Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197520 | XP_003594195.1 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 9.99e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197520 | sp|O49636|MPC4_ARATH | 86.000 | 100 | 14 | 0 | 1 | 100 | 1 | 100 | 2.20e-63 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197520 | Q2HVG1 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 4.77e-72 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0197520 | 0.825867 | 3.707987e-54 | -8.615850e-47 |
| Msa0010490 | Msa0197520 | 0.807704 | 4.438806e-50 | -8.615850e-47 |
| Msa0010500 | Msa0197520 | 0.814588 | 1.427292e-51 | -8.615850e-47 |
| Msa0018620 | Msa0197520 | 0.820532 | 6.525962e-53 | -8.615850e-47 |
| Msa0032260 | Msa0197520 | 0.824645 | 7.212853e-54 | -8.615850e-47 |
| Msa0035130 | Msa0197520 | 0.824234 | 9.012945e-54 | -8.615850e-47 |
| Msa0040690 | Msa0197520 | 0.824422 | 8.142305e-54 | -8.615850e-47 |
| Msa0048180 | Msa0197520 | 0.805609 | 1.229216e-49 | -8.615850e-47 |
| Msa0049780 | Msa0197520 | 0.814222 | 1.719461e-51 | -8.615850e-47 |
| Msa0052610 | Msa0197520 | 0.831770 | 1.382504e-55 | -8.615850e-47 |
| Msa0055150 | Msa0197520 | 0.847428 | 1.163457e-59 | -8.615850e-47 |
| Msa0067870 | Msa0197520 | 0.817800 | 2.732932e-52 | -8.615850e-47 |
| Msa0076000 | Msa0197520 | 0.815051 | 1.126814e-51 | -8.615850e-47 |
| Msa0077540 | Msa0197520 | 0.820101 | 8.195413e-53 | -8.615850e-47 |
| Msa0077880 | Msa0197520 | 0.816788 | 4.617068e-52 | -8.615850e-47 |
| Msa0100800 | Msa0197520 | 0.820306 | 7.353776e-53 | -8.615850e-47 |
| Msa0118000 | Msa0197520 | 0.811755 | 5.973337e-51 | -8.615850e-47 |
| Msa0121820 | Msa0197520 | 0.844343 | 8.016140e-59 | -8.615850e-47 |
| Msa0125770 | Msa0197520 | 0.820348 | 7.193914e-53 | -8.615850e-47 |
| Msa0126880 | Msa0197520 | 0.803922 | 2.766582e-49 | -8.615850e-47 |
| Msa0127310 | Msa0197520 | 0.809778 | 1.599514e-50 | -8.615850e-47 |
| Msa0127850 | Msa0197520 | 0.808962 | 2.393133e-50 | -8.615850e-47 |
| Msa0166750 | Msa0197520 | 0.830040 | 3.672672e-55 | -8.615850e-47 |
| Msa0167480 | Msa0197520 | 0.809076 | 2.262373e-50 | -8.615850e-47 |
| Msa0170410 | Msa0197520 | 0.807494 | 4.918438e-50 | -8.615850e-47 |
| Msa0181230 | Msa0197520 | 0.803286 | 3.747820e-49 | -8.615850e-47 |
| Msa0186890 | Msa0197520 | 0.825932 | 3.579401e-54 | -8.615850e-47 |
| Msa0188350 | Msa0197520 | 0.811489 | 6.825364e-51 | -8.615850e-47 |
| Msa0192480 | Msa0197520 | 0.807516 | 4.865172e-50 | -8.615850e-47 |
| Msa0194540 | Msa0197520 | 0.802787 | 4.753195e-49 | -8.615850e-47 |
| Msa0197510 | Msa0197520 | 0.805053 | 1.607431e-49 | -8.615850e-47 |
| Msa0197520 | Msa0197530 | 0.807546 | 4.795858e-50 | -8.615850e-47 |
| Msa0197520 | Msa0197780 | 0.813356 | 2.668294e-51 | -8.615850e-47 |
| Msa0197520 | Msa0223230 | 0.808512 | 2.985858e-50 | -8.615850e-47 |
| Msa0197520 | Msa0227400 | 0.808540 | 2.945986e-50 | -8.615850e-47 |
| Msa0197520 | Msa0229360 | 0.806200 | 9.232544e-50 | -8.615850e-47 |
| Msa0197520 | Msa0231880 | 0.832819 | 7.602663e-56 | -8.615850e-47 |
| Msa0197520 | Msa0241190 | 0.825404 | 4.775060e-54 | -8.615850e-47 |
| Msa0197520 | Msa0262480 | 0.805417 | 1.348692e-49 | -8.615850e-47 |
| Msa0197520 | Msa0267780 | 0.802525 | 5.383282e-49 | -8.615850e-47 |
| Msa0197520 | Msa0270170 | -0.803601 | 3.225708e-49 | -8.615850e-47 |
| Msa0197520 | Msa0291520 | 0.824062 | 9.890966e-54 | -8.615850e-47 |
| Msa0197520 | Msa0304590 | 0.802464 | 5.541631e-49 | -8.615850e-47 |
| Msa0197520 | Msa0304660 | 0.805145 | 1.537316e-49 | -8.615850e-47 |
| Msa0197520 | Msa0316910 | 0.908834 | 1.108157e-81 | -8.615850e-47 |
| Msa0197520 | Msa0331700 | 0.806213 | 9.176331e-50 | -8.615850e-47 |
| Msa0197520 | Msa0347680 | 0.808700 | 2.722647e-50 | -8.615850e-47 |
| Msa0197520 | Msa0355270 | 0.804087 | 2.555692e-49 | -8.615850e-47 |
| Msa0197520 | Msa0367470 | 0.806609 | 7.569599e-50 | -8.615850e-47 |
| Msa0197520 | Msa0384880 | 0.826408 | 2.757715e-54 | -8.615850e-47 |
| Msa0197520 | Msa0386920 | 0.812488 | 4.134396e-51 | -8.615850e-47 |
| Msa0197520 | Msa0402330 | 0.803903 | 2.790863e-49 | -8.615850e-47 |
| Msa0197520 | Msa0423750 | 0.807910 | 4.013102e-50 | -8.615850e-47 |
| Msa0197520 | Msa0431770 | 0.815309 | 9.878077e-52 | -8.615850e-47 |
| Msa0197520 | Msa0526540 | 0.820526 | 6.546049e-53 | -8.615850e-47 |
| Msa0197520 | Msa0526890 | 0.802247 | 6.141195e-49 | -8.615850e-47 |
| Msa0197520 | Msa0527020 | 0.822324 | 2.518194e-53 | -8.615850e-47 |
| Msa0197520 | Msa0532980 | 0.805845 | 1.096570e-49 | -8.615850e-47 |
| Msa0197520 | Msa0541860 | 0.824317 | 8.619930e-54 | -8.615850e-47 |
| Msa0197520 | Msa0545060 | 0.819180 | 1.329918e-52 | -8.615850e-47 |
| Msa0197520 | Msa0556790 | 0.805055 | 1.605482e-49 | -8.615850e-47 |
| Msa0197520 | Msa0561430 | 0.805949 | 1.042672e-49 | -8.615850e-47 |
| Msa0197520 | Msa0576940 | 0.814422 | 1.552886e-51 | -8.615850e-47 |
| Msa0197520 | Msa0578090 | 0.809944 | 1.473054e-50 | -8.615850e-47 |
| Msa0197520 | Msa0581070 | 0.816382 | 5.690736e-52 | -8.615850e-47 |
| Msa0197520 | Msa0600600 | 0.811364 | 7.265692e-51 | -8.615850e-47 |
| Msa0197520 | Msa0615440 | 0.831822 | 1.342536e-55 | -8.615850e-47 |
| Msa0197520 | Msa0633760 | 0.805308 | 1.421361e-49 | -8.615850e-47 |
| Msa0197520 | Msa0641140 | 0.805377 | 1.374703e-49 | -8.615850e-47 |
| Msa0197520 | Msa0641670 | 0.804486 | 2.110617e-49 | -8.615850e-47 |
| Msa0197520 | Msa0654870 | 0.803521 | 3.350239e-49 | -8.615850e-47 |
| Msa0197520 | Msa0664760 | 0.801627 | 8.234430e-49 | -8.615850e-47 |
| Msa0197520 | Msa0666230 | 0.800895 | 1.163033e-48 | -8.615850e-47 |
| Msa0197520 | Msa0680240 | 0.800768 | 1.234339e-48 | -8.615850e-47 |
| Msa0197520 | Msa0687630 | 0.810128 | 1.344312e-50 | -8.615850e-47 |
| Msa0197520 | Msa0698490 | 0.828691 | 7.807944e-55 | -8.615850e-47 |
| Msa0197520 | Msa0698660 | 0.832460 | 9.333004e-56 | -8.615850e-47 |
| Msa0197520 | Msa0703230 | 0.824949 | 6.117105e-54 | -8.615850e-47 |
| Msa0197520 | Msa0704660 | 0.803288 | 3.744190e-49 | -8.615850e-47 |
| Msa0197520 | Msa0705820 | 0.800112 | 1.678724e-48 | -8.615850e-47 |
| Msa0197520 | Msa0707390 | 0.811113 | 8.234357e-51 | -8.615850e-47 |
| Msa0197520 | Msa0744090 | 0.804312 | 2.294632e-49 | -8.615850e-47 |
| Msa0197520 | Msa0744100 | 0.806062 | 9.873789e-50 | -8.615850e-47 |
| Msa0197520 | Msa0750920 | 0.830142 | 3.469330e-55 | -8.615850e-47 |
| Msa0197520 | Msa0794050 | 0.802381 | 5.762809e-49 | -8.615850e-47 |
| Msa0197520 | Msa0819540 | 0.810971 | 8.840297e-51 | -8.615850e-47 |
| Msa0197520 | Msa0825270 | 0.808375 | 3.195177e-50 | -8.615850e-47 |
| Msa0197520 | Msa0825280 | 0.809922 | 1.489311e-50 | -8.615850e-47 |
| Msa0197520 | Msa0879080 | 0.809705 | 1.658160e-50 | -8.615850e-47 |
| Msa0197520 | Msa0943170 | 0.810606 | 1.060442e-50 | -8.615850e-47 |
| Msa0197520 | Msa0963020 | 0.807115 | 5.918381e-50 | -8.615850e-47 |
| Msa0197520 | Msa0970420 | 0.811693 | 6.162624e-51 | -8.615850e-47 |
| Msa0197520 | Msa1000930 | 0.800632 | 1.315790e-48 | -8.615850e-47 |
| Msa0197520 | Msa1006840 | 0.809594 | 1.751456e-50 | -8.615850e-47 |
| Msa0197520 | Msa1019240 | 0.803669 | 3.121648e-49 | -8.615850e-47 |
| Msa0197520 | Msa1019260 | 0.803121 | 4.054107e-49 | -8.615850e-47 |
| Msa0197520 | Msa1025260 | 0.854043 | 1.600499e-61 | -8.615850e-47 |
| Msa0197520 | Msa1025940 | 0.804535 | 2.062044e-49 | -8.615850e-47 |
| Msa0197520 | Msa1033660 | 0.814112 | 1.818970e-51 | -8.615850e-47 |
| Msa0197520 | Msa1041520 | 0.815015 | 1.147952e-51 | -8.615850e-47 |
| Msa0197520 | Msa1070390 | 0.804686 | 1.917418e-49 | -8.615850e-47 |
| Msa0197520 | Msa1073490 | 0.838064 | 3.589939e-57 | -8.615850e-47 |
| Msa0197520 | Msa1081560 | 0.820846 | 5.526379e-53 | -8.615850e-47 |
| Msa0197520 | Msa1083210 | 0.805852 | 1.092900e-49 | -8.615850e-47 |
| Msa0197520 | Msa1104140 | 0.803995 | 2.670722e-49 | -8.615850e-47 |
| Msa0197520 | Msa1104210 | 0.807049 | 6.111099e-50 | -8.615850e-47 |
| Msa0197520 | Msa1109350 | 0.849365 | 3.389067e-60 | -8.615850e-47 |
| Msa0197520 | Msa1124070 | 0.803626 | 3.187320e-49 | -8.615850e-47 |
| Msa0197520 | Msa1126770 | 0.806889 | 6.607441e-50 | -8.615850e-47 |
| Msa0197520 | Msa1127190 | 0.803012 | 4.269966e-49 | -8.615850e-47 |
| Msa0197520 | Msa1127830 | 0.828044 | 1.118724e-54 | -8.615850e-47 |
| Msa0197520 | Msa1131560 | 0.826458 | 2.683462e-54 | -8.615850e-47 |
| Msa0197520 | Msa1135890 | 0.809430 | 1.899722e-50 | -8.615850e-47 |
| Msa0197520 | Msa1145240 | 0.839219 | 1.805823e-57 | -8.615850e-47 |
| Msa0197520 | Msa1166410 | 0.818477 | 1.920630e-52 | -8.615850e-47 |
| Msa0197520 | Msa1166870 | 0.831797 | 1.361564e-55 | -8.615850e-47 |
| Msa0197520 | Msa1207730 | 0.824259 | 8.891206e-54 | -8.615850e-47 |
| Msa0197520 | Msa1208890 | -0.811336 | 7.366728e-51 | -8.615850e-47 |
| Msa0197520 | Msa1219000 | 0.819153 | 1.348691e-52 | -8.615850e-47 |
| Msa0197520 | Msa1227690 | 0.822327 | 2.513959e-53 | -8.615850e-47 |
| Msa0197520 | Msa1245940 | -0.802771 | 4.790501e-49 | -8.615850e-47 |
| Msa0197520 | Msa1254710 | 0.815567 | 8.652068e-52 | -8.615850e-47 |
| Msa0197520 | Msa1259070 | -0.803272 | 3.773531e-49 | -8.615850e-47 |
| Msa0197520 | Msa1262890 | 0.811456 | 6.936782e-51 | -8.615850e-47 |
| Msa0197520 | Msa1294840 | 0.801380 | 9.253135e-49 | -8.615850e-47 |
| Msa0197520 | Msa1310690 | 0.815641 | 8.331153e-52 | -8.615850e-47 |
| Msa0197520 | Msa1311960 | 0.800397 | 1.469241e-48 | -8.615850e-47 |
| Msa0197520 | Msa1329540 | 0.801946 | 7.081993e-49 | -8.615850e-47 |
| Msa0197520 | Msa1332760 | 0.806798 | 6.906707e-50 | -8.615850e-47 |
| Msa0197520 | Msa1333560 | 0.813323 | 2.713245e-51 | -8.615850e-47 |
| Msa0197520 | Msa1345450 | 0.800274 | 1.556111e-48 | -8.615850e-47 |
| Msa0197520 | Msa1349100 | 0.803561 | 3.287285e-49 | -8.615850e-47 |
| Msa0197520 | Msa1355700 | 0.817020 | 4.094300e-52 | -8.615850e-47 |
| Msa0197520 | Msa1360980 | 0.803788 | 2.949904e-49 | -8.615850e-47 |
| Msa0197520 | Msa1363330 | 0.817999 | 2.463588e-52 | -8.615850e-47 |
| Msa0197520 | Msa1365150 | 0.802072 | 6.671932e-49 | -8.615850e-47 |
| Msa0197520 | Msa1365600 | 0.812425 | 4.267326e-51 | -8.615850e-47 |
| Msa0197520 | Msa1380970 | 0.802997 | 4.300756e-49 | -8.615850e-47 |
| Msa0197520 | Msa1381480 | 0.821637 | 3.631572e-53 | -8.615850e-47 |
| Msa0197520 | Msa1386600 | 0.818253 | 2.158591e-52 | -8.615850e-47 |
| Msa0197520 | Msa1400610 | -0.809336 | 1.989856e-50 | -8.615850e-47 |
| Msa0197520 | Msa1404190 | 0.803004 | 4.286638e-49 | -8.615850e-47 |
| Msa0197520 | Msa1408010 | 0.811839 | 5.728240e-51 | -8.615850e-47 |
| Msa0197520 | Msa1442850 | 0.820832 | 5.568557e-53 | -8.615850e-47 |
| Msa0197520 | Msa1447180 | 0.831697 | 1.441059e-55 | -8.615850e-47 |
| Msa0197520 | Msa1465680 | 0.813453 | 2.540554e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197520 | MtrunA17_Chr2g0289651 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 9.19e-76 | 218 |
| Msa0197520 | MtrunA17_Chr2g0289641 | 68.868 | 106 | 33 | 0 | 1 | 106 | 1 | 106 | 8.17e-55 | 166 |
| Msa0197520 | MtrunA17_Chr1g0210881 | 36.634 | 101 | 64 | 0 | 6 | 106 | 4 | 104 | 1.47e-18 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197520 | AT4G22310.1 | 86.000 | 100 | 14 | 0 | 1 | 100 | 1 | 100 | 2.23e-64 | 190 |
| Msa0197520 | AT4G14695.3 | 77.778 | 108 | 22 | 1 | 1 | 106 | 1 | 108 | 1.97e-60 | 180 |
| Msa0197520 | AT4G14695.1 | 77.778 | 108 | 22 | 1 | 1 | 106 | 1 | 108 | 1.97e-60 | 180 |
| Msa0197520 | AT4G05590.1 | 80.000 | 100 | 20 | 0 | 1 | 100 | 1 | 100 | 5.84e-60 | 179 |
| Msa0197520 | AT4G05590.2 | 57.971 | 138 | 20 | 1 | 1 | 100 | 1 | 138 | 9.31e-53 | 162 |
| Msa0197520 | AT4G05590.3 | 88.406 | 69 | 8 | 0 | 1 | 69 | 1 | 69 | 1.50e-42 | 134 |
| Msa0197520 | AT4G14695.2 | 61.111 | 108 | 22 | 2 | 1 | 106 | 1 | 90 | 4.74e-41 | 130 |
| Msa0197520 | AT5G20090.2 | 41.121 | 107 | 62 | 1 | 1 | 106 | 1 | 107 | 2.76e-22 | 84.3 |
| Msa0197520 | AT5G20090.1 | 41.121 | 107 | 62 | 1 | 1 | 106 | 1 | 107 | 2.76e-22 | 84.3 |
| Msa0197520 | AT5G20090.4 | 41.121 | 107 | 62 | 1 | 1 | 106 | 1 | 107 | 2.76e-22 | 84.3 |
| Msa0197520 | AT5G20090.3 | 41.489 | 94 | 55 | 0 | 1 | 94 | 1 | 94 | 6.38e-21 | 80.5 |
Find 37 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAAATAAATAAATAAAA+AGG | 0.191542 | 2_1:+15527492 | None:intergenic |
| ATATATTTGAAATTTCATTT+TGG | 0.208618 | 2_1:-15527563 | Msa0197520:three_prime_UTR |
| TCGAAGTAACTCACTGGTTT+TGG | 0.211024 | 2_1:+15530726 | None:intergenic |
| CTTCAAAGCTTCAAGCATTC+TGG | 0.222791 | 2_1:-15530765 | Msa0197520:CDS |
| GAACGATTAAATTCATTTCA+TGG | 0.308798 | 2_1:-15530791 | Msa0197520:exon |
| TATCAAGTTATTTGTGTACT+TGG | 0.339842 | 2_1:-15527621 | Msa0197520:three_prime_UTR |
| CTTTCCTATCCTCAACAAAT+AGG | 0.357519 | 2_1:-15529201 | Msa0197520:intron |
| TTGCAACGTTCACAGCAAAA+AGG | 0.357937 | 2_1:+15528146 | None:intergenic |
| TGAGGATAGGAAAGCTTCTC+TGG | 0.382144 | 2_1:+15529210 | None:intergenic |
| ATTTGCGTGACAGTTGGTAT+AGG | 0.405723 | 2_1:+15528110 | None:intergenic |
| GACACAGCTGTTACAGCTAC+TGG | 0.418439 | 2_1:-15528968 | Msa0197520:intron |
| TTACAGCTACTGGACTTATC+TGG | 0.420347 | 2_1:-15528958 | Msa0197520:CDS |
| CAAAAGCACAGGTCTTAACT+TGG | 0.425631 | 2_1:+15527426 | None:intergenic |
| CAACATGAAAATTGCAATCC+AGG | 0.446735 | 2_1:+15527589 | None:intergenic |
| AACGTTGCAATGGCAGGAAC+TGG | 0.478710 | 2_1:-15528133 | Msa0197520:CDS |
| TGTACTTGGAGCTCGATACC+TGG | 0.488738 | 2_1:-15527607 | Msa0197520:three_prime_UTR |
| CTGATACCCCACTTAAATGT+AGG | 0.491087 | 2_1:+15529264 | None:intergenic |
| AAATCGAATTCGCTTTCAAT+CGG | 0.497524 | 2_1:-15530829 | Msa0197520:five_prime_UTR |
| TTTGGGCACCTACATTTAAG+TGG | 0.501597 | 2_1:-15529272 | Msa0197520:CDS |
| CATACCTATTTGTTGAGGAT+AGG | 0.535886 | 2_1:+15529197 | None:intergenic |
| AGGGGATGAATTACGGCAGA+TGG | 0.539765 | 2_1:+15527512 | None:intergenic |
| TTGGGCACCTACATTTAAGT+GGG | 0.548150 | 2_1:-15529271 | Msa0197520:CDS |
| GCTGTGAACGTTGCAATGGC+AGG | 0.549298 | 2_1:-15528139 | Msa0197520:CDS |
| TGACATTCCTTCAAAAGCAC+AGG | 0.561077 | 2_1:+15527415 | None:intergenic |
| ATAATATAGTTTGCAAGTGG+TGG | 0.572798 | 2_1:-15530863 | Msa0197520:five_prime_UTR |
| ACCGCAATTTGCGTGACAGT+TGG | 0.573648 | 2_1:+15528104 | None:intergenic |
| GCATTCTGGAATCATCCAGC+TGG | 0.579572 | 2_1:-15530751 | Msa0197520:CDS |
| TGCAAAGAAGACTTGCAACA+AGG | 0.589459 | 2_1:+15527456 | None:intergenic |
| GCAAAGAAGACTTGCAACAA+GGG | 0.595189 | 2_1:+15527457 | None:intergenic |
| ACCAACTGTCACGCAAATTG+CGG | 0.595594 | 2_1:-15528105 | Msa0197520:intron |
| ATGCGCATACCTATTTGTTG+AGG | 0.604492 | 2_1:+15529192 | None:intergenic |
| GCAAGATTATTCGTCAGAGA+AGG | 0.608255 | 2_1:-15527679 | Msa0197520:CDS |
| CAAATAATATAGTTTGCAAG+TGG | 0.621929 | 2_1:-15530866 | Msa0197520:five_prime_UTR |
| GGATGAATTACGGCAGATGG+AGG | 0.622804 | 2_1:+15527515 | None:intergenic |
| GGATAGGAAAGCTTCTCTGG+TGG | 0.644326 | 2_1:+15529213 | None:intergenic |
| TGGGCACCTACATTTAAGTG+GGG | 0.659300 | 2_1:-15529270 | Msa0197520:CDS |
| GAATTCGCTTTCAATCGGAG+AGG | 0.716541 | 2_1:-15530824 | Msa0197520:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTGAAATTTCATTT+TGG | - | chr2_1:15530739-15530758 | Msa0197520:intron | 10.0% |
| !!! | TATATTTGAAATTTCATTTT+GGG | - | chr2_1:15530740-15530759 | Msa0197520:CDS | 10.0% |
| !! | AAAAGTCAAATTAAGTTAAT+CGG | + | chr2_1:15527758-15527777 | None:intergenic | 15.0% |
| !!! | TAACTTTGTATATATGATTT+TGG | + | chr2_1:15528501-15528520 | None:intergenic | 15.0% |
| !! | AAATCATATATACAAAGTTA+TGG | - | chr2_1:15528100-15528119 | Msa0197520:intron | 15.0% |
| !!! | TAACTTTGTATATATGATTT+TGG | - | chr2_1:15528501-15528520 | Msa0197520:intron | 15.0% |
| !!! | TTTTTAAGGTTTTTATTTCT+TGG | + | chr2_1:15529847-15529866 | None:intergenic | 15.0% |
| !! | TTAAGATACATATATAAGTA+TGG | + | chr2_1:15530584-15530603 | None:intergenic | 15.0% |
| !! | TTCATAAATAAAAACACGAA+TGG | + | chr2_1:15527621-15527640 | None:intergenic | 20.0% |
| !! | TTTGATTGCTTTGTAAAAAT+TGG | - | chr2_1:15527775-15527794 | Msa0197520:intron | 20.0% |
| !! | TTGATTGCTTTGTAAAAATT+GGG | - | chr2_1:15527776-15527795 | Msa0197520:intron | 20.0% |
| !!! | TAAAAATTGGGTCATTTTTA+GGG | - | chr2_1:15527788-15527807 | Msa0197520:intron | 20.0% |
| !! | ACTTATTATTATCAAAGATC+TGG | - | chr2_1:15527889-15527908 | Msa0197520:intron | 20.0% |
| !! | GATAAAAGTGGTTAAATATA+GGG | + | chr2_1:15528578-15528597 | None:intergenic | 20.0% |
| !! | TGATAAAAGTGGTTAAATAT+AGG | + | chr2_1:15528579-15528598 | None:intergenic | 20.0% |
| !! | AAGGATTTAATTGATAAAAG+TGG | + | chr2_1:15528590-15528609 | None:intergenic | 20.0% |
| !! | CCAAATTCAATAGAAATATT+AGG | + | chr2_1:15528675-15528694 | None:intergenic | 20.0% |
| !!! | CCTAATATTTCTATTGAATT+TGG | - | chr2_1:15528672-15528691 | Msa0197520:intron | 20.0% |
| !!! | AGAAATACACATTTTCAAAA+GGG | + | chr2_1:15529175-15529194 | None:intergenic | 20.0% |
| !! | TAGTATATATTCTCATGTAT+TGG | - | chr2_1:15529270-15529289 | Msa0197520:CDS | 20.0% |
| !! | AGTATATATTCTCATGTATT+GGG | - | chr2_1:15529271-15529290 | Msa0197520:CDS | 20.0% |
| !!! | AAGTTTTGTTGTTTTTTCAA+AGG | - | chr2_1:15529396-15529415 | Msa0197520:intron | 20.0% |
| !! | ATATTTCATGAACAAGTTAA+AGG | + | chr2_1:15529429-15529448 | None:intergenic | 20.0% |
| !! | ATGAAATATAGAAATACTAG+TGG | - | chr2_1:15529440-15529459 | Msa0197520:intron | 20.0% |
| !! | ACAATTAACTAAATGAACTT+TGG | - | chr2_1:15529955-15529974 | Msa0197520:intron | 20.0% |
| !!! | ATCTAGTTTATTTTCTTTAG+TGG | - | chr2_1:15530374-15530393 | Msa0197520:intron | 20.0% |
| !!! | TCTAGTTTATTTTCTTTAGT+GGG | - | chr2_1:15530375-15530394 | Msa0197520:intron | 20.0% |
| !! | AAGGTTAAACTACAAAATAA+AGG | + | chr2_1:15530497-15530516 | None:intergenic | 20.0% |
| !! | CAAATAATATAGTTTGCAAG+TGG | - | chr2_1:15527436-15527455 | Msa0197520:three_prime_UTR | 25.0% |
| ! | GAACGATTAAATTCATTTCA+TGG | - | chr2_1:15527511-15527530 | Msa0197520:three_prime_UTR | 25.0% |
| !!! | TCGTTGTTTTTCATTTGATA+TGG | - | chr2_1:15527642-15527661 | Msa0197520:three_prime_UTR | 25.0% |
| ! | CAAATCCAATAACTGTTATA+CGG | + | chr2_1:15527673-15527692 | None:intergenic | 25.0% |
| !!! | GTAAAAATTGGGTCATTTTT+AGG | - | chr2_1:15527787-15527806 | Msa0197520:intron | 25.0% |
| ! | GGAATTATAAACGAAATTGT+TGG | - | chr2_1:15527910-15527929 | Msa0197520:intron | 25.0% |
| ! | AAAGTAGAGGACTAATTTAT+TGG | + | chr2_1:15528000-15528019 | None:intergenic | 25.0% |
| !! | TATATACTGACTATCCAATT+AGG | - | chr2_1:15528320-15528339 | Msa0197520:intron | 25.0% |
| ! | GGTGAAAAATGTAATCTATT+TGG | + | chr2_1:15528890-15528909 | None:intergenic | 25.0% |
| !! | CAGAAATACACATTTTCAAA+AGG | + | chr2_1:15529176-15529195 | None:intergenic | 25.0% |
| !! | GTATTTCTGAATTCTTTGAA+AGG | - | chr2_1:15529187-15529206 | Msa0197520:intron | 25.0% |
| ! | ATTCCATAATTCATTCACTT+GGG | + | chr2_1:15529223-15529242 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAAAACTTAC+TGG | + | chr2_1:15529394-15529413 | None:intergenic | 25.0% |
| ! | TAACTAAGCAACAAAAAAAC+AGG | + | chr2_1:15529721-15529740 | None:intergenic | 25.0% |
| ! | TTACTATGTTGCAGAAAAAT+TGG | - | chr2_1:15530131-15530150 | Msa0197520:intron | 25.0% |
| ! | TTGAATCATAATGTAGCAAA+TGG | + | chr2_1:15530267-15530286 | None:intergenic | 25.0% |
| !!! | TTGTTGATGATATGTTAGTT+TGG | - | chr2_1:15530308-15530327 | Msa0197520:intron | 25.0% |
| !!! | TGTTTGAGTTTCCAATTTTT+GGG | + | chr2_1:15530345-15530364 | None:intergenic | 25.0% |
| ! | CTATAGAAAAAGAATGATGA+CGG | - | chr2_1:15530646-15530665 | Msa0197520:intron | 25.0% |
| ! | TATCAAGTTATTTGTGTACT+TGG | - | chr2_1:15530681-15530700 | Msa0197520:intron | 25.0% |
| ! | AATAAAAAGGGGATGAATTA+CGG | + | chr2_1:15530800-15530819 | None:intergenic | 25.0% |
| ! | ATAATATAGTTTGCAAGTGG+TGG | - | chr2_1:15527439-15527458 | Msa0197520:three_prime_UTR | 30.0% |
| AAATCGAATTCGCTTTCAAT+CGG | - | chr2_1:15527473-15527492 | Msa0197520:three_prime_UTR | 30.0% | |
| TACTTCCGTATAACAGTTAT+TGG | - | chr2_1:15527665-15527684 | Msa0197520:CDS | 30.0% | |
| CGTATAACAGTTATTGGATT+TGG | - | chr2_1:15527671-15527690 | Msa0197520:CDS | 30.0% | |
| ! | TTTTGATGCTTCATGAAACT+TGG | - | chr2_1:15527866-15527885 | Msa0197520:intron | 30.0% |
| AAATTAGTCCTCTACTTTGT+AGG | - | chr2_1:15528002-15528021 | Msa0197520:intron | 30.0% | |
| TTTCAAAATGCTTCTGATGT+TGG | - | chr2_1:15528056-15528075 | Msa0197520:intron | 30.0% | |
| CATGAAAGACAAACAAACTA+GGG | - | chr2_1:15528184-15528203 | Msa0197520:intron | 30.0% | |
| ! | ATCGTATAAAGCATCAAGAA+GGG | + | chr2_1:15528226-15528245 | None:intergenic | 30.0% |
| ! | AATCGTATAAAGCATCAAGA+AGG | + | chr2_1:15528227-15528246 | None:intergenic | 30.0% |
| ! | TGTATATTGACTATCCCATT+AGG | + | chr2_1:15528274-15528293 | None:intergenic | 30.0% |
| ATATAAACTTCTCTCTCTAC+TGG | + | chr2_1:15528303-15528322 | None:intergenic | 30.0% | |
| ATTCTATTAAACTGCCAAGT+TGG | - | chr2_1:15528551-15528570 | Msa0197520:intron | 30.0% | |
| TAACAAGTGGGTAAAACATA+AGG | + | chr2_1:15528609-15528628 | None:intergenic | 30.0% | |
| TTAGCCACAAACTTTCAATT+TGG | - | chr2_1:15528647-15528666 | Msa0197520:intron | 30.0% | |
| ! | CATTTTTCACCTGATTCAAA+CGG | - | chr2_1:15528899-15528918 | Msa0197520:intron | 30.0% |
| ! | TATTTTGTGCAGTTCACTTT+TGG | - | chr2_1:15529012-15529031 | Msa0197520:intron | 30.0% |
| !! | ATTTTGTGCAGTTCACTTTT+GGG | - | chr2_1:15529013-15529032 | Msa0197520:intron | 30.0% |
| ! | TTTTGCAAAATCAGCAACAT+TGG | + | chr2_1:15529069-15529088 | None:intergenic | 30.0% |
| CATTCCATAATTCATTCACT+TGG | + | chr2_1:15529224-15529243 | None:intergenic | 30.0% | |
| ACCTTAAAAACCTTATGCTA+TGG | - | chr2_1:15529857-15529876 | Msa0197520:intron | 30.0% | |
| ! | ACCATAGCATAAGGTTTTTA+AGG | + | chr2_1:15529861-15529880 | None:intergenic | 30.0% |
| TTAAAAACCTTATGCTATGG+TGG | - | chr2_1:15529860-15529879 | Msa0197520:intron | 30.0% | |
| AAATGTTGCTGTGTTAATTG+AGG | + | chr2_1:15529915-15529934 | None:intergenic | 30.0% | |
| ! | CTTTGGTTCACTTATCATAA+TGG | - | chr2_1:15529972-15529991 | Msa0197520:intron | 30.0% |
| !!! | TTTCCTACTCTTATTTTCTC+CGG | + | chr2_1:15529998-15530017 | None:intergenic | 30.0% |
| GAAAATTGAGAACTACTACA+TGG | - | chr2_1:15530014-15530033 | Msa0197520:intron | 30.0% | |
| AACTAACATGTCAAGGATTA+TGG | + | chr2_1:15530103-15530122 | None:intergenic | 30.0% | |
| ACATTATGATTCAATGTGCA+TGG | - | chr2_1:15530273-15530292 | Msa0197520:intron | 30.0% | |
| ! | ATCATCAACAACGTACTTTT+GGG | + | chr2_1:15530299-15530318 | None:intergenic | 30.0% |
| ! | TATCATCAACAACGTACTTT+TGG | + | chr2_1:15530300-15530319 | None:intergenic | 30.0% |
| !! | GTGTTTGAGTTTCCAATTTT+TGG | + | chr2_1:15530346-15530365 | None:intergenic | 30.0% |
| ! | GTGATAGCCATGATATATTT+TGG | - | chr2_1:15530519-15530538 | Msa0197520:intron | 30.0% |
| !! | ATAGCCATGATATATTTTGG+TGG | - | chr2_1:15530522-15530541 | Msa0197520:intron | 30.0% |
| AACACCACCAAAATATATCA+TGG | + | chr2_1:15530529-15530548 | None:intergenic | 30.0% | |
| GAAAATTCGAAGTAACTCAC+TGG | + | chr2_1:15527585-15527604 | None:intergenic | 35.0% | |
| CAGTTATTGGATTTGGATGT+CGG | - | chr2_1:15527678-15527697 | Msa0197520:CDS | 35.0% | |
| !! | CCTAGTTTGTTTGTCTTTCA+TGG | + | chr2_1:15528186-15528205 | None:intergenic | 35.0% |
| CCATGAAAGACAAACAAACT+AGG | - | chr2_1:15528183-15528202 | Msa0197520:intron | 35.0% | |
| AAAGACAAACAAACTAGGGT+TGG | - | chr2_1:15528188-15528207 | Msa0197520:intron | 35.0% | |
| AAGACAAACAAACTAGGGTT+GGG | - | chr2_1:15528189-15528208 | Msa0197520:intron | 35.0% | |
| AAGTGTGTATGAGTGTATTC+TGG | - | chr2_1:15528248-15528267 | Msa0197520:intron | 35.0% | |
| TGAGTGTATTCTGACCTAAT+TGG | + | chr2_1:15528337-15528356 | None:intergenic | 35.0% | |
| TCTGATAGATGGATCATTCA+GGG | + | chr2_1:15528445-15528464 | None:intergenic | 35.0% | |
| AATGATCCATCTATCAGACA+AGG | - | chr2_1:15528447-15528466 | Msa0197520:intron | 35.0% | |
| GTTAAATATAGGGACCAACT+TGG | + | chr2_1:15528568-15528587 | None:intergenic | 35.0% | |
| ! | TTACCCACTTGTTAGCAATT+TGG | - | chr2_1:15528615-15528634 | Msa0197520:intron | 35.0% |
| AGACCAAATTGCTAACAAGT+GGG | + | chr2_1:15528621-15528640 | None:intergenic | 35.0% | |
| GGAACCAAATTGAAAGTTTG+TGG | + | chr2_1:15528654-15528673 | None:intergenic | 35.0% | |
| TAATCTCGAGAACCTATTTG+AGG | - | chr2_1:15528760-15528779 | Msa0197520:intron | 35.0% | |
| TCAACACTTGACAACAACAT+TGG | + | chr2_1:15528949-15528968 | None:intergenic | 35.0% | |
| AGTGAACTGCACAAAATAAG+TGG | + | chr2_1:15529010-15529029 | None:intergenic | 35.0% | |
| CTTTCCTATCCTCAACAAAT+AGG | - | chr2_1:15529101-15529120 | Msa0197520:intron | 35.0% | |
| ! | CATACCTATTTGTTGAGGAT+AGG | + | chr2_1:15529108-15529127 | None:intergenic | 35.0% |
| ATGCCCAAGTGAATGAATTA+TGG | - | chr2_1:15529217-15529236 | Msa0197520:CDS | 35.0% | |
| ACAGCTGTGTCAAAAAGAAA+AGG | + | chr2_1:15529325-15529344 | None:intergenic | 35.0% | |
| CACATCACATATAGTGATGA+AGG | + | chr2_1:15529565-15529584 | None:intergenic | 35.0% | |
| ATGTGATGTGTGCATAATTC+AGG | - | chr2_1:15529575-15529594 | Msa0197520:intron | 35.0% | |
| TATATACTGAGAGAGCTGAT+TGG | + | chr2_1:15529814-15529833 | None:intergenic | 35.0% | |
| TTTAACACCACCATAGCATA+AGG | + | chr2_1:15529870-15529889 | None:intergenic | 35.0% | |
| TAGTTGCAACTAACATGTCA+AGG | + | chr2_1:15530110-15530129 | None:intergenic | 35.0% | |
| TATATCATGGCTATCACACA+AGG | + | chr2_1:15530516-15530535 | None:intergenic | 35.0% | |
| CAACATGAAAATTGCAATCC+AGG | + | chr2_1:15530716-15530735 | None:intergenic | 35.0% | |
| CTTCAAAGCTTCAAGCATTC+TGG | - | chr2_1:15527537-15527556 | Msa0197520:three_prime_UTR | 40.0% | |
| !!! | CGAAGTAACTCACTGGTTTT+GGG | + | chr2_1:15527578-15527597 | None:intergenic | 40.0% |
| !!! | TCGAAGTAACTCACTGGTTT+TGG | + | chr2_1:15527579-15527598 | None:intergenic | 40.0% |
| GTGTGAAGTAGCATAATGTG+AGG | - | chr2_1:15527942-15527961 | Msa0197520:intron | 40.0% | |
| AAACATGTACCTTGTATGCG+AGG | - | chr2_1:15528137-15528156 | Msa0197520:CDS | 40.0% | |
| ATGAGTGTATTCTGGCCTAA+TGG | - | chr2_1:15528256-15528275 | Msa0197520:intron | 40.0% | |
| TGAGTGTATTCTGGCCTAAT+GGG | - | chr2_1:15528257-15528276 | Msa0197520:intron | 40.0% | |
| AAGCCATGAGAGACAAACTA+GGG | + | chr2_1:15528402-15528421 | None:intergenic | 40.0% | |
| GTCTGATAGATGGATCATTC+AGG | + | chr2_1:15528446-15528465 | None:intergenic | 40.0% | |
| TGTGTACCTTGTCTGATAGA+TGG | + | chr2_1:15528456-15528475 | None:intergenic | 40.0% | |
| GAGACCAAATTGCTAACAAG+TGG | + | chr2_1:15528622-15528641 | None:intergenic | 40.0% | |
| GAATTTGGATCCTGACTCTA+AGG | - | chr2_1:15528687-15528706 | Msa0197520:intron | 40.0% | |
| TCATACTAGTCCTTAGAGTC+AGG | + | chr2_1:15528700-15528719 | None:intergenic | 40.0% | |
| GAGTCAAATTTGACAGAGAC+TGG | - | chr2_1:15528718-15528737 | Msa0197520:intron | 40.0% | |
| AAATTCATCCCTAACTCTGC+AGG | + | chr2_1:15528790-15528809 | None:intergenic | 40.0% | |
| TGCAGAGTTAGGGATGAATT+TGG | - | chr2_1:15528789-15528808 | Msa0197520:intron | 40.0% | |
| AGAGTTAGGGATGAATTTGG+TGG | - | chr2_1:15528792-15528811 | Msa0197520:intron | 40.0% | |
| AAGAGACAACCGTTTGAATC+AGG | + | chr2_1:15528911-15528930 | None:intergenic | 40.0% | |
| ! | TTGACAACAACATTGGTGAC+TGG | + | chr2_1:15528942-15528961 | None:intergenic | 40.0% |
| TTTGGGCACCTACATTTAAG+TGG | - | chr2_1:15529030-15529049 | Msa0197520:intron | 40.0% | |
| TTGGGCACCTACATTTAAGT+GGG | - | chr2_1:15529031-15529050 | Msa0197520:intron | 40.0% | |
| CTGATACCCCACTTAAATGT+AGG | + | chr2_1:15529041-15529060 | None:intergenic | 40.0% | |
| ! | ATGCGCATACCTATTTGTTG+AGG | + | chr2_1:15529113-15529132 | None:intergenic | 40.0% |
| ! | CTGAATTCTTTGAAAGGAGC+AGG | - | chr2_1:15529193-15529212 | Msa0197520:intron | 40.0% |
| TTACAGCTACTGGACTTATC+TGG | - | chr2_1:15529344-15529363 | Msa0197520:intron | 40.0% | |
| AGTGGTCTGAAGATCATTTG+TGG | - | chr2_1:15529458-15529477 | Msa0197520:intron | 40.0% | |
| TATTACGCTTTGCTAGCACA+AGG | + | chr2_1:15529526-15529545 | None:intergenic | 40.0% | |
| AGATCACGCAAACAACAGTA+GGG | + | chr2_1:15529775-15529794 | None:intergenic | 40.0% | |
| GGTTCACTTATCATAATGGC+CGG | - | chr2_1:15529976-15529995 | Msa0197520:intron | 40.0% | |
| TTGCAACGTTCACAGCAAAA+AGG | + | chr2_1:15530159-15530178 | None:intergenic | 40.0% | |
| !! | TTTTGCTGTGAACGTTGCAA+TGG | - | chr2_1:15530159-15530178 | Msa0197520:intron | 40.0% |
| ! | ATTTGCGTGACAGTTGGTAT+AGG | + | chr2_1:15530195-15530214 | None:intergenic | 40.0% |
| !! | TGAGTTTCCAATTTTTGGGC+CGG | + | chr2_1:15530341-15530360 | None:intergenic | 40.0% |
| !! | ATCCTGAAGAGCATTGTAGA+AGG | - | chr2_1:15530443-15530462 | Msa0197520:intron | 40.0% |
| TAACTCGTTATCTACTTCCC+AGG | - | chr2_1:15530601-15530620 | Msa0197520:intron | 40.0% | |
| TCTGACGAATAATCTTGCCT+GGG | + | chr2_1:15530621-15530640 | None:intergenic | 40.0% | |
| GCAAGATTATTCGTCAGAGA+AGG | - | chr2_1:15530623-15530642 | Msa0197520:intron | 40.0% | |
| GCAAAGAAGACTTGCAACAA+GGG | + | chr2_1:15530848-15530867 | None:intergenic | 40.0% | |
| TGCAAAGAAGACTTGCAACA+AGG | + | chr2_1:15530849-15530868 | None:intergenic | 40.0% | |
| ! | CAAAAGCACAGGTCTTAACT+TGG | + | chr2_1:15530879-15530898 | None:intergenic | 40.0% |
| ! | GTTAAGACCTGTGCTTTTGA+AGG | - | chr2_1:15530880-15530899 | Msa0197520:five_prime_UTR | 40.0% |
| GAATTCGCTTTCAATCGGAG+AGG | - | chr2_1:15527478-15527497 | Msa0197520:three_prime_UTR | 45.0% | |
| !! | GAGAGTGTCCTACAAAGTAG+AGG | + | chr2_1:15528013-15528032 | None:intergenic | 45.0% |
| CGATTGAGCTATCATGAGAG+AGG | - | chr2_1:15528160-15528179 | Msa0197520:CDS | 45.0% | |
| CACACACTTTGATCGTACAG+AGG | - | chr2_1:15528355-15528374 | Msa0197520:intron | 45.0% | |
| ! | CAACCCTAGTTTGTCTCTCA+TGG | - | chr2_1:15528396-15528415 | Msa0197520:intron | 45.0% |
| GAAGCCATGAGAGACAAACT+AGG | + | chr2_1:15528403-15528422 | None:intergenic | 45.0% | |
| TCTGCAGGACATCCTCAAAT+AGG | + | chr2_1:15528775-15528794 | None:intergenic | 45.0% | |
| TGGGCACCTACATTTAAGTG+GGG | - | chr2_1:15529032-15529051 | Msa0197520:intron | 45.0% | |
| TGAGGATAGGAAAGCTTCTC+TGG | + | chr2_1:15529095-15529114 | None:intergenic | 45.0% | |
| TTACGCTTTGCTTGCACTGA+AGG | + | chr2_1:15529485-15529504 | None:intergenic | 45.0% | |
| CAGATCACGCAAACAACAGT+AGG | + | chr2_1:15529776-15529795 | None:intergenic | 45.0% | |
| TGGCCGGAGAAAATAAGAGT+AGG | - | chr2_1:15529992-15530011 | Msa0197520:intron | 45.0% | |
| ACCAACTGTCACGCAAATTG+CGG | - | chr2_1:15530197-15530216 | Msa0197520:intron | 45.0% | |
| !! | AGTTTCCAATTTTTGGGCCG+GGG | + | chr2_1:15530339-15530358 | None:intergenic | 45.0% |
| !! | GAGTTTCCAATTTTTGGGCC+GGG | + | chr2_1:15530340-15530359 | None:intergenic | 45.0% |
| GTCCTTCTACAATGCTCTTC+AGG | + | chr2_1:15530448-15530467 | None:intergenic | 45.0% | |
| CTCTGACGAATAATCTTGCC+TGG | + | chr2_1:15530622-15530641 | None:intergenic | 45.0% | |
| !! | TTAAATAAATAAATAAAAAG+GGG | + | chr2_1:15530811-15530830 | None:intergenic | 5.0% |
| !! | GTTAAATAAATAAATAAAAA+GGG | + | chr2_1:15530812-15530831 | None:intergenic | 5.0% |
| !! | TGTTAAATAAATAAATAAAA+AGG | + | chr2_1:15530813-15530832 | None:intergenic | 5.0% |
| !! | GCATTCTGGAATCATCCAGC+TGG | - | chr2_1:15527551-15527570 | Msa0197520:three_prime_UTR | 50.0% |
| TGAGGATGTCCTGCAGAGTT+AGG | - | chr2_1:15528778-15528797 | Msa0197520:intron | 50.0% | |
| GAGGATGTCCTGCAGAGTTA+GGG | - | chr2_1:15528779-15528798 | Msa0197520:intron | 50.0% | |
| GGATAGGAAAGCTTCTCTGG+TGG | + | chr2_1:15529092-15529111 | None:intergenic | 50.0% | |
| GACACAGCTGTTACAGCTAC+TGG | - | chr2_1:15529334-15529353 | Msa0197520:intron | 50.0% | |
| AACGTTGCAATGGCAGGAAC+TGG | - | chr2_1:15530169-15530188 | Msa0197520:intron | 50.0% | |
| ACCGCAATTTGCGTGACAGT+TGG | + | chr2_1:15530201-15530220 | None:intergenic | 50.0% | |
| CTGTCACGCAAATTGCGGTA+AGG | - | chr2_1:15530202-15530221 | Msa0197520:intron | 50.0% | |
| ! | ATGTTAGTTTGGCCCTTCCC+CGG | - | chr2_1:15530319-15530338 | Msa0197520:intron | 50.0% |
| TGTACTTGGAGCTCGATACC+TGG | - | chr2_1:15530695-15530714 | Msa0197520:intron | 50.0% | |
| GGATGAATTACGGCAGATGG+AGG | + | chr2_1:15530790-15530809 | None:intergenic | 50.0% | |
| AGGGGATGAATTACGGCAGA+TGG | + | chr2_1:15530793-15530812 | None:intergenic | 50.0% | |
| !!! | TCACTGGTTTTGGGACCAGC+TGG | + | chr2_1:15527569-15527588 | None:intergenic | 55.0% |
| GCTCAATCGCCTCGCATACA+AGG | + | chr2_1:15528149-15528168 | None:intergenic | 55.0% | |
| GCTGTGAACGTTGCAATGGC+AGG | - | chr2_1:15530163-15530182 | Msa0197520:intron | 55.0% | |
| !! | CCAATTTTTGGGCCGGGGAA+GGG | + | chr2_1:15530334-15530353 | None:intergenic | 55.0% |
| !! | TCCAATTTTTGGGCCGGGGA+AGG | + | chr2_1:15530335-15530354 | None:intergenic | 55.0% |
| CCCTTCCCCGGCCCAAAAAT+TGG | - | chr2_1:15530331-15530350 | Msa0197520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 15527416 | 15530908 | 15527416 | ID=Msa0197520;Name=Msa0197520 |
| chr2_1 | mRNA | 15527416 | 15530908 | 15527416 | ID=Msa0197520-mRNA-1;Parent=Msa0197520;Name=Msa0197520-mRNA-1;_AED=0.27;_eAED=0.27;_QI=114|1|1|1|1|1|5|246|106 |
| chr2_1 | exon | 15527416 | 15527701 | 15527416 | ID=Msa0197520-mRNA-1:exon:6574;Parent=Msa0197520-mRNA-1 |
| chr2_1 | exon | 15528106 | 15528179 | 15528106 | ID=Msa0197520-mRNA-1:exon:6573;Parent=Msa0197520-mRNA-1 |
| chr2_1 | exon | 15528931 | 15528983 | 15528931 | ID=Msa0197520-mRNA-1:exon:6572;Parent=Msa0197520-mRNA-1 |
| chr2_1 | exon | 15529202 | 15529300 | 15529202 | ID=Msa0197520-mRNA-1:exon:6571;Parent=Msa0197520-mRNA-1 |
| chr2_1 | exon | 15530740 | 15530908 | 15530740 | ID=Msa0197520-mRNA-1:exon:6570;Parent=Msa0197520-mRNA-1 |
| chr2_1 | five_prime_UTR | 15530795 | 15530908 | 15530795 | ID=Msa0197520-mRNA-1:five_prime_utr;Parent=Msa0197520-mRNA-1 |
| chr2_1 | CDS | 15530740 | 15530794 | 15530740 | ID=Msa0197520-mRNA-1:cds;Parent=Msa0197520-mRNA-1 |
| chr2_1 | CDS | 15529202 | 15529300 | 15529202 | ID=Msa0197520-mRNA-1:cds;Parent=Msa0197520-mRNA-1 |
| chr2_1 | CDS | 15528931 | 15528983 | 15528931 | ID=Msa0197520-mRNA-1:cds;Parent=Msa0197520-mRNA-1 |
| chr2_1 | CDS | 15528106 | 15528179 | 15528106 | ID=Msa0197520-mRNA-1:cds;Parent=Msa0197520-mRNA-1 |
| chr2_1 | CDS | 15527662 | 15527701 | 15527662 | ID=Msa0197520-mRNA-1:cds;Parent=Msa0197520-mRNA-1 |
| chr2_1 | three_prime_UTR | 15527416 | 15527661 | 15527416 | ID=Msa0197520-mRNA-1:three_prime_utr;Parent=Msa0197520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
