AATTAGTGCCAAAGAAGACA+TGG 0.626226 4_2:+70606716 Msa0619510:CDS
GAGTCATGGATTTCAGTCTA+CGG 0.630257 4_2:-70607709 None:intergenic
CATGCGTGGACCATGTGCAA+GGG 0.631425 4_2:-70604934 None:intergenic
CTGGGAGAAGGCTGAAAACG+AGG 0.637297 4_2:+70607235 Msa0619510:CDS
GTTATGGCGGAGAAAGTCAT+CGG 0.642989 4_2:+70605772 Msa0619510:CDS
GGAAGCCGTTATGTTAATGG+AGG 0.654516 4_2:+70608004 Msa0619510:CDS
TGAGCTGCAATCTCGACTTG+AGG 0.664109 4_2:+70607577 Msa0619510:CDS
AGATGCCAGGACTTTGCACA+AGG 0.664420 4_2:+70608489 Msa0619510:CDS
CCGAGTTAGTCACCTTGATG+GGG 0.664423 4_2:+70607316 Msa0619510:CDS
ACAGGAGGAGTTGGTTATGG+CGG 0.665341 4_2:+70605759 Msa0619510:CDS
TGAGAAGAGGATAGCATGCG+TGG 0.672762 4_2:-70604948 None:intergenic
AAAGAAGCTGGAGAAAATGG+AGG 0.684854 4_2:+70608111 Msa0619510:CDS
CCAAGCTACTCTATCACCAG+AGG 0.697015 4_2:+70606584 Msa0619510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTTTTGAATCCT+TGG + chr4_2:70605233-70605252 Msa0619510:intron 15.0%
!!! TATTTATTTTTTGAATCCTT+GGG + chr4_2:70605234-70605253 Msa0619510:intron 15.0%
!! TGAAAACAAAACAAAATATA+AGG - chr4_2:70605562-70605581 None:intergenic 15.0%
!!! TTGTTTTGTTTTCATTTTAT+TGG + chr4_2:70605568-70605587 Msa0619510:intron 15.0%
!!! TACTGTTTTTCATTTTATTT+AGG + chr4_2:70607212-70607231 Msa0619510:intron 15.0%
!! TTAATAACAATAAAGTGTAG+CGG + chr4_2:70605376-70605395 Msa0619510:intron 20.0%
!! ATCAGATAATAAAAAAGAGA+AGG - chr4_2:70605528-70605547 None:intergenic 20.0%
!!! TATTGATTTGATGATTTTGT+AGG + chr4_2:70605660-70605679 Msa0619510:intron 20.0%
!! GAGATGAAAAAAAAAATTGA+GGG + chr4_2:70606081-70606100 Msa0619510:intron 20.0%
!!! CTATTTTCATCTATAATAAC+AGG + chr4_2:70606258-70606277 Msa0619510:intron 20.0%
!!! TTTTTTTTTTCTAAGCATTC+AGG + chr4_2:70606463-70606482 Msa0619510:intron 20.0%
!!! CCTTCTTCTTTATATTTTTT+GGG - chr4_2:70606648-70606667 None:intergenic 20.0%
!!! ACCTTCTTCTTTATATTTTT+TGG - chr4_2:70606649-70606668 None:intergenic 20.0%
!! TAATCTACGAATTAAATATC+TGG - chr4_2:70606797-70606816 None:intergenic 20.0%
!! ATCATAATCTTCTAACTTAA+TGG + chr4_2:70607149-70607168 Msa0619510:intron 20.0%
!! TCATAATCTTCTAACTTAAT+GGG + chr4_2:70607150-70607169 Msa0619510:intron 20.0%
!!! ATATCTTTTCATATATACCT+TGG - chr4_2:70607193-70607212 None:intergenic 20.0%
!!! TTTTTCATTTTATTTAGGCT+GGG + chr4_2:70607217-70607236 Msa0619510:intron 20.0%
!! CATTTAATGTGAATGATAAT+AGG + chr4_2:70607738-70607757 Msa0619510:CDS 20.0%
!! ATTCTTGAATTGATCAAATT+CGG - chr4_2:70607879-70607898 None:intergenic 20.0%
!! ATTGCAAAATACATTAAACA+CGG - chr4_2:70608587-70608606 None:intergenic 20.0%
!!! CAGATACTAAGTTTTTTATA+TGG - chr4_2:70609011-70609030 None:intergenic 20.0%
!! TATAGATAGATACATAACTT+TGG - chr4_2:70609453-70609472 None:intergenic 20.0%
!!! TGAACTTTGAAAAATTGAAA+TGG + chr4_2:70609485-70609504 Msa0619510:three_prime_UTR 20.0%
!! GATAAAGACATTCTATAATT+TGG - chr4_2:70609539-70609558 None:intergenic 20.0%
!! TGTTATACTTTGAAGAGATT+TGG - chr4_2:70604848-70604867 None:intergenic 25.0%
!!! CTATTATTTTACACGTTTCT+TGG - chr4_2:70605024-70605043 None:intergenic 25.0%
!!! TTTTGTCTAATTTTGACGTA+TGG + chr4_2:70605348-70605367 Msa0619510:intron 25.0%
! AGATAATAAAAAAGAGAAGG+TGG - chr4_2:70605525-70605544 None:intergenic 25.0%
! GAATGTGTACTAGATAATAT+GGG + chr4_2:70606010-70606029 Msa0619510:intron 25.0%
!! ATTTTCTCAAGTGAAAATCT+CGG + chr4_2:70606046-70606065 Msa0619510:intron 25.0%
! GGAGATGAAAAAAAAAATTG+AGG + chr4_2:70606080-70606099 Msa0619510:intron 25.0%
!!! AAGAAAGTGTCTTTACTTTA+AGG + chr4_2:70606168-70606187 Msa0619510:intron 25.0%
!!! AGAAAGTGTCTTTACTTTAA+GGG + chr4_2:70606169-70606188 Msa0619510:intron 25.0%
! AATCAGATTCATCACATTAT+TGG - chr4_2:70606522-70606541 None:intergenic 25.0%
! CCCAAAAAATATAAAGAAGA+AGG + chr4_2:70606645-70606664 Msa0619510:CDS 25.0%
! AAAATTAATTACAGCTGCAA+AGG - chr4_2:70606938-70606957 None:intergenic 25.0%
!!! GTTTTTCATTTTATTTAGGC+TGG + chr4_2:70607216-70607235 Msa0619510:intron 25.0%
!! ATTAAATGTTTTACGAGTCA+TGG - chr4_2:70607726-70607745 None:intergenic 25.0%
! CTCAATATAAATTGAAGATG+CGG - chr4_2:70607771-70607790 None:intergenic 25.0%
!! ATCTGAAATGTTATCTGTAA+AGG - chr4_2:70607795-70607814 None:intergenic 25.0%
! TTTACAGATAACATTTCAGA+TGG + chr4_2:70607794-70607813 Msa0619510:CDS 25.0%
! TTCAAGAATAAAAAGACTAC+TGG + chr4_2:70607890-70607909 Msa0619510:CDS 25.0%
! GATTTCAAAAATCCATTCAT+TGG + chr4_2:70608360-70608379 Msa0619510:CDS 25.0%
!!! TCAGTTTGCTAATACTTATT+TGG + chr4_2:70608545-70608564 Msa0619510:intron 25.0%
! TCATAAAAAGTAATGCTAGA+AGG - chr4_2:70608621-70608640 None:intergenic 25.0%
!!! ATTCTTCAATCCTTTTTTGT+TGG + chr4_2:70608664-70608683 Msa0619510:intron 25.0%
! ATTGTTTCAACCAACAAAAA+AGG - chr4_2:70608677-70608696 None:intergenic 25.0%
! AATGCAATTTAGTTGTAGTT+TGG - chr4_2:70608804-70608823 None:intergenic 25.0%
! ACTAAATTGCATTTGTAGTT+TGG + chr4_2:70608811-70608830 Msa0619510:intron 25.0%
! GTTAAGTAATCATATTGCAT+TGG + chr4_2:70608976-70608995 Msa0619510:intron 25.0%
!! GAGTTTATTGAATCTCTTTT+GGG - chr4_2:70609253-70609272 None:intergenic 25.0%
!! TGAGTTTATTGAATCTCTTT+TGG - chr4_2:70609254-70609273 None:intergenic 25.0%
! CATTCATATCATATACTCTT+TGG + chr4_2:70609410-70609429 Msa0619510:three_prime_UTR 25.0%
!!! TATTTTTTGAATCCTTGGGA+TGG + chr4_2:70605238-70605257 Msa0619510:intron 30.0%
TTCAAAGCAGTATCCTTATT+TGG + chr4_2:70605408-70605427 Msa0619510:intron 30.0%
! TCAAAGCAGTATCCTTATTT+GGG + chr4_2:70605409-70605428 Msa0619510:intron 30.0%
!! GCTTCATAACTTGTTCAAAA+TGG + chr4_2:70605434-70605453 Msa0619510:intron 30.0%
!! TCATAACTTGTTCAAAATGG+AGG + chr4_2:70605437-70605456 Msa0619510:intron 30.0%
TTTGTAGGTGAAATCATTTG+AGG + chr4_2:70605675-70605694 Msa0619510:intron 30.0%
TTGTAGGTGAAATCATTTGA+GGG + chr4_2:70605676-70605695 Msa0619510:intron 30.0%
!!! GTTTTTGGCTGTGTTTTAAA+TGG + chr4_2:70605736-70605755 Msa0619510:exon 30.0%
! AGAAAGATTTTCTGATGAAC+AGG + chr4_2:70605844-70605863 Msa0619510:CDS 30.0%
AACATACATGCAGTCAAAAA+TGG - chr4_2:70605904-70605923 None:intergenic 30.0%
GGAATGTGTACTAGATAATA+TGG + chr4_2:70606009-70606028 Msa0619510:intron 30.0%
! GAGATTTTCACTTGAGAAAA+TGG - chr4_2:70606047-70606066 None:intergenic 30.0%
!! GAAAGTGTCTTTACTTTAAG+GGG + chr4_2:70606170-70606189 Msa0619510:intron 30.0%
CATCTATAATAACAGGATAC+CGG + chr4_2:70606265-70606284 Msa0619510:intron 30.0%
AACTATCTCAAGTTACAGTA+GGG - chr4_2:70606309-70606328 None:intergenic 30.0%
AAACTATCTCAAGTTACAGT+AGG - chr4_2:70606310-70606329 None:intergenic 30.0%
! GAGATAGTTTGTAAATGTCT+AGG + chr4_2:70606320-70606339 Msa0619510:intron 30.0%
TGAAAACAATGGTTATTGCT+CGG + chr4_2:70606348-70606367 Msa0619510:intron 30.0%
TATGTTGTAATGAATCTGCT+CGG + chr4_2:70606488-70606507 Msa0619510:intron 30.0%
GTATATCAATAAATTTGCCC+TGG + chr4_2:70606877-70606896 Msa0619510:intron 30.0%
AAAACTTATCTACCAAACCA+GGG - chr4_2:70606897-70606916 None:intergenic 30.0%
AAAAACTTATCTACCAAACC+AGG - chr4_2:70606898-70606917 None:intergenic 30.0%
AAGGTAAGAAAAATGAACCA+TGG - chr4_2:70607112-70607131 None:intergenic 30.0%
!! ATGGTTCATTTTTCTTACCT+TGG + chr4_2:70607111-70607130 Msa0619510:intron 30.0%
!! TGGTTCATTTTTCTTACCTT+GGG + chr4_2:70607112-70607131 Msa0619510:intron 30.0%
GAAGATTATGATGATAGTCA+TGG - chr4_2:70607141-70607160 None:intergenic 30.0%
TTTCACAGAAGTTTAAACCA+AGG + chr4_2:70607173-70607192 Msa0619510:intron 30.0%
AACAGCTAGTAAGCAAAATT+TGG + chr4_2:70607649-70607668 Msa0619510:CDS 30.0%
GTATTGGATCAATCTATTGT+TGG + chr4_2:70608031-70608050 Msa0619510:CDS 30.0%
AGATAAACTTGATGTAGAGA+TGG + chr4_2:70608135-70608154 Msa0619510:CDS 30.0%
GATAAACTTGATGTAGAGAT+GGG + chr4_2:70608136-70608155 Msa0619510:CDS 30.0%
GAAAGAAACCAAAACAAAGA+AGG + chr4_2:70608288-70608307 Msa0619510:CDS 30.0%
!! AACTATCTCCTTCTTTGTTT+TGG - chr4_2:70608299-70608318 None:intergenic 30.0%
TTCAAAAATCCATTCATTGG+AGG + chr4_2:70608363-70608382 Msa0619510:CDS 30.0%
TTTAGTTGTAGTTTGGACTA+TGG - chr4_2:70608797-70608816 None:intergenic 30.0%
TCATATAAACAGCAACACAA+AGG - chr4_2:70608872-70608891 None:intergenic 30.0%
AACTGCTATTACTGGTATTT+AGG - chr4_2:70608959-70608978 None:intergenic 30.0%
GATTACTTAACTGCTATTAC+TGG - chr4_2:70608967-70608986 None:intergenic 30.0%
!! AACTTAGTATCTGCTATTTC+AGG + chr4_2:70609018-70609037 Msa0619510:intron 30.0%
! AATTTTTCACCTCCTTTTTG+GGG - chr4_2:70609202-70609221 None:intergenic 30.0%
! CAATTTTTCACCTCCTTTTT+GGG - chr4_2:70609203-70609222 None:intergenic 30.0%
! TCAATTTTTCACCTCCTTTT+TGG - chr4_2:70609204-70609223 None:intergenic 30.0%
TGAACTTACCAAATCCATTA+CGG - chr4_2:70609297-70609316 None:intergenic 30.0%
TCGTTGAAAATCATGTGAAA+AGG + chr4_2:70609345-70609364 Msa0619510:exon 30.0%
AAGGCTGAGTTGTAAATAAA+TGG + chr4_2:70609380-70609399 Msa0619510:three_prime_UTR 30.0%
! AAGACAACGAAAAAGTGCAA+TGG - chr4_2:70604898-70604917 None:intergenic 35.0%
AATAATGTGTGTGTGAGAAG+AGG - chr4_2:70604964-70604983 None:intergenic 35.0%
ACATTGCAGAAAACGAAGAT+CGG - chr4_2:70605153-70605172 None:intergenic 35.0%
TTTCTGCAATGTGTAGTAGA+AGG + chr4_2:70605161-70605180 Msa0619510:five_prime_UTR 35.0%
GTTGAAAGAGACATGAATGA+GGG - chr4_2:70605203-70605222 None:intergenic 35.0%
AGTTGAAAGAGACATGAATG+AGG - chr4_2:70605204-70605223 None:intergenic 35.0%
GTTATGAAGCTTCCCAAATA+AGG - chr4_2:70605424-70605443 None:intergenic 35.0%
ATACAGAAACTCATAACCAC+TGG - chr4_2:70605643-70605662 None:intergenic 35.0%
! AAGATTTTCTGATGAACAGG+TGG + chr4_2:70605847-70605866 Msa0619510:intron 35.0%
! CAATTTTACTCACTGTCACA+TGG + chr4_2:70605939-70605958 Msa0619510:intron 35.0%
TCTTTCACAATTCAGTCTTG+TGG + chr4_2:70605987-70606006 Msa0619510:intron 35.0%
! CTTTCACAATTCAGTCTTGT+GGG + chr4_2:70605988-70606007 Msa0619510:intron 35.0%
!! AAAATCTCGGTGTTTGTTGA+AGG + chr4_2:70606059-70606078 Msa0619510:intron 35.0%
TCTAGGCTACATGAAAACAA+TGG + chr4_2:70606337-70606356 Msa0619510:intron 35.0%
!!! AGTTCGCTTTTTAAGCATTC+AGG + chr4_2:70606392-70606411 Msa0619510:intron 35.0%
TTTGTTGCAATGAATCTGCT+CGG + chr4_2:70606417-70606436 Msa0619510:intron 35.0%
GGTGTACTAACTTCTTCAAT+TGG - chr4_2:70606627-70606646 None:intergenic 35.0%
AATTAGTGCCAAAGAAGACA+TGG + chr4_2:70606716-70606735 Msa0619510:CDS 35.0%
TGTCTCAGGTATTTACTGTT+TGG + chr4_2:70606770-70606789 Msa0619510:intron 35.0%
TCAATAAATTTGCCCTGGTT+TGG + chr4_2:70606882-70606901 Msa0619510:intron 35.0%
!! ATTTTATTTAGGCTGGGAGA+AGG + chr4_2:70607223-70607242 Msa0619510:intron 35.0%
ACAGATAACATTTCAGATGG+TGG + chr4_2:70607797-70607816 Msa0619510:CDS 35.0%
TTCAACTGAGATCAATCTCA+TGG + chr4_2:70607931-70607950 Msa0619510:CDS 35.0%
ATGATTTCCTTGAGATGGAA+AGG + chr4_2:70607954-70607973 Msa0619510:CDS 35.0%
GATCAATCTATTGTTGGTCA+AGG + chr4_2:70608037-70608056 Msa0619510:CDS 35.0%
TATTGTTGGTCAAGGTACAA+TGG + chr4_2:70608045-70608064 Msa0619510:CDS 35.0%
GATTGAAAAGAATGCCGAAT+TGG + chr4_2:70608087-70608106 Msa0619510:CDS 35.0%
! ACTGAAATTTGCTCAAACTG+AGG + chr4_2:70608327-70608346 Msa0619510:CDS 35.0%
ATTGGAGGAAGAGATTCAAA+AGG + chr4_2:70608378-70608397 Msa0619510:CDS 35.0%
AACAGCAACACAAAGGAATT+GGG - chr4_2:70608865-70608884 None:intergenic 35.0%
AAACAGCAACACAAAGGAAT+TGG - chr4_2:70608866-70608885 None:intergenic 35.0%
!!! CAAGAGATGCAATGGTTTTT+TGG - chr4_2:70609084-70609103 None:intergenic 35.0%
CAAAAAACCATTGCATCTCT+TGG + chr4_2:70609082-70609101 Msa0619510:CDS 35.0%
CTTCACAAGTTAACTCCATA+GGG - chr4_2:70609165-70609184 None:intergenic 35.0%
ACTTCACAAGTTAACTCCAT+AGG - chr4_2:70609166-70609185 None:intergenic 35.0%
GAAAAGGAGACAAGATGATA+AGG + chr4_2:70609361-70609380 Msa0619510:three_prime_UTR 35.0%
! TTTTGAATCCTTGGGATGGT+AGG + chr4_2:70605242-70605261 Msa0619510:intron 40.0%
! TAGATTTTACGCAGATCCAG+TGG + chr4_2:70605624-70605643 Msa0619510:intron 40.0%
ATCATTTGAGGGAGTGAGTT+AGG + chr4_2:70605687-70605706 Msa0619510:five_prime_UTR 40.0%
!! TGGCTGTGTTTTAAATGGAC+AGG + chr4_2:70605741-70605760 Msa0619510:exon 40.0%
!! CTGTGTTTTAAATGGACAGG+AGG + chr4_2:70605744-70605763 Msa0619510:exon 40.0%
TTTAAATGGACAGGAGGAGT+TGG + chr4_2:70605750-70605769 Msa0619510:exon 40.0%
TTACTCACTGTCACATGGTT+TGG + chr4_2:70605944-70605963 Msa0619510:intron 40.0%
TACTCACTGTCACATGGTTT+GGG + chr4_2:70605945-70605964 Msa0619510:intron 40.0%
! AAAAATTGAGGGCGTGAATG+TGG + chr4_2:70606092-70606111 Msa0619510:intron 40.0%
TGTTGCAGACATTGTGAAAC+AGG + chr4_2:70606141-70606160 Msa0619510:intron 40.0%
GACAACGAGAGCAATTATTC+CGG - chr4_2:70606287-70606306 None:intergenic 40.0%
TACCTTCACAGTTACAGCAT+GGG - chr4_2:70606556-70606575 None:intergenic 40.0%
ATACCTTCACAGTTACAGCA+TGG - chr4_2:70606557-70606576 None:intergenic 40.0%
CTAACTTCTTCAATTGGTGC+AGG - chr4_2:70606621-70606640 None:intergenic 40.0%
CTGCTTTACCATGTCTTCTT+TGG - chr4_2:70606727-70606746 None:intergenic 40.0%
! TGCTTCTTTTTGCTTGTCCA+TGG + chr4_2:70607092-70607111 Msa0619510:intron 40.0%
AGTTATTTGCCACAGCTTCA+TGG - chr4_2:70607400-70607419 None:intergenic 40.0%
GGCAAATAACTCACATGACT+CGG + chr4_2:70607409-70607428 Msa0619510:CDS 40.0%
GCAAATAACTCACATGACTC+GGG + chr4_2:70607410-70607429 Msa0619510:CDS 40.0%
TCTCTCAAGTTCGAATCTTC+TGG - chr4_2:70607438-70607457 None:intergenic 40.0%
! ATCAAGTCTCCTCTGAAGAT+CGG - chr4_2:70607525-70607544 None:intergenic 40.0%
GACTTGAGGAACTAGAATTC+AGG + chr4_2:70607591-70607610 Msa0619510:CDS 40.0%
TAGAATTCAGGATTGCAGAG+AGG + chr4_2:70607603-70607622 Msa0619510:CDS 40.0%
AGAATTCAGGATTGCAGAGA+GGG + chr4_2:70607604-70607623 Msa0619510:CDS 40.0%
!! AAATTTGGAGAGCACCAAGA+AGG + chr4_2:70607664-70607683 Msa0619510:CDS 40.0%
TTCAAGCTTAGCAACCTTCT+TGG - chr4_2:70607681-70607700 None:intergenic 40.0%
GAGTCATGGATTTCAGTCTA+CGG - chr4_2:70607712-70607731 None:intergenic 40.0%
CATGGATGATTTCCTTGAGA+TGG + chr4_2:70607949-70607968 Msa0619510:CDS 40.0%
AGTGGAAGCCGTTATGTTAA+TGG + chr4_2:70608001-70608020 Msa0619510:CDS 40.0%
CTCGTCCTCCATTAACATAA+CGG - chr4_2:70608012-70608031 None:intergenic 40.0%
TGTTAATGGAGGACGAGTAT+TGG + chr4_2:70608015-70608034 Msa0619510:CDS 40.0%
AGGTACAATGGAAGCTGAAA+TGG + chr4_2:70608057-70608076 Msa0619510:CDS 40.0%
! CTCCAGCTTCTTTTCCAATT+CGG - chr4_2:70608104-70608123 None:intergenic 40.0%
GGAAAAGAAGCTGGAGAAAA+TGG + chr4_2:70608108-70608127 Msa0619510:CDS 40.0%
AAAGAAGCTGGAGAAAATGG+AGG + chr4_2:70608111-70608130 Msa0619510:CDS 40.0%
AGCTCGAGAAATCAGAGAAT+CGG + chr4_2:70608179-70608198 Msa0619510:CDS 40.0%
GATAAGAGCAGCAGAATTGA+AGG + chr4_2:70608201-70608220 Msa0619510:CDS 40.0%
GAATCTCTTCCTCCAATGAA+TGG - chr4_2:70608375-70608394 None:intergenic 40.0%
CTGAGAATTCAATCAAGAGC+AGG + chr4_2:70608416-70608435 Msa0619510:CDS 40.0%
TTCAATCAAGAGCAGGAAGT+TGG + chr4_2:70608423-70608442 Msa0619510:CDS 40.0%
! ATTTTCCTTGTGCAAAGTCC+TGG - chr4_2:70608497-70608516 None:intergenic 40.0%
! TCGCGATTTGAAGTCAAAAC+AGG + chr4_2:70608522-70608541 Msa0619510:CDS 40.0%
TGCATTTGTAGTTTGGACTC+TGG + chr4_2:70608818-70608837 Msa0619510:intron 40.0%
ACAGCAACACAAAGGAATTG+GGG - chr4_2:70608864-70608883 None:intergenic 40.0%
TCAGGACAAAGAACTTGCAT+TGG + chr4_2:70609036-70609055 Msa0619510:intron 40.0%
GTTGAAGTCTCTTGCAACAT+TGG + chr4_2:70609111-70609130 Msa0619510:CDS 40.0%
ACACAACAAAGTCCCCAAAA+AGG + chr4_2:70609187-70609206 Msa0619510:CDS 40.0%
ACTCATGAGAAAAGCCGTAA+TGG + chr4_2:70609280-70609299 Msa0619510:CDS 40.0%
!! GAGAAAAGCCGTAATGGATT+TGG + chr4_2:70609286-70609305 Msa0619510:CDS 40.0%
TTCTTTCTCTCCCTTGCACA+TGG + chr4_2:70604924-70604943 Msa0619510:five_prime_UTR 45.0%
ATTACACACCTACCATCCCA+AGG - chr4_2:70605253-70605272 None:intergenic 45.0%
! GTTATGGCGGAGAAAGTCAT+CGG + chr4_2:70605772-70605791 Msa0619510:CDS 45.0%
AAGTCATCGGAGAAAAGTCC+AGG + chr4_2:70605785-70605804 Msa0619510:CDS 45.0%
CTCGGTCTGCAAATTTCTCA+TGG + chr4_2:70606366-70606385 Msa0619510:intron 45.0%
TTCCCATGCTGTAACTGTGA+AGG + chr4_2:70606551-70606570 Msa0619510:intron 45.0%
GGTGATAGAGTAGCTTGGAT+TGG - chr4_2:70606582-70606601 None:intergenic 45.0%
CTTCACAACCATCATGATCC+CGG + chr4_2:70607035-70607054 Msa0619510:intron 45.0%
TCCTAACTCCTAACGTGAAC+CGG - chr4_2:70607057-70607076 None:intergenic 45.0%
ATGATAGTCATGGCTTCCCA+AGG - chr4_2:70607131-70607150 None:intergenic 45.0%
ACCGAGTTAGTCACCTTGAT+GGG + chr4_2:70607315-70607334 Msa0619510:CDS 45.0%
CTGCCTCATACACTCTTTGA+GGG - chr4_2:70607342-70607361 None:intergenic 45.0%
! CTTTTGCTCTTGCACTTCTC+TGG - chr4_2:70607375-70607394 None:intergenic 45.0%
GCAAAAGATCCATGAAGCTG+TGG + chr4_2:70607388-70607407 Msa0619510:CDS 45.0%
GAGAAAAGTTGCTGAGCTTG+AGG + chr4_2:70607454-70607473 Msa0619510:CDS 45.0%
! TACTAGCTGTTTCAGCAGCT+TGG - chr4_2:70607640-70607659 None:intergenic 45.0%
GAACATGAGTCAGAACAGCT+TGG - chr4_2:70607842-70607861 None:intergenic 45.0%
GCTTTGCCAGATACAGAAAG+TGG + chr4_2:70607983-70608002 Msa0619510:CDS 45.0%
GGAAGCCGTTATGTTAATGG+AGG + chr4_2:70608004-70608023 Msa0619510:CDS 45.0%
TGCCGAATTGGAAAAGAAGC+TGG + chr4_2:70608099-70608118 Msa0619510:CDS 45.0%
CTGATTTCTCGAGCTGCATT+TGG - chr4_2:70608174-70608193 None:intergenic 45.0%
AATCAAGAGCAGGAAGTTGG+AGG + chr4_2:70608426-70608445 Msa0619510:CDS 45.0%
ATCAAGAGCAGGAAGTTGGA+GGG + chr4_2:70608427-70608446 Msa0619510:CDS 45.0%
CAGCAACACAAAGGAATTGG+GGG - chr4_2:70608863-70608882 None:intergenic 45.0%
CTGCTTTCCAAGAGATGCAA+TGG - chr4_2:70609092-70609111 None:intergenic 45.0%
GGCTGTTGTCTGAATCAAGT+AGG - chr4_2:70609144-70609163 None:intergenic 45.0%
TGATTCAGACAACAGCCCTA+TGG + chr4_2:70609147-70609166 Msa0619510:CDS 45.0%
CAACAAAGTCCCCAAAAAGG+AGG + chr4_2:70609190-70609209 Msa0619510:CDS 45.0%
! AAGAAGCAAGAGTGTGAGCA+GGG + chr4_2:70609321-70609340 Msa0619510:CDS 45.0%
TGAGAAGAGGATAGCATGCG+TGG - chr4_2:70604951-70604970 None:intergenic 50.0%
! TGGACAGGAGGAGTTGGTTA+TGG + chr4_2:70605756-70605775 Msa0619510:CDS 50.0%
! ACAGGAGGAGTTGGTTATGG+CGG + chr4_2:70605759-70605778 Msa0619510:CDS 50.0%
CTCGGTCTGCACATTCTTCA+TGG + chr4_2:70606435-70606454 Msa0619510:intron 50.0%
CCTCTGGTGATAGAGTAGCT+TGG - chr4_2:70606587-70606606 None:intergenic 50.0%
CCAAGCTACTCTATCACCAG+AGG + chr4_2:70606584-70606603 Msa0619510:CDS 50.0%
CGAATTAGCTGCAGCTCTGT+TGG + chr4_2:70606692-70606711 Msa0619510:CDS 50.0%
GTTGCTGAAGAAGCTGTCTC+AGG + chr4_2:70606756-70606775 Msa0619510:CDS 50.0%
AACGTGAACCGGGATCATGA+TGG - chr4_2:70607046-70607065 None:intergenic 50.0%
TCATGATCCCGGTTCACGTT+AGG + chr4_2:70607046-70607065 Msa0619510:intron 50.0%
CCTAACTCCTAACGTGAACC+GGG - chr4_2:70607056-70607075 None:intergenic 50.0%
GCTGCAAGACAGAAGAACTC+AGG + chr4_2:70607284-70607303 Msa0619510:CDS 50.0%
GGTGACTAACTCGGTCTTCA+AGG - chr4_2:70607310-70607329 None:intergenic 50.0%
GACCGAGTTAGTCACCTTGA+TGG + chr4_2:70607314-70607333 Msa0619510:CDS 50.0%
CCCCATCAAGGTGACTAACT+CGG - chr4_2:70607319-70607338 None:intergenic 50.0%
CCGAGTTAGTCACCTTGATG+GGG + chr4_2:70607316-70607335 Msa0619510:CDS 50.0%
GCTGCCTCATACACTCTTTG+AGG - chr4_2:70607343-70607362 None:intergenic 50.0%
CTATTCGCTCCGATCTTCAG+AGG + chr4_2:70607513-70607532 Msa0619510:CDS 50.0%
TCAGAGGAGACTTGATGCTG+TGG + chr4_2:70607529-70607548 Msa0619510:CDS 50.0%
GAGACTTGATGCTGTGGAGA+AGG + chr4_2:70607535-70607554 Msa0619510:CDS 50.0%
! TGAGCTGCAATCTCGACTTG+AGG + chr4_2:70607577-70607596 Msa0619510:CDS 50.0%
CAGCAAGCCTTTCCATCTCA+AGG - chr4_2:70607964-70607983 None:intergenic 50.0%
CGGCTTCCACTTTCTGTATC+TGG - chr4_2:70607992-70608011 None:intergenic 50.0%
CTCAAGTTCAGCAAGATGCC+AGG + chr4_2:70608476-70608495 Msa0619510:CDS 50.0%
AGATGCCAGGACTTTGCACA+AGG + chr4_2:70608489-70608508 Msa0619510:CDS 50.0%
GCTAGTCAACAGCAGCTTGT+CGG - chr4_2:70608752-70608771 None:intergenic 50.0%
! GTAGTTTGGACTCTGGAAGC+AGG + chr4_2:70608825-70608844 Msa0619510:intron 50.0%
CTGCTCACACTCTTGCTTCT+TGG - chr4_2:70609322-70609341 None:intergenic 50.0%
! CAAGAAGCAAGAGTGTGAGC+AGG + chr4_2:70609320-70609339 Msa0619510:CDS 50.0%
CATGCGTGGACCATGTGCAA+GGG - chr4_2:70604937-70604956 None:intergenic 55.0%
!!! CTGCTGCTGGTGGTGGTTTT+TGG + chr4_2:70605721-70605740 Msa0619510:five_prime_UTR 55.0%
GGAGAAAAGTCCAGGCGAGA+CGG + chr4_2:70605793-70605812 Msa0619510:CDS 55.0%
GCAGGCTTAGATGTGACCTC+TGG - chr4_2:70606603-70606622 None:intergenic 55.0%
CCCGGTTCACGTTAGGAGTT+AGG + chr4_2:70607053-70607072 Msa0619510:intron 55.0%
CTGGGAGAAGGCTGAAAACG+AGG + chr4_2:70607235-70607254 Msa0619510:CDS 55.0%
! ACTCTTTGAGGGCCCCATCA+AGG - chr4_2:70607331-70607350 None:intergenic 55.0%
! GGGCCCTCAAAGAGTGTATG+AGG + chr4_2:70607336-70607355 Msa0619510:CDS 55.0%
GCTCTTGCACTTCTCTGGCT+TGG - chr4_2:70607370-70607389 None:intergenic 55.0%
AGCAGCTTGTCGGTAGTCGA+CGG - chr4_2:70608742-70608761 None:intergenic 55.0%
GCATGCGTGGACCATGTGCA+AGG - chr4_2:70604938-70604957 None:intergenic 60.0%
! GGTGATTGTGCTGCTGCTGC+TGG + chr4_2:70605708-70605727 Msa0619510:five_prime_UTR 60.0%
! GATTGTGCTGCTGCTGCTGG+TGG + chr4_2:70605711-70605730 Msa0619510:five_prime_UTR 60.0%
! TGTGCTGCTGCTGCTGGTGG+TGG + chr4_2:70605714-70605733 Msa0619510:five_prime_UTR 65.0%
CCTGAACTCTCCGTCTCGCC+TGG - chr4_2:70605806-70605825 None:intergenic 65.0%
CCAGGCGAGACGGAGAGTTC+AGG + chr4_2:70605803-70605822 Msa0619510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70604833 70609606 70604833 ID=Msa0619510;Name=Msa0619510
chr4_2 mRNA 70604833 70609606 70604833 ID=Msa0619510-mRNA-1;Parent=Msa0619510;Name=Msa0619510-mRNA-1;_AED=0.12;_eAED=0.12;_QI=423|0.6|0.83|0.83|0.8|0.66|6|255|656
chr4_2 exon 70604833 70605182 70604833 ID=Msa0619510-mRNA-1:exon:20658;Parent=Msa0619510-mRNA-1
chr4_2 exon 70605682 70605865 70605682 ID=Msa0619510-mRNA-1:exon:20659;Parent=Msa0619510-mRNA-1
chr4_2 exon 70606280 70606312 70606280 ID=Msa0619510-mRNA-1:exon:20660;Parent=Msa0619510-mRNA-1
chr4_2 exon 70606573 70606777 70606573 ID=Msa0619510-mRNA-1:exon:20661;Parent=Msa0619510-mRNA-1
chr4_2 exon 70607234 70608543 70607234 ID=Msa0619510-mRNA-1:exon:20662;Parent=Msa0619510-mRNA-1
chr4_2 exon 70609040 70609606 70609040 ID=Msa0619510-mRNA-1:exon:20663;Parent=Msa0619510-mRNA-1
chr4_2 five_prime_UTR 70604833 70605182 70604833 ID=Msa0619510-mRNA-1:five_prime_utr;Parent=Msa0619510-mRNA-1
chr4_2 five_prime_UTR 70605682 70605754 70605682 ID=Msa0619510-mRNA-1:five_prime_utr;Parent=Msa0619510-mRNA-1
chr4_2 CDS 70605755 70605865 70605755 ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1
chr4_2 CDS 70606280 70606312 70606280 ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1
chr4_2 CDS 70606573 70606777 70606573 ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1
chr4_2 CDS 70607234 70608543 70607234 ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1
chr4_2 CDS 70609040 70609351 70609040 ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1
chr4_2 three_prime_UTR 70609352 70609606 70609352 ID=Msa0619510-mRNA-1:three_prime_utr;Parent=Msa0619510-mRNA-1
Gene Sequence

>Msa0619510

ATGGACAGGAGGAGTTGGTTATGGCGGAGAAAGTCATCGGAGAAAAGTCCAGGCGAGACGGAGAGTTCAGGATCAGTATCGTCTCTCTCAGAAAGATTTTCTGATGAACAGGATACCGGAATAATTGCTCTCGTTGTCCCTACTGTATATCCAATCCAAGCTACTCTATCACCAGAGGTCACATCTAAGCCTGCACCAATTGAAGAAGTTAGTACACCCAAAAAATATAAAGAAGAAGGTATTGACGTGAAGACTCTTACAAACGAATTAGCTGCAGCTCTGTTGGAAATTAGTGCCAAAGAAGACATGGTAAAGCAGCATTCTAAAGTTGCTGAAGAAGCTGTCTCAGGCTGGGAGAAGGCTGAAAACGAGGTGTCGTCTTTAAAACAACAACTTGATGCTGCAAGACAGAAGAACTCAGGCCTTGAAGACCGAGTTAGTCACCTTGATGGGGCCCTCAAAGAGTGTATGAGGCAGCTTCGCCAAGCCAGAGAAGTGCAAGAGCAAAAGATCCATGAAGCTGTGGCAAATAACTCACATGACTCGGGATCCAGAAGATTCGAACTTGAGAGAAAAGTTGCTGAGCTTGAGGTTCAACTTCAAACATCAAAAGCAGAAGCTGCTGCATCTATTCGCTCCGATCTTCAGAGGAGACTTGATGCTGTGGAGAAGGAGAATTCAAGTCTTCAGCTTGAGCTGCAATCTCGACTTGAGGAACTAGAATTCAGGATTGCAGAGAGGGATTTGAGTATCCAAGCTGCTGAAACAGCTAGTAAGCAAAATTTGGAGAGCACCAAGAAGGTTGCTAAGCTTGAAGCTGAGTGCCGTAGACTGAAATCCATGACTCGTAAAACATTTAATGTGAATGATAATAGGTCATTGACCGCATCTTCAATTTATATTGAGTCCTTTACAGATAACATTTCAGATGGTGGAGAGCTGAATGAATATGAACCAAGCTGTTCTGACTCATGTTCATCTGCTTTAATTACCGAATTTGATCAATTCAAGAATAAAAAGACTACTGGAAAAAATCATATTGCGACTTCAACTGAGATCAATCTCATGGATGATTTCCTTGAGATGGAAAGGCTTGCTGCTTTGCCAGATACAGAAAGTGGAAGCCGTTATGTTAATGGAGGACGAGTATTGGATCAATCTATTGTTGGTCAAGGTACAATGGAAGCTGAAATGGAAGCTATGATTGAAAAGAATGCCGAATTGGAAAAGAAGCTGGAGAAAATGGAGGCAGATAAACTTGATGTAGAGATGGGTTTAACTGAGTGCCAAATGCAGCTCGAGAAATCAGAGAATCGGATAAGAGCAGCAGAATTGAAGGTAGAAGAGCTTCAAACTCAGTTAGCTCTTGCAAACAAATCGAATCAAGAAGCATATGAAGAACTGAAAGAAACCAAAACAAAGAAGGAGATAGTTGAGTCGAAACTGAAATTTGCTCAAACTGAGGTAGAAGAACTGATTTCAAAAATCCATTCATTGGAGGAAGAGATTCAAAAGGAACGAGCTTTGTCTGCTGAGAATTCAATCAAGAGCAGGAAGTTGGAGGGCGAGCTTTCAAGAATGAAGCATGAAGCTCAAGTTCAGCAAGATGCCAGGACTTTGCACAAGGAAAATATTAATCGCGATTTGAAGTCAAAACAGGACAAAGAACTTGCATTGGCTACTAGCAAGTTTGCTGAGTGCCAAAAAACCATTGCATCTCTTGGAAAGCAGTTGAAGTCTCTTGCAACATTGGAAGACTTCCTACTTGATTCAGACAACAGCCCTATGGAGTTAACTTGTGAAGTTACACAACAAAGTCCCCAAAAAGGAGGTGAAAAATTGAAATTAAATCATAGTGATTTGAGTATGCCCAAAAGAGATTCAATAAACTCATCTATTACTCATGAGAAAAGCCGTAATGGATTTGGTAAGTTCATACCAAGAAGCAAGAGTGTGAGCAGGGCTCGTTGA

Protein sequence

>Msa0619510

MDRRSWLWRRKSSEKSPGETESSGSVSSLSERFSDEQDTGIIALVVPTVYPIQATLSPEVTSKPAPIEEVSTPKKYKEEGIDVKTLTNELAAALLEISAKEDMVKQHSKVAEEAVSGWEKAENEVSSLKQQLDAARQKNSGLEDRVSHLDGALKECMRQLRQAREVQEQKIHEAVANNSHDSGSRRFELERKVAELEVQLQTSKAEAAASIRSDLQRRLDAVEKENSSLQLELQSRLEELEFRIAERDLSIQAAETASKQNLESTKKVAKLEAECRRLKSMTRKTFNVNDNRSLTASSIYIESFTDNISDGGELNEYEPSCSDSCSSALITEFDQFKNKKTTGKNHIATSTEINLMDDFLEMERLAALPDTESGSRYVNGGRVLDQSIVGQGTMEAEMEAMIEKNAELEKKLEKMEADKLDVEMGLTECQMQLEKSENRIRAAELKVEELQTQLALANKSNQEAYEELKETKTKKEIVESKLKFAQTEVEELISKIHSLEEEIQKERALSAENSIKSRKLEGELSRMKHEAQVQQDARTLHKENINRDLKSKQDKELALATSKFAECQKTIASLGKQLKSLATLEDFLLDSDNSPMELTCEVTQQSPQKGGEKLKLNHSDLSMPKRDSINSSITHEKSRNGFGKFIPRSKSVSRAR*