Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077880 | XP_003591816.1 | 97.753 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 3.08e-124 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077880 | sp|P32294|AX22B_VIGRR | 70.833 | 192 | 42 | 3 | 1 | 178 | 1 | 192 | 5.98e-95 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077880 | G7I486 | 97.753 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 1.47e-124 | 357 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0077880 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0077880 | 0.802837 | 4.640499e-49 | -8.615850e-47 |
| Msa0011930 | Msa0077880 | 0.800183 | 1.624085e-48 | -8.615850e-47 |
| Msa0014570 | Msa0077880 | 0.812807 | 3.520644e-51 | -8.615850e-47 |
| Msa0019120 | Msa0077880 | 0.800402 | 1.465476e-48 | -8.615850e-47 |
| Msa0030280 | Msa0077880 | 0.956078 | 6.872313e-114 | -8.615850e-47 |
| Msa0031820 | Msa0077880 | 0.807161 | 5.786866e-50 | -8.615850e-47 |
| Msa0032320 | Msa0077880 | 0.809063 | 2.277461e-50 | -8.615850e-47 |
| Msa0039250 | Msa0077880 | 0.825150 | 5.484354e-54 | -8.615850e-47 |
| Msa0052610 | Msa0077880 | 0.825585 | 4.325457e-54 | -8.615850e-47 |
| Msa0057590 | Msa0077880 | 0.811579 | 6.524836e-51 | -8.615850e-47 |
| Msa0057610 | Msa0077880 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0067870 | Msa0077880 | 0.808181 | 3.513564e-50 | -8.615850e-47 |
| Msa0077880 | Msa0079110 | 0.814113 | 1.817612e-51 | -8.615850e-47 |
| Msa0077880 | Msa0094010 | 0.803983 | 2.686388e-49 | -8.615850e-47 |
| Msa0077880 | Msa0097850 | 0.840150 | 1.033707e-57 | -8.615850e-47 |
| Msa0077880 | Msa0098470 | 0.804277 | 2.334036e-49 | -8.615850e-47 |
| Msa0077880 | Msa0100800 | 0.807418 | 5.104852e-50 | -8.615850e-47 |
| Msa0077880 | Msa0101880 | 0.815951 | 7.106914e-52 | -8.615850e-47 |
| Msa0077880 | Msa0108870 | 0.803924 | 2.763584e-49 | -8.615850e-47 |
| Msa0077880 | Msa0115090 | 0.805475 | 1.311012e-49 | -8.615850e-47 |
| Msa0077880 | Msa0125770 | 0.903052 | 5.163903e-79 | -8.615850e-47 |
| Msa0077880 | Msa0126770 | 0.819915 | 9.036351e-53 | -8.615850e-47 |
| Msa0077880 | Msa0130240 | 0.811244 | 7.713987e-51 | -8.615850e-47 |
| Msa0077880 | Msa0133720 | 0.825009 | 5.921719e-54 | -8.615850e-47 |
| Msa0077880 | Msa0133820 | 0.817783 | 2.757437e-52 | -8.615850e-47 |
| Msa0077880 | Msa0134000 | 0.816036 | 6.800838e-52 | -8.615850e-47 |
| Msa0077880 | Msa0145070 | 0.809675 | 1.683193e-50 | -8.615850e-47 |
| Msa0077880 | Msa0145150 | 0.808115 | 3.628344e-50 | -8.615850e-47 |
| Msa0077880 | Msa0147980 | 0.809586 | 1.758236e-50 | -8.615850e-47 |
| Msa0077880 | Msa0154440 | 0.807656 | 4.544365e-50 | -8.615850e-47 |
| Msa0077880 | Msa0165270 | 0.801149 | 1.031610e-48 | -8.615850e-47 |
| Msa0077880 | Msa0165440 | 0.815874 | 7.393041e-52 | -8.615850e-47 |
| Msa0077880 | Msa0170410 | 0.888489 | 5.640323e-73 | -8.615850e-47 |
| Msa0077880 | Msa0171850 | 0.820393 | 7.025415e-53 | -8.615850e-47 |
| Msa0077880 | Msa0181000 | 0.817831 | 2.689085e-52 | -8.615850e-47 |
| Msa0077880 | Msa0181230 | 0.840853 | 6.771148e-58 | -8.615850e-47 |
| Msa0077880 | Msa0187030 | 0.810712 | 1.005539e-50 | -8.615850e-47 |
| Msa0077880 | Msa0197520 | 0.816788 | 4.617068e-52 | -8.615850e-47 |
| Msa0077880 | Msa0198520 | 0.801459 | 8.916641e-49 | -8.615850e-47 |
| Msa0077880 | Msa0207350 | 0.843173 | 1.648805e-58 | -8.615850e-47 |
| Msa0077880 | Msa0230150 | 0.838038 | 3.645443e-57 | -8.615850e-47 |
| Msa0077880 | Msa0238230 | 0.811771 | 5.924559e-51 | -8.615850e-47 |
| Msa0077880 | Msa0298950 | 0.803124 | 4.048519e-49 | -8.615850e-47 |
| Msa0077880 | Msa0322900 | 0.804042 | 2.611323e-49 | -8.615850e-47 |
| Msa0077880 | Msa0358670 | 0.802878 | 4.551076e-49 | -8.615850e-47 |
| Msa0077880 | Msa0367470 | 0.810587 | 1.070196e-50 | -8.615850e-47 |
| Msa0077880 | Msa0386920 | 0.804957 | 1.683459e-49 | -8.615850e-47 |
| Msa0077880 | Msa0431770 | 0.813663 | 2.284411e-51 | -8.615850e-47 |
| Msa0077880 | Msa0437510 | 0.837559 | 4.839674e-57 | -8.615850e-47 |
| Msa0077880 | Msa0467100 | 0.820591 | 6.327500e-53 | -8.615850e-47 |
| Msa0077880 | Msa0479200 | 0.802617 | 5.153951e-49 | -8.615850e-47 |
| Msa0077880 | Msa0498450 | 0.802314 | 5.949765e-49 | -8.615850e-47 |
| Msa0077880 | Msa0518030 | 0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0077880 | Msa0527910 | 0.800801 | 1.215632e-48 | -8.615850e-47 |
| Msa0077880 | Msa0542160 | 0.806367 | 8.512848e-50 | -8.615850e-47 |
| Msa0077880 | Msa0545060 | 0.800962 | 1.126665e-48 | -8.615850e-47 |
| Msa0077880 | Msa0548150 | 0.811541 | 6.650319e-51 | -8.615850e-47 |
| Msa0077880 | Msa0556010 | 0.824070 | 9.848683e-54 | -8.615850e-47 |
| Msa0077880 | Msa0578090 | 0.823168 | 1.601873e-53 | -8.615850e-47 |
| Msa0077880 | Msa0581690 | 0.847759 | 9.434589e-60 | -8.615850e-47 |
| Msa0077880 | Msa0583500 | 0.801322 | 9.510558e-49 | -8.615850e-47 |
| Msa0077880 | Msa0584550 | 0.833783 | 4.374211e-56 | -8.615850e-47 |
| Msa0077880 | Msa0586850 | 0.813114 | 3.014876e-51 | -8.615850e-47 |
| Msa0077880 | Msa0619470 | 0.813696 | 2.245912e-51 | -8.615850e-47 |
| Msa0077880 | Msa0619510 | 0.822639 | 2.126741e-53 | -8.615850e-47 |
| Msa0077880 | Msa0633760 | 0.822626 | 2.142489e-53 | -8.615850e-47 |
| Msa0077880 | Msa0640500 | 0.833584 | 4.903330e-56 | -8.615850e-47 |
| Msa0077880 | Msa0648520 | 0.800510 | 1.393613e-48 | -8.615850e-47 |
| Msa0077880 | Msa0659600 | 0.824890 | 6.317074e-54 | -8.615850e-47 |
| Msa0077880 | Msa0664760 | 0.827961 | 1.171181e-54 | -8.615850e-47 |
| Msa0077880 | Msa0679100 | 0.819527 | 1.108653e-52 | -8.615850e-47 |
| Msa0077880 | Msa0691050 | 0.810415 | 1.165787e-50 | -8.615850e-47 |
| Msa0077880 | Msa0742510 | 0.805992 | 1.021022e-49 | -8.615850e-47 |
| Msa0077880 | Msa0744100 | 0.800759 | 1.239611e-48 | -8.615850e-47 |
| Msa0077880 | Msa0748920 | 0.801860 | 7.377440e-49 | -8.615850e-47 |
| Msa0077880 | Msa0779550 | 0.803036 | 4.222345e-49 | -8.615850e-47 |
| Msa0077880 | Msa0780930 | 0.803542 | 3.316601e-49 | -8.615850e-47 |
| Msa0077880 | Msa0788110 | 0.802943 | 4.413613e-49 | -8.615850e-47 |
| Msa0077880 | Msa0800270 | 0.830958 | 2.189962e-55 | -8.615850e-47 |
| Msa0077880 | Msa0818770 | 0.802884 | 4.539674e-49 | -8.615850e-47 |
| Msa0077880 | Msa0819540 | 0.813233 | 2.839786e-51 | -8.615850e-47 |
| Msa0077880 | Msa0825270 | 0.802938 | 4.424205e-49 | -8.615850e-47 |
| Msa0077880 | Msa0825280 | 0.802803 | 4.717069e-49 | -8.615850e-47 |
| Msa0077880 | Msa0838260 | 0.833269 | 5.874670e-56 | -8.615850e-47 |
| Msa0077880 | Msa0901110 | 0.800929 | 1.144369e-48 | -8.615850e-47 |
| Msa0077880 | Msa0937020 | 0.805208 | 1.491849e-49 | -8.615850e-47 |
| Msa0077880 | Msa0947530 | -0.820753 | 5.807125e-53 | -8.615850e-47 |
| Msa0077880 | Msa0955190 | 0.800468 | 1.421142e-48 | -8.615850e-47 |
| Msa0077880 | Msa1033660 | 0.833671 | 4.665116e-56 | -8.615850e-47 |
| Msa0077880 | Msa1040840 | 0.812740 | 3.641129e-51 | -8.615850e-47 |
| Msa0077880 | Msa1050700 | 0.803787 | 2.950346e-49 | -8.615850e-47 |
| Msa0077880 | Msa1051330 | 0.802776 | 4.777901e-49 | -8.615850e-47 |
| Msa0077880 | Msa1073490 | 0.839546 | 1.485666e-57 | -8.615850e-47 |
| Msa0077880 | Msa1079230 | 0.812175 | 4.837717e-51 | -8.615850e-47 |
| Msa0077880 | Msa1131560 | 0.805618 | 1.223768e-49 | -8.615850e-47 |
| Msa0077880 | Msa1145240 | 0.819962 | 8.817285e-53 | -8.615850e-47 |
| Msa0077880 | Msa1152510 | 0.817221 | 3.689908e-52 | -8.615850e-47 |
| Msa0077880 | Msa1160310 | 0.835114 | 2.025530e-56 | -8.615850e-47 |
| Msa0077880 | Msa1188560 | 0.808657 | 2.780955e-50 | -8.615850e-47 |
| Msa0077880 | Msa1198530 | 0.811735 | 6.033037e-51 | -8.615850e-47 |
| Msa0077880 | Msa1198880 | 0.826482 | 2.648452e-54 | -8.615850e-47 |
| Msa0077880 | Msa1205850 | 0.802289 | 6.020321e-49 | -8.615850e-47 |
| Msa0077880 | Msa1208160 | 0.804620 | 1.979715e-49 | -8.615850e-47 |
| Msa0077880 | Msa1223330 | 0.820210 | 7.736330e-53 | -8.615850e-47 |
| Msa0077880 | Msa1252850 | -0.817313 | 3.517879e-52 | -8.615850e-47 |
| Msa0077880 | Msa1253810 | 0.808434 | 3.103619e-50 | -8.615850e-47 |
| Msa0077880 | Msa1262960 | 0.813016 | 3.168066e-51 | -8.615850e-47 |
| Msa0077880 | Msa1279140 | -0.817362 | 3.429456e-52 | -8.615850e-47 |
| Msa0077880 | Msa1299330 | 0.805492 | 1.300534e-49 | -8.615850e-47 |
| Msa0077880 | Msa1302060 | 0.819242 | 1.287502e-52 | -8.615850e-47 |
| Msa0077880 | Msa1311960 | 0.833096 | 6.488974e-56 | -8.615850e-47 |
| Msa0077880 | Msa1318620 | 0.801078 | 1.067078e-48 | -8.615850e-47 |
| Msa0077880 | Msa1320820 | 0.808518 | 2.977003e-50 | -8.615850e-47 |
| Msa0077880 | Msa1323050 | 0.808692 | 2.733140e-50 | -8.615850e-47 |
| Msa0077880 | Msa1333890 | 0.820486 | 6.688688e-53 | -8.615850e-47 |
| Msa0077880 | Msa1373820 | 0.813178 | 2.918590e-51 | -8.615850e-47 |
| Msa0077880 | Msa1380970 | 0.809210 | 2.117720e-50 | -8.615850e-47 |
| Msa0077880 | Msa1390230 | 0.806310 | 8.752505e-50 | -8.615850e-47 |
| Msa0077880 | Msa1422910 | 0.823958 | 1.046355e-53 | -8.615850e-47 |
| Msa0077880 | Msa1424780 | 0.805595 | 1.237472e-49 | -8.615850e-47 |
| Msa0077880 | Msa1433600 | 0.800518 | 1.387860e-48 | -8.615850e-47 |
| Msa0077880 | Msa1449910 | 0.838289 | 3.141551e-57 | -8.615850e-47 |
| Msa0077880 | Msa1465680 | 0.816663 | 4.923516e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077880 | MtrunA17_Chr1g0187961 | 97.753 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 2.83e-128 | 357 |
| Msa0077880 | MtrunA17_Chr1g0166011 | 74.176 | 182 | 33 | 3 | 11 | 178 | 1 | 182 | 6.08e-93 | 268 |
| Msa0077880 | MtrunA17_Chr1g0184801 | 59.701 | 201 | 58 | 5 | 1 | 178 | 1 | 201 | 3.78e-80 | 236 |
| Msa0077880 | MtrunA17_Chr7g0260621 | 56.477 | 193 | 57 | 5 | 11 | 178 | 11 | 201 | 1.16e-72 | 217 |
| Msa0077880 | MtrunA17_Chr6g0486121 | 42.174 | 230 | 73 | 5 | 9 | 178 | 13 | 242 | 5.98e-53 | 169 |
| Msa0077880 | MtrunA17_Chr1g0187921 | 45.622 | 217 | 69 | 6 | 11 | 178 | 8 | 224 | 7.69e-52 | 166 |
| Msa0077880 | MtrunA17_Chr1g0190711 | 42.291 | 227 | 72 | 6 | 11 | 178 | 15 | 241 | 1.65e-49 | 160 |
| Msa0077880 | MtrunA17_Chr7g0260641 | 49.153 | 177 | 63 | 5 | 28 | 178 | 63 | 238 | 2.76e-48 | 157 |
| Msa0077880 | MtrunA17_Chr5g0411501 | 45.304 | 181 | 68 | 4 | 29 | 178 | 143 | 323 | 1.07e-47 | 158 |
| Msa0077880 | MtrunA17_Chr1g0184791 | 41.892 | 222 | 64 | 6 | 16 | 178 | 18 | 233 | 1.57e-47 | 155 |
| Msa0077880 | MtrunA17_Chr8g0366881 | 47.159 | 176 | 64 | 5 | 29 | 178 | 164 | 336 | 1.16e-45 | 153 |
| Msa0077880 | MtrunA17_Chr5g0428141 | 47.126 | 174 | 62 | 5 | 30 | 178 | 167 | 335 | 1.24e-45 | 153 |
| Msa0077880 | MtrunA17_Chr2g0331411 | 53.020 | 149 | 43 | 4 | 57 | 178 | 166 | 314 | 1.85e-45 | 152 |
| Msa0077880 | MtrunA17_Chr8g0390281 | 47.802 | 182 | 66 | 6 | 26 | 178 | 100 | 281 | 3.01e-44 | 148 |
| Msa0077880 | MtrunA17_Chr4g0004181 | 46.746 | 169 | 81 | 4 | 11 | 178 | 6 | 166 | 2.77e-41 | 137 |
| Msa0077880 | MtrunA17_Chr2g0332141 | 58.065 | 93 | 30 | 3 | 87 | 170 | 8 | 100 | 4.63e-30 | 106 |
| Msa0077880 | MtrunA17_Chr1g0183251 | 33.333 | 177 | 57 | 4 | 62 | 178 | 81 | 256 | 2.61e-26 | 100 |
| Msa0077880 | MtrunA17_Chr8g0340731 | 36.420 | 162 | 57 | 5 | 55 | 174 | 103 | 260 | 3.68e-25 | 98.2 |
| Msa0077880 | MtrunA17_Chr4g0069561 | 37.984 | 129 | 77 | 2 | 48 | 175 | 58 | 184 | 3.90e-25 | 95.9 |
| Msa0077880 | MtrunA17_Chr2g0330951 | 33.721 | 172 | 65 | 4 | 50 | 174 | 85 | 254 | 1.28e-24 | 96.7 |
| Msa0077880 | MtrunA17_Chr1g0193861 | 43.820 | 89 | 49 | 1 | 84 | 171 | 82 | 170 | 1.49e-19 | 81.3 |
| Msa0077880 | MtrunA17_Chr7g0270851 | 40.426 | 94 | 55 | 1 | 79 | 171 | 62 | 155 | 9.76e-19 | 78.6 |
| Msa0077880 | MtrunA17_Chr3g0137601 | 31.538 | 130 | 69 | 3 | 64 | 178 | 89 | 213 | 1.34e-18 | 79.3 |
| Msa0077880 | MtrunA17_Chr4g0064131 | 30.579 | 121 | 63 | 3 | 64 | 171 | 93 | 205 | 2.21e-16 | 73.6 |
| Msa0077880 | MtrunA17_Chr1g0209181 | 37.607 | 117 | 62 | 4 | 64 | 171 | 54 | 168 | 2.29e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077880 | AT5G43700.1 | 62.295 | 183 | 62 | 3 | 1 | 178 | 1 | 181 | 7.34e-77 | 228 |
| Msa0077880 | AT1G04240.1 | 60.773 | 181 | 58 | 4 | 11 | 178 | 5 | 185 | 1.18e-76 | 227 |
| Msa0077880 | AT1G04240.2 | 60.773 | 181 | 58 | 4 | 11 | 178 | 105 | 285 | 8.45e-76 | 229 |
| Msa0077880 | AT3G23030.1 | 60.112 | 178 | 53 | 4 | 5 | 175 | 1 | 167 | 2.64e-69 | 208 |
| Msa0077880 | AT3G23030.2 | 59.777 | 179 | 54 | 4 | 4 | 175 | 87 | 254 | 8.44e-69 | 210 |
| Msa0077880 | AT4G14560.1 | 60.479 | 167 | 59 | 3 | 9 | 175 | 5 | 164 | 3.87e-65 | 197 |
| Msa0077880 | AT3G04730.1 | 45.089 | 224 | 66 | 6 | 11 | 178 | 2 | 224 | 1.25e-53 | 171 |
| Msa0077880 | AT4G14550.2 | 46.759 | 216 | 67 | 8 | 11 | 178 | 1 | 216 | 9.07e-53 | 168 |
| Msa0077880 | AT4G14550.1 | 46.759 | 216 | 67 | 8 | 11 | 178 | 1 | 216 | 1.34e-52 | 167 |
| Msa0077880 | AT1G04250.1 | 43.721 | 215 | 72 | 5 | 10 | 178 | 6 | 217 | 1.73e-51 | 165 |
| Msa0077880 | AT3G23050.1 | 44.889 | 225 | 67 | 8 | 11 | 178 | 6 | 230 | 1.90e-51 | 165 |
| Msa0077880 | AT4G29080.1 | 42.248 | 258 | 61 | 8 | 9 | 178 | 36 | 293 | 1.44e-50 | 165 |
| Msa0077880 | AT3G15540.1 | 45.989 | 187 | 76 | 5 | 11 | 177 | 6 | 187 | 5.11e-45 | 147 |
| Msa0077880 | AT1G15580.1 | 49.419 | 172 | 70 | 6 | 9 | 177 | 6 | 163 | 3.19e-44 | 144 |
| Msa0077880 | AT1G52830.1 | 45.556 | 180 | 83 | 5 | 11 | 177 | 6 | 183 | 1.34e-42 | 141 |
| Msa0077880 | AT2G22670.5 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.59e-42 | 144 |
| Msa0077880 | AT2G22670.2 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.59e-42 | 144 |
| Msa0077880 | AT2G22670.3 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.80e-42 | 144 |
| Msa0077880 | AT2G22670.1 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.80e-42 | 144 |
| Msa0077880 | AT2G22670.4 | 47.468 | 158 | 56 | 4 | 48 | 178 | 167 | 324 | 3.11e-42 | 144 |
| Msa0077880 | AT5G65670.1 | 50.345 | 145 | 46 | 4 | 60 | 178 | 180 | 324 | 2.63e-41 | 142 |
| Msa0077880 | AT5G65670.2 | 50.345 | 145 | 46 | 4 | 60 | 178 | 180 | 324 | 3.15e-41 | 141 |
| Msa0077880 | AT4G14550.3 | 43.590 | 195 | 62 | 8 | 11 | 157 | 1 | 195 | 4.71e-40 | 134 |
| Msa0077880 | AT3G23050.2 | 41.463 | 205 | 63 | 8 | 11 | 158 | 6 | 210 | 2.39e-38 | 130 |
| Msa0077880 | AT4G28640.1 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 1.95e-30 | 111 |
| Msa0077880 | AT4G28640.3 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 2.37e-30 | 111 |
| Msa0077880 | AT2G33310.3 | 38.587 | 184 | 64 | 6 | 44 | 178 | 47 | 230 | 2.74e-30 | 111 |
| Msa0077880 | AT2G33310.1 | 38.587 | 184 | 64 | 6 | 44 | 178 | 47 | 230 | 2.74e-30 | 111 |
| Msa0077880 | AT4G28640.2 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 1.36e-29 | 110 |
| Msa0077880 | AT2G33310.2 | 38.378 | 185 | 64 | 6 | 44 | 178 | 47 | 231 | 2.04e-29 | 108 |
| Msa0077880 | AT1G04550.2 | 35.754 | 179 | 74 | 4 | 40 | 178 | 46 | 223 | 5.74e-29 | 107 |
| Msa0077880 | AT3G16500.2 | 31.336 | 217 | 93 | 6 | 14 | 174 | 36 | 252 | 4.01e-27 | 103 |
| Msa0077880 | AT3G16500.1 | 31.140 | 228 | 97 | 7 | 7 | 174 | 25 | 252 | 4.26e-27 | 103 |
| Msa0077880 | AT5G25890.1 | 35.057 | 174 | 87 | 6 | 14 | 175 | 5 | 164 | 3.86e-26 | 98.6 |
| Msa0077880 | AT4G14550.4 | 42.384 | 151 | 51 | 7 | 11 | 125 | 1 | 151 | 7.56e-26 | 98.2 |
| Msa0077880 | AT1G51950.1 | 33.333 | 213 | 88 | 7 | 14 | 174 | 40 | 250 | 1.67e-25 | 99.4 |
| Msa0077880 | AT3G17600.1 | 38.710 | 124 | 62 | 3 | 56 | 171 | 37 | 154 | 2.74e-25 | 95.9 |
| Msa0077880 | AT3G23050.3 | 40.123 | 162 | 52 | 7 | 11 | 127 | 6 | 167 | 9.09e-25 | 94.7 |
| Msa0077880 | AT1G04100.1 | 38.788 | 165 | 50 | 4 | 65 | 178 | 95 | 259 | 3.06e-24 | 95.9 |
| Msa0077880 | AT2G46990.1 | 44.186 | 86 | 48 | 0 | 86 | 171 | 85 | 170 | 2.30e-20 | 83.6 |
| Msa0077880 | AT3G62100.1 | 45.349 | 86 | 47 | 0 | 86 | 171 | 83 | 168 | 2.57e-20 | 83.6 |
| Msa0077880 | AT1G80390.1 | 40.171 | 117 | 60 | 3 | 12 | 124 | 15 | 125 | 1.80e-18 | 77.4 |
| Msa0077880 | AT2G46990.2 | 45.205 | 73 | 40 | 0 | 86 | 158 | 85 | 157 | 3.06e-15 | 69.7 |
| Msa0077880 | AT3G62100.2 | 45.205 | 73 | 40 | 0 | 86 | 158 | 83 | 155 | 1.01e-14 | 68.2 |
| Msa0077880 | AT4G32280.2 | 34.884 | 86 | 51 | 2 | 86 | 171 | 118 | 198 | 3.05e-13 | 65.5 |
| Msa0077880 | AT4G32280.1 | 34.884 | 86 | 51 | 2 | 86 | 171 | 160 | 240 | 9.16e-13 | 64.7 |
| Msa0077880 | AT2G01200.2 | 38.614 | 101 | 59 | 2 | 76 | 175 | 89 | 187 | 1.73e-11 | 60.5 |
| Msa0077880 | AT2G01200.1 | 38.614 | 101 | 59 | 2 | 76 | 175 | 89 | 187 | 1.73e-11 | 60.5 |
| Msa0077880 | AT1G15050.2 | 37.778 | 90 | 53 | 2 | 87 | 175 | 62 | 149 | 6.27e-11 | 58.2 |
Find 56 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAACATTAATTAATTTC+TGG | 0.174082 | 1_2:+54937879 | Msa0077880:three_prime_UTR |
| TTACAAGAGGCTGAGGCTTC+TGG | 0.222165 | 1_2:+54937251 | Msa0077880:CDS |
| AACCTTTCTGCTTGTGTTAT+CGG | 0.235448 | 1_2:+54937733 | Msa0077880:three_prime_UTR |
| TTCTTCCTGTAAGATCTTAT+TGG | 0.258525 | 1_2:-54937224 | None:intergenic |
| AAGATTGATTTGAGGGTCTA+TGG | 0.290855 | 1_2:+54937317 | Msa0077880:CDS |
| TGCACAACTTCTTAAAGCTT+TGG | 0.324497 | 1_2:+54937346 | Msa0077880:CDS |
| CTATCTGAAGTTGTGCTCTA+AGG | 0.354793 | 1_2:+54937820 | Msa0077880:three_prime_UTR |
| CTTCTGAATTATTTGAAAGA+TGG | 0.355127 | 1_2:+54936893 | Msa0077880:exon |
| TAAATTTCTTTGTTATTGAA+TGG | 0.358362 | 1_2:+54938117 | Msa0077880:three_prime_UTR |
| TCCTTTGAAGTTTCAGTCAA+TGG | 0.366569 | 1_2:-54937029 | None:intergenic |
| GAATGAAAAGTGAAGTGTTT+TGG | 0.375005 | 1_2:+54937690 | Msa0077880:three_prime_UTR |
| TATGTGAAAGTGAGTTTAGA+TGG | 0.375233 | 1_2:+54937278 | Msa0077880:CDS |
| CCTTAGGAAGATTGATTTGA+GGG | 0.380707 | 1_2:+54937310 | Msa0077880:CDS |
| ACTTGCAGGGCTAAGATAGT+AGG | 0.383062 | 1_2:+54937194 | Msa0077880:intron |
| TACAAGAGGCTGAGGCTTCT+GGG | 0.384427 | 1_2:+54937252 | Msa0077880:CDS |
| GAGTTAAGATTAGGACTTCC+AGG | 0.392283 | 1_2:+54936960 | Msa0077880:CDS |
| CCATCTTTATCTTCATATGT+AGG | 0.415484 | 1_2:-54937437 | None:intergenic |
| TTCTGGTTACTTTAGCATCT+AGG | 0.421644 | 1_2:+54937896 | Msa0077880:three_prime_UTR |
| GGCCACCAATAAGATCTTAC+AGG | 0.438714 | 1_2:+54937219 | Msa0077880:CDS |
| CTTAGAGCACAACTTCAGAT+AGG | 0.438793 | 1_2:-54937819 | None:intergenic |
| GATGGTGATTGGATGTTAGT+TGG | 0.443053 | 1_2:+54937455 | Msa0077880:CDS |
| TAGATGGAGCTCCTTACCTT+AGG | 0.462831 | 1_2:+54937294 | Msa0077880:CDS |
| TTCCTGTAAGATCTTATTGG+TGG | 0.463988 | 1_2:-54937221 | None:intergenic |
| ACTGAAACTTCAAAGGATAG+TGG | 0.473190 | 1_2:+54937035 | Msa0077880:CDS |
| TCAAATGAAAGAGATAGAAA+AGG | 0.479155 | 1_2:+54938010 | Msa0077880:three_prime_UTR |
| ATGAAGATAAAGATGGTGAT+TGG | 0.480229 | 1_2:+54937444 | Msa0077880:CDS |
| CAAGAAAGAAAGTCCTTGTA+AGG | 0.484427 | 1_2:-54936870 | None:intergenic |
| AAGGCTACTGAGTTAAGATT+AGG | 0.488179 | 1_2:+54936951 | Msa0077880:CDS |
| TATCGGAAGAACTAAACAAA+TGG | 0.489024 | 1_2:+54937750 | Msa0077880:three_prime_UTR |
| ACCTTAGGAAGATTGATTTG+AGG | 0.502641 | 1_2:+54937309 | Msa0077880:CDS |
| CAAATGAAAGAGATAGAAAA+GGG | 0.511488 | 1_2:+54938011 | Msa0077880:three_prime_UTR |
| AAATCAATCTTCCTAAGGTA+AGG | 0.513222 | 1_2:-54937305 | None:intergenic |
| CTGAAGTTGTGCTCTAAGGA+AGG | 0.514838 | 1_2:+54937824 | Msa0077880:three_prime_UTR |
| CCCTCAAATCAATCTTCCTA+AGG | 0.515293 | 1_2:-54937310 | None:intergenic |
| TTCCGATAACACAAGCAGAA+AGG | 0.522135 | 1_2:-54937735 | None:intergenic |
| CCAGAAATTAATTAATGTTG+AGG | 0.525082 | 1_2:-54937879 | None:intergenic |
| TGTGCTCTAAGGAAGGGAAA+TGG | 0.525813 | 1_2:+54937831 | Msa0077880:three_prime_UTR |
| TGAAGTTGTGCTCTAAGGAA+GGG | 0.550378 | 1_2:+54937825 | Msa0077880:three_prime_UTR |
| ACAAGTGAATCAACCTTACA+AGG | 0.550779 | 1_2:+54936857 | Msa0077880:five_prime_UTR |
| CTTGCAGGGCTAAGATAGTA+GGG | 0.554533 | 1_2:+54937195 | Msa0077880:intron |
| GAACAGTTTACAAGAGGCTG+AGG | 0.558668 | 1_2:+54937244 | Msa0077880:CDS |
| ATATATGATGATAAAGGAGA+AGG | 0.564955 | 1_2:-54936763 | None:intergenic |
| TGTTAGTTGGAGATGTTCCA+TGG | 0.566837 | 1_2:+54937468 | Msa0077880:CDS |
| CCTACATATGAAGATAAAGA+TGG | 0.572828 | 1_2:+54937437 | Msa0077880:CDS |
| TGAGAATGATCTCAACATGA+AGG | 0.586923 | 1_2:+54936932 | Msa0077880:CDS |
| GATGGAAATACAAGAATGCA+AGG | 0.588783 | 1_2:-54936795 | None:intergenic |
| ACCATTGACTGAAACTTCAA+AGG | 0.590661 | 1_2:+54937028 | Msa0077880:CDS |
| GATGTTAAAGAGATGTGAGA+TGG | 0.591561 | 1_2:-54936813 | None:intergenic |
| ATTGATTTGAGGGTCTATGG+TGG | 0.593128 | 1_2:+54937320 | Msa0077880:CDS |
| CAGGAAGAACAGTTTACAAG+AGG | 0.599653 | 1_2:+54937238 | Msa0077880:CDS |
| AGTTAAGATTAGGACTTCCA+GGG | 0.616003 | 1_2:+54936961 | Msa0077880:CDS |
| GTTAGTTGGAGATGTTCCAT+GGG | 0.617620 | 1_2:+54937469 | Msa0077880:CDS |
| AGCATGTTCAAGTTAACCAT+AGG | 0.640019 | 1_2:+54937371 | Msa0077880:CDS |
| AAAAGACTAAGAATCATGAA+AGG | 0.648151 | 1_2:+54937623 | Msa0077880:CDS |
| ATGAAAGGAACAGAAGCTAG+AGG | 0.651214 | 1_2:+54937638 | Msa0077880:CDS |
| GCAGGGCTAAGATAGTAGGG+TGG | 0.770265 | 1_2:+54937198 | Msa0077880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATATATGATGATAA+AGG | - | chr1_2:54936772-54936791 | None:intergenic | 10.0% |
| !!! | TATTTTATATATGATGATAA+AGG | - | chr1_2:54936772-54936791 | None:intergenic | 10.0% |
| !! | AAAGTAAAAAAAAAAATCAG+TGG | - | chr1_2:54937953-54937972 | None:intergenic | 15.0% |
| !!! | TAAATTTCTTTGTTATTGAA+TGG | + | chr1_2:54938117-54938136 | Msa0077880:three_prime_UTR | 15.0% |
| !! | AAAGTAAAAAAAAAAATCAG+TGG | - | chr1_2:54937953-54937972 | None:intergenic | 15.0% |
| !!! | TAAATTTCTTTGTTATTGAA+TGG | + | chr1_2:54938117-54938136 | Msa0077880:three_prime_UTR | 15.0% |
| !! | TTTATAAGGTAGAAAGAAAA+AGG | - | chr1_2:54937132-54937151 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTACCTTATAA+AGG | + | chr1_2:54937131-54937150 | Msa0077880:intron | 20.0% |
| !!! | TTTTCTTTCTACCTTATAAA+GGG | + | chr1_2:54937132-54937151 | Msa0077880:intron | 20.0% |
| !! | TTTATAAGGTAGAAAGAAAA+AGG | - | chr1_2:54937132-54937151 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTACCTTATAA+AGG | + | chr1_2:54937131-54937150 | Msa0077880:intron | 20.0% |
| !!! | TTTTCTTTCTACCTTATAAA+GGG | + | chr1_2:54937132-54937151 | Msa0077880:intron | 20.0% |
| ! | CTTCTGAATTATTTGAAAGA+TGG | + | chr1_2:54936893-54936912 | Msa0077880:exon | 25.0% |
| !! | ATCTTTTGAACTTACTTTGA+AGG | - | chr1_2:54937089-54937108 | None:intergenic | 25.0% |
| !!! | AGAATATTTTTTTGACTTGC+AGG | + | chr1_2:54937180-54937199 | Msa0077880:intron | 25.0% |
| !!! | GAATATTTTTTTGACTTGCA+GGG | + | chr1_2:54937181-54937200 | Msa0077880:intron | 25.0% |
| !!! | TTTTTCAGAATAATCACCTA+TGG | - | chr1_2:54937390-54937409 | None:intergenic | 25.0% |
| ! | TCTGAAAAAGAAGGTTATAA+AGG | + | chr1_2:54937401-54937420 | Msa0077880:CDS | 25.0% |
| ! | GCATATATAGAGAGAAAAAA+AGG | - | chr1_2:54937502-54937521 | None:intergenic | 25.0% |
| ! | AAAAGACTAAGAATCATGAA+AGG | + | chr1_2:54937623-54937642 | Msa0077880:CDS | 25.0% |
| ! | CCAGAAATTAATTAATGTTG+AGG | - | chr1_2:54937882-54937901 | None:intergenic | 25.0% |
| ! | CCTCAACATTAATTAATTTC+TGG | + | chr1_2:54937879-54937898 | Msa0077880:three_prime_UTR | 25.0% |
| ! | TCAAATGAAAGAGATAGAAA+AGG | + | chr1_2:54938010-54938029 | Msa0077880:three_prime_UTR | 25.0% |
| ! | CAAATGAAAGAGATAGAAAA+GGG | + | chr1_2:54938011-54938030 | Msa0077880:three_prime_UTR | 25.0% |
| ! | CATCAATACAAGAAAAAACT+TGG | - | chr1_2:54938062-54938081 | None:intergenic | 25.0% |
| ! | CTTCTGAATTATTTGAAAGA+TGG | + | chr1_2:54936893-54936912 | Msa0077880:exon | 25.0% |
| !! | ATCTTTTGAACTTACTTTGA+AGG | - | chr1_2:54937089-54937108 | None:intergenic | 25.0% |
| !!! | AGAATATTTTTTTGACTTGC+AGG | + | chr1_2:54937180-54937199 | Msa0077880:intron | 25.0% |
| !!! | GAATATTTTTTTGACTTGCA+GGG | + | chr1_2:54937181-54937200 | Msa0077880:intron | 25.0% |
| !!! | TTTTTCAGAATAATCACCTA+TGG | - | chr1_2:54937390-54937409 | None:intergenic | 25.0% |
| ! | TCTGAAAAAGAAGGTTATAA+AGG | + | chr1_2:54937401-54937420 | Msa0077880:CDS | 25.0% |
| ! | GCATATATAGAGAGAAAAAA+AGG | - | chr1_2:54937502-54937521 | None:intergenic | 25.0% |
| ! | AAAAGACTAAGAATCATGAA+AGG | + | chr1_2:54937623-54937642 | Msa0077880:CDS | 25.0% |
| ! | CCAGAAATTAATTAATGTTG+AGG | - | chr1_2:54937882-54937901 | None:intergenic | 25.0% |
| ! | CCTCAACATTAATTAATTTC+TGG | + | chr1_2:54937879-54937898 | Msa0077880:three_prime_UTR | 25.0% |
| ! | TCAAATGAAAGAGATAGAAA+AGG | + | chr1_2:54938010-54938029 | Msa0077880:three_prime_UTR | 25.0% |
| ! | CAAATGAAAGAGATAGAAAA+GGG | + | chr1_2:54938011-54938030 | Msa0077880:three_prime_UTR | 25.0% |
| ! | CATCAATACAAGAAAAAACT+TGG | - | chr1_2:54938062-54938081 | None:intergenic | 25.0% |
| !! | TTTTGAACTTACTTTGAAGG+AGG | - | chr1_2:54937086-54937105 | None:intergenic | 30.0% |
| TTCTTCCTGTAAGATCTTAT+TGG | - | chr1_2:54937227-54937246 | None:intergenic | 30.0% | |
| TATGTGAAAGTGAGTTTAGA+TGG | + | chr1_2:54937278-54937297 | Msa0077880:CDS | 30.0% | |
| AAATCAATCTTCCTAAGGTA+AGG | - | chr1_2:54937308-54937327 | None:intergenic | 30.0% | |
| ! | GGTGATTATTCTGAAAAAGA+AGG | + | chr1_2:54937392-54937411 | Msa0077880:CDS | 30.0% |
| CCATCTTTATCTTCATATGT+AGG | - | chr1_2:54937440-54937459 | None:intergenic | 30.0% | |
| CCTACATATGAAGATAAAGA+TGG | + | chr1_2:54937437-54937456 | Msa0077880:CDS | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | + | chr1_2:54937444-54937463 | Msa0077880:CDS | 30.0% | |
| !! | GAATGAAAAGTGAAGTGTTT+TGG | + | chr1_2:54937690-54937709 | Msa0077880:three_prime_UTR | 30.0% |
| TATCGGAAGAACTAAACAAA+TGG | + | chr1_2:54937750-54937769 | Msa0077880:three_prime_UTR | 30.0% | |
| !! | TTTTGAACTTACTTTGAAGG+AGG | - | chr1_2:54937086-54937105 | None:intergenic | 30.0% |
| TTCTTCCTGTAAGATCTTAT+TGG | - | chr1_2:54937227-54937246 | None:intergenic | 30.0% | |
| TATGTGAAAGTGAGTTTAGA+TGG | + | chr1_2:54937278-54937297 | Msa0077880:CDS | 30.0% | |
| AAATCAATCTTCCTAAGGTA+AGG | - | chr1_2:54937308-54937327 | None:intergenic | 30.0% | |
| ! | GGTGATTATTCTGAAAAAGA+AGG | + | chr1_2:54937392-54937411 | Msa0077880:CDS | 30.0% |
| CCATCTTTATCTTCATATGT+AGG | - | chr1_2:54937440-54937459 | None:intergenic | 30.0% | |
| CCTACATATGAAGATAAAGA+TGG | + | chr1_2:54937437-54937456 | Msa0077880:CDS | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | + | chr1_2:54937444-54937463 | Msa0077880:CDS | 30.0% | |
| !! | GAATGAAAAGTGAAGTGTTT+TGG | + | chr1_2:54937690-54937709 | Msa0077880:three_prime_UTR | 30.0% |
| TATCGGAAGAACTAAACAAA+TGG | + | chr1_2:54937750-54937769 | Msa0077880:three_prime_UTR | 30.0% | |
| GATGGAAATACAAGAATGCA+AGG | - | chr1_2:54936798-54936817 | None:intergenic | 35.0% | |
| GATGTTAAAGAGATGTGAGA+TGG | - | chr1_2:54936816-54936835 | None:intergenic | 35.0% | |
| ACAAGTGAATCAACCTTACA+AGG | + | chr1_2:54936857-54936876 | Msa0077880:five_prime_UTR | 35.0% | |
| CAAGAAAGAAAGTCCTTGTA+AGG | - | chr1_2:54936873-54936892 | None:intergenic | 35.0% | |
| TGAGAATGATCTCAACATGA+AGG | + | chr1_2:54936932-54936951 | Msa0077880:CDS | 35.0% | |
| AAGGCTACTGAGTTAAGATT+AGG | + | chr1_2:54936951-54936970 | Msa0077880:CDS | 35.0% | |
| AGTTAAGATTAGGACTTCCA+GGG | + | chr1_2:54936961-54936980 | Msa0077880:CDS | 35.0% | |
| ! | TTCAGTCAATGGTCTTTTGT+TGG | - | chr1_2:54937021-54937040 | None:intergenic | 35.0% |
| ! | ACCATTGACTGAAACTTCAA+AGG | + | chr1_2:54937028-54937047 | Msa0077880:CDS | 35.0% |
| !! | TCCTTTGAAGTTTCAGTCAA+TGG | - | chr1_2:54937032-54937051 | None:intergenic | 35.0% |
| ACTGAAACTTCAAAGGATAG+TGG | + | chr1_2:54937035-54937054 | Msa0077880:CDS | 35.0% | |
| ACATCATGCAACCCTTTATA+AGG | - | chr1_2:54937146-54937165 | None:intergenic | 35.0% | |
| TTCCTGTAAGATCTTATTGG+TGG | - | chr1_2:54937224-54937243 | None:intergenic | 35.0% | |
| !! | ACCTTAGGAAGATTGATTTG+AGG | + | chr1_2:54937309-54937328 | Msa0077880:CDS | 35.0% |
| !! | CCTTAGGAAGATTGATTTGA+GGG | + | chr1_2:54937310-54937329 | Msa0077880:CDS | 35.0% |
| !! | AAGATTGATTTGAGGGTCTA+TGG | + | chr1_2:54937317-54937336 | Msa0077880:CDS | 35.0% |
| TGCACAACTTCTTAAAGCTT+TGG | + | chr1_2:54937346-54937365 | Msa0077880:CDS | 35.0% | |
| ! | AGCATGTTCAAGTTAACCAT+AGG | + | chr1_2:54937371-54937390 | Msa0077880:CDS | 35.0% |
| AAAAAAAGGACTTACTCCCA+TGG | - | chr1_2:54937488-54937507 | None:intergenic | 35.0% | |
| AACCTTTCTGCTTGTGTTAT+CGG | + | chr1_2:54937733-54937752 | Msa0077880:three_prime_UTR | 35.0% | |
| ! | TTCTGGTTACTTTAGCATCT+AGG | + | chr1_2:54937896-54937915 | Msa0077880:three_prime_UTR | 35.0% |
| GATGGAAATACAAGAATGCA+AGG | - | chr1_2:54936798-54936817 | None:intergenic | 35.0% | |
| GATGTTAAAGAGATGTGAGA+TGG | - | chr1_2:54936816-54936835 | None:intergenic | 35.0% | |
| ACAAGTGAATCAACCTTACA+AGG | + | chr1_2:54936857-54936876 | Msa0077880:five_prime_UTR | 35.0% | |
| CAAGAAAGAAAGTCCTTGTA+AGG | - | chr1_2:54936873-54936892 | None:intergenic | 35.0% | |
| TGAGAATGATCTCAACATGA+AGG | + | chr1_2:54936932-54936951 | Msa0077880:CDS | 35.0% | |
| AAGGCTACTGAGTTAAGATT+AGG | + | chr1_2:54936951-54936970 | Msa0077880:CDS | 35.0% | |
| AGTTAAGATTAGGACTTCCA+GGG | + | chr1_2:54936961-54936980 | Msa0077880:CDS | 35.0% | |
| ! | TTCAGTCAATGGTCTTTTGT+TGG | - | chr1_2:54937021-54937040 | None:intergenic | 35.0% |
| ! | ACCATTGACTGAAACTTCAA+AGG | + | chr1_2:54937028-54937047 | Msa0077880:CDS | 35.0% |
| !! | TCCTTTGAAGTTTCAGTCAA+TGG | - | chr1_2:54937032-54937051 | None:intergenic | 35.0% |
| ACTGAAACTTCAAAGGATAG+TGG | + | chr1_2:54937035-54937054 | Msa0077880:CDS | 35.0% | |
| ACATCATGCAACCCTTTATA+AGG | - | chr1_2:54937146-54937165 | None:intergenic | 35.0% | |
| TTCCTGTAAGATCTTATTGG+TGG | - | chr1_2:54937224-54937243 | None:intergenic | 35.0% | |
| !! | ACCTTAGGAAGATTGATTTG+AGG | + | chr1_2:54937309-54937328 | Msa0077880:CDS | 35.0% |
| !! | CCTTAGGAAGATTGATTTGA+GGG | + | chr1_2:54937310-54937329 | Msa0077880:CDS | 35.0% |
| !! | AAGATTGATTTGAGGGTCTA+TGG | + | chr1_2:54937317-54937336 | Msa0077880:CDS | 35.0% |
| TGCACAACTTCTTAAAGCTT+TGG | + | chr1_2:54937346-54937365 | Msa0077880:CDS | 35.0% | |
| ! | AGCATGTTCAAGTTAACCAT+AGG | + | chr1_2:54937371-54937390 | Msa0077880:CDS | 35.0% |
| AAAAAAAGGACTTACTCCCA+TGG | - | chr1_2:54937488-54937507 | None:intergenic | 35.0% | |
| AACCTTTCTGCTTGTGTTAT+CGG | + | chr1_2:54937733-54937752 | Msa0077880:three_prime_UTR | 35.0% | |
| ! | TTCTGGTTACTTTAGCATCT+AGG | + | chr1_2:54937896-54937915 | Msa0077880:three_prime_UTR | 35.0% |
| GAGTTAAGATTAGGACTTCC+AGG | + | chr1_2:54936960-54936979 | Msa0077880:CDS | 40.0% | |
| ! | TCTTCATTTTGTTCTGTCCC+TGG | - | chr1_2:54936981-54937000 | None:intergenic | 40.0% |
| CAGGAAGAACAGTTTACAAG+AGG | + | chr1_2:54937238-54937257 | Msa0077880:CDS | 40.0% | |
| CCCTCAAATCAATCTTCCTA+AGG | - | chr1_2:54937313-54937332 | None:intergenic | 40.0% | |
| !! | ATTGATTTGAGGGTCTATGG+TGG | + | chr1_2:54937320-54937339 | Msa0077880:CDS | 40.0% |
| GATGGTGATTGGATGTTAGT+TGG | + | chr1_2:54937455-54937474 | Msa0077880:CDS | 40.0% | |
| TGTTAGTTGGAGATGTTCCA+TGG | + | chr1_2:54937468-54937487 | Msa0077880:CDS | 40.0% | |
| GTTAGTTGGAGATGTTCCAT+GGG | + | chr1_2:54937469-54937488 | Msa0077880:CDS | 40.0% | |
| ATGAAAGGAACAGAAGCTAG+AGG | + | chr1_2:54937638-54937657 | Msa0077880:CDS | 40.0% | |
| !!! | AGTGAAGTGTTTTGGTGTGA+AGG | + | chr1_2:54937698-54937717 | Msa0077880:three_prime_UTR | 40.0% |
| !!! | GTGAAGTGTTTTGGTGTGAA+GGG | + | chr1_2:54937699-54937718 | Msa0077880:three_prime_UTR | 40.0% |
| TTCCGATAACACAAGCAGAA+AGG | - | chr1_2:54937738-54937757 | None:intergenic | 40.0% | |
| CTTAGAGCACAACTTCAGAT+AGG | - | chr1_2:54937822-54937841 | None:intergenic | 40.0% | |
| ! | CTATCTGAAGTTGTGCTCTA+AGG | + | chr1_2:54937820-54937839 | Msa0077880:three_prime_UTR | 40.0% |
| !! | TGAAGTTGTGCTCTAAGGAA+GGG | + | chr1_2:54937825-54937844 | Msa0077880:three_prime_UTR | 40.0% |
| GAGTTAAGATTAGGACTTCC+AGG | + | chr1_2:54936960-54936979 | Msa0077880:CDS | 40.0% | |
| ! | TCTTCATTTTGTTCTGTCCC+TGG | - | chr1_2:54936981-54937000 | None:intergenic | 40.0% |
| CAGGAAGAACAGTTTACAAG+AGG | + | chr1_2:54937238-54937257 | Msa0077880:CDS | 40.0% | |
| CCCTCAAATCAATCTTCCTA+AGG | - | chr1_2:54937313-54937332 | None:intergenic | 40.0% | |
| !! | ATTGATTTGAGGGTCTATGG+TGG | + | chr1_2:54937320-54937339 | Msa0077880:CDS | 40.0% |
| GATGGTGATTGGATGTTAGT+TGG | + | chr1_2:54937455-54937474 | Msa0077880:CDS | 40.0% | |
| TGTTAGTTGGAGATGTTCCA+TGG | + | chr1_2:54937468-54937487 | Msa0077880:CDS | 40.0% | |
| GTTAGTTGGAGATGTTCCAT+GGG | + | chr1_2:54937469-54937488 | Msa0077880:CDS | 40.0% | |
| ATGAAAGGAACAGAAGCTAG+AGG | + | chr1_2:54937638-54937657 | Msa0077880:CDS | 40.0% | |
| !!! | AGTGAAGTGTTTTGGTGTGA+AGG | + | chr1_2:54937698-54937717 | Msa0077880:three_prime_UTR | 40.0% |
| !!! | GTGAAGTGTTTTGGTGTGAA+GGG | + | chr1_2:54937699-54937718 | Msa0077880:three_prime_UTR | 40.0% |
| TTCCGATAACACAAGCAGAA+AGG | - | chr1_2:54937738-54937757 | None:intergenic | 40.0% | |
| CTTAGAGCACAACTTCAGAT+AGG | - | chr1_2:54937822-54937841 | None:intergenic | 40.0% | |
| ! | CTATCTGAAGTTGTGCTCTA+AGG | + | chr1_2:54937820-54937839 | Msa0077880:three_prime_UTR | 40.0% |
| !! | TGAAGTTGTGCTCTAAGGAA+GGG | + | chr1_2:54937825-54937844 | Msa0077880:three_prime_UTR | 40.0% |
| ACTTGCAGGGCTAAGATAGT+AGG | + | chr1_2:54937194-54937213 | Msa0077880:intron | 45.0% | |
| CTTGCAGGGCTAAGATAGTA+GGG | + | chr1_2:54937195-54937214 | Msa0077880:intron | 45.0% | |
| GGCCACCAATAAGATCTTAC+AGG | + | chr1_2:54937219-54937238 | Msa0077880:CDS | 45.0% | |
| GAACAGTTTACAAGAGGCTG+AGG | + | chr1_2:54937244-54937263 | Msa0077880:CDS | 45.0% | |
| TAGATGGAGCTCCTTACCTT+AGG | + | chr1_2:54937294-54937313 | Msa0077880:CDS | 45.0% | |
| !! | CTGAAGTTGTGCTCTAAGGA+AGG | + | chr1_2:54937824-54937843 | Msa0077880:three_prime_UTR | 45.0% |
| !! | TGTGCTCTAAGGAAGGGAAA+TGG | + | chr1_2:54937831-54937850 | Msa0077880:three_prime_UTR | 45.0% |
| ACTTGCAGGGCTAAGATAGT+AGG | + | chr1_2:54937194-54937213 | Msa0077880:intron | 45.0% | |
| CTTGCAGGGCTAAGATAGTA+GGG | + | chr1_2:54937195-54937214 | Msa0077880:intron | 45.0% | |
| GGCCACCAATAAGATCTTAC+AGG | + | chr1_2:54937219-54937238 | Msa0077880:CDS | 45.0% | |
| GAACAGTTTACAAGAGGCTG+AGG | + | chr1_2:54937244-54937263 | Msa0077880:CDS | 45.0% | |
| TAGATGGAGCTCCTTACCTT+AGG | + | chr1_2:54937294-54937313 | Msa0077880:CDS | 45.0% | |
| !! | CTGAAGTTGTGCTCTAAGGA+AGG | + | chr1_2:54937824-54937843 | Msa0077880:three_prime_UTR | 45.0% |
| !! | TGTGCTCTAAGGAAGGGAAA+TGG | + | chr1_2:54937831-54937850 | Msa0077880:three_prime_UTR | 45.0% |
| TTACAAGAGGCTGAGGCTTC+TGG | + | chr1_2:54937251-54937270 | Msa0077880:CDS | 50.0% | |
| TACAAGAGGCTGAGGCTTCT+GGG | + | chr1_2:54937252-54937271 | Msa0077880:CDS | 50.0% | |
| TTACAAGAGGCTGAGGCTTC+TGG | + | chr1_2:54937251-54937270 | Msa0077880:CDS | 50.0% | |
| TACAAGAGGCTGAGGCTTCT+GGG | + | chr1_2:54937252-54937271 | Msa0077880:CDS | 50.0% | |
| GCAGGGCTAAGATAGTAGGG+TGG | + | chr1_2:54937198-54937217 | Msa0077880:intron | 55.0% | |
| GCAGGGCTAAGATAGTAGGG+TGG | + | chr1_2:54937198-54937217 | Msa0077880:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 54936766 | 54938162 | 54936766 | ID=Msa0077880;Name=Msa0077880 |
| chr1_2 | mRNA | 54936766 | 54938162 | 54936766 | ID=Msa0077880-mRNA-1;Parent=Msa0077880;Name=Msa0077880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=146|1|1|1|1|1|3|495|178 |
| chr1_2 | exon | 54936766 | 54937093 | 54936766 | ID=Msa0077880-mRNA-1:exon:17107;Parent=Msa0077880-mRNA-1 |
| chr1_2 | exon | 54937202 | 54937492 | 54937202 | ID=Msa0077880-mRNA-1:exon:17108;Parent=Msa0077880-mRNA-1 |
| chr1_2 | exon | 54937604 | 54938162 | 54937604 | ID=Msa0077880-mRNA-1:exon:17109;Parent=Msa0077880-mRNA-1 |
| chr1_2 | five_prime_UTR | 54936766 | 54936911 | 54936766 | ID=Msa0077880-mRNA-1:five_prime_utr;Parent=Msa0077880-mRNA-1 |
| chr1_2 | CDS | 54936912 | 54937093 | 54936912 | ID=Msa0077880-mRNA-1:cds;Parent=Msa0077880-mRNA-1 |
| chr1_2 | CDS | 54937202 | 54937492 | 54937202 | ID=Msa0077880-mRNA-1:cds;Parent=Msa0077880-mRNA-1 |
| chr1_2 | CDS | 54937604 | 54937667 | 54937604 | ID=Msa0077880-mRNA-1:cds;Parent=Msa0077880-mRNA-1 |
| chr1_2 | three_prime_UTR | 54937668 | 54938162 | 54937668 | ID=Msa0077880-mRNA-1:three_prime_utr;Parent=Msa0077880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
