Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0619510 | XP_003630362.1 | 94.665 | 656 | 19 | 3 | 1 | 656 | 1 | 640 | 0.0 | 1234 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0619510 | sp|Q8LLE5|FPP_SOLLC | 44.983 | 598 | 256 | 9 | 100 | 651 | 1 | 571 | 1.10e-139 | 423 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002490 | Msa0619510 | 0.807646 | 4.565786e-50 | -8.615850e-47 |
Msa0002540 | Msa0619510 | 0.803766 | 2.979897e-49 | -8.615850e-47 |
Msa0016670 | Msa0619510 | 0.810543 | 1.093955e-50 | -8.615850e-47 |
Msa0029540 | Msa0619510 | -0.817210 | 3.711427e-52 | -8.615850e-47 |
Msa0030280 | Msa0619510 | 0.819447 | 1.155747e-52 | -8.615850e-47 |
Msa0041620 | Msa0619510 | 0.803020 | 4.254820e-49 | -8.615850e-47 |
Msa0052610 | Msa0619510 | 0.803715 | 3.053448e-49 | -8.615850e-47 |
Msa0077880 | Msa0619510 | 0.822639 | 2.126741e-53 | -8.615850e-47 |
Msa0094010 | Msa0619510 | 0.830795 | 2.401376e-55 | -8.615850e-47 |
Msa0094950 | Msa0619510 | 0.812686 | 3.742794e-51 | -8.615850e-47 |
Msa0097850 | Msa0619510 | 0.808283 | 3.341218e-50 | -8.615850e-47 |
Msa0114540 | Msa0619510 | -0.805715 | 1.167794e-49 | -8.615850e-47 |
Msa0115390 | Msa0619510 | 0.803981 | 2.689788e-49 | -8.615850e-47 |
Msa0616240 | Msa0619510 | 0.804244 | 2.370409e-49 | -8.615850e-47 |
Msa0618040 | Msa0619510 | 0.800439 | 1.440554e-48 | -8.615850e-47 |
Msa0619470 | Msa0619510 | 0.957586 | 1.897773e-115 | -8.615850e-47 |
Msa0619510 | Msa0628890 | 0.812357 | 4.416781e-51 | -8.615850e-47 |
Msa0619510 | Msa0639120 | 0.805681 | 1.187151e-49 | -8.615850e-47 |
Msa0619510 | Msa0659600 | 0.942530 | 6.105397e-102 | -8.615850e-47 |
Msa0619510 | Msa0669850 | 0.801171 | 1.020977e-48 | -8.615850e-47 |
Msa0619510 | Msa0684500 | 0.817703 | 2.873385e-52 | -8.615850e-47 |
Msa0619510 | Msa0687630 | 0.801301 | 9.604750e-49 | -8.615850e-47 |
Msa0619510 | Msa0699570 | 0.803024 | 4.246476e-49 | -8.615850e-47 |
Msa0619510 | Msa0701280 | 0.800826 | 1.201324e-48 | -8.615850e-47 |
Msa0619510 | Msa0711490 | 0.817765 | 2.783268e-52 | -8.615850e-47 |
Msa0619510 | Msa0731270 | 0.808087 | 3.680064e-50 | -8.615850e-47 |
Msa0619510 | Msa0750920 | 0.814501 | 1.492150e-51 | -8.615850e-47 |
Msa0619510 | Msa0760380 | 0.803901 | 2.793668e-49 | -8.615850e-47 |
Msa0619510 | Msa0771280 | 0.804559 | 2.038679e-49 | -8.615850e-47 |
Msa0619510 | Msa0797750 | 0.800532 | 1.378947e-48 | -8.615850e-47 |
Msa0619510 | Msa0824640 | 0.816784 | 4.626569e-52 | -8.615850e-47 |
Msa0619510 | Msa0848530 | 0.814559 | 1.448263e-51 | -8.615850e-47 |
Msa0619510 | Msa0850960 | 0.819306 | 1.244994e-52 | -8.615850e-47 |
Msa0619510 | Msa0864010 | 0.823068 | 1.689784e-53 | -8.615850e-47 |
Msa0619510 | Msa0993530 | 0.812696 | 3.723140e-51 | -8.615850e-47 |
Msa0619510 | Msa1022970 | 0.846954 | 1.569962e-59 | -8.615850e-47 |
Msa0619510 | Msa1061720 | 0.813398 | 2.612075e-51 | -8.615850e-47 |
Msa0619510 | Msa1082700 | 0.825529 | 4.460033e-54 | -8.615850e-47 |
Msa0619510 | Msa1124310 | 0.803606 | 3.217012e-49 | -8.615850e-47 |
Msa0619510 | Msa1131560 | 0.803729 | 3.033296e-49 | -8.615850e-47 |
Msa0619510 | Msa1150500 | 0.838411 | 2.921548e-57 | -8.615850e-47 |
Msa0619510 | Msa1152510 | 0.808537 | 2.950048e-50 | -8.615850e-47 |
Msa0619510 | Msa1157690 | 0.802400 | 5.712590e-49 | -8.615850e-47 |
Msa0619510 | Msa1193950 | -0.801039 | 1.086806e-48 | -8.615850e-47 |
Msa0619510 | Msa1198530 | 0.813247 | 2.818602e-51 | -8.615850e-47 |
Msa0619510 | Msa1208890 | -0.819157 | 1.345859e-52 | -8.615850e-47 |
Msa0619510 | Msa1245940 | -0.805763 | 1.140729e-49 | -8.615850e-47 |
Msa0619510 | Msa1252190 | 0.801302 | 9.601018e-49 | -8.615850e-47 |
Msa0619510 | Msa1259070 | -0.807224 | 5.610450e-50 | -8.615850e-47 |
Msa0619510 | Msa1267840 | 0.801579 | 8.425374e-49 | -8.615850e-47 |
Msa0619510 | Msa1283990 | 0.800069 | 1.713148e-48 | -8.615850e-47 |
Msa0619510 | Msa1284040 | 0.808342 | 3.246852e-50 | -8.615850e-47 |
Msa0619510 | Msa1299700 | 0.800231 | 1.587988e-48 | -8.615850e-47 |
Msa0619510 | Msa1311960 | 0.807608 | 4.650961e-50 | -8.615850e-47 |
Msa0619510 | Msa1323050 | 0.809709 | 1.654905e-50 | -8.615850e-47 |
Msa0619510 | Msa1343070 | 0.803807 | 2.922689e-49 | -8.615850e-47 |
Msa0619510 | Msa1371430 | 0.811935 | 5.458043e-51 | -8.615850e-47 |
Msa0619510 | Msa1400610 | -0.811506 | 6.767554e-51 | -8.615850e-47 |
Msa0619510 | Msa1404190 | 0.801726 | 7.858910e-49 | -8.615850e-47 |
Msa0619510 | Msa1433600 | 0.800641 | 1.310194e-48 | -8.615850e-47 |
Msa0619510 | Msa1461490 | 0.805742 | 1.152358e-49 | -8.615850e-47 |
Msa0124340 | Msa0619510 | 0.833038 | 6.709388e-56 | -8.615850e-47 |
Msa0124990 | Msa0619510 | 0.803617 | 3.200193e-49 | -8.615850e-47 |
Msa0125770 | Msa0619510 | 0.808760 | 2.643599e-50 | -8.615850e-47 |
Msa0138970 | Msa0619510 | -0.831226 | 1.882496e-55 | -8.615850e-47 |
Msa0152840 | Msa0619510 | 0.822173 | 2.729595e-53 | -8.615850e-47 |
Msa0170410 | Msa0619510 | 0.800605 | 1.332694e-48 | -8.615850e-47 |
Msa0172350 | Msa0619510 | 0.804814 | 1.803439e-49 | -8.615850e-47 |
Msa0222920 | Msa0619510 | 0.837114 | 6.292463e-57 | -8.615850e-47 |
Msa0226470 | Msa0619510 | 0.801933 | 7.125548e-49 | -8.615850e-47 |
Msa0227400 | Msa0619510 | 0.810064 | 1.387953e-50 | -8.615850e-47 |
Msa0367470 | Msa0619510 | 0.806471 | 8.094413e-50 | -8.615850e-47 |
Msa0376040 | Msa0619510 | 0.803156 | 3.987287e-49 | -8.615850e-47 |
Msa0402330 | Msa0619510 | 0.802877 | 4.553561e-49 | -8.615850e-47 |
Msa0413450 | Msa0619510 | 0.804932 | 1.703426e-49 | -8.615850e-47 |
Msa0416400 | Msa0619510 | 0.821719 | 3.476216e-53 | -8.615850e-47 |
Msa0469910 | Msa0619510 | -0.814468 | 1.517246e-51 | -8.615850e-47 |
Msa0242680 | Msa0619510 | 0.800906 | 1.156712e-48 | -8.615850e-47 |
Msa0260240 | Msa0619510 | 0.814405 | 1.566684e-51 | -8.615850e-47 |
Msa0260280 | Msa0619510 | 0.814513 | 1.483083e-51 | -8.615850e-47 |
Msa0302450 | Msa0619510 | 0.802307 | 5.970559e-49 | -8.615850e-47 |
Msa0304260 | Msa0619510 | 0.817353 | 3.446494e-52 | -8.615850e-47 |
Msa0304300 | Msa0619510 | 0.811527 | 6.697554e-51 | -8.615850e-47 |
Msa0328210 | Msa0619510 | 0.815579 | 8.599546e-52 | -8.615850e-47 |
Msa0355270 | Msa0619510 | 0.801904 | 7.226054e-49 | -8.615850e-47 |
Msa0360990 | Msa0619510 | 0.811908 | 5.532902e-51 | -8.615850e-47 |
Msa0516040 | Msa0619510 | 0.802246 | 6.144126e-49 | -8.615850e-47 |
Msa0546300 | Msa0619510 | 0.803749 | 3.005175e-49 | -8.615850e-47 |
Msa0546540 | Msa0619510 | 0.807323 | 5.347415e-50 | -8.615850e-47 |
Msa0560470 | Msa0619510 | 0.800979 | 1.117970e-48 | -8.615850e-47 |
Msa0576890 | Msa0619510 | 0.800971 | 1.121780e-48 | -8.615850e-47 |
Msa0585900 | Msa0619510 | 0.824832 | 6.518109e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0619510 | MtrunA17_Chr8g0384881 | 94.665 | 656 | 19 | 3 | 1 | 656 | 1 | 640 | 0.0 | 1234 |
Msa0619510 | MtrunA17_Chr3g0130811 | 63.071 | 482 | 140 | 4 | 49 | 512 | 31 | 492 | 0.0 | 533 |
Msa0619510 | MtrunA17_Chr3g0130811 | 56.371 | 259 | 106 | 3 | 395 | 647 | 466 | 723 | 2.70e-77 | 261 |
Msa0619510 | MtrunA17_Chr1g0159951 | 41.973 | 598 | 251 | 8 | 2 | 524 | 3 | 579 | 4.81e-119 | 374 |
Msa0619510 | MtrunA17_Chr1g0159951 | 35.981 | 214 | 76 | 6 | 478 | 654 | 638 | 827 | 2.21e-20 | 96.3 |
Msa0619510 | MtrunA17_Chr3g0142411 | 37.578 | 322 | 159 | 6 | 1 | 284 | 1 | 318 | 5.11e-43 | 167 |
Msa0619510 | MtrunA17_Chr5g0405291 | 34.202 | 307 | 171 | 4 | 1 | 284 | 1 | 299 | 2.84e-38 | 151 |
Msa0619510 | MtrunA17_Chr1g0156371 | 37.304 | 319 | 145 | 9 | 1 | 284 | 1 | 299 | 4.17e-38 | 152 |
Msa0619510 | MtrunA17_Chr4g0053121 | 35.410 | 305 | 118 | 7 | 1 | 276 | 1 | 255 | 4.06e-35 | 142 |
Msa0619510 | MtrunA17_Chr5g0401911 | 31.818 | 396 | 185 | 11 | 1 | 368 | 1 | 339 | 2.14e-32 | 134 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0619510 | AT3G05270.3 | 41.829 | 667 | 260 | 10 | 1 | 591 | 1 | 615 | 5.74e-136 | 412 |
Msa0619510 | AT3G05270.2 | 41.829 | 667 | 260 | 10 | 1 | 591 | 1 | 615 | 5.74e-136 | 412 |
Msa0619510 | AT3G05270.1 | 41.829 | 667 | 260 | 10 | 1 | 591 | 1 | 615 | 5.74e-136 | 412 |
Msa0619510 | AT1G21810.3 | 37.345 | 565 | 253 | 14 | 97 | 595 | 13 | 542 | 2.88e-78 | 261 |
Msa0619510 | AT1G21810.3 | 28.826 | 281 | 136 | 8 | 397 | 651 | 381 | 623 | 5.30e-13 | 72.8 |
Msa0619510 | AT1G21810.1 | 37.345 | 565 | 253 | 14 | 97 | 595 | 13 | 542 | 2.88e-78 | 261 |
Msa0619510 | AT1G21810.1 | 28.826 | 281 | 136 | 8 | 397 | 651 | 381 | 623 | 5.30e-13 | 72.8 |
Msa0619510 | AT1G77580.1 | 47.500 | 320 | 134 | 5 | 83 | 401 | 28 | 314 | 6.65e-75 | 253 |
Msa0619510 | AT1G77580.4 | 47.500 | 320 | 134 | 5 | 83 | 401 | 28 | 314 | 6.32e-74 | 253 |
Msa0619510 | AT1G77580.4 | 32.168 | 286 | 139 | 6 | 391 | 650 | 482 | 738 | 8.39e-20 | 94.7 |
Msa0619510 | AT1G77580.2 | 47.500 | 320 | 134 | 5 | 83 | 401 | 62 | 348 | 1.13e-73 | 253 |
Msa0619510 | AT1G77580.2 | 32.168 | 286 | 139 | 6 | 391 | 650 | 516 | 772 | 1.06e-19 | 94.4 |
Msa0619510 | AT1G77580.3 | 47.500 | 320 | 134 | 5 | 83 | 401 | 62 | 348 | 1.13e-73 | 253 |
Msa0619510 | AT1G77580.3 | 32.168 | 286 | 139 | 6 | 391 | 650 | 516 | 772 | 1.06e-19 | 94.4 |
Msa0619510 | AT1G19835.6 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 8.12e-45 | 172 |
Msa0619510 | AT1G19835.5 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 8.12e-45 | 172 |
Msa0619510 | AT1G19835.3 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 8.12e-45 | 172 |
Msa0619510 | AT1G19835.1 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 8.12e-45 | 172 |
Msa0619510 | AT1G19835.4 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 8.12e-45 | 172 |
Msa0619510 | AT1G19835.2 | 38.264 | 311 | 143 | 7 | 1 | 284 | 1 | 289 | 8.12e-45 | 172 |
Msa0619510 | AT1G21810.2 | 33.411 | 431 | 209 | 11 | 229 | 595 | 3 | 419 | 7.80e-41 | 156 |
Msa0619510 | AT1G21810.2 | 28.826 | 281 | 136 | 8 | 397 | 651 | 258 | 500 | 3.65e-13 | 72.8 |
Msa0619510 | AT1G47900.3 | 34.503 | 342 | 167 | 6 | 1 | 286 | 1 | 341 | 1.77e-39 | 156 |
Msa0619510 | AT1G47900.1 | 34.503 | 342 | 167 | 6 | 1 | 286 | 1 | 341 | 1.77e-39 | 156 |
Msa0619510 | AT1G47900.2 | 34.503 | 342 | 167 | 6 | 1 | 286 | 1 | 341 | 1.89e-39 | 156 |
Msa0619510 | AT4G36120.2 | 34.810 | 316 | 157 | 6 | 1 | 284 | 1 | 299 | 8.32e-37 | 148 |
Msa0619510 | AT4G36120.1 | 34.810 | 316 | 157 | 6 | 1 | 284 | 1 | 299 | 8.32e-37 | 148 |
Msa0619510 | AT2G23360.1 | 37.624 | 202 | 103 | 5 | 106 | 284 | 51 | 252 | 7.80e-22 | 101 |
Find 128 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATAAAGACATTCTATAATT+TGG | 0.160369 | 4_2:-70609536 | None:intergenic |
AACTATCTCCTTCTTTGTTT+TGG | 0.200345 | 4_2:-70608296 | None:intergenic |
CTGCTCACACTCTTGCTTCT+TGG | 0.211444 | 4_2:-70609319 | None:intergenic |
TCTCTCAAGTTCGAATCTTC+TGG | 0.215588 | 4_2:-70607435 | None:intergenic |
AAGGCTGAGTTGTAAATAAA+TGG | 0.243774 | 4_2:+70609380 | Msa0619510:three_prime_UTR |
AACAGCTAGTAAGCAAAATT+TGG | 0.251696 | 4_2:+70607649 | Msa0619510:CDS |
CTGCTTTACCATGTCTTCTT+TGG | 0.253352 | 4_2:-70606724 | None:intergenic |
CATTCATATCATATACTCTT+TGG | 0.258300 | 4_2:+70609410 | Msa0619510:three_prime_UTR |
TTCAAGCTTAGCAACCTTCT+TGG | 0.263795 | 4_2:-70607678 | None:intergenic |
CGGCTTCCACTTTCTGTATC+TGG | 0.277252 | 4_2:-70607989 | None:intergenic |
TGAGTTTATTGAATCTCTTT+TGG | 0.286597 | 4_2:-70609251 | None:intergenic |
GGAAAAGAAGCTGGAGAAAA+TGG | 0.291680 | 4_2:+70608108 | Msa0619510:CDS |
CTGATTTCTCGAGCTGCATT+TGG | 0.306496 | 4_2:-70608171 | None:intergenic |
AGTGGAAGCCGTTATGTTAA+TGG | 0.328560 | 4_2:+70608001 | Msa0619510:CDS |
ATCATTTGAGGGAGTGAGTT+AGG | 0.330486 | 4_2:+70605687 | Msa0619510:five_prime_UTR |
ATTCTTGAATTGATCAAATT+CGG | 0.336313 | 4_2:-70607876 | None:intergenic |
GAGAAAAGCCGTAATGGATT+TGG | 0.355781 | 4_2:+70609286 | Msa0619510:CDS |
GACTTGAGGAACTAGAATTC+AGG | 0.356240 | 4_2:+70607591 | Msa0619510:CDS |
GGTGTACTAACTTCTTCAAT+TGG | 0.366789 | 4_2:-70606624 | None:intergenic |
CCAGGCGAGACGGAGAGTTC+AGG | 0.368157 | 4_2:+70605803 | Msa0619510:CDS |
CATTTAATGTGAATGATAAT+AGG | 0.372447 | 4_2:+70607738 | Msa0619510:CDS |
AGTTATTTGCCACAGCTTCA+TGG | 0.375858 | 4_2:-70607397 | None:intergenic |
GATTGAAAAGAATGCCGAAT+TGG | 0.383971 | 4_2:+70608087 | Msa0619510:CDS |
AGGTACAATGGAAGCTGAAA+TGG | 0.392441 | 4_2:+70608057 | Msa0619510:CDS |
CCTGAACTCTCCGTCTCGCC+TGG | 0.392760 | 4_2:-70605803 | None:intergenic |
GCTCTTGCACTTCTCTGGCT+TGG | 0.397210 | 4_2:-70607367 | None:intergenic |
ACACAACAAAGTCCCCAAAA+AGG | 0.401435 | 4_2:+70609187 | Msa0619510:CDS |
TGTTATACTTTGAAGAGATT+TGG | 0.401655 | 4_2:-70604845 | None:intergenic |
GAATCTCTTCCTCCAATGAA+TGG | 0.402374 | 4_2:-70608372 | None:intergenic |
TACTAGCTGTTTCAGCAGCT+TGG | 0.405239 | 4_2:-70607637 | None:intergenic |
GGTGACTAACTCGGTCTTCA+AGG | 0.409043 | 4_2:-70607307 | None:intergenic |
CGAATTAGCTGCAGCTCTGT+TGG | 0.410377 | 4_2:+70606692 | Msa0619510:CDS |
GGTGATTGTGCTGCTGCTGC+TGG | 0.415328 | 4_2:+70605708 | Msa0619510:five_prime_UTR |
TTTCTGCAATGTGTAGTAGA+AGG | 0.418956 | 4_2:+70605161 | Msa0619510:five_prime_UTR |
TGAACTTACCAAATCCATTA+CGG | 0.432010 | 4_2:-70609294 | None:intergenic |
TTCTTTCTCTCCCTTGCACA+TGG | 0.433055 | 4_2:+70604924 | Msa0619510:five_prime_UTR |
TCGCGATTTGAAGTCAAAAC+AGG | 0.434769 | 4_2:+70608522 | Msa0619510:CDS |
TGTGCTGCTGCTGCTGGTGG+TGG | 0.435990 | 4_2:+70605714 | Msa0619510:five_prime_UTR |
TTCAATCAAGAGCAGGAAGT+TGG | 0.455060 | 4_2:+70608423 | Msa0619510:CDS |
ATCTGAAATGTTATCTGTAA+AGG | 0.458369 | 4_2:-70607792 | None:intergenic |
CTAACTTCTTCAATTGGTGC+AGG | 0.462359 | 4_2:-70606618 | None:intergenic |
ACCGAGTTAGTCACCTTGAT+GGG | 0.462981 | 4_2:+70607315 | Msa0619510:CDS |
TGGACAGGAGGAGTTGGTTA+TGG | 0.464689 | 4_2:+70605756 | Msa0619510:CDS |
GTTGAAGTCTCTTGCAACAT+TGG | 0.467526 | 4_2:+70609111 | Msa0619510:CDS |
CATGGATGATTTCCTTGAGA+TGG | 0.470382 | 4_2:+70607949 | Msa0619510:CDS |
TATAGATAGATACATAACTT+TGG | 0.472290 | 4_2:-70609450 | None:intergenic |
GCTGCCTCATACACTCTTTG+AGG | 0.477884 | 4_2:-70607340 | None:intergenic |
GATAAGAGCAGCAGAATTGA+AGG | 0.478240 | 4_2:+70608201 | Msa0619510:CDS |
TGTTAATGGAGGACGAGTAT+TGG | 0.478665 | 4_2:+70608015 | Msa0619510:CDS |
GAGACTTGATGCTGTGGAGA+AGG | 0.483646 | 4_2:+70607535 | Msa0619510:CDS |
CTGCTTTCCAAGAGATGCAA+TGG | 0.484799 | 4_2:-70609089 | None:intergenic |
GACCGAGTTAGTCACCTTGA+TGG | 0.485370 | 4_2:+70607314 | Msa0619510:CDS |
TGCCGAATTGGAAAAGAAGC+TGG | 0.488229 | 4_2:+70608099 | Msa0619510:CDS |
GTTGCTGAAGAAGCTGTCTC+AGG | 0.493553 | 4_2:+70606756 | Msa0619510:CDS |
GTATTGGATCAATCTATTGT+TGG | 0.494117 | 4_2:+70608031 | Msa0619510:CDS |
GACAACGAGAGCAATTATTC+CGG | 0.494681 | 4_2:-70606284 | None:intergenic |
AAGTCATCGGAGAAAAGTCC+AGG | 0.496717 | 4_2:+70605785 | Msa0619510:CDS |
GAAAAGGAGACAAGATGATA+AGG | 0.497005 | 4_2:+70609361 | Msa0619510:three_prime_UTR |
GGCAAATAACTCACATGACT+CGG | 0.497487 | 4_2:+70607409 | Msa0619510:CDS |
TTGTAGGTGAAATCATTTGA+GGG | 0.500207 | 4_2:+70605676 | Msa0619510:intron |
CATCTATAATAACAGGATAC+CGG | 0.500342 | 4_2:+70606265 | Msa0619510:intron |
GGTGATAGAGTAGCTTGGAT+TGG | 0.502409 | 4_2:-70606579 | None:intergenic |
CTGCCTCATACACTCTTTGA+GGG | 0.505138 | 4_2:-70607339 | None:intergenic |
GAAAGAAACCAAAACAAAGA+AGG | 0.505936 | 4_2:+70608288 | Msa0619510:CDS |
AGCTCGAGAAATCAGAGAAT+CGG | 0.507513 | 4_2:+70608179 | Msa0619510:CDS |
CAAGAAGCAAGAGTGTGAGC+AGG | 0.509068 | 4_2:+70609320 | Msa0619510:CDS |
GGGCCCTCAAAGAGTGTATG+AGG | 0.511371 | 4_2:+70607336 | Msa0619510:CDS |
AGAATTCAGGATTGCAGAGA+GGG | 0.513958 | 4_2:+70607604 | Msa0619510:CDS |
ACTTCACAAGTTAACTCCAT+AGG | 0.515278 | 4_2:-70609163 | None:intergenic |
AGATAAACTTGATGTAGAGA+TGG | 0.518264 | 4_2:+70608135 | Msa0619510:CDS |
TTTGTAGGTGAAATCATTTG+AGG | 0.518509 | 4_2:+70605675 | Msa0619510:intron |
TCAGGACAAAGAACTTGCAT+TGG | 0.521630 | 4_2:+70609036 | Msa0619510:intron |
CTCAAGTTCAGCAAGATGCC+AGG | 0.522890 | 4_2:+70608476 | Msa0619510:CDS |
ATGATTTCCTTGAGATGGAA+AGG | 0.523962 | 4_2:+70607954 | Msa0619510:CDS |
ACTCATGAGAAAAGCCGTAA+TGG | 0.524338 | 4_2:+70609280 | Msa0619510:CDS |
ATTGGAGGAAGAGATTCAAA+AGG | 0.526916 | 4_2:+70608378 | Msa0619510:CDS |
GATAAACTTGATGTAGAGAT+GGG | 0.528053 | 4_2:+70608136 | Msa0619510:CDS |
TTCAACTGAGATCAATCTCA+TGG | 0.530613 | 4_2:+70607931 | Msa0619510:CDS |
TCGTTGAAAATCATGTGAAA+AGG | 0.530655 | 4_2:+70609345 | Msa0619510:exon |
GATTGTGCTGCTGCTGCTGG+TGG | 0.535515 | 4_2:+70605711 | Msa0619510:five_prime_UTR |
ATCAAGTCTCCTCTGAAGAT+CGG | 0.535787 | 4_2:-70607522 | None:intergenic |
TTTAAATGGACAGGAGGAGT+TGG | 0.537649 | 4_2:+70605750 | Msa0619510:exon |
AAGAAGCAAGAGTGTGAGCA+GGG | 0.538699 | 4_2:+70609321 | Msa0619510:CDS |
CTCGTCCTCCATTAACATAA+CGG | 0.539926 | 4_2:-70608009 | None:intergenic |
TTTACAGATAACATTTCAGA+TGG | 0.540438 | 4_2:+70607794 | Msa0619510:CDS |
GAGAAAAGTTGCTGAGCTTG+AGG | 0.541808 | 4_2:+70607454 | Msa0619510:CDS |
TGATTCAGACAACAGCCCTA+TGG | 0.543080 | 4_2:+70609147 | Msa0619510:CDS |
CTTCACAAGTTAACTCCATA+GGG | 0.543569 | 4_2:-70609162 | None:intergenic |
GCAGGCTTAGATGTGACCTC+TGG | 0.546710 | 4_2:-70606600 | None:intergenic |
CTGAGAATTCAATCAAGAGC+AGG | 0.555581 | 4_2:+70608416 | Msa0619510:CDS |
CAGCAAGCCTTTCCATCTCA+AGG | 0.558005 | 4_2:-70607961 | None:intergenic |
ACTCTTTGAGGGCCCCATCA+AGG | 0.563213 | 4_2:-70607328 | None:intergenic |
ACAGATAACATTTCAGATGG+TGG | 0.563408 | 4_2:+70607797 | Msa0619510:CDS |
AAATTTGGAGAGCACCAAGA+AGG | 0.563758 | 4_2:+70607664 | Msa0619510:CDS |
GATCAATCTATTGTTGGTCA+AGG | 0.566842 | 4_2:+70608037 | Msa0619510:CDS |
CCCCATCAAGGTGACTAACT+CGG | 0.567534 | 4_2:-70607316 | None:intergenic |
CTCAATATAAATTGAAGATG+CGG | 0.569123 | 4_2:-70607768 | None:intergenic |
AATCAAGAGCAGGAAGTTGG+AGG | 0.569457 | 4_2:+70608426 | Msa0619510:CDS |
GCTTTGCCAGATACAGAAAG+TGG | 0.578039 | 4_2:+70607983 | Msa0619510:CDS |
GGAGAAAAGTCCAGGCGAGA+CGG | 0.589443 | 4_2:+70605793 | Msa0619510:CDS |
TATTGTTGGTCAAGGTACAA+TGG | 0.590943 | 4_2:+70608045 | Msa0619510:CDS |
GCATGCGTGGACCATGTGCA+AGG | 0.591031 | 4_2:-70604935 | None:intergenic |
ATCAAGAGCAGGAAGTTGGA+GGG | 0.592927 | 4_2:+70608427 | Msa0619510:CDS |
TAGAATTCAGGATTGCAGAG+AGG | 0.594182 | 4_2:+70607603 | Msa0619510:CDS |
GCAAATAACTCACATGACTC+GGG | 0.598199 | 4_2:+70607410 | Msa0619510:CDS |
TCAGAGGAGACTTGATGCTG+TGG | 0.600308 | 4_2:+70607529 | Msa0619510:CDS |
GCTGCAAGACAGAAGAACTC+AGG | 0.602737 | 4_2:+70607284 | Msa0619510:CDS |
ACATTGCAGAAAACGAAGAT+CGG | 0.608923 | 4_2:-70605150 | None:intergenic |
ACTGAAATTTGCTCAAACTG+AGG | 0.609862 | 4_2:+70608327 | Msa0619510:CDS |
CTATTCGCTCCGATCTTCAG+AGG | 0.616299 | 4_2:+70607513 | Msa0619510:CDS |
CCTCTGGTGATAGAGTAGCT+TGG | 0.616609 | 4_2:-70606584 | None:intergenic |
GAACATGAGTCAGAACAGCT+TGG | 0.617775 | 4_2:-70607839 | None:intergenic |
GCAAAAGATCCATGAAGCTG+TGG | 0.621012 | 4_2:+70607388 | Msa0619510:CDS |
GGCTGTTGTCTGAATCAAGT+AGG | 0.621986 | 4_2:-70609141 | None:intergenic |
AATAATGTGTGTGTGAGAAG+AGG | 0.622912 | 4_2:-70604961 | None:intergenic |
AATTAGTGCCAAAGAAGACA+TGG | 0.626226 | 4_2:+70606716 | Msa0619510:CDS |
GAGTCATGGATTTCAGTCTA+CGG | 0.630257 | 4_2:-70607709 | None:intergenic |
CATGCGTGGACCATGTGCAA+GGG | 0.631425 | 4_2:-70604934 | None:intergenic |
CTGGGAGAAGGCTGAAAACG+AGG | 0.637297 | 4_2:+70607235 | Msa0619510:CDS |
GTTATGGCGGAGAAAGTCAT+CGG | 0.642989 | 4_2:+70605772 | Msa0619510:CDS |
GGAAGCCGTTATGTTAATGG+AGG | 0.654516 | 4_2:+70608004 | Msa0619510:CDS |
TGAGCTGCAATCTCGACTTG+AGG | 0.664109 | 4_2:+70607577 | Msa0619510:CDS |
AGATGCCAGGACTTTGCACA+AGG | 0.664420 | 4_2:+70608489 | Msa0619510:CDS |
CCGAGTTAGTCACCTTGATG+GGG | 0.664423 | 4_2:+70607316 | Msa0619510:CDS |
ACAGGAGGAGTTGGTTATGG+CGG | 0.665341 | 4_2:+70605759 | Msa0619510:CDS |
TGAGAAGAGGATAGCATGCG+TGG | 0.672762 | 4_2:-70604948 | None:intergenic |
AAAGAAGCTGGAGAAAATGG+AGG | 0.684854 | 4_2:+70608111 | Msa0619510:CDS |
CCAAGCTACTCTATCACCAG+AGG | 0.697015 | 4_2:+70606584 | Msa0619510:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTATTTTTTGAATCCT+TGG | + | chr4_2:70605233-70605252 | Msa0619510:intron | 15.0% |
!!! | TATTTATTTTTTGAATCCTT+GGG | + | chr4_2:70605234-70605253 | Msa0619510:intron | 15.0% |
!! | TGAAAACAAAACAAAATATA+AGG | - | chr4_2:70605562-70605581 | None:intergenic | 15.0% |
!!! | TTGTTTTGTTTTCATTTTAT+TGG | + | chr4_2:70605568-70605587 | Msa0619510:intron | 15.0% |
!!! | TACTGTTTTTCATTTTATTT+AGG | + | chr4_2:70607212-70607231 | Msa0619510:intron | 15.0% |
!! | TTAATAACAATAAAGTGTAG+CGG | + | chr4_2:70605376-70605395 | Msa0619510:intron | 20.0% |
!! | ATCAGATAATAAAAAAGAGA+AGG | - | chr4_2:70605528-70605547 | None:intergenic | 20.0% |
!!! | TATTGATTTGATGATTTTGT+AGG | + | chr4_2:70605660-70605679 | Msa0619510:intron | 20.0% |
!! | GAGATGAAAAAAAAAATTGA+GGG | + | chr4_2:70606081-70606100 | Msa0619510:intron | 20.0% |
!!! | CTATTTTCATCTATAATAAC+AGG | + | chr4_2:70606258-70606277 | Msa0619510:intron | 20.0% |
!!! | TTTTTTTTTTCTAAGCATTC+AGG | + | chr4_2:70606463-70606482 | Msa0619510:intron | 20.0% |
!!! | CCTTCTTCTTTATATTTTTT+GGG | - | chr4_2:70606648-70606667 | None:intergenic | 20.0% |
!!! | ACCTTCTTCTTTATATTTTT+TGG | - | chr4_2:70606649-70606668 | None:intergenic | 20.0% |
!! | TAATCTACGAATTAAATATC+TGG | - | chr4_2:70606797-70606816 | None:intergenic | 20.0% |
!! | ATCATAATCTTCTAACTTAA+TGG | + | chr4_2:70607149-70607168 | Msa0619510:intron | 20.0% |
!! | TCATAATCTTCTAACTTAAT+GGG | + | chr4_2:70607150-70607169 | Msa0619510:intron | 20.0% |
!!! | ATATCTTTTCATATATACCT+TGG | - | chr4_2:70607193-70607212 | None:intergenic | 20.0% |
!!! | TTTTTCATTTTATTTAGGCT+GGG | + | chr4_2:70607217-70607236 | Msa0619510:intron | 20.0% |
!! | CATTTAATGTGAATGATAAT+AGG | + | chr4_2:70607738-70607757 | Msa0619510:CDS | 20.0% |
!! | ATTCTTGAATTGATCAAATT+CGG | - | chr4_2:70607879-70607898 | None:intergenic | 20.0% |
!! | ATTGCAAAATACATTAAACA+CGG | - | chr4_2:70608587-70608606 | None:intergenic | 20.0% |
!!! | CAGATACTAAGTTTTTTATA+TGG | - | chr4_2:70609011-70609030 | None:intergenic | 20.0% |
!! | TATAGATAGATACATAACTT+TGG | - | chr4_2:70609453-70609472 | None:intergenic | 20.0% |
!!! | TGAACTTTGAAAAATTGAAA+TGG | + | chr4_2:70609485-70609504 | Msa0619510:three_prime_UTR | 20.0% |
!! | GATAAAGACATTCTATAATT+TGG | - | chr4_2:70609539-70609558 | None:intergenic | 20.0% |
!! | TGTTATACTTTGAAGAGATT+TGG | - | chr4_2:70604848-70604867 | None:intergenic | 25.0% |
!!! | CTATTATTTTACACGTTTCT+TGG | - | chr4_2:70605024-70605043 | None:intergenic | 25.0% |
!!! | TTTTGTCTAATTTTGACGTA+TGG | + | chr4_2:70605348-70605367 | Msa0619510:intron | 25.0% |
! | AGATAATAAAAAAGAGAAGG+TGG | - | chr4_2:70605525-70605544 | None:intergenic | 25.0% |
! | GAATGTGTACTAGATAATAT+GGG | + | chr4_2:70606010-70606029 | Msa0619510:intron | 25.0% |
!! | ATTTTCTCAAGTGAAAATCT+CGG | + | chr4_2:70606046-70606065 | Msa0619510:intron | 25.0% |
! | GGAGATGAAAAAAAAAATTG+AGG | + | chr4_2:70606080-70606099 | Msa0619510:intron | 25.0% |
!!! | AAGAAAGTGTCTTTACTTTA+AGG | + | chr4_2:70606168-70606187 | Msa0619510:intron | 25.0% |
!!! | AGAAAGTGTCTTTACTTTAA+GGG | + | chr4_2:70606169-70606188 | Msa0619510:intron | 25.0% |
! | AATCAGATTCATCACATTAT+TGG | - | chr4_2:70606522-70606541 | None:intergenic | 25.0% |
! | CCCAAAAAATATAAAGAAGA+AGG | + | chr4_2:70606645-70606664 | Msa0619510:CDS | 25.0% |
! | AAAATTAATTACAGCTGCAA+AGG | - | chr4_2:70606938-70606957 | None:intergenic | 25.0% |
!!! | GTTTTTCATTTTATTTAGGC+TGG | + | chr4_2:70607216-70607235 | Msa0619510:intron | 25.0% |
!! | ATTAAATGTTTTACGAGTCA+TGG | - | chr4_2:70607726-70607745 | None:intergenic | 25.0% |
! | CTCAATATAAATTGAAGATG+CGG | - | chr4_2:70607771-70607790 | None:intergenic | 25.0% |
!! | ATCTGAAATGTTATCTGTAA+AGG | - | chr4_2:70607795-70607814 | None:intergenic | 25.0% |
! | TTTACAGATAACATTTCAGA+TGG | + | chr4_2:70607794-70607813 | Msa0619510:CDS | 25.0% |
! | TTCAAGAATAAAAAGACTAC+TGG | + | chr4_2:70607890-70607909 | Msa0619510:CDS | 25.0% |
! | GATTTCAAAAATCCATTCAT+TGG | + | chr4_2:70608360-70608379 | Msa0619510:CDS | 25.0% |
!!! | TCAGTTTGCTAATACTTATT+TGG | + | chr4_2:70608545-70608564 | Msa0619510:intron | 25.0% |
! | TCATAAAAAGTAATGCTAGA+AGG | - | chr4_2:70608621-70608640 | None:intergenic | 25.0% |
!!! | ATTCTTCAATCCTTTTTTGT+TGG | + | chr4_2:70608664-70608683 | Msa0619510:intron | 25.0% |
! | ATTGTTTCAACCAACAAAAA+AGG | - | chr4_2:70608677-70608696 | None:intergenic | 25.0% |
! | AATGCAATTTAGTTGTAGTT+TGG | - | chr4_2:70608804-70608823 | None:intergenic | 25.0% |
! | ACTAAATTGCATTTGTAGTT+TGG | + | chr4_2:70608811-70608830 | Msa0619510:intron | 25.0% |
! | GTTAAGTAATCATATTGCAT+TGG | + | chr4_2:70608976-70608995 | Msa0619510:intron | 25.0% |
!! | GAGTTTATTGAATCTCTTTT+GGG | - | chr4_2:70609253-70609272 | None:intergenic | 25.0% |
!! | TGAGTTTATTGAATCTCTTT+TGG | - | chr4_2:70609254-70609273 | None:intergenic | 25.0% |
! | CATTCATATCATATACTCTT+TGG | + | chr4_2:70609410-70609429 | Msa0619510:three_prime_UTR | 25.0% |
!!! | TATTTTTTGAATCCTTGGGA+TGG | + | chr4_2:70605238-70605257 | Msa0619510:intron | 30.0% |
TTCAAAGCAGTATCCTTATT+TGG | + | chr4_2:70605408-70605427 | Msa0619510:intron | 30.0% | |
! | TCAAAGCAGTATCCTTATTT+GGG | + | chr4_2:70605409-70605428 | Msa0619510:intron | 30.0% |
!! | GCTTCATAACTTGTTCAAAA+TGG | + | chr4_2:70605434-70605453 | Msa0619510:intron | 30.0% |
!! | TCATAACTTGTTCAAAATGG+AGG | + | chr4_2:70605437-70605456 | Msa0619510:intron | 30.0% |
TTTGTAGGTGAAATCATTTG+AGG | + | chr4_2:70605675-70605694 | Msa0619510:intron | 30.0% | |
TTGTAGGTGAAATCATTTGA+GGG | + | chr4_2:70605676-70605695 | Msa0619510:intron | 30.0% | |
!!! | GTTTTTGGCTGTGTTTTAAA+TGG | + | chr4_2:70605736-70605755 | Msa0619510:exon | 30.0% |
! | AGAAAGATTTTCTGATGAAC+AGG | + | chr4_2:70605844-70605863 | Msa0619510:CDS | 30.0% |
AACATACATGCAGTCAAAAA+TGG | - | chr4_2:70605904-70605923 | None:intergenic | 30.0% | |
GGAATGTGTACTAGATAATA+TGG | + | chr4_2:70606009-70606028 | Msa0619510:intron | 30.0% | |
! | GAGATTTTCACTTGAGAAAA+TGG | - | chr4_2:70606047-70606066 | None:intergenic | 30.0% |
!! | GAAAGTGTCTTTACTTTAAG+GGG | + | chr4_2:70606170-70606189 | Msa0619510:intron | 30.0% |
CATCTATAATAACAGGATAC+CGG | + | chr4_2:70606265-70606284 | Msa0619510:intron | 30.0% | |
AACTATCTCAAGTTACAGTA+GGG | - | chr4_2:70606309-70606328 | None:intergenic | 30.0% | |
AAACTATCTCAAGTTACAGT+AGG | - | chr4_2:70606310-70606329 | None:intergenic | 30.0% | |
! | GAGATAGTTTGTAAATGTCT+AGG | + | chr4_2:70606320-70606339 | Msa0619510:intron | 30.0% |
TGAAAACAATGGTTATTGCT+CGG | + | chr4_2:70606348-70606367 | Msa0619510:intron | 30.0% | |
TATGTTGTAATGAATCTGCT+CGG | + | chr4_2:70606488-70606507 | Msa0619510:intron | 30.0% | |
GTATATCAATAAATTTGCCC+TGG | + | chr4_2:70606877-70606896 | Msa0619510:intron | 30.0% | |
AAAACTTATCTACCAAACCA+GGG | - | chr4_2:70606897-70606916 | None:intergenic | 30.0% | |
AAAAACTTATCTACCAAACC+AGG | - | chr4_2:70606898-70606917 | None:intergenic | 30.0% | |
AAGGTAAGAAAAATGAACCA+TGG | - | chr4_2:70607112-70607131 | None:intergenic | 30.0% | |
!! | ATGGTTCATTTTTCTTACCT+TGG | + | chr4_2:70607111-70607130 | Msa0619510:intron | 30.0% |
!! | TGGTTCATTTTTCTTACCTT+GGG | + | chr4_2:70607112-70607131 | Msa0619510:intron | 30.0% |
GAAGATTATGATGATAGTCA+TGG | - | chr4_2:70607141-70607160 | None:intergenic | 30.0% | |
TTTCACAGAAGTTTAAACCA+AGG | + | chr4_2:70607173-70607192 | Msa0619510:intron | 30.0% | |
AACAGCTAGTAAGCAAAATT+TGG | + | chr4_2:70607649-70607668 | Msa0619510:CDS | 30.0% | |
GTATTGGATCAATCTATTGT+TGG | + | chr4_2:70608031-70608050 | Msa0619510:CDS | 30.0% | |
AGATAAACTTGATGTAGAGA+TGG | + | chr4_2:70608135-70608154 | Msa0619510:CDS | 30.0% | |
GATAAACTTGATGTAGAGAT+GGG | + | chr4_2:70608136-70608155 | Msa0619510:CDS | 30.0% | |
GAAAGAAACCAAAACAAAGA+AGG | + | chr4_2:70608288-70608307 | Msa0619510:CDS | 30.0% | |
!! | AACTATCTCCTTCTTTGTTT+TGG | - | chr4_2:70608299-70608318 | None:intergenic | 30.0% |
TTCAAAAATCCATTCATTGG+AGG | + | chr4_2:70608363-70608382 | Msa0619510:CDS | 30.0% | |
TTTAGTTGTAGTTTGGACTA+TGG | - | chr4_2:70608797-70608816 | None:intergenic | 30.0% | |
TCATATAAACAGCAACACAA+AGG | - | chr4_2:70608872-70608891 | None:intergenic | 30.0% | |
AACTGCTATTACTGGTATTT+AGG | - | chr4_2:70608959-70608978 | None:intergenic | 30.0% | |
GATTACTTAACTGCTATTAC+TGG | - | chr4_2:70608967-70608986 | None:intergenic | 30.0% | |
!! | AACTTAGTATCTGCTATTTC+AGG | + | chr4_2:70609018-70609037 | Msa0619510:intron | 30.0% |
! | AATTTTTCACCTCCTTTTTG+GGG | - | chr4_2:70609202-70609221 | None:intergenic | 30.0% |
! | CAATTTTTCACCTCCTTTTT+GGG | - | chr4_2:70609203-70609222 | None:intergenic | 30.0% |
! | TCAATTTTTCACCTCCTTTT+TGG | - | chr4_2:70609204-70609223 | None:intergenic | 30.0% |
TGAACTTACCAAATCCATTA+CGG | - | chr4_2:70609297-70609316 | None:intergenic | 30.0% | |
TCGTTGAAAATCATGTGAAA+AGG | + | chr4_2:70609345-70609364 | Msa0619510:exon | 30.0% | |
AAGGCTGAGTTGTAAATAAA+TGG | + | chr4_2:70609380-70609399 | Msa0619510:three_prime_UTR | 30.0% | |
! | AAGACAACGAAAAAGTGCAA+TGG | - | chr4_2:70604898-70604917 | None:intergenic | 35.0% |
AATAATGTGTGTGTGAGAAG+AGG | - | chr4_2:70604964-70604983 | None:intergenic | 35.0% | |
ACATTGCAGAAAACGAAGAT+CGG | - | chr4_2:70605153-70605172 | None:intergenic | 35.0% | |
TTTCTGCAATGTGTAGTAGA+AGG | + | chr4_2:70605161-70605180 | Msa0619510:five_prime_UTR | 35.0% | |
GTTGAAAGAGACATGAATGA+GGG | - | chr4_2:70605203-70605222 | None:intergenic | 35.0% | |
AGTTGAAAGAGACATGAATG+AGG | - | chr4_2:70605204-70605223 | None:intergenic | 35.0% | |
GTTATGAAGCTTCCCAAATA+AGG | - | chr4_2:70605424-70605443 | None:intergenic | 35.0% | |
ATACAGAAACTCATAACCAC+TGG | - | chr4_2:70605643-70605662 | None:intergenic | 35.0% | |
! | AAGATTTTCTGATGAACAGG+TGG | + | chr4_2:70605847-70605866 | Msa0619510:intron | 35.0% |
! | CAATTTTACTCACTGTCACA+TGG | + | chr4_2:70605939-70605958 | Msa0619510:intron | 35.0% |
TCTTTCACAATTCAGTCTTG+TGG | + | chr4_2:70605987-70606006 | Msa0619510:intron | 35.0% | |
! | CTTTCACAATTCAGTCTTGT+GGG | + | chr4_2:70605988-70606007 | Msa0619510:intron | 35.0% |
!! | AAAATCTCGGTGTTTGTTGA+AGG | + | chr4_2:70606059-70606078 | Msa0619510:intron | 35.0% |
TCTAGGCTACATGAAAACAA+TGG | + | chr4_2:70606337-70606356 | Msa0619510:intron | 35.0% | |
!!! | AGTTCGCTTTTTAAGCATTC+AGG | + | chr4_2:70606392-70606411 | Msa0619510:intron | 35.0% |
TTTGTTGCAATGAATCTGCT+CGG | + | chr4_2:70606417-70606436 | Msa0619510:intron | 35.0% | |
GGTGTACTAACTTCTTCAAT+TGG | - | chr4_2:70606627-70606646 | None:intergenic | 35.0% | |
AATTAGTGCCAAAGAAGACA+TGG | + | chr4_2:70606716-70606735 | Msa0619510:CDS | 35.0% | |
TGTCTCAGGTATTTACTGTT+TGG | + | chr4_2:70606770-70606789 | Msa0619510:intron | 35.0% | |
TCAATAAATTTGCCCTGGTT+TGG | + | chr4_2:70606882-70606901 | Msa0619510:intron | 35.0% | |
!! | ATTTTATTTAGGCTGGGAGA+AGG | + | chr4_2:70607223-70607242 | Msa0619510:intron | 35.0% |
ACAGATAACATTTCAGATGG+TGG | + | chr4_2:70607797-70607816 | Msa0619510:CDS | 35.0% | |
TTCAACTGAGATCAATCTCA+TGG | + | chr4_2:70607931-70607950 | Msa0619510:CDS | 35.0% | |
ATGATTTCCTTGAGATGGAA+AGG | + | chr4_2:70607954-70607973 | Msa0619510:CDS | 35.0% | |
GATCAATCTATTGTTGGTCA+AGG | + | chr4_2:70608037-70608056 | Msa0619510:CDS | 35.0% | |
TATTGTTGGTCAAGGTACAA+TGG | + | chr4_2:70608045-70608064 | Msa0619510:CDS | 35.0% | |
GATTGAAAAGAATGCCGAAT+TGG | + | chr4_2:70608087-70608106 | Msa0619510:CDS | 35.0% | |
! | ACTGAAATTTGCTCAAACTG+AGG | + | chr4_2:70608327-70608346 | Msa0619510:CDS | 35.0% |
ATTGGAGGAAGAGATTCAAA+AGG | + | chr4_2:70608378-70608397 | Msa0619510:CDS | 35.0% | |
AACAGCAACACAAAGGAATT+GGG | - | chr4_2:70608865-70608884 | None:intergenic | 35.0% | |
AAACAGCAACACAAAGGAAT+TGG | - | chr4_2:70608866-70608885 | None:intergenic | 35.0% | |
!!! | CAAGAGATGCAATGGTTTTT+TGG | - | chr4_2:70609084-70609103 | None:intergenic | 35.0% |
CAAAAAACCATTGCATCTCT+TGG | + | chr4_2:70609082-70609101 | Msa0619510:CDS | 35.0% | |
CTTCACAAGTTAACTCCATA+GGG | - | chr4_2:70609165-70609184 | None:intergenic | 35.0% | |
ACTTCACAAGTTAACTCCAT+AGG | - | chr4_2:70609166-70609185 | None:intergenic | 35.0% | |
GAAAAGGAGACAAGATGATA+AGG | + | chr4_2:70609361-70609380 | Msa0619510:three_prime_UTR | 35.0% | |
! | TTTTGAATCCTTGGGATGGT+AGG | + | chr4_2:70605242-70605261 | Msa0619510:intron | 40.0% |
! | TAGATTTTACGCAGATCCAG+TGG | + | chr4_2:70605624-70605643 | Msa0619510:intron | 40.0% |
ATCATTTGAGGGAGTGAGTT+AGG | + | chr4_2:70605687-70605706 | Msa0619510:five_prime_UTR | 40.0% | |
!! | TGGCTGTGTTTTAAATGGAC+AGG | + | chr4_2:70605741-70605760 | Msa0619510:exon | 40.0% |
!! | CTGTGTTTTAAATGGACAGG+AGG | + | chr4_2:70605744-70605763 | Msa0619510:exon | 40.0% |
TTTAAATGGACAGGAGGAGT+TGG | + | chr4_2:70605750-70605769 | Msa0619510:exon | 40.0% | |
TTACTCACTGTCACATGGTT+TGG | + | chr4_2:70605944-70605963 | Msa0619510:intron | 40.0% | |
TACTCACTGTCACATGGTTT+GGG | + | chr4_2:70605945-70605964 | Msa0619510:intron | 40.0% | |
! | AAAAATTGAGGGCGTGAATG+TGG | + | chr4_2:70606092-70606111 | Msa0619510:intron | 40.0% |
TGTTGCAGACATTGTGAAAC+AGG | + | chr4_2:70606141-70606160 | Msa0619510:intron | 40.0% | |
GACAACGAGAGCAATTATTC+CGG | - | chr4_2:70606287-70606306 | None:intergenic | 40.0% | |
TACCTTCACAGTTACAGCAT+GGG | - | chr4_2:70606556-70606575 | None:intergenic | 40.0% | |
ATACCTTCACAGTTACAGCA+TGG | - | chr4_2:70606557-70606576 | None:intergenic | 40.0% | |
CTAACTTCTTCAATTGGTGC+AGG | - | chr4_2:70606621-70606640 | None:intergenic | 40.0% | |
CTGCTTTACCATGTCTTCTT+TGG | - | chr4_2:70606727-70606746 | None:intergenic | 40.0% | |
! | TGCTTCTTTTTGCTTGTCCA+TGG | + | chr4_2:70607092-70607111 | Msa0619510:intron | 40.0% |
AGTTATTTGCCACAGCTTCA+TGG | - | chr4_2:70607400-70607419 | None:intergenic | 40.0% | |
GGCAAATAACTCACATGACT+CGG | + | chr4_2:70607409-70607428 | Msa0619510:CDS | 40.0% | |
GCAAATAACTCACATGACTC+GGG | + | chr4_2:70607410-70607429 | Msa0619510:CDS | 40.0% | |
TCTCTCAAGTTCGAATCTTC+TGG | - | chr4_2:70607438-70607457 | None:intergenic | 40.0% | |
! | ATCAAGTCTCCTCTGAAGAT+CGG | - | chr4_2:70607525-70607544 | None:intergenic | 40.0% |
GACTTGAGGAACTAGAATTC+AGG | + | chr4_2:70607591-70607610 | Msa0619510:CDS | 40.0% | |
TAGAATTCAGGATTGCAGAG+AGG | + | chr4_2:70607603-70607622 | Msa0619510:CDS | 40.0% | |
AGAATTCAGGATTGCAGAGA+GGG | + | chr4_2:70607604-70607623 | Msa0619510:CDS | 40.0% | |
!! | AAATTTGGAGAGCACCAAGA+AGG | + | chr4_2:70607664-70607683 | Msa0619510:CDS | 40.0% |
TTCAAGCTTAGCAACCTTCT+TGG | - | chr4_2:70607681-70607700 | None:intergenic | 40.0% | |
GAGTCATGGATTTCAGTCTA+CGG | - | chr4_2:70607712-70607731 | None:intergenic | 40.0% | |
CATGGATGATTTCCTTGAGA+TGG | + | chr4_2:70607949-70607968 | Msa0619510:CDS | 40.0% | |
AGTGGAAGCCGTTATGTTAA+TGG | + | chr4_2:70608001-70608020 | Msa0619510:CDS | 40.0% | |
CTCGTCCTCCATTAACATAA+CGG | - | chr4_2:70608012-70608031 | None:intergenic | 40.0% | |
TGTTAATGGAGGACGAGTAT+TGG | + | chr4_2:70608015-70608034 | Msa0619510:CDS | 40.0% | |
AGGTACAATGGAAGCTGAAA+TGG | + | chr4_2:70608057-70608076 | Msa0619510:CDS | 40.0% | |
! | CTCCAGCTTCTTTTCCAATT+CGG | - | chr4_2:70608104-70608123 | None:intergenic | 40.0% |
GGAAAAGAAGCTGGAGAAAA+TGG | + | chr4_2:70608108-70608127 | Msa0619510:CDS | 40.0% | |
AAAGAAGCTGGAGAAAATGG+AGG | + | chr4_2:70608111-70608130 | Msa0619510:CDS | 40.0% | |
AGCTCGAGAAATCAGAGAAT+CGG | + | chr4_2:70608179-70608198 | Msa0619510:CDS | 40.0% | |
GATAAGAGCAGCAGAATTGA+AGG | + | chr4_2:70608201-70608220 | Msa0619510:CDS | 40.0% | |
GAATCTCTTCCTCCAATGAA+TGG | - | chr4_2:70608375-70608394 | None:intergenic | 40.0% | |
CTGAGAATTCAATCAAGAGC+AGG | + | chr4_2:70608416-70608435 | Msa0619510:CDS | 40.0% | |
TTCAATCAAGAGCAGGAAGT+TGG | + | chr4_2:70608423-70608442 | Msa0619510:CDS | 40.0% | |
! | ATTTTCCTTGTGCAAAGTCC+TGG | - | chr4_2:70608497-70608516 | None:intergenic | 40.0% |
! | TCGCGATTTGAAGTCAAAAC+AGG | + | chr4_2:70608522-70608541 | Msa0619510:CDS | 40.0% |
TGCATTTGTAGTTTGGACTC+TGG | + | chr4_2:70608818-70608837 | Msa0619510:intron | 40.0% | |
ACAGCAACACAAAGGAATTG+GGG | - | chr4_2:70608864-70608883 | None:intergenic | 40.0% | |
TCAGGACAAAGAACTTGCAT+TGG | + | chr4_2:70609036-70609055 | Msa0619510:intron | 40.0% | |
GTTGAAGTCTCTTGCAACAT+TGG | + | chr4_2:70609111-70609130 | Msa0619510:CDS | 40.0% | |
ACACAACAAAGTCCCCAAAA+AGG | + | chr4_2:70609187-70609206 | Msa0619510:CDS | 40.0% | |
ACTCATGAGAAAAGCCGTAA+TGG | + | chr4_2:70609280-70609299 | Msa0619510:CDS | 40.0% | |
!! | GAGAAAAGCCGTAATGGATT+TGG | + | chr4_2:70609286-70609305 | Msa0619510:CDS | 40.0% |
TTCTTTCTCTCCCTTGCACA+TGG | + | chr4_2:70604924-70604943 | Msa0619510:five_prime_UTR | 45.0% | |
ATTACACACCTACCATCCCA+AGG | - | chr4_2:70605253-70605272 | None:intergenic | 45.0% | |
! | GTTATGGCGGAGAAAGTCAT+CGG | + | chr4_2:70605772-70605791 | Msa0619510:CDS | 45.0% |
AAGTCATCGGAGAAAAGTCC+AGG | + | chr4_2:70605785-70605804 | Msa0619510:CDS | 45.0% | |
CTCGGTCTGCAAATTTCTCA+TGG | + | chr4_2:70606366-70606385 | Msa0619510:intron | 45.0% | |
TTCCCATGCTGTAACTGTGA+AGG | + | chr4_2:70606551-70606570 | Msa0619510:intron | 45.0% | |
GGTGATAGAGTAGCTTGGAT+TGG | - | chr4_2:70606582-70606601 | None:intergenic | 45.0% | |
CTTCACAACCATCATGATCC+CGG | + | chr4_2:70607035-70607054 | Msa0619510:intron | 45.0% | |
TCCTAACTCCTAACGTGAAC+CGG | - | chr4_2:70607057-70607076 | None:intergenic | 45.0% | |
ATGATAGTCATGGCTTCCCA+AGG | - | chr4_2:70607131-70607150 | None:intergenic | 45.0% | |
ACCGAGTTAGTCACCTTGAT+GGG | + | chr4_2:70607315-70607334 | Msa0619510:CDS | 45.0% | |
CTGCCTCATACACTCTTTGA+GGG | - | chr4_2:70607342-70607361 | None:intergenic | 45.0% | |
! | CTTTTGCTCTTGCACTTCTC+TGG | - | chr4_2:70607375-70607394 | None:intergenic | 45.0% |
GCAAAAGATCCATGAAGCTG+TGG | + | chr4_2:70607388-70607407 | Msa0619510:CDS | 45.0% | |
GAGAAAAGTTGCTGAGCTTG+AGG | + | chr4_2:70607454-70607473 | Msa0619510:CDS | 45.0% | |
! | TACTAGCTGTTTCAGCAGCT+TGG | - | chr4_2:70607640-70607659 | None:intergenic | 45.0% |
GAACATGAGTCAGAACAGCT+TGG | - | chr4_2:70607842-70607861 | None:intergenic | 45.0% | |
GCTTTGCCAGATACAGAAAG+TGG | + | chr4_2:70607983-70608002 | Msa0619510:CDS | 45.0% | |
GGAAGCCGTTATGTTAATGG+AGG | + | chr4_2:70608004-70608023 | Msa0619510:CDS | 45.0% | |
TGCCGAATTGGAAAAGAAGC+TGG | + | chr4_2:70608099-70608118 | Msa0619510:CDS | 45.0% | |
CTGATTTCTCGAGCTGCATT+TGG | - | chr4_2:70608174-70608193 | None:intergenic | 45.0% | |
AATCAAGAGCAGGAAGTTGG+AGG | + | chr4_2:70608426-70608445 | Msa0619510:CDS | 45.0% | |
ATCAAGAGCAGGAAGTTGGA+GGG | + | chr4_2:70608427-70608446 | Msa0619510:CDS | 45.0% | |
CAGCAACACAAAGGAATTGG+GGG | - | chr4_2:70608863-70608882 | None:intergenic | 45.0% | |
CTGCTTTCCAAGAGATGCAA+TGG | - | chr4_2:70609092-70609111 | None:intergenic | 45.0% | |
GGCTGTTGTCTGAATCAAGT+AGG | - | chr4_2:70609144-70609163 | None:intergenic | 45.0% | |
TGATTCAGACAACAGCCCTA+TGG | + | chr4_2:70609147-70609166 | Msa0619510:CDS | 45.0% | |
CAACAAAGTCCCCAAAAAGG+AGG | + | chr4_2:70609190-70609209 | Msa0619510:CDS | 45.0% | |
! | AAGAAGCAAGAGTGTGAGCA+GGG | + | chr4_2:70609321-70609340 | Msa0619510:CDS | 45.0% |
TGAGAAGAGGATAGCATGCG+TGG | - | chr4_2:70604951-70604970 | None:intergenic | 50.0% | |
! | TGGACAGGAGGAGTTGGTTA+TGG | + | chr4_2:70605756-70605775 | Msa0619510:CDS | 50.0% |
! | ACAGGAGGAGTTGGTTATGG+CGG | + | chr4_2:70605759-70605778 | Msa0619510:CDS | 50.0% |
CTCGGTCTGCACATTCTTCA+TGG | + | chr4_2:70606435-70606454 | Msa0619510:intron | 50.0% | |
CCTCTGGTGATAGAGTAGCT+TGG | - | chr4_2:70606587-70606606 | None:intergenic | 50.0% | |
CCAAGCTACTCTATCACCAG+AGG | + | chr4_2:70606584-70606603 | Msa0619510:CDS | 50.0% | |
CGAATTAGCTGCAGCTCTGT+TGG | + | chr4_2:70606692-70606711 | Msa0619510:CDS | 50.0% | |
GTTGCTGAAGAAGCTGTCTC+AGG | + | chr4_2:70606756-70606775 | Msa0619510:CDS | 50.0% | |
AACGTGAACCGGGATCATGA+TGG | - | chr4_2:70607046-70607065 | None:intergenic | 50.0% | |
TCATGATCCCGGTTCACGTT+AGG | + | chr4_2:70607046-70607065 | Msa0619510:intron | 50.0% | |
CCTAACTCCTAACGTGAACC+GGG | - | chr4_2:70607056-70607075 | None:intergenic | 50.0% | |
GCTGCAAGACAGAAGAACTC+AGG | + | chr4_2:70607284-70607303 | Msa0619510:CDS | 50.0% | |
GGTGACTAACTCGGTCTTCA+AGG | - | chr4_2:70607310-70607329 | None:intergenic | 50.0% | |
GACCGAGTTAGTCACCTTGA+TGG | + | chr4_2:70607314-70607333 | Msa0619510:CDS | 50.0% | |
CCCCATCAAGGTGACTAACT+CGG | - | chr4_2:70607319-70607338 | None:intergenic | 50.0% | |
CCGAGTTAGTCACCTTGATG+GGG | + | chr4_2:70607316-70607335 | Msa0619510:CDS | 50.0% | |
GCTGCCTCATACACTCTTTG+AGG | - | chr4_2:70607343-70607362 | None:intergenic | 50.0% | |
CTATTCGCTCCGATCTTCAG+AGG | + | chr4_2:70607513-70607532 | Msa0619510:CDS | 50.0% | |
TCAGAGGAGACTTGATGCTG+TGG | + | chr4_2:70607529-70607548 | Msa0619510:CDS | 50.0% | |
GAGACTTGATGCTGTGGAGA+AGG | + | chr4_2:70607535-70607554 | Msa0619510:CDS | 50.0% | |
! | TGAGCTGCAATCTCGACTTG+AGG | + | chr4_2:70607577-70607596 | Msa0619510:CDS | 50.0% |
CAGCAAGCCTTTCCATCTCA+AGG | - | chr4_2:70607964-70607983 | None:intergenic | 50.0% | |
CGGCTTCCACTTTCTGTATC+TGG | - | chr4_2:70607992-70608011 | None:intergenic | 50.0% | |
CTCAAGTTCAGCAAGATGCC+AGG | + | chr4_2:70608476-70608495 | Msa0619510:CDS | 50.0% | |
AGATGCCAGGACTTTGCACA+AGG | + | chr4_2:70608489-70608508 | Msa0619510:CDS | 50.0% | |
GCTAGTCAACAGCAGCTTGT+CGG | - | chr4_2:70608752-70608771 | None:intergenic | 50.0% | |
! | GTAGTTTGGACTCTGGAAGC+AGG | + | chr4_2:70608825-70608844 | Msa0619510:intron | 50.0% |
CTGCTCACACTCTTGCTTCT+TGG | - | chr4_2:70609322-70609341 | None:intergenic | 50.0% | |
! | CAAGAAGCAAGAGTGTGAGC+AGG | + | chr4_2:70609320-70609339 | Msa0619510:CDS | 50.0% |
CATGCGTGGACCATGTGCAA+GGG | - | chr4_2:70604937-70604956 | None:intergenic | 55.0% | |
!!! | CTGCTGCTGGTGGTGGTTTT+TGG | + | chr4_2:70605721-70605740 | Msa0619510:five_prime_UTR | 55.0% |
GGAGAAAAGTCCAGGCGAGA+CGG | + | chr4_2:70605793-70605812 | Msa0619510:CDS | 55.0% | |
GCAGGCTTAGATGTGACCTC+TGG | - | chr4_2:70606603-70606622 | None:intergenic | 55.0% | |
CCCGGTTCACGTTAGGAGTT+AGG | + | chr4_2:70607053-70607072 | Msa0619510:intron | 55.0% | |
CTGGGAGAAGGCTGAAAACG+AGG | + | chr4_2:70607235-70607254 | Msa0619510:CDS | 55.0% | |
! | ACTCTTTGAGGGCCCCATCA+AGG | - | chr4_2:70607331-70607350 | None:intergenic | 55.0% |
! | GGGCCCTCAAAGAGTGTATG+AGG | + | chr4_2:70607336-70607355 | Msa0619510:CDS | 55.0% |
GCTCTTGCACTTCTCTGGCT+TGG | - | chr4_2:70607370-70607389 | None:intergenic | 55.0% | |
AGCAGCTTGTCGGTAGTCGA+CGG | - | chr4_2:70608742-70608761 | None:intergenic | 55.0% | |
GCATGCGTGGACCATGTGCA+AGG | - | chr4_2:70604938-70604957 | None:intergenic | 60.0% | |
! | GGTGATTGTGCTGCTGCTGC+TGG | + | chr4_2:70605708-70605727 | Msa0619510:five_prime_UTR | 60.0% |
! | GATTGTGCTGCTGCTGCTGG+TGG | + | chr4_2:70605711-70605730 | Msa0619510:five_prime_UTR | 60.0% |
! | TGTGCTGCTGCTGCTGGTGG+TGG | + | chr4_2:70605714-70605733 | Msa0619510:five_prime_UTR | 65.0% |
CCTGAACTCTCCGTCTCGCC+TGG | - | chr4_2:70605806-70605825 | None:intergenic | 65.0% | |
CCAGGCGAGACGGAGAGTTC+AGG | + | chr4_2:70605803-70605822 | Msa0619510:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 70604833 | 70609606 | 70604833 | ID=Msa0619510;Name=Msa0619510 |
chr4_2 | mRNA | 70604833 | 70609606 | 70604833 | ID=Msa0619510-mRNA-1;Parent=Msa0619510;Name=Msa0619510-mRNA-1;_AED=0.12;_eAED=0.12;_QI=423|0.6|0.83|0.83|0.8|0.66|6|255|656 |
chr4_2 | exon | 70604833 | 70605182 | 70604833 | ID=Msa0619510-mRNA-1:exon:20658;Parent=Msa0619510-mRNA-1 |
chr4_2 | exon | 70605682 | 70605865 | 70605682 | ID=Msa0619510-mRNA-1:exon:20659;Parent=Msa0619510-mRNA-1 |
chr4_2 | exon | 70606280 | 70606312 | 70606280 | ID=Msa0619510-mRNA-1:exon:20660;Parent=Msa0619510-mRNA-1 |
chr4_2 | exon | 70606573 | 70606777 | 70606573 | ID=Msa0619510-mRNA-1:exon:20661;Parent=Msa0619510-mRNA-1 |
chr4_2 | exon | 70607234 | 70608543 | 70607234 | ID=Msa0619510-mRNA-1:exon:20662;Parent=Msa0619510-mRNA-1 |
chr4_2 | exon | 70609040 | 70609606 | 70609040 | ID=Msa0619510-mRNA-1:exon:20663;Parent=Msa0619510-mRNA-1 |
chr4_2 | five_prime_UTR | 70604833 | 70605182 | 70604833 | ID=Msa0619510-mRNA-1:five_prime_utr;Parent=Msa0619510-mRNA-1 |
chr4_2 | five_prime_UTR | 70605682 | 70605754 | 70605682 | ID=Msa0619510-mRNA-1:five_prime_utr;Parent=Msa0619510-mRNA-1 |
chr4_2 | CDS | 70605755 | 70605865 | 70605755 | ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1 |
chr4_2 | CDS | 70606280 | 70606312 | 70606280 | ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1 |
chr4_2 | CDS | 70606573 | 70606777 | 70606573 | ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1 |
chr4_2 | CDS | 70607234 | 70608543 | 70607234 | ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1 |
chr4_2 | CDS | 70609040 | 70609351 | 70609040 | ID=Msa0619510-mRNA-1:cds;Parent=Msa0619510-mRNA-1 |
chr4_2 | three_prime_UTR | 70609352 | 70609606 | 70609352 | ID=Msa0619510-mRNA-1:three_prime_utr;Parent=Msa0619510-mRNA-1 |
Gene Sequence |
Protein sequence |