Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099190 | sp|Q84MC2|LOG8_ARATH | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.25e-125 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099190 | G7I9V5 | 99.533 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 2.44e-155 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0099190 | 0.811175 | 7.984536e-51 | -8.615850e-47 |
| Msa0008410 | Msa0099190 | 0.808552 | 2.927654e-50 | -8.615850e-47 |
| Msa0021810 | Msa0099190 | 0.824747 | 6.825250e-54 | -8.615850e-47 |
| Msa0032840 | Msa0099190 | -0.806318 | 8.718375e-50 | -8.615850e-47 |
| Msa0053570 | Msa0099190 | 0.983543 | 4.972005e-158 | -8.615850e-47 |
| Msa0055150 | Msa0099190 | 0.807443 | 5.042552e-50 | -8.615850e-47 |
| Msa0073670 | Msa0099190 | 0.804705 | 1.899796e-49 | -8.615850e-47 |
| Msa0074320 | Msa0099190 | 0.805410 | 1.352719e-49 | -8.615850e-47 |
| Msa0076000 | Msa0099190 | 0.820933 | 5.278089e-53 | -8.615850e-47 |
| Msa0092740 | Msa0099190 | -0.804502 | 2.094751e-49 | -8.615850e-47 |
| Msa0098740 | Msa0099190 | 0.808434 | 3.103860e-50 | -8.615850e-47 |
| Msa0099190 | Msa0137610 | -0.806181 | 9.318648e-50 | -8.615850e-47 |
| Msa0099190 | Msa0143430 | 0.805661 | 1.198701e-49 | -8.615850e-47 |
| Msa0099190 | Msa0174770 | 0.800137 | 1.659726e-48 | -8.615850e-47 |
| Msa0099190 | Msa0186890 | 0.817230 | 3.672757e-52 | -8.615850e-47 |
| Msa0099190 | Msa0187690 | 0.803722 | 3.043809e-49 | -8.615850e-47 |
| Msa0099190 | Msa0222920 | 0.849411 | 3.291141e-60 | -8.615850e-47 |
| Msa0099190 | Msa0230550 | -0.801146 | 1.033448e-48 | -8.615850e-47 |
| Msa0099190 | Msa0242680 | 0.830005 | 3.746676e-55 | -8.615850e-47 |
| Msa0099190 | Msa0264350 | 0.830064 | 3.624174e-55 | -8.615850e-47 |
| Msa0099190 | Msa0291520 | 0.808054 | 3.739800e-50 | -8.615850e-47 |
| Msa0099190 | Msa0294390 | 0.804548 | 2.048639e-49 | -8.615850e-47 |
| Msa0099190 | Msa0302450 | 0.835514 | 1.605686e-56 | -8.615850e-47 |
| Msa0099190 | Msa0355270 | 0.824692 | 7.031593e-54 | -8.615850e-47 |
| Msa0099190 | Msa0363620 | 0.805372 | 1.377860e-49 | -8.615850e-47 |
| Msa0099190 | Msa0367470 | 0.817762 | 2.786464e-52 | -8.615850e-47 |
| Msa0099190 | Msa0392940 | 0.833417 | 5.398719e-56 | -8.615850e-47 |
| Msa0099190 | Msa0394400 | 0.816660 | 4.932437e-52 | -8.615850e-47 |
| Msa0099190 | Msa0402330 | 0.812050 | 5.152244e-51 | -8.615850e-47 |
| Msa0099190 | Msa0413450 | 0.826435 | 2.716887e-54 | -8.615850e-47 |
| Msa0099190 | Msa0416400 | 0.832158 | 1.108565e-55 | -8.615850e-47 |
| Msa0099190 | Msa0437690 | -0.805430 | 1.339867e-49 | -8.615850e-47 |
| Msa0099190 | Msa0469910 | -0.817439 | 3.295540e-52 | -8.615850e-47 |
| Msa0099190 | Msa0505150 | 0.828801 | 7.343790e-55 | -8.615850e-47 |
| Msa0099190 | Msa0508590 | 0.800794 | 1.219236e-48 | -8.615850e-47 |
| Msa0099190 | Msa0525340 | 0.809163 | 2.167043e-50 | -8.615850e-47 |
| Msa0099190 | Msa0541860 | 0.817064 | 4.001703e-52 | -8.615850e-47 |
| Msa0099190 | Msa0542160 | 0.810846 | 9.408113e-51 | -8.615850e-47 |
| Msa0099190 | Msa0552810 | 0.813963 | 1.961137e-51 | -8.615850e-47 |
| Msa0099190 | Msa0581070 | 0.804890 | 1.738210e-49 | -8.615850e-47 |
| Msa0099190 | Msa0623700 | 0.808704 | 2.717923e-50 | -8.615850e-47 |
| Msa0099190 | Msa0639120 | 0.805692 | 1.180594e-49 | -8.615850e-47 |
| Msa0099190 | Msa0687630 | 0.840312 | 9.379210e-58 | -8.615850e-47 |
| Msa0099190 | Msa0692080 | 0.816813 | 4.557841e-52 | -8.615850e-47 |
| Msa0099190 | Msa0702340 | 0.841019 | 6.124867e-58 | -8.615850e-47 |
| Msa0099190 | Msa0702590 | 0.831428 | 1.678756e-55 | -8.615850e-47 |
| Msa0099190 | Msa0702660 | 0.840189 | 1.010190e-57 | -8.615850e-47 |
| Msa0099190 | Msa0703230 | 0.815238 | 1.024211e-51 | -8.615850e-47 |
| Msa0099190 | Msa0707390 | 0.812032 | 5.198043e-51 | -8.615850e-47 |
| Msa0099190 | Msa0709780 | 0.800595 | 1.338704e-48 | -8.615850e-47 |
| Msa0099190 | Msa0750920 | 0.831733 | 1.412196e-55 | -8.615850e-47 |
| Msa0099190 | Msa0823090 | 0.801644 | 8.168316e-49 | -8.615850e-47 |
| Msa0099190 | Msa0824640 | 0.822916 | 1.833838e-53 | -8.615850e-47 |
| Msa0099190 | Msa0864010 | 0.821739 | 3.440131e-53 | -8.615850e-47 |
| Msa0099190 | Msa0966270 | 0.855006 | 8.424121e-62 | -8.615850e-47 |
| Msa0099190 | Msa1040890 | 0.810073 | 1.381960e-50 | -8.615850e-47 |
| Msa0099190 | Msa1082700 | 0.854190 | 1.451516e-61 | -8.615850e-47 |
| Msa0099190 | Msa1083210 | 0.819016 | 1.448994e-52 | -8.615850e-47 |
| Msa0099190 | Msa1126770 | 0.817510 | 3.176732e-52 | -8.615850e-47 |
| Msa0099190 | Msa1127830 | 0.812996 | 3.200590e-51 | -8.615850e-47 |
| Msa0099190 | Msa1127890 | 0.806212 | 9.178135e-50 | -8.615850e-47 |
| Msa0099190 | Msa1165870 | 0.803443 | 3.477883e-49 | -8.615850e-47 |
| Msa0099190 | Msa1184370 | 0.826813 | 2.207784e-54 | -8.615850e-47 |
| Msa0099190 | Msa1201830 | 0.817231 | 3.670602e-52 | -8.615850e-47 |
| Msa0099190 | Msa1208890 | -0.822806 | 1.945348e-53 | -8.615850e-47 |
| Msa0099190 | Msa1224840 | 0.840038 | 1.106216e-57 | -8.615850e-47 |
| Msa0099190 | Msa1227690 | 0.825889 | 3.664617e-54 | -8.615850e-47 |
| Msa0099190 | Msa1245940 | -0.810066 | 1.386284e-50 | -8.615850e-47 |
| Msa0099190 | Msa1254710 | 0.807404 | 5.139144e-50 | -8.615850e-47 |
| Msa0099190 | Msa1259070 | -0.814857 | 1.244091e-51 | -8.615850e-47 |
| Msa0099190 | Msa1283990 | 0.800129 | 1.665703e-48 | -8.615850e-47 |
| Msa0099190 | Msa1292830 | 0.816010 | 6.893587e-52 | -8.615850e-47 |
| Msa0099190 | Msa1294840 | 0.820295 | 7.398914e-53 | -8.615850e-47 |
| Msa0099190 | Msa1307950 | 0.825910 | 3.621964e-54 | -8.615850e-47 |
| Msa0099190 | Msa1310690 | 0.803668 | 3.122965e-49 | -8.615850e-47 |
| Msa0099190 | Msa1316780 | 0.807683 | 4.484023e-50 | -8.615850e-47 |
| Msa0099190 | Msa1316830 | 0.826394 | 2.779483e-54 | -8.615850e-47 |
| Msa0099190 | Msa1365150 | 0.842787 | 2.088522e-58 | -8.615850e-47 |
| Msa0099190 | Msa1367880 | 0.829668 | 4.526819e-55 | -8.615850e-47 |
| Msa0099190 | Msa1370860 | 0.804739 | 1.869504e-49 | -8.615850e-47 |
| Msa0099190 | Msa1373330 | 0.808268 | 3.366979e-50 | -8.615850e-47 |
| Msa0099190 | Msa1385070 | 0.948371 | 1.078165e-106 | -8.615850e-47 |
| Msa0099190 | Msa1389680 | 0.800238 | 1.582563e-48 | -8.615850e-47 |
| Msa0099190 | Msa1397810 | 0.809814 | 1.570634e-50 | -8.615850e-47 |
| Msa0099190 | Msa1400610 | -0.820342 | 7.214814e-53 | -8.615850e-47 |
| Msa0099190 | Msa1404190 | 0.820017 | 8.563596e-53 | -8.615850e-47 |
| Msa0099190 | Msa1435750 | 0.817372 | 3.411592e-52 | -8.615850e-47 |
| Msa0099190 | Msa1438640 | 0.836551 | 8.755662e-57 | -8.615850e-47 |
| Msa0099190 | Msa1442850 | 0.852244 | 5.242642e-61 | -8.615850e-47 |
| Msa0099190 | Msa1465080 | 0.815094 | 1.102353e-51 | -8.615850e-47 |
| Msa0099190 | Msa1466990 | 0.821784 | 3.358269e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099190 | MtrunA17_Chr1g0151201 | 98.611 | 216 | 1 | 1 | 1 | 214 | 1 | 216 | 3.90e-157 | 433 |
| Msa0099190 | MtrunA17_Chr1g0181131 | 66.990 | 206 | 68 | 0 | 7 | 212 | 11 | 216 | 2.16e-103 | 297 |
| Msa0099190 | MtrunA17_Chr7g0264181 | 67.327 | 202 | 66 | 0 | 7 | 208 | 12 | 213 | 9.58e-103 | 296 |
| Msa0099190 | MtrunA17_Chr2g0326841 | 68.687 | 198 | 62 | 0 | 7 | 204 | 11 | 208 | 1.23e-102 | 295 |
| Msa0099190 | MtrunA17_Chr4g0028871 | 69.036 | 197 | 61 | 0 | 8 | 204 | 12 | 208 | 2.34e-102 | 294 |
| Msa0099190 | MtrunA17_Chr3g0142491 | 69.036 | 197 | 61 | 0 | 7 | 203 | 13 | 209 | 8.73e-101 | 291 |
| Msa0099190 | MtrunA17_Chr1g0177391 | 62.441 | 213 | 79 | 1 | 1 | 213 | 1 | 212 | 7.82e-98 | 283 |
| Msa0099190 | MtrunA17_Chr1g0156401 | 58.929 | 112 | 25 | 1 | 36 | 126 | 1 | 112 | 9.91e-39 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099190 | AT5G11950.1 | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.29e-126 | 355 |
| Msa0099190 | AT5G11950.2 | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.29e-126 | 355 |
| Msa0099190 | AT5G11950.3 | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.29e-126 | 355 |
| Msa0099190 | AT2G28305.1 | 69.756 | 205 | 62 | 0 | 7 | 211 | 6 | 210 | 1.76e-107 | 308 |
| Msa0099190 | AT2G37210.1 | 65.854 | 205 | 69 | 1 | 7 | 211 | 12 | 215 | 2.25e-103 | 297 |
| Msa0099190 | AT5G06300.1 | 63.551 | 214 | 77 | 1 | 1 | 213 | 1 | 214 | 4.14e-101 | 292 |
| Msa0099190 | AT3G53450.1 | 66.162 | 198 | 67 | 0 | 7 | 204 | 12 | 209 | 6.59e-100 | 289 |
| Msa0099190 | AT2G37210.2 | 58.515 | 229 | 70 | 2 | 7 | 211 | 12 | 239 | 2.36e-97 | 283 |
| Msa0099190 | AT2G28305.3 | 73.034 | 178 | 48 | 0 | 7 | 184 | 6 | 183 | 7.38e-97 | 280 |
| Msa0099190 | AT5G11950.4 | 81.875 | 160 | 29 | 0 | 53 | 212 | 1 | 160 | 5.74e-96 | 277 |
| Msa0099190 | AT2G35990.1 | 62.500 | 200 | 75 | 0 | 1 | 200 | 1 | 200 | 7.60e-95 | 276 |
| Msa0099190 | AT5G03270.1 | 66.310 | 187 | 63 | 0 | 5 | 191 | 15 | 201 | 2.43e-93 | 271 |
| Msa0099190 | AT4G35190.1 | 62.069 | 203 | 77 | 0 | 1 | 203 | 1 | 203 | 1.09e-91 | 268 |
| Msa0099190 | AT5G03270.2 | 67.033 | 182 | 60 | 0 | 5 | 186 | 15 | 196 | 5.34e-91 | 265 |
| Msa0099190 | AT4G35190.2 | 63.918 | 194 | 68 | 1 | 1 | 194 | 1 | 192 | 1.63e-87 | 257 |
| Msa0099190 | AT2G28305.2 | 73.134 | 134 | 36 | 0 | 7 | 140 | 6 | 139 | 4.68e-71 | 213 |
| Msa0099190 | AT2G35990.3 | 60.135 | 148 | 59 | 0 | 53 | 200 | 1 | 148 | 2.42e-64 | 196 |
| Msa0099190 | AT2G35990.2 | 60.135 | 148 | 59 | 0 | 53 | 200 | 1 | 148 | 2.42e-64 | 196 |
| Msa0099190 | AT5G26140.2 | 66.225 | 151 | 29 | 1 | 80 | 208 | 6 | 156 | 3.18e-62 | 191 |
| Msa0099190 | AT5G26140.1 | 63.504 | 137 | 28 | 1 | 94 | 208 | 1 | 137 | 7.09e-53 | 167 |
| Msa0099190 | AT5G26140.3 | 69.608 | 102 | 31 | 0 | 107 | 208 | 21 | 122 | 2.81e-46 | 149 |
Find 77 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATAGATTTGGTTTA+TGG | 0.161614 | 1_3:+5270633 | Msa0099190:CDS |
| CATCTTCAACATAAGTTCTT+TGG | 0.223030 | 1_3:-5272143 | None:intergenic |
| TGGAACTATGGAAGAGCTTC+TGG | 0.266363 | 1_3:+5271874 | Msa0099190:CDS |
| TCCTCATAATCAGGAGGATA+TGG | 0.292672 | 1_3:+5271854 | Msa0099190:intron |
| TTTATCTGTAATTTCAAATC+TGG | 0.308290 | 1_3:-5273263 | None:intergenic |
| AATGGTGGTTGTCATGTTCT+AGG | 0.326103 | 1_3:+5270702 | Msa0099190:CDS |
| TCATGCGGCATGAGAGCTTT+TGG | 0.330366 | 1_3:-5271099 | None:intergenic |
| TGGTGGAAGTGTTGGATTGA+TGG | 0.341974 | 1_3:+5270656 | Msa0099190:CDS |
| CTTGTATACATTTCAAGTTA+TGG | 0.357366 | 1_3:-5272917 | None:intergenic |
| ACTGTAAGACAGTCAAAATT+TGG | 0.362300 | 1_3:+5273053 | Msa0099190:three_prime_UTR |
| ATAAGCTTGTAAACAACCTT+TGG | 0.365272 | 1_3:-5273312 | None:intergenic |
| GGTTAAGAGGAACATAGATT+TGG | 0.375088 | 1_3:+5270626 | Msa0099190:intron |
| CCAATGGAACAATAACAATA+AGG | 0.376120 | 1_3:-5269990 | None:intergenic |
| GGTGGAAGTGTTGGATTGAT+GGG | 0.382799 | 1_3:+5270657 | Msa0099190:CDS |
| CCTTATTGTTATTGTTCCAT+TGG | 0.386081 | 1_3:+5269990 | Msa0099190:five_prime_UTR |
| ACTGAAAACATGGCGGTTGC+CGG | 0.398415 | 1_3:-5270173 | None:intergenic |
| CATAGTAACAAAACAACATT+TGG | 0.403897 | 1_3:-5272957 | None:intergenic |
| ATCATGGCCAACCTAGAGTT+TGG | 0.407842 | 1_3:+5273285 | Msa0099190:three_prime_UTR |
| GAAATGTATACAAGAATTGC+TGG | 0.411965 | 1_3:+5272926 | Msa0099190:three_prime_UTR |
| GGTTTGTGTTTCAGGTTAAG+AGG | 0.417871 | 1_3:+5270613 | Msa0099190:intron |
| AGCTGGCAGATGAAGCAATT+AGG | 0.429412 | 1_3:+5272812 | Msa0099190:CDS |
| ATCAGGAGGATATGGAACTA+TGG | 0.439372 | 1_3:+5271862 | Msa0099190:intron |
| ATAGATTTGGTTTATGGTGG+TGG | 0.456028 | 1_3:+5270639 | Msa0099190:CDS |
| AAGGAAGCAGAAAGTTCAAA+AGG | 0.460142 | 1_3:+5270125 | Msa0099190:CDS |
| AACATAGATTTGGTTTATGG+TGG | 0.467733 | 1_3:+5270636 | Msa0099190:CDS |
| GTTTATGGTGGTGGAAGTGT+TGG | 0.468866 | 1_3:+5270648 | Msa0099190:CDS |
| ATGCTTTATTTATAAATGAA+AGG | 0.471976 | 1_3:-5270027 | None:intergenic |
| ATGCAGAATGAAGCTTTGAT+TGG | 0.473098 | 1_3:+5272855 | Msa0099190:exon |
| TTGAAATTACAGATAAATCA+TGG | 0.473773 | 1_3:+5273269 | Msa0099190:three_prime_UTR |
| AGCTTCTGGAGATGATAACT+TGG | 0.479259 | 1_3:+5271888 | Msa0099190:CDS |
| GTCTTCTGCGGCAGCAACTC+CGG | 0.499932 | 1_3:+5270154 | Msa0099190:CDS |
| TGGTTTGCCAAACTCTAGGT+TGG | 0.503294 | 1_3:-5273292 | None:intergenic |
| CCTTTGGTTTGCCAAACTCT+AGG | 0.503882 | 1_3:-5273296 | None:intergenic |
| ATGATAACTTGGGCTCAACT+TGG | 0.508240 | 1_3:+5271899 | Msa0099190:CDS |
| GACAACTATACTCCGAGCAC+TGG | 0.509009 | 1_3:-5272107 | None:intergenic |
| ATACAAGAATTGCTGGAGAT+GGG | 0.509329 | 1_3:+5272933 | Msa0099190:three_prime_UTR |
| CATGAGGGGCTACATGCTCA+TGG | 0.510740 | 1_3:-5272787 | None:intergenic |
| TATACAAGAATTGCTGGAGA+TGG | 0.513114 | 1_3:+5272932 | Msa0099190:three_prime_UTR |
| GTGAAGCAGTAGGTGAAGTA+AGG | 0.514214 | 1_3:+5271570 | Msa0099190:CDS |
| ATGGTGGTTGTCATGTTCTA+GGG | 0.515119 | 1_3:+5270703 | Msa0099190:CDS |
| TTCATCTGCCAGCTCTCATG+AGG | 0.517501 | 1_3:-5272803 | None:intergenic |
| AAGTTCATCTGCTAATTGAA+TGG | 0.518634 | 1_3:-5270203 | None:intergenic |
| GTTGGCCTACTGAATGTTGA+TGG | 0.518897 | 1_3:+5272025 | Msa0099190:CDS |
| TCATCTGCCAGCTCTCATGA+GGG | 0.519557 | 1_3:-5272802 | None:intergenic |
| TTTGACAATGGTGTTGAAGA+AGG | 0.519647 | 1_3:+5272073 | Msa0099190:CDS |
| CAGAATGAAGCTTTGATTGG+TGG | 0.526120 | 1_3:+5272858 | Msa0099190:exon |
| CAAAGAACTTATGTTGAAGA+TGG | 0.528044 | 1_3:+5272144 | Msa0099190:CDS |
| TTGCTTGCATTGTTTGACAA+TGG | 0.530752 | 1_3:+5272061 | Msa0099190:CDS |
| CAAATCTGGTCACAACATAG+TGG | 0.552235 | 1_3:-5273249 | None:intergenic |
| AGGAAGCAGAAAGTTCAAAA+GGG | 0.552817 | 1_3:+5270126 | Msa0099190:CDS |
| AGAACTTATGTTGAAGATGG+AGG | 0.558261 | 1_3:+5272147 | Msa0099190:CDS |
| ATGAAGCTTTGATTGGTGGA+AGG | 0.560276 | 1_3:+5272862 | Msa0099190:exon |
| ATGTAGCCCCTCATGAGAGC+TGG | 0.566155 | 1_3:+5272795 | Msa0099190:CDS |
| CAGATATCTGGTGAAGCAGT+AGG | 0.570380 | 1_3:+5271560 | Msa0099190:intron |
| TGCAATGGCTCAAGAAGCTG+AGG | 0.570924 | 1_3:+5271622 | Msa0099190:CDS |
| GGAAAGTAATGTAACACCAA+TGG | 0.572209 | 1_3:-5270006 | None:intergenic |
| AAGCAATTAGGCAATTATCC+AGG | 0.578634 | 1_3:+5272824 | Msa0099190:CDS |
| TGCTCTAATATCTACTGAGG+TGG | 0.580742 | 1_3:+5273224 | Msa0099190:three_prime_UTR |
| GAGGCATTTATTGCACTCCC+TGG | 0.581953 | 1_3:+5271641 | Msa0099190:CDS |
| CCTAGAGTTTGGCAAACCAA+AGG | 0.589779 | 1_3:+5273296 | Msa0099190:three_prime_UTR |
| TACAAGAATTGCTGGAGATG+GGG | 0.592741 | 1_3:+5272934 | Msa0099190:three_prime_UTR |
| ACAACTATACTCCGAGCACT+GGG | 0.596880 | 1_3:-5272106 | None:intergenic |
| TGGCGGCGTCACTGAAAACA+TGG | 0.602579 | 1_3:-5270183 | None:intergenic |
| GCATGAGAGAAAAGCTGCAA+TGG | 0.603274 | 1_3:+5271607 | Msa0099190:CDS |
| ATGAGGGGCTACATGCTCAT+GGG | 0.605666 | 1_3:-5272786 | None:intergenic |
| AAAAGCTCTCATGCCGCATG+AGG | 0.606750 | 1_3:+5271101 | Msa0099190:CDS |
| CATCTGCCAGCTCTCATGAG+GGG | 0.620200 | 1_3:-5272801 | None:intergenic |
| AGTAACCATCAACATTCAGT+AGG | 0.622543 | 1_3:-5272030 | None:intergenic |
| GCTTCTGGAGATGATAACTT+GGG | 0.623818 | 1_3:+5271889 | Msa0099190:CDS |
| GCTTCATTAAGCCCAGTGCT+CGG | 0.625476 | 1_3:+5272095 | Msa0099190:CDS |
| GGGGCTACATGCTCATGGGA+AGG | 0.637642 | 1_3:-5272782 | None:intergenic |
| TACAAGCTTATGACAATGAG+TGG | 0.651411 | 1_3:+5273324 | Msa0099190:three_prime_UTR |
| AGTAGCACAAATACCTCATG+CGG | 0.657014 | 1_3:-5271114 | None:intergenic |
| TTCATCTGCTAATTGAATGG+CGG | 0.661275 | 1_3:-5270200 | None:intergenic |
| AATTGCTCTAATATCTACTG+AGG | 0.684860 | 1_3:+5273221 | Msa0099190:three_prime_UTR |
| AAAAGGGTATGTGTCTTCTG+CGG | 0.690009 | 1_3:+5270142 | Msa0099190:CDS |
| CGGCGTCACTGAAAACATGG+CGG | 0.784838 | 1_3:-5270180 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAATA+AGG | - | chr1_3:5272197-5272216 | None:intergenic | 0.0% |
| !!! | ATGCTTTATTTATAAATGAA+AGG | - | chr1_3:5270030-5270049 | None:intergenic | 15.0% |
| !!! | TTTTTATATAAAAGTGTATC+TGG | + | chr1_3:5270335-5270354 | Msa0099190:intron | 15.0% |
| !!! | TTTTATATAAAAGTGTATCT+GGG | + | chr1_3:5270336-5270355 | Msa0099190:intron | 15.0% |
| !!! | TTTTTATGTGTTTTGTTTTA+TGG | + | chr1_3:5270592-5270611 | Msa0099190:intron | 15.0% |
| !! | ATATCTCAAAAAATGTATAA+TGG | + | chr1_3:5270684-5270703 | Msa0099190:CDS | 15.0% |
| !! | TAATAATAATAAGGTAAAAG+TGG | - | chr1_3:5272188-5272207 | None:intergenic | 15.0% |
| !!! | TTTTGAATCATTTCATTTAT+TGG | + | chr1_3:5273020-5273039 | Msa0099190:three_prime_UTR | 15.0% |
| !!! | CTTTTTTTTTTTTCTCTTTG+TGG | - | chr1_3:5270066-5270085 | None:intergenic | 20.0% |
| !!! | ACTGTATTTTTCTTAATCTT+TGG | + | chr1_3:5270267-5270286 | Msa0099190:intron | 20.0% |
| !!! | AGAGAATATTTGCTTTTTTT+GGG | + | chr1_3:5270373-5270392 | Msa0099190:intron | 20.0% |
| !! | ATAAGTGTTTATATGCTATA+AGG | - | chr1_3:5270813-5270832 | None:intergenic | 20.0% |
| !!! | CTTGTAATTTCTTATTTGTA+TGG | - | chr1_3:5271326-5271345 | None:intergenic | 20.0% |
| !! | TTGGATAAACAACTTAATTA+AGG | + | chr1_3:5272331-5272350 | Msa0099190:intron | 20.0% |
| !! | TGGATAAACAACTTAATTAA+GGG | + | chr1_3:5272332-5272351 | Msa0099190:intron | 20.0% |
| !! | AATAAGCTTAAAACATCTTA+TGG | + | chr1_3:5272436-5272455 | Msa0099190:intron | 20.0% |
| !!! | AACTTTTTGAGTTTGAAAAT+TGG | - | chr1_3:5272662-5272681 | None:intergenic | 20.0% |
| !! | TCTGATATTGTGTTAATTAA+AGG | + | chr1_3:5272721-5272740 | Msa0099190:intron | 20.0% |
| !! | TTTATCTGTAATTTCAAATC+TGG | - | chr1_3:5273266-5273285 | None:intergenic | 20.0% |
| !! | TTGAAATTACAGATAAATCA+TGG | + | chr1_3:5273269-5273288 | Msa0099190:three_prime_UTR | 20.0% |
| !!! | AAGAAAGAATCGATTTTGAA+TGG | + | chr1_3:5270099-5270118 | Msa0099190:exon | 25.0% |
| !!! | CAGAGAATATTTGCTTTTTT+TGG | + | chr1_3:5270372-5270391 | Msa0099190:intron | 25.0% |
| ! | AAACATTAACATTTCACACA+TGG | - | chr1_3:5270507-5270526 | None:intergenic | 25.0% |
| ! | TCTCAAAAAATGTATAATGG+TGG | + | chr1_3:5270687-5270706 | Msa0099190:CDS | 25.0% |
| ! | AATAACACAGATCTTACAAA+GGG | - | chr1_3:5271028-5271047 | None:intergenic | 25.0% |
| !! | TTTGATAATAGTTTATCGTC+TGG | + | chr1_3:5271235-5271254 | Msa0099190:intron | 25.0% |
| ! | TTATGACATTTGACAATCAA+AGG | + | chr1_3:5271268-5271287 | Msa0099190:intron | 25.0% |
| ! | TGAACTAACTACTATCATAA+AGG | - | chr1_3:5271466-5271485 | None:intergenic | 25.0% |
| !!! | TTCTTTTATTTTTCGTGCAT+TGG | + | chr1_3:5271772-5271791 | Msa0099190:intron | 25.0% |
| !!! | TCTTTTATTTTTCGTGCATT+GGG | + | chr1_3:5271773-5271792 | Msa0099190:intron | 25.0% |
| ! | ACTTGGAATTCATAAAAAAC+CGG | + | chr1_3:5271916-5271935 | Msa0099190:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr1_3:5272328-5272347 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1_3:5272329-5272348 | None:intergenic | 25.0% |
| !! | TTTTCATGAGACTTGATATA+GGG | - | chr1_3:5272524-5272543 | None:intergenic | 25.0% |
| !! | ATTTTCATGAGACTTGATAT+AGG | - | chr1_3:5272525-5272544 | None:intergenic | 25.0% |
| !! | TGTAGTGTGATAATGTTAAT+AGG | + | chr1_3:5272589-5272608 | Msa0099190:intron | 25.0% |
| ! | AGAGTAATGTAAATTACTGT+TGG | - | chr1_3:5272704-5272723 | None:intergenic | 25.0% |
| !!! | CTTGTATACATTTCAAGTTA+TGG | - | chr1_3:5272920-5272939 | None:intergenic | 25.0% |
| ! | CATAGTAACAAAACAACATT+TGG | - | chr1_3:5272960-5272979 | None:intergenic | 25.0% |
| !!! | TGTTGATTTTTATGAAGTGA+CGG | + | chr1_3:5272980-5272999 | Msa0099190:three_prime_UTR | 25.0% |
| !!! | AATCGAGAAATTTTAAGTTG+TGG | + | chr1_3:5273142-5273161 | Msa0099190:three_prime_UTR | 25.0% |
| !!! | ATCGAGAAATTTTAAGTTGT+GGG | + | chr1_3:5273143-5273162 | Msa0099190:three_prime_UTR | 25.0% |
| !!! | GAGTTTATTTGACTTTTAGT+CGG | + | chr1_3:5273195-5273214 | Msa0099190:three_prime_UTR | 25.0% |
| !!! | AGTTTATTTGACTTTTAGTC+GGG | + | chr1_3:5273196-5273215 | Msa0099190:three_prime_UTR | 25.0% |
| CCAATGGAACAATAACAATA+AGG | - | chr1_3:5269993-5270012 | None:intergenic | 30.0% | |
| ! | CCTTATTGTTATTGTTCCAT+TGG | + | chr1_3:5269990-5270009 | Msa0099190:five_prime_UTR | 30.0% |
| !! | AAAGAATCGATTTTGAATGG+AGG | + | chr1_3:5270102-5270121 | Msa0099190:exon | 30.0% |
| AAGTTCATCTGCTAATTGAA+TGG | - | chr1_3:5270206-5270225 | None:intergenic | 30.0% | |
| ! | ATATAAAAGTGTATCTGGGT+AGG | + | chr1_3:5270340-5270359 | Msa0099190:intron | 30.0% |
| ! | GTGTACAGAAACATTGATTA+AGG | + | chr1_3:5270554-5270573 | Msa0099190:intron | 30.0% |
| !! | TGTTTTATGGTTTGTGTTTC+AGG | + | chr1_3:5270605-5270624 | Msa0099190:intron | 30.0% |
| ! | AGGAACATAGATTTGGTTTA+TGG | + | chr1_3:5270633-5270652 | Msa0099190:CDS | 30.0% |
| ! | AACATAGATTTGGTTTATGG+TGG | + | chr1_3:5270636-5270655 | Msa0099190:CDS | 30.0% |
| ! | GTTGTTGATTGATATCACTT+TGG | + | chr1_3:5270758-5270777 | Msa0099190:intron | 30.0% |
| ATAAGTTGTTTATCCGAACA+GGG | - | chr1_3:5270784-5270803 | None:intergenic | 30.0% | |
| AATAAGTTGTTTATCCGAAC+AGG | - | chr1_3:5270785-5270804 | None:intergenic | 30.0% | |
| CAATAACACAGATCTTACAA+AGG | - | chr1_3:5271029-5271048 | None:intergenic | 30.0% | |
| AATGTAGAGTAGTACATATC+AGG | - | chr1_3:5271067-5271086 | None:intergenic | 30.0% | |
| ATGTACTACTCTACATTTAC+AGG | + | chr1_3:5271070-5271089 | Msa0099190:intron | 30.0% | |
| TGTACTACTCTACATTTACA+GGG | + | chr1_3:5271071-5271090 | Msa0099190:intron | 30.0% | |
| TAACACTATAACAGTTACAC+AGG | - | chr1_3:5271144-5271163 | None:intergenic | 30.0% | |
| !!! | CTATTGATTTTCGTTCTACA+CGG | + | chr1_3:5271177-5271196 | Msa0099190:intron | 30.0% |
| TTTGATCTCTAGCAATGAAT+TGG | + | chr1_3:5271206-5271225 | Msa0099190:intron | 30.0% | |
| AAATTACAAGAATGTTAGCG+AGG | + | chr1_3:5271336-5271355 | Msa0099190:intron | 30.0% | |
| AATTACAAGAATGTTAGCGA+GGG | + | chr1_3:5271337-5271356 | Msa0099190:intron | 30.0% | |
| ! | TCTTCTGATAATGACCTATT+TGG | + | chr1_3:5271423-5271442 | Msa0099190:intron | 30.0% |
| ! | CTTCTGATAATGACCTATTT+GGG | + | chr1_3:5271424-5271443 | Msa0099190:intron | 30.0% |
| TGATAGTAGTTAGTTCATCA+TGG | + | chr1_3:5271469-5271488 | Msa0099190:intron | 30.0% | |
| TCATCTTAGTATGCTGTAAT+TGG | + | chr1_3:5271527-5271546 | Msa0099190:intron | 30.0% | |
| !!! | GGTTTATTTTGACAGATATC+TGG | + | chr1_3:5271548-5271567 | Msa0099190:intron | 30.0% |
| ! | AACTCTTTGAAGAGTTATTC+AGG | - | chr1_3:5271672-5271691 | None:intergenic | 30.0% |
| AAGTAACATCATAACGTTAC+CGG | - | chr1_3:5271938-5271957 | None:intergenic | 30.0% | |
| !! | ACGTTATGATGTTACTTTGT+TGG | + | chr1_3:5271941-5271960 | Msa0099190:intron | 30.0% |
| ACTTTGTTGGATAAAATGCT+TGG | + | chr1_3:5271954-5271973 | Msa0099190:intron | 30.0% | |
| GGGTCAACATATGATTATAA+CGG | - | chr1_3:5271986-5272005 | None:intergenic | 30.0% | |
| CATCTTCAACATAAGTTCTT+TGG | - | chr1_3:5272146-5272165 | None:intergenic | 30.0% | |
| CAAAGAACTTATGTTGAAGA+TGG | + | chr1_3:5272144-5272163 | Msa0099190:CDS | 30.0% | |
| ! | TGTTTTCATATAAGCTATCC+TGG | + | chr1_3:5272401-5272420 | Msa0099190:intron | 30.0% |
| !! | CTTATTTTCACAAATTCTCC+AGG | - | chr1_3:5272422-5272441 | None:intergenic | 30.0% |
| GAGTTTATTTGAAGAGCTTA+TGG | - | chr1_3:5272480-5272499 | None:intergenic | 30.0% | |
| !! | ATAGGAGTTTACTGTTTTTC+TGG | + | chr1_3:5272607-5272626 | Msa0099190:intron | 30.0% |
| GAAATGTATACAAGAATTGC+TGG | + | chr1_3:5272926-5272945 | Msa0099190:three_prime_UTR | 30.0% | |
| ACTGTAAGACAGTCAAAATT+TGG | + | chr1_3:5273053-5273072 | Msa0099190:three_prime_UTR | 30.0% | |
| ! | GTTGAAAGTGAAAAAGCATA+TGG | + | chr1_3:5273091-5273110 | Msa0099190:three_prime_UTR | 30.0% |
| !!! | TCGAGAAATTTTAAGTTGTG+GGG | + | chr1_3:5273144-5273163 | Msa0099190:three_prime_UTR | 30.0% |
| AATTGCTCTAATATCTACTG+AGG | + | chr1_3:5273221-5273240 | Msa0099190:three_prime_UTR | 30.0% | |
| ATAAGCTTGTAAACAACCTT+TGG | - | chr1_3:5273315-5273334 | None:intergenic | 30.0% | |
| GGAAAGTAATGTAACACCAA+TGG | - | chr1_3:5270009-5270028 | None:intergenic | 35.0% | |
| !! | AATCGATTTTGAATGGAGGA+AGG | + | chr1_3:5270106-5270125 | Msa0099190:exon | 35.0% |
| AAGGAAGCAGAAAGTTCAAA+AGG | + | chr1_3:5270125-5270144 | Msa0099190:CDS | 35.0% | |
| AGGAAGCAGAAAGTTCAAAA+GGG | + | chr1_3:5270126-5270145 | Msa0099190:CDS | 35.0% | |
| TTCATCTGCTAATTGAATGG+CGG | - | chr1_3:5270203-5270222 | None:intergenic | 35.0% | |
| GGTTAAGAGGAACATAGATT+TGG | + | chr1_3:5270626-5270645 | Msa0099190:intron | 35.0% | |
| ! | ATAGATTTGGTTTATGGTGG+TGG | + | chr1_3:5270639-5270658 | Msa0099190:CDS | 35.0% |
| TACAAAGGGTCTGTTTGAAT+AGG | - | chr1_3:5271014-5271033 | None:intergenic | 35.0% | |
| GTATGTTAGGGTAATGTCAA+TGG | + | chr1_3:5271365-5271384 | Msa0099190:intron | 35.0% | |
| ! | GAGCAAATTTTCTCCCAAAT+AGG | - | chr1_3:5271440-5271459 | None:intergenic | 35.0% |
| GAGTTATTCAGGTAATACCA+GGG | - | chr1_3:5271661-5271680 | None:intergenic | 35.0% | |
| AGAGTTATTCAGGTAATACC+AGG | - | chr1_3:5271662-5271681 | None:intergenic | 35.0% | |
| ! | AATGGAGGGTATGAGAAAAA+AGG | - | chr1_3:5271831-5271850 | None:intergenic | 35.0% |
| GATTATGAGGATAGAATGGA+GGG | - | chr1_3:5271845-5271864 | None:intergenic | 35.0% | |
| TGATTATGAGGATAGAATGG+AGG | - | chr1_3:5271846-5271865 | None:intergenic | 35.0% | |
| TCCATTCTATCCTCATAATC+AGG | + | chr1_3:5271845-5271864 | Msa0099190:intron | 35.0% | |
| TCCTGATTATGAGGATAGAA+TGG | - | chr1_3:5271849-5271868 | None:intergenic | 35.0% | |
| ATTCTATCCTCATAATCAGG+AGG | + | chr1_3:5271848-5271867 | Msa0099190:intron | 35.0% | |
| AGTAACCATCAACATTCAGT+AGG | - | chr1_3:5272033-5272052 | None:intergenic | 35.0% | |
| TTGCTTGCATTGTTTGACAA+TGG | + | chr1_3:5272061-5272080 | Msa0099190:CDS | 35.0% | |
| ! | TTTGACAATGGTGTTGAAGA+AGG | + | chr1_3:5272073-5272092 | Msa0099190:CDS | 35.0% |
| AGAACTTATGTTGAAGATGG+AGG | + | chr1_3:5272147-5272166 | Msa0099190:CDS | 35.0% | |
| GCAGAGTCTAAATTGATGAA+TGG | + | chr1_3:5272254-5272273 | Msa0099190:intron | 35.0% | |
| GAGTCTAAATTGATGAATGG+TGG | + | chr1_3:5272257-5272276 | Msa0099190:intron | 35.0% | |
| TGAAAGTAACTTGACAGACA+TGG | - | chr1_3:5272370-5272389 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCACAAC+AGG | + | chr1_3:5272498-5272517 | Msa0099190:intron | 35.0% | |
| TTTACCTCCTGCGATATATA+AGG | + | chr1_3:5272561-5272580 | Msa0099190:intron | 35.0% | |
| CAAAGTTCCTTATATATCGC+AGG | - | chr1_3:5272571-5272590 | None:intergenic | 35.0% | |
| AAGCAATTAGGCAATTATCC+AGG | + | chr1_3:5272824-5272843 | Msa0099190:CDS | 35.0% | |
| ! | ATGCAGAATGAAGCTTTGAT+TGG | + | chr1_3:5272855-5272874 | Msa0099190:exon | 35.0% |
| TATACAAGAATTGCTGGAGA+TGG | + | chr1_3:5272932-5272951 | Msa0099190:three_prime_UTR | 35.0% | |
| ATACAAGAATTGCTGGAGAT+GGG | + | chr1_3:5272933-5272952 | Msa0099190:three_prime_UTR | 35.0% | |
| !!! | TGCTTTTTCACTTTCAACTG+TGG | - | chr1_3:5273089-5273108 | None:intergenic | 35.0% |
| TACAAGCTTATGACAATGAG+TGG | + | chr1_3:5273324-5273343 | Msa0099190:three_prime_UTR | 35.0% | |
| ! | AAAAGGGTATGTGTCTTCTG+CGG | + | chr1_3:5270142-5270161 | Msa0099190:CDS | 40.0% |
| !! | GGTTTGTGTTTCAGGTTAAG+AGG | + | chr1_3:5270613-5270632 | Msa0099190:intron | 40.0% |
| AATGGTGGTTGTCATGTTCT+AGG | + | chr1_3:5270702-5270721 | Msa0099190:CDS | 40.0% | |
| ATGGTGGTTGTCATGTTCTA+GGG | + | chr1_3:5270703-5270722 | Msa0099190:CDS | 40.0% | |
| AGTAGCACAAATACCTCATG+CGG | - | chr1_3:5271117-5271136 | None:intergenic | 40.0% | |
| AGCGAGGGTTTATGTATGTT+AGG | + | chr1_3:5271352-5271371 | Msa0099190:intron | 40.0% | |
| GCGAGGGTTTATGTATGTTA+GGG | + | chr1_3:5271353-5271372 | Msa0099190:intron | 40.0% | |
| TTAGGGTAATGTCAATGGAG+CGG | + | chr1_3:5271370-5271389 | Msa0099190:intron | 40.0% | |
| TCCTCATAATCAGGAGGATA+TGG | + | chr1_3:5271854-5271873 | Msa0099190:intron | 40.0% | |
| TCCATATCCTCCTGATTATG+AGG | - | chr1_3:5271858-5271877 | None:intergenic | 40.0% | |
| ATCAGGAGGATATGGAACTA+TGG | + | chr1_3:5271862-5271881 | Msa0099190:intron | 40.0% | |
| ! | AGCTTCTGGAGATGATAACT+TGG | + | chr1_3:5271888-5271907 | Msa0099190:CDS | 40.0% |
| ! | GCTTCTGGAGATGATAACTT+GGG | + | chr1_3:5271889-5271908 | Msa0099190:CDS | 40.0% |
| ATGATAACTTGGGCTCAACT+TGG | + | chr1_3:5271899-5271918 | Msa0099190:CDS | 40.0% | |
| ! | CCTGTGCAGGATGATATTTT+GGG | - | chr1_3:5272006-5272025 | None:intergenic | 40.0% |
| ! | ACCTGTGCAGGATGATATTT+TGG | - | chr1_3:5272007-5272026 | None:intergenic | 40.0% |
| AAATATCATCCTGCACAGGT+TGG | + | chr1_3:5272007-5272026 | Msa0099190:intron | 40.0% | |
| TGAGAGTCAATAACCCTGTT+TGG | + | chr1_3:5272312-5272331 | Msa0099190:intron | 40.0% | |
| AGTTCCTTATATATCGCAGG+AGG | - | chr1_3:5272568-5272587 | None:intergenic | 40.0% | |
| ! | CATTCTGCATTTTCTTGTCC+TGG | - | chr1_3:5272845-5272864 | None:intergenic | 40.0% |
| ! | CAGAATGAAGCTTTGATTGG+TGG | + | chr1_3:5272858-5272877 | Msa0099190:exon | 40.0% |
| ! | ATGAAGCTTTGATTGGTGGA+AGG | + | chr1_3:5272862-5272881 | Msa0099190:exon | 40.0% |
| TACAAGAATTGCTGGAGATG+GGG | + | chr1_3:5272934-5272953 | Msa0099190:three_prime_UTR | 40.0% | |
| TGCTCTAATATCTACTGAGG+TGG | + | chr1_3:5273224-5273243 | Msa0099190:three_prime_UTR | 40.0% | |
| CAAATCTGGTCACAACATAG+TGG | - | chr1_3:5273252-5273271 | None:intergenic | 40.0% | |
| !! | GTTTATGGTGGTGGAAGTGT+TGG | + | chr1_3:5270648-5270667 | Msa0099190:CDS | 45.0% |
| !! | TGGTGGAAGTGTTGGATTGA+TGG | + | chr1_3:5270656-5270675 | Msa0099190:CDS | 45.0% |
| !! | GGTGGAAGTGTTGGATTGAT+GGG | + | chr1_3:5270657-5270676 | Msa0099190:CDS | 45.0% |
| GATATCACTTTGGCCCTGTT+CGG | + | chr1_3:5270768-5270787 | Msa0099190:intron | 45.0% | |
| TAGGGTAATGTCAATGGAGC+GGG | + | chr1_3:5271371-5271390 | Msa0099190:intron | 45.0% | |
| CAGATATCTGGTGAAGCAGT+AGG | + | chr1_3:5271560-5271579 | Msa0099190:intron | 45.0% | |
| GTGAAGCAGTAGGTGAAGTA+AGG | + | chr1_3:5271570-5271589 | Msa0099190:CDS | 45.0% | |
| GCATGAGAGAAAAGCTGCAA+TGG | + | chr1_3:5271607-5271626 | Msa0099190:CDS | 45.0% | |
| TGGAACTATGGAAGAGCTTC+TGG | + | chr1_3:5271874-5271893 | Msa0099190:CDS | 45.0% | |
| CCCAAAATATCATCCTGCAC+AGG | + | chr1_3:5272003-5272022 | Msa0099190:intron | 45.0% | |
| ! | GTTGGCCTACTGAATGTTGA+TGG | + | chr1_3:5272025-5272044 | Msa0099190:CDS | 45.0% |
| ACAACTATACTCCGAGCACT+GGG | - | chr1_3:5272109-5272128 | None:intergenic | 45.0% | |
| GATATAGGGCCTGTTGTGAT+TGG | - | chr1_3:5272510-5272529 | None:intergenic | 45.0% | |
| AGCTGGCAGATGAAGCAATT+AGG | + | chr1_3:5272812-5272831 | Msa0099190:CDS | 45.0% | |
| ATCATGGCCAACCTAGAGTT+TGG | + | chr1_3:5273285-5273304 | Msa0099190:three_prime_UTR | 45.0% | |
| ! | TGGTTTGCCAAACTCTAGGT+TGG | - | chr1_3:5273295-5273314 | None:intergenic | 45.0% |
| !! | CCTTTGGTTTGCCAAACTCT+AGG | - | chr1_3:5273299-5273318 | None:intergenic | 45.0% |
| CCTAGAGTTTGGCAAACCAA+AGG | + | chr1_3:5273296-5273315 | Msa0099190:three_prime_UTR | 45.0% | |
| ACTGAAAACATGGCGGTTGC+CGG | - | chr1_3:5270176-5270195 | None:intergenic | 50.0% | |
| ! | TCATGCGGCATGAGAGCTTT+TGG | - | chr1_3:5271102-5271121 | None:intergenic | 50.0% |
| AAAAGCTCTCATGCCGCATG+AGG | + | chr1_3:5271101-5271120 | Msa0099190:CDS | 50.0% | |
| AGGGTAATGTCAATGGAGCG+GGG | + | chr1_3:5271372-5271391 | Msa0099190:intron | 50.0% | |
| TGCAATGGCTCAAGAAGCTG+AGG | + | chr1_3:5271622-5271641 | Msa0099190:CDS | 50.0% | |
| ! | GAGGCATTTATTGCACTCCC+TGG | + | chr1_3:5271641-5271660 | Msa0099190:CDS | 50.0% |
| GCTTCATTAAGCCCAGTGCT+CGG | + | chr1_3:5272095-5272114 | Msa0099190:CDS | 50.0% | |
| GACAACTATACTCCGAGCAC+TGG | - | chr1_3:5272110-5272129 | None:intergenic | 50.0% | |
| ATGAGGGGCTACATGCTCAT+GGG | - | chr1_3:5272789-5272808 | None:intergenic | 50.0% | |
| TCATCTGCCAGCTCTCATGA+GGG | - | chr1_3:5272805-5272824 | None:intergenic | 50.0% | |
| TTCATCTGCCAGCTCTCATG+AGG | - | chr1_3:5272806-5272825 | None:intergenic | 50.0% | |
| CGGCGTCACTGAAAACATGG+CGG | - | chr1_3:5270183-5270202 | None:intergenic | 55.0% | |
| TGGCGGCGTCACTGAAAACA+TGG | - | chr1_3:5270186-5270205 | None:intergenic | 55.0% | |
| TTCAGTAGGCCAACCTGTGC+AGG | - | chr1_3:5272019-5272038 | None:intergenic | 55.0% | |
| CATGAGGGGCTACATGCTCA+TGG | - | chr1_3:5272790-5272809 | None:intergenic | 55.0% | |
| ATGTAGCCCCTCATGAGAGC+TGG | + | chr1_3:5272795-5272814 | Msa0099190:CDS | 55.0% | |
| CATCTGCCAGCTCTCATGAG+GGG | - | chr1_3:5272804-5272823 | None:intergenic | 55.0% | |
| GTCTTCTGCGGCAGCAACTC+CGG | + | chr1_3:5270154-5270173 | Msa0099190:CDS | 60.0% | |
| GGGGCTACATGCTCATGGGA+AGG | - | chr1_3:5272785-5272804 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 5269979 | 5273353 | 5269979 | ID=Msa0099190;Name=Msa0099190 |
| chr1_3 | mRNA | 5269979 | 5273353 | 5269979 | ID=Msa0099190-mRNA-1;Parent=Msa0099190;Name=Msa0099190-mRNA-1;_AED=0.09;_eAED=0.09;_QI=139|1|1|1|1|1|7|488|214 |
| chr1_3 | exon | 5269979 | 5270225 | 5269979 | ID=Msa0099190-mRNA-1:exon:1867;Parent=Msa0099190-mRNA-1 |
| chr1_3 | exon | 5270627 | 5270724 | 5270627 | ID=Msa0099190-mRNA-1:exon:1868;Parent=Msa0099190-mRNA-1 |
| chr1_3 | exon | 5271092 | 5271122 | 5271092 | ID=Msa0099190-mRNA-1:exon:1869;Parent=Msa0099190-mRNA-1 |
| chr1_3 | exon | 5271563 | 5271662 | 5271563 | ID=Msa0099190-mRNA-1:exon:1870;Parent=Msa0099190-mRNA-1 |
| chr1_3 | exon | 5271867 | 5271937 | 5271867 | ID=Msa0099190-mRNA-1:exon:1871;Parent=Msa0099190-mRNA-1 |
| chr1_3 | exon | 5272025 | 5272168 | 5272025 | ID=Msa0099190-mRNA-1:exon:1872;Parent=Msa0099190-mRNA-1 |
| chr1_3 | exon | 5272773 | 5273353 | 5272773 | ID=Msa0099190-mRNA-1:exon:1873;Parent=Msa0099190-mRNA-1 |
| chr1_3 | five_prime_UTR | 5269979 | 5270117 | 5269979 | ID=Msa0099190-mRNA-1:five_prime_utr;Parent=Msa0099190-mRNA-1 |
| chr1_3 | CDS | 5270118 | 5270225 | 5270118 | ID=Msa0099190-mRNA-1:cds;Parent=Msa0099190-mRNA-1 |
| chr1_3 | CDS | 5270627 | 5270724 | 5270627 | ID=Msa0099190-mRNA-1:cds;Parent=Msa0099190-mRNA-1 |
| chr1_3 | CDS | 5271092 | 5271122 | 5271092 | ID=Msa0099190-mRNA-1:cds;Parent=Msa0099190-mRNA-1 |
| chr1_3 | CDS | 5271563 | 5271662 | 5271563 | ID=Msa0099190-mRNA-1:cds;Parent=Msa0099190-mRNA-1 |
| chr1_3 | CDS | 5271867 | 5271937 | 5271867 | ID=Msa0099190-mRNA-1:cds;Parent=Msa0099190-mRNA-1 |
| chr1_3 | CDS | 5272025 | 5272168 | 5272025 | ID=Msa0099190-mRNA-1:cds;Parent=Msa0099190-mRNA-1 |
| chr1_3 | CDS | 5272773 | 5272865 | 5272773 | ID=Msa0099190-mRNA-1:cds;Parent=Msa0099190-mRNA-1 |
| chr1_3 | three_prime_UTR | 5272866 | 5273353 | 5272866 | ID=Msa0099190-mRNA-1:three_prime_utr;Parent=Msa0099190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
