AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371290 MtrunA17_Chr3g0117751 96.825 630 11 1 57 677 1 630 0.0 1254
Msa0371290 MtrunA17_Chr4g0049841 38.365 636 311 17 109 677 87 708 3.32e-126 390
Msa0371290 MtrunA17_Chr4g0059151 52.128 94 42 2 284 377 1 91 5.63e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371290 AT1G27510.1 57.041 561 222 7 133 677 94 651 0.0 607
Msa0371290 AT4G33630.1 37.691 589 303 16 130 675 115 682 2.30e-107 340
Msa0371290 AT4G33630.2 37.691 589 303 16 130 675 115 682 2.30e-107 340
Msa0371290 AT4G33630.3 37.691 589 303 16 130 675 115 682 2.30e-107 340

Find 222 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGGTGGGTGGTTTATT+AGG 0.161975 3_1:-69435515 None:intergenic
CTGATGTTGCTAAGGCCTTT+TGG 0.172201 3_1:+69438801 Msa0371290:CDS
CCCCATCTTTACTTGCTAAA+AGG 0.204998 3_1:+69438219 Msa0371290:CDS
AAGAAGCAGCAAAGCTAAAA+AGG 0.212205 3_1:+69436453 Msa0371290:CDS
GTCCAATTGAGACGAAAATT+TGG 0.216706 3_1:+69439994 Msa0371290:CDS
GGGGAATTGCTTCAACTTAA+TGG 0.218721 3_1:+69441116 Msa0371290:CDS
AATTCCCCATCAACCCATTT+TGG 0.219963 3_1:-69441101 None:intergenic
ACCACATAAATTTCAAATAA+TGG 0.229915 3_1:-69437769 None:intergenic
CGATGTTTCATTGGTGGAAT+TGG 0.248055 3_1:-69435609 None:intergenic
ACTATAAATATTTATATATA+GGG 0.253774 3_1:-69442156 None:intergenic
TGAAGAAGATTGAGACAAAA+AGG 0.255282 3_1:-69435344 None:intergenic
GGGATCCTTTATGTGCATTA+TGG 0.255430 3_1:+69441636 Msa0371290:three_prime_UTR
TTAGATATGAAGCTCTTTAT+TGG 0.256773 3_1:+69438578 Msa0371290:CDS
CTCTCCTCAACCTTGTCTTC+AGG 0.264597 3_1:-69438290 None:intergenic
GACAATTTCACGCATGCTTT+TGG 0.267932 3_1:-69439741 None:intergenic
ATGAAACATCGTCTCTTAAC+TGG 0.278764 3_1:+69435621 Msa0371290:CDS
GATTGTCCCCGATGTCAATT+TGG 0.283219 3_1:+69442051 Msa0371290:three_prime_UTR
CAATTTGGGTTTGGCTAGTT+TGG 0.285639 3_1:+69442066 Msa0371290:three_prime_UTR
GGACTCTATGTTGGTGCATT+TGG 0.288125 3_1:+69439952 Msa0371290:intron
AATGAAGCCATCACCATGTT+TGG 0.289815 3_1:-69435428 None:intergenic
CTTTATGTGCATTATGGTTA+TGG 0.295677 3_1:+69441642 Msa0371290:three_prime_UTR
TACTATAAATATTTATATAT+AGG 0.296355 3_1:-69442157 None:intergenic
GTGACATTCCGTGCTAAAAT+TGG 0.301622 3_1:+69440239 Msa0371290:CDS
GTTGGTGCATTTGGACCTTA+TGG 0.309966 3_1:+69439961 Msa0371290:CDS
GTTGTTGTGCTGTTGTGTTT+TGG 0.321795 3_1:-69435314 None:intergenic
GAACCTTCTTAAAACTCTTC+TGG 0.328947 3_1:+69441803 Msa0371290:three_prime_UTR
AATATTTATAGTAATACTTT+TGG 0.332764 3_1:+69442167 Msa0371290:three_prime_UTR
TGTTGTTTCTAACAACGTTT+TGG 0.335469 3_1:-69435403 None:intergenic
AAAAGGTGGGTGGTTTATTA+GGG 0.341547 3_1:-69435514 None:intergenic
AAACAGAATGCAAGTTATAA+AGG 0.347493 3_1:+69441044 Msa0371290:intron
CCCCGATGTCAATTTGGGTT+TGG 0.352260 3_1:+69442057 Msa0371290:three_prime_UTR
CTGTGTGCCTTCTTGTTTGT+GGG 0.355176 3_1:+69441665 Msa0371290:three_prime_UTR
CGAAATCCAAAATGGGTTGA+TGG 0.365952 3_1:+69441095 Msa0371290:CDS
GTTACTCGTTGAATTTCCTT+TGG 0.371590 3_1:-69438192 None:intergenic
TGGACTGTATCCTGATGAAT+TGG 0.374202 3_1:+69440286 Msa0371290:CDS
CAATGAAGATAATTCTTCTA+AGG 0.375818 3_1:+69438616 Msa0371290:CDS
TTCTTCTGTGTTTAGGGCAT+GGG 0.376637 3_1:+69441253 Msa0371290:intron
TGCAGGTGGGTTGGTGGGTA+GGG 0.377171 3_1:+69437558 Msa0371290:intron
ATGCAGGTGGGTTGGTGGGT+AGG 0.378183 3_1:+69437557 Msa0371290:intron
ATTATTTAGTCTTAAAAGAA+AGG 0.384034 3_1:+69441928 Msa0371290:three_prime_UTR
CAGTTGCTCACGGCATCTAC+TGG 0.384126 3_1:+69437742 Msa0371290:CDS
TGAAATTATGTCTCAGTTGA+AGG 0.389115 3_1:+69436511 Msa0371290:CDS
ATTGTCCCCGATGTCAATTT+GGG 0.397971 3_1:+69442052 Msa0371290:three_prime_UTR
CTTGAAAAGACTGAGATTGA+AGG 0.401489 3_1:-69435551 None:intergenic
AAACATGGTGATGGCTTCAT+TGG 0.403507 3_1:+69435430 Msa0371290:CDS
GCAACAAAACGAAATTATAA+AGG 0.405712 3_1:-69441525 None:intergenic
CACATGAAAGGAGCAGATCT+TGG 0.407586 3_1:+69441280 Msa0371290:CDS
CATCGTCTCTTAACTGGGAT+TGG 0.411910 3_1:+69435627 Msa0371290:CDS
TTGAGTTGGCCTGGTGGTGT+TGG 0.413303 3_1:+69441987 Msa0371290:three_prime_UTR
GTTAAGAGACGATGTTTCAT+TGG 0.413805 3_1:-69435618 None:intergenic
ATACGTATTATTCTACCAAA+AGG 0.416476 3_1:-69437602 None:intergenic
ACATATGATAACATAGAGAT+TGG 0.417262 3_1:-69441556 None:intergenic
ATGAAGCCATCACCATGTTT+GGG 0.419699 3_1:-69435427 None:intergenic
TTCTGATAAAGTCTCTTCTA+AGG 0.422012 3_1:+69438826 Msa0371290:CDS
CTTCCCTGACGTTGGTGGGT+TGG 0.425330 3_1:+69441395 Msa0371290:three_prime_UTR
CTTTCTTCCCTGACGTTGGT+GGG 0.425639 3_1:+69441391 Msa0371290:three_prime_UTR
CCATTTCGATGATATTGAAC+AGG 0.427605 3_1:+69435664 Msa0371290:CDS
TTTGATGCAGGCAGAATACC+TGG 0.427706 3_1:-69441693 None:intergenic
CATAACCATAATGCACATAA+AGG 0.433042 3_1:-69441641 None:intergenic
TTTGCTCGGGCACAGCATAA+AGG 0.436923 3_1:-69441306 None:intergenic
ATGGTAGCGCTCATCGTCTA+TGG 0.438503 3_1:-69436625 None:intergenic
TGATGGGGAAGATGATAATC+TGG 0.438817 3_1:+69438496 Msa0371290:CDS
TGATGTGTAGAGAGATAAAA+AGG 0.440513 3_1:+69442190 Msa0371290:three_prime_UTR
GGAGAAGATAAAGATTAAGA+TGG 0.441098 3_1:-69435382 None:intergenic
AGGAGCTATAGAAAGACCTT+AGG 0.444366 3_1:+69441615 Msa0371290:three_prime_UTR
AATTTCAGCAACACTATCCT+TGG 0.446349 3_1:-69436495 None:intergenic
GATTCTAGAGTGACCTCATC+AGG 0.448858 3_1:-69438524 None:intergenic
GAAGACAAATTCTCAACCTC+TGG 0.449834 3_1:-69438251 None:intergenic
AATACGTATTAGTCCTGGTA+TGG 0.450044 3_1:+69437616 Msa0371290:CDS
CCCCTCTGGGACTTGCAATC+CGG 0.451843 3_1:-69439823 None:intergenic
TTTACCACTCCCAATTCATC+AGG 0.451893 3_1:-69440296 None:intergenic
CCGGTTAAAATATGTATCTT+CGG 0.453570 3_1:-69439804 None:intergenic
TACTCCAACCCACCAACGTC+AGG 0.455413 3_1:-69441399 None:intergenic
TCTTTCTTCCCTGACGTTGG+TGG 0.456581 3_1:+69441390 Msa0371290:three_prime_UTR
TCTTAATGTTCCTGCAGGCC+AGG 0.458683 3_1:+69440101 Msa0371290:CDS
CCTGTTCAATATCATCGAAA+TGG 0.458726 3_1:-69435664 None:intergenic
TGTTGAAGAGGAAGCAAGAG+AGG 0.459335 3_1:+69438427 Msa0371290:CDS
GCCAAACCCAAATTGACATC+GGG 0.460570 3_1:-69442058 None:intergenic
CAGGGAAGAAAGAAATTTGA+AGG 0.462451 3_1:-69441380 None:intergenic
TGGACTATTTCGATGCCATA+AGG 0.462771 3_1:-69439976 None:intergenic
GCTGTGTGCCTTCTTGTTTG+TGG 0.463974 3_1:+69441664 Msa0371290:three_prime_UTR
AAAGAATGTGGTTAAAGTAT+TGG 0.466373 3_1:+69442106 Msa0371290:three_prime_UTR
GCAAATGTTAGTCTGTTAGT+AGG 0.473639 3_1:+69441752 Msa0371290:three_prime_UTR
GTGGTGTTGGCTTAAGACCT+TGG 0.473768 3_1:+69442000 Msa0371290:three_prime_UTR
CAAGGGAGAATAGCAGACTT+TGG 0.474937 3_1:+69441068 Msa0371290:CDS
CGATTCTATTAAACAAATCA+TGG 0.476080 3_1:+69438454 Msa0371290:CDS
ACCATTATTTGAAATTTATG+TGG 0.477192 3_1:+69437768 Msa0371290:CDS
TTCTCCTAGGTATATGTAAG+AGG 0.477355 3_1:-69438691 None:intergenic
TGTTGTTAAATCACTTGAGT+TGG 0.479925 3_1:+69441973 Msa0371290:three_prime_UTR
CAATATCAAAGTGGCAGCAC+TGG 0.480476 3_1:+69438748 Msa0371290:CDS
TCTTGTTTGTGGGAAGTCCC+AGG 0.481587 3_1:+69441675 Msa0371290:three_prime_UTR
CTAGCGGCTTCCTTTGATGC+AGG 0.482036 3_1:-69441705 None:intergenic
TTCTCAACCTCTGGTTTCGA+TGG 0.484470 3_1:-69438242 None:intergenic
GACTTTATCAGAACCCCAAA+AGG 0.484724 3_1:-69438816 None:intergenic
GAAATCCAAAATGGGTTGAT+GGG 0.485558 3_1:+69441096 Msa0371290:CDS
CTTACTCAGGTAGTTTCAAT+CGG 0.485754 3_1:-69441348 None:intergenic
TACTGACAAAATAGTGTGCC+AGG 0.485915 3_1:+69441595 Msa0371290:three_prime_UTR
TCCATGTTCTTTATTTCCGC+TGG 0.487068 3_1:-69438656 None:intergenic
AGGTATTCTGCCTGCATCAA+AGG 0.487215 3_1:+69441695 Msa0371290:three_prime_UTR
GAAAGGATCAAAATCCCCTC+TGG 0.488511 3_1:-69439837 None:intergenic
ATTGAAACGTGAAGGGGTTG+TGG 0.488962 3_1:-69435486 None:intergenic
TTATGCAGATACACTGGAAG+TGG 0.490425 3_1:+69436660 Msa0371290:CDS
TGAGACGAAAATTTGGACAT+TGG 0.493193 3_1:+69440001 Msa0371290:CDS
TAATGCCTCGGATGAAGAAA+AGG 0.497058 3_1:+69438553 Msa0371290:CDS
TTAAATCACTTGAGTTGGCC+TGG 0.499949 3_1:+69441978 Msa0371290:three_prime_UTR
GCATAAACCACCTGGCCTGC+AGG 0.501097 3_1:-69440111 None:intergenic
TTGAAAAGACTGAGATTGAA+GGG 0.502014 3_1:-69435550 None:intergenic
TATGCCTTCTGATGTTGCTA+AGG 0.502960 3_1:+69438793 Msa0371290:CDS
TATGAACATTAATGTTGAAG+AGG 0.506769 3_1:+69438415 Msa0371290:CDS
TACGTATTATTCTACCAAAA+GGG 0.507649 3_1:-69437601 None:intergenic
AGATAAAGATTAAGATGGAA+TGG 0.508902 3_1:-69435377 None:intergenic
TAAGGTCTTTCTATAGCTCC+TGG 0.509013 3_1:-69441613 None:intergenic
GGAAATAAAGAACATGGAAA+GGG 0.510999 3_1:+69438661 Msa0371290:CDS
CAAAGTCTGCTATTCTCCCT+TGG 0.511863 3_1:-69441067 None:intergenic
CCAACGAACCTGCCCATACC+AGG 0.513196 3_1:-69437629 None:intergenic
GAAGATGGTAATAAAACTGA+TGG 0.516351 3_1:+69438479 Msa0371290:CDS
TAGCTCGGTTGGTGCATTGA+GGG 0.518283 3_1:-69441829 None:intergenic
GTTGGTGGGTTGGAGTATGA+AGG 0.520129 3_1:+69441405 Msa0371290:three_prime_UTR
CGGAAATAAAGAACATGGAA+AGG 0.521393 3_1:+69438660 Msa0371290:CDS
AACATGGTGATGGCTTCATT+GGG 0.523847 3_1:+69435431 Msa0371290:CDS
GGGGATCTTAATGTTCCTGC+AGG 0.523907 3_1:+69440096 Msa0371290:CDS
GATATGAAGCTCTTTATTGG+CGG 0.526968 3_1:+69438581 Msa0371290:CDS
GTAGAGGCAGTAAAATTGAC+TGG 0.527358 3_1:+69440075 Msa0371290:CDS
CATATGATAACATAGAGATT+GGG 0.528542 3_1:-69441555 None:intergenic
CCTGGTATGGGCAGGTTCGT+TGG 0.529200 3_1:+69437629 Msa0371290:CDS
ACTATCGCTCAATCAAGAAA+AGG 0.530223 3_1:-69441457 None:intergenic
AAGAGACGATGTTTCATTGG+TGG 0.531737 3_1:-69435615 None:intergenic
TGAAGGGGTTGTGGTTGTGT+TGG 0.532066 3_1:-69435477 None:intergenic
GTTGAAGAGGAAGCAAGAGA+GGG 0.534106 3_1:+69438428 Msa0371290:CDS
TAGCACAAGAAAACTTTGCT+CGG 0.535045 3_1:-69441320 None:intergenic
TGAGAATTTGTCTTCAGTTG+AGG 0.535965 3_1:+69438259 Msa0371290:CDS
TGGAGGTGCATCGTAGAAAG+TGG 0.536801 3_1:-69435589 None:intergenic
GGAGCTATAGAAAGACCTTA+GGG 0.537298 3_1:+69441616 Msa0371290:three_prime_UTR
GGAGAAATCTCGATAATGAC+AGG 0.537424 3_1:+69438708 Msa0371290:CDS
GGTTGTGTTGGAGAAGAAGA+TGG 0.541907 3_1:-69435465 None:intergenic
AAACAAATCATGGAGGAAGA+TGG 0.541939 3_1:+69438464 Msa0371290:CDS
TGTTTCATTGGTGGAATTGG+AGG 0.543784 3_1:-69435606 None:intergenic
AAGATGGTAATAAAACTGAT+GGG 0.547404 3_1:+69438480 Msa0371290:CDS
ATTTCTTTCTTCCCTGACGT+TGG 0.549004 3_1:+69441387 Msa0371290:three_prime_UTR
CAATGTTGAGGCGGCAACTG+AGG 0.550842 3_1:+69438331 Msa0371290:CDS
TCAAAATTATGCAGATACAC+TGG 0.555623 3_1:+69436654 Msa0371290:CDS
GGGTGAAGATTGAAACGTGA+AGG 0.559091 3_1:-69435494 None:intergenic
AGCACAAGAAAACTTTGCTC+GGG 0.559857 3_1:-69441319 None:intergenic
AATAAAACTTTAATTACTAG+CGG 0.560665 3_1:-69441721 None:intergenic
GGAGGTGCATCGTAGAAAGT+GGG 0.560948 3_1:-69435588 None:intergenic
TGTTGGAGAAGAAGATGGCT+TGG 0.561844 3_1:-69435460 None:intergenic
TTAACTGGGATTGGAATCGT+TGG 0.561945 3_1:+69435636 Msa0371290:CDS
AGAATAATACGTATTAGTCC+TGG 0.563260 3_1:+69437611 Msa0371290:CDS
TTTATTTATCGCCGTGCGCG+TGG 0.563616 3_1:+69435274 Msa0371290:CDS
GGTGAAGATTGAAACGTGAA+GGG 0.564363 3_1:-69435493 None:intergenic
ATTGCTTCAACTTAATGGCA+AGG 0.564516 3_1:+69441121 Msa0371290:CDS
TTGGCAAGAGTTACAGTCCA+AGG 0.564564 3_1:+69437648 Msa0371290:CDS
GTTGAGGCGGCAACTGAGGA+TGG 0.566825 3_1:+69438335 Msa0371290:CDS
AGTTGCTCACGGCATCTACT+GGG 0.567853 3_1:+69437743 Msa0371290:CDS
AATGCAAGTTATAAAGGCCA+AGG 0.568569 3_1:+69441050 Msa0371290:CDS
GTGTATTTGCGACGAGCCAA+AGG 0.568572 3_1:+69438176 Msa0371290:CDS
GGTCTTAAGCCAACACCACC+AGG 0.569425 3_1:-69441996 None:intergenic
AAAGGATCAAAATCCCCTCT+GGG 0.570948 3_1:-69439836 None:intergenic
TGAAACATCGTCTCTTAACT+GGG 0.570992 3_1:+69435622 Msa0371290:CDS
AGATCTGCTCCTTTCATGTG+TGG 0.571340 3_1:-69441277 None:intergenic
GGACTGTATCCTGATGAATT+GGG 0.571701 3_1:+69440287 Msa0371290:CDS
CTTTCCTCTTACATATACCT+AGG 0.573230 3_1:+69438687 Msa0371290:CDS
GTATTAGTCCTGGTATGGGC+AGG 0.574333 3_1:+69437621 Msa0371290:CDS
TCATTATCGAGATTTCTCCT+AGG 0.575590 3_1:-69438704 None:intergenic
ACCGGATTGCAAGTCCCAGA+GGG 0.577368 3_1:+69439822 Msa0371290:CDS
GTTGGAGAAGAAGATGGCTT+GGG 0.577908 3_1:-69435459 None:intergenic
AAGCTTTGCATCTCTTCTCA+AGG 0.579029 3_1:+69435691 Msa0371290:CDS
CTAGTCTCGCGTAGATAGCT+CGG 0.579515 3_1:-69441844 None:intergenic
ATATATAGGGATCGATGTTG+AGG 0.586196 3_1:-69442143 None:intergenic
AGAATCTGACGGTAATGCCT+CGG 0.586434 3_1:+69438541 Msa0371290:CDS
AGGGAAGAAAGAAATTTGAA+GGG 0.586434 3_1:-69441379 None:intergenic
TAGAGGCAGTAAAATTGACT+GGG 0.586779 3_1:+69440076 Msa0371290:CDS
ATTTGGACATTGGAATGATG+TGG 0.588530 3_1:+69440011 Msa0371290:CDS
CAACAACCCAAACATGGTGA+TGG 0.590543 3_1:+69435421 Msa0371290:CDS
ATAGCTCGGTTGGTGCATTG+AGG 0.591650 3_1:-69441830 None:intergenic
TCCAGCGGAAATAAAGAACA+TGG 0.592636 3_1:+69438655 Msa0371290:CDS
CAGATACACTGGAAGTGGAC+TGG 0.592729 3_1:+69436665 Msa0371290:CDS
ATACGTATTAGTCCTGGTAT+GGG 0.594549 3_1:+69437617 Msa0371290:CDS
AGCCAAACCCAAATTGACAT+CGG 0.601837 3_1:-69442059 None:intergenic
TGACGACACATATCATATGC+AGG 0.602020 3_1:+69437801 Msa0371290:CDS
AGAACCTGAAGACAAGGTTG+AGG 0.605973 3_1:+69438286 Msa0371290:CDS
AATAAAGAGTTGCATATCTG+TGG 0.606659 3_1:+69441884 Msa0371290:three_prime_UTR
GTCAACCGCAACGCCAACCG+TGG 0.607012 3_1:+69440266 Msa0371290:CDS
GGGACTTCCCACAAACAAGA+AGG 0.607023 3_1:-69441672 None:intergenic
ATAACTTTGACTTTCAACCC+TGG 0.608548 3_1:-69438395 None:intergenic
GGCATGGGACCACACATGAA+AGG 0.609118 3_1:+69441268 Msa0371290:CDS
TAAAGTTCGCAATATCAAAG+TGG 0.611705 3_1:+69438739 Msa0371290:CDS
AAGGCCTTAGCAACATCAGA+AGG 0.612039 3_1:-69438797 None:intergenic
AAATCCAAAATGGGTTGATG+GGG 0.623944 3_1:+69441097 Msa0371290:CDS
GAGGTCACTCTAGAATCTGA+CGG 0.624444 3_1:+69438530 Msa0371290:CDS
ATCAGGATACAGTCCACGGT+TGG 0.625330 3_1:-69440279 None:intergenic
TATAGTTGAAGCGACATCCA+AGG 0.625332 3_1:+69436478 Msa0371290:CDS
CTTGAGATGAGCAAACTCCA+AGG 0.625884 3_1:-69442017 None:intergenic
ACAGTCCACGGTTGGCGTTG+CGG 0.626828 3_1:-69440271 None:intergenic
TAAGCCAACTCACCGTCGAA+AGG 0.627500 3_1:-69439854 None:intergenic
TAGAAACAACAACCCAAACA+TGG 0.627835 3_1:+69435415 Msa0371290:CDS
GTGGCAGCACTGGCAGCACA+AGG 0.629400 3_1:+69438758 Msa0371290:CDS
ATGCACATAAAGGATCCCTA+AGG 0.630826 3_1:-69441631 None:intergenic
TCTCGCGTAGATAGCTCGGT+TGG 0.630897 3_1:-69441840 None:intergenic
TAAAATGCAGGACTCTATGT+TGG 0.634434 3_1:+69439943 Msa0371290:intron
GTATCCTGATGAATTGGGAG+TGG 0.636503 3_1:+69440292 Msa0371290:CDS
GAGGTGCATCGTAGAAAGTG+GGG 0.649102 3_1:-69435587 None:intergenic
ATGCAAGTTATAAAGGCCAA+GGG 0.650434 3_1:+69441051 Msa0371290:CDS
ACTCCAACCCACCAACGTCA+GGG 0.651545 3_1:-69441398 None:intergenic
ATACTACAGACAGTTGCTCA+CGG 0.652024 3_1:+69437732 Msa0371290:intron
TGAATTTATACGTCTTCCAG+CGG 0.652090 3_1:+69438640 Msa0371290:CDS
AGATGGTAATAAAACTGATG+GGG 0.654724 3_1:+69438481 Msa0371290:CDS
ATTCATCAGGATACAGTCCA+CGG 0.657204 3_1:-69440283 None:intergenic
GGTGCAAGAACCTGAAGACA+AGG 0.663351 3_1:+69438280 Msa0371290:CDS
TTGATGCAGGCAGAATACCT+GGG 0.663906 3_1:-69441692 None:intergenic
AACCGGATTGCAAGTCCCAG+AGG 0.666112 3_1:+69439821 Msa0371290:CDS
TAATCTGGATGAACCTGATG+AGG 0.667712 3_1:+69438511 Msa0371290:CDS
AATCACTTGAGTTGGCCTGG+TGG 0.675244 3_1:+69441981 Msa0371290:three_prime_UTR
GAAATTATAAAGGAATCGTG+AGG 0.680269 3_1:-69441515 None:intergenic
AGGTGCATCGTAGAAAGTGG+GGG 0.682293 3_1:-69435586 None:intergenic
CCGGATTGCAAGTCCCAGAG+GGG 0.701896 3_1:+69439823 Msa0371290:CDS
GTGAAGATTGAAACGTGAAG+GGG 0.702867 3_1:-69435492 None:intergenic
TTCTATTAAACAAATCATGG+AGG 0.705436 3_1:+69438457 Msa0371290:CDS
GGTGCATCGTAGAAAGTGGG+GGG 0.711235 3_1:-69435585 None:intergenic
TAAAAGGCCATCGAAACCAG+AGG 0.713071 3_1:+69438235 Msa0371290:CDS
CCAAACCCAAATTGACATCG+GGG 0.737688 3_1:-69442057 None:intergenic
AGAGGCAGTAAAATTGACTG+GGG 0.742487 3_1:+69440077 Msa0371290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATAAAAAAGAAGAA+AGG - chr3_1:69435719-69435738 None:intergenic 10.0%
!! TTAAAGAAAAAATAATACTT+TGG - chr3_1:69436914-69436933 None:intergenic 10.0%
!! TGATTTATTAGTATTAATTA+CGG + chr3_1:69437455-69437474 Msa0371290:intron 10.0%
!!! TGATTATATCATTTAAAATT+TGG + chr3_1:69439886-69439905 Msa0371290:intron 10.0%
!!! GATTATATCATTTAAAATTT+GGG + chr3_1:69439887-69439906 Msa0371290:intron 10.0%
!!! AAAAGTATATAAATACAAAA+AGG - chr3_1:69440163-69440182 None:intergenic 10.0%
!!! TTTTAAAATGTATTTTATTG+AGG + chr3_1:69440903-69440922 Msa0371290:intron 10.0%
!!! AATATTTATAGTAATACTTT+TGG + chr3_1:69442167-69442186 Msa0371290:three_prime_UTR 10.0%
!!! TTAATTATATGCTTTTCTTT+TGG + chr3_1:69435774-69435793 Msa0371290:intron 15.0%
!! TTGAACTATAGAAATATAAT+AGG + chr3_1:69436160-69436179 Msa0371290:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr3_1:69436810-69436829 None:intergenic 15.0%
!! AAATTATCCTAATTAACTAT+TGG - chr3_1:69436948-69436967 None:intergenic 15.0%
!! AATAGTTAATTAGGATAATT+TGG + chr3_1:69436947-69436966 Msa0371290:intron 15.0%
!! ATTTGAACATAAATGAATTA+TGG + chr3_1:69437978-69437997 Msa0371290:intron 15.0%
!! ATATTTATCTTAAATTGCTT+GGG + chr3_1:69439614-69439633 Msa0371290:intron 15.0%
!!! GAAAGCAAATTTTTTTTTTA+TGG + chr3_1:69440209-69440228 Msa0371290:intron 15.0%
!!! ATTTTTTTTTTATGGTGTAT+AGG + chr3_1:69440217-69440236 Msa0371290:intron 15.0%
!! AATAAAACTTTAATTACTAG+CGG - chr3_1:69441724-69441743 None:intergenic 15.0%
!!! ATTATTTAGTCTTAAAAGAA+AGG + chr3_1:69441928-69441947 Msa0371290:three_prime_UTR 15.0%
!! AATAAAACACTATCATTCTA+TGG + chr3_1:69436125-69436144 Msa0371290:intron 20.0%
!! GTAGTATATAAACAATTCAT+CGG + chr3_1:69436182-69436201 Msa0371290:intron 20.0%
!! GTAACATAGTATTAATTGAA+GGG - chr3_1:69436884-69436903 None:intergenic 20.0%
!! TGTAACATAGTATTAATTGA+AGG - chr3_1:69436885-69436904 None:intergenic 20.0%
!! AAACAAACCAATAGTTAATT+AGG + chr3_1:69436938-69436957 Msa0371290:intron 20.0%
!!! ACATTGAAATTTGAAATGAA+TGG + chr3_1:69437120-69437139 Msa0371290:intron 20.0%
!! TAGTATACAGAAATAAGTAT+TGG - chr3_1:69437718-69437737 None:intergenic 20.0%
!!! ACCATTATTTGAAATTTATG+TGG + chr3_1:69437768-69437787 Msa0371290:CDS 20.0%
!! ACCACATAAATTTCAAATAA+TGG - chr3_1:69437772-69437791 None:intergenic 20.0%
!! TTAGTTAAAATGTTTGTTTG+TGG + chr3_1:69437897-69437916 Msa0371290:intron 20.0%
!! ACATAAATGAATTATGGAAT+TGG + chr3_1:69437984-69438003 Msa0371290:intron 20.0%
!! TAAAGGTAATTATTCAGAAA+AGG - chr3_1:69438105-69438124 None:intergenic 20.0%
!! TTTCTTAAAGAAAAAATTCC+AGG + chr3_1:69438377-69438396 Msa0371290:CDS 20.0%
!! TTCTTAAAGAAAAAATTCCA+GGG + chr3_1:69438378-69438397 Msa0371290:CDS 20.0%
!! TAGTATATTATAAACACTAG+AGG + chr3_1:69439048-69439067 Msa0371290:intron 20.0%
!!! CAACTATTTTTATGTTATGT+TGG - chr3_1:69439522-69439541 None:intergenic 20.0%
!! TTAAATCTAAGCATTTATGT+TGG - chr3_1:69439555-69439574 None:intergenic 20.0%
!! CATATTTATCTTAAATTGCT+TGG + chr3_1:69439613-69439632 Msa0371290:intron 20.0%
!! TAAATGATATAATCAACACA+AGG - chr3_1:69439881-69439900 None:intergenic 20.0%
!! TCAAATAAATGTGAGAAAAT+TGG + chr3_1:69440517-69440536 Msa0371290:intron 20.0%
!!! ATTTTACTGATTTACATCTT+TGG + chr3_1:69440931-69440950 Msa0371290:intron 20.0%
!! AAAAAAAGAAAGAAAGAATG+TGG + chr3_1:69442094-69442113 Msa0371290:three_prime_UTR 20.0%
! AGATAAAGATTAAGATGGAA+TGG - chr3_1:69435380-69435399 None:intergenic 25.0%
!!! TTGTTTTGAAAAGAAAAGGT+GGG - chr3_1:69435530-69435549 None:intergenic 25.0%
! TTAAAGACTGAATTGAATGA+AGG - chr3_1:69435932-69435951 None:intergenic 25.0%
! CTATCATTCTATGGTATATT+TGG + chr3_1:69436134-69436153 Msa0371290:intron 25.0%
!! TTCTCAAGTTCTTTAAGAAT+AGG + chr3_1:69436209-69436228 Msa0371290:intron 25.0%
! TGATCGATTGAAAATAGTTT+AGG + chr3_1:69436239-69436258 Msa0371290:intron 25.0%
! AATTATCACTCTCTCTTATT+TGG - chr3_1:69436327-69436346 None:intergenic 25.0%
! ATAAGAGAGAGTGATAATTT+AGG + chr3_1:69436328-69436347 Msa0371290:intron 25.0%
! TAAGAGAGAGTGATAATTTA+GGG + chr3_1:69436329-69436348 Msa0371290:intron 25.0%
! GTAAGATTATACCTTCAATT+TGG - chr3_1:69436356-69436375 None:intergenic 25.0%
!!! TTCAAAATGAATGTCACTTT+CGG + chr3_1:69436821-69436840 Msa0371290:intron 25.0%
! ATGTCTCTAGTAAGAATTAT+TGG + chr3_1:69437060-69437079 Msa0371290:intron 25.0%
! ATCACTTATTACAAATCTCA+CGG - chr3_1:69437207-69437226 None:intergenic 25.0%
! ACATCATCTATTATTATCGT+GGG - chr3_1:69437345-69437364 None:intergenic 25.0%
! TAATAAATCATGACAACACT+TGG - chr3_1:69437445-69437464 None:intergenic 25.0%
! AGTATTAATTACGGTACTAA+TGG + chr3_1:69437464-69437483 Msa0371290:intron 25.0%
! ATTCACAATTCACAAAAAGA+TGG - chr3_1:69437497-69437516 None:intergenic 25.0%
! AAAGGTAAAAAACAGTTGTT+GGG - chr3_1:69437535-69437554 None:intergenic 25.0%
! AAAAGGTAAAAAACAGTTGT+TGG - chr3_1:69437536-69437555 None:intergenic 25.0%
!!! TGTTTTTTACCTTTTTATGC+AGG + chr3_1:69437541-69437560 Msa0371290:intron 25.0%
! TACGTATTATTCTACCAAAA+GGG - chr3_1:69437604-69437623 None:intergenic 25.0%
! ATACGTATTATTCTACCAAA+AGG - chr3_1:69437605-69437624 None:intergenic 25.0%
! AAACTAGAAAGATTATACCT+TGG - chr3_1:69437668-69437687 None:intergenic 25.0%
! TTGTAACTTAATGATACACT+AGG + chr3_1:69437861-69437880 Msa0371290:intron 25.0%
! TGTAACTTAATGATACACTA+GGG + chr3_1:69437862-69437881 Msa0371290:intron 25.0%
!! ATGAACAAGTTTCTTCTTTT+AGG - chr3_1:69437950-69437969 None:intergenic 25.0%
!!! GATTGATGTTTAGGTTTTTT+CGG + chr3_1:69438039-69438058 Msa0371290:intron 25.0%
! TCAGAAAAGGAAAATATCAA+AGG - chr3_1:69438092-69438111 None:intergenic 25.0%
! TATTTGACAACACACTTAAT+AGG + chr3_1:69438151-69438170 Msa0371290:intron 25.0%
! TATGAACATTAATGTTGAAG+AGG + chr3_1:69438415-69438434 Msa0371290:CDS 25.0%
! CGATTCTATTAAACAAATCA+TGG + chr3_1:69438454-69438473 Msa0371290:CDS 25.0%
! TTCTATTAAACAAATCATGG+AGG + chr3_1:69438457-69438476 Msa0371290:CDS 25.0%
! AAGATGGTAATAAAACTGAT+GGG + chr3_1:69438480-69438499 Msa0371290:CDS 25.0%
! TTAGATATGAAGCTCTTTAT+TGG + chr3_1:69438578-69438597 Msa0371290:CDS 25.0%
! CAATGAAGATAATTCTTCTA+AGG + chr3_1:69438616-69438635 Msa0371290:CDS 25.0%
! ATTATTATCATGATCGTAAC+TGG - chr3_1:69438959-69438978 None:intergenic 25.0%
!! ATTTTCATTTCTCCAAAATC+TGG + chr3_1:69439270-69439289 Msa0371290:intron 25.0%
!! TTTTCATTTCTCCAAAATCT+GGG + chr3_1:69439271-69439290 Msa0371290:intron 25.0%
!!! TTCTTACTTTCAAGTTTCAA+CGG - chr3_1:69439316-69439335 None:intergenic 25.0%
! ATAGCCAACTAAAAATTGAT+GGG - chr3_1:69439413-69439432 None:intergenic 25.0%
! AACATAATGTCATATTCTTG+AGG + chr3_1:69439579-69439598 Msa0371290:intron 25.0%
!!! AAGAAAAAGCAGTATTTTTG+AGG - chr3_1:69439682-69439701 None:intergenic 25.0%
! ATAACAGATTGTTTGAAAAC+AGG - chr3_1:69440379-69440398 None:intergenic 25.0%
!! CAAAACAACTTAAGCTTTTT+GGG + chr3_1:69440630-69440649 Msa0371290:intron 25.0%
!! AACTTTTCAAAAGAAGAATG+AGG - chr3_1:69440739-69440758 None:intergenic 25.0%
! GAATAATTACTATTCGAAAG+AGG - chr3_1:69440840-69440859 None:intergenic 25.0%
! ATGAAAACTCAAGAAAACTT+GGG - chr3_1:69440964-69440983 None:intergenic 25.0%
! AATGAAAACTCAAGAAAACT+TGG - chr3_1:69440965-69440984 None:intergenic 25.0%
!! GTTTTCTTGAGTTTTCATTT+TGG + chr3_1:69440966-69440985 Msa0371290:intron 25.0%
! AAACAGAATGCAAGTTATAA+AGG + chr3_1:69441044-69441063 Msa0371290:intron 25.0%
! ATTAATGTTCTTCTGTGTTT+AGG + chr3_1:69441246-69441265 Msa0371290:intron 25.0%
! TTAATGTTCTTCTGTGTTTA+GGG + chr3_1:69441247-69441266 Msa0371290:intron 25.0%
! GCAACAAAACGAAATTATAA+AGG - chr3_1:69441528-69441547 None:intergenic 25.0%
! CATATGATAACATAGAGATT+GGG - chr3_1:69441558-69441577 None:intergenic 25.0%
! ACATATGATAACATAGAGAT+TGG - chr3_1:69441559-69441578 None:intergenic 25.0%
! AAAGAATGTGGTTAAAGTAT+TGG + chr3_1:69442106-69442125 Msa0371290:three_prime_UTR 25.0%
!!! TTTTGGGATAAGTTTTCTGT+TGG - chr3_1:69435300-69435319 None:intergenic 30.0%
TGAAGAAGATTGAGACAAAA+AGG - chr3_1:69435347-69435366 None:intergenic 30.0%
GGAGAAGATAAAGATTAAGA+TGG - chr3_1:69435385-69435404 None:intergenic 30.0%
!!! TGTTGTTTCTAACAACGTTT+TGG - chr3_1:69435406-69435425 None:intergenic 30.0%
!!! GTTGTTTTGAAAAGAAAAGG+TGG - chr3_1:69435531-69435550 None:intergenic 30.0%
!!! AGGGTTGTTTTGAAAAGAAA+AGG - chr3_1:69435534-69435553 None:intergenic 30.0%
TTGAAAAGACTGAGATTGAA+GGG - chr3_1:69435553-69435572 None:intergenic 30.0%
! GCTTTTCTTTTGGCAAATTT+TGG + chr3_1:69435784-69435803 Msa0371290:intron 30.0%
TTGTAGACTGAAAATAGTTG+AGG + chr3_1:69436269-69436288 Msa0371290:intron 30.0%
TAATTTAGGGACCAAATTGA+AGG + chr3_1:69436342-69436361 Msa0371290:intron 30.0%
TGAAATTATGTCTCAGTTGA+AGG + chr3_1:69436511-69436530 Msa0371290:CDS 30.0%
! TCTCTTGATTTTCCTACTTA+TGG + chr3_1:69436566-69436585 Msa0371290:intron 30.0%
!!! TGCATAATTTTGAAGCATCA+TGG - chr3_1:69436647-69436666 None:intergenic 30.0%
TCAAAATTATGCAGATACAC+TGG + chr3_1:69436654-69436673 Msa0371290:CDS 30.0%
!!! GACACTCATTTTGAAACATA+GGG - chr3_1:69436780-69436799 None:intergenic 30.0%
TCACTTATTACAAATCTCAC+GGG - chr3_1:69437206-69437225 None:intergenic 30.0%
CACATCATCTATTATTATCG+TGG - chr3_1:69437346-69437365 None:intergenic 30.0%
ATTGTGAATAATGCAGTTTC+CGG + chr3_1:69437372-69437391 Msa0371290:intron 30.0%
ACAAATCCATTTGAAAGATG+AGG - chr3_1:69437414-69437433 None:intergenic 30.0%
! TTTTTACCTTTTTATGCAGG+TGG + chr3_1:69437544-69437563 Msa0371290:intron 30.0%
! TTTTACCTTTTTATGCAGGT+GGG + chr3_1:69437545-69437564 Msa0371290:intron 30.0%
AGAATAATACGTATTAGTCC+TGG + chr3_1:69437611-69437630 Msa0371290:CDS 30.0%
!!! CTTTTTTCCTTCAAGTGATT+GGG + chr3_1:69437689-69437708 Msa0371290:intron 30.0%
!!! TTTTTTCCTTCAAGTGATTG+GGG + chr3_1:69437690-69437709 Msa0371290:intron 30.0%
TACAAACAACAAGCATCATT+TGG - chr3_1:69437846-69437865 None:intergenic 30.0%
!! CAAGCTTTTGATTGATGTTT+AGG + chr3_1:69438030-69438049 Msa0371290:intron 30.0%
AGCATTACGTAAACTACTAA+AGG - chr3_1:69438122-69438141 None:intergenic 30.0%
GAAGATGGTAATAAAACTGA+TGG + chr3_1:69438479-69438498 Msa0371290:CDS 30.0%
AGATGGTAATAAAACTGATG+GGG + chr3_1:69438481-69438500 Msa0371290:CDS 30.0%
GGAAATAAAGAACATGGAAA+GGG + chr3_1:69438661-69438680 Msa0371290:CDS 30.0%
TAAAGTTCGCAATATCAAAG+TGG + chr3_1:69438739-69438758 Msa0371290:CDS 30.0%
TTCTGATAAAGTCTCTTCTA+AGG + chr3_1:69438826-69438845 Msa0371290:CDS 30.0%
TATTATAAACACTAGAGGTG+TGG + chr3_1:69439053-69439072 Msa0371290:intron 30.0%
ACGTATATTAGAGAAGAAAG+TGG + chr3_1:69439141-69439160 Msa0371290:intron 30.0%
TTTCATTTCTCCAAAATCTG+GGG + chr3_1:69439272-69439291 Msa0371290:intron 30.0%
TAGCCAACTAAAAATTGATG+GGG - chr3_1:69439412-69439431 None:intergenic 30.0%
CATAGCCAACTAAAAATTGA+TGG - chr3_1:69439414-69439433 None:intergenic 30.0%
CAATGTAGATTATGACCATA+TGG - chr3_1:69439444-69439463 None:intergenic 30.0%
!!! ATCTACTTTTTTTCTGTGCT+TGG - chr3_1:69439781-69439800 None:intergenic 30.0%
CCGGTTAAAATATGTATCTT+CGG - chr3_1:69439807-69439826 None:intergenic 30.0%
!!! CCGAAGATACATATTTTAAC+CGG + chr3_1:69439804-69439823 Msa0371290:CDS 30.0%
!! GCTTATAGAATGGATTTTTC+TGG + chr3_1:69439919-69439938 Msa0371290:intron 30.0%
!!! GATTTTTCTGGTTAAAATGC+AGG + chr3_1:69439931-69439950 Msa0371290:intron 30.0%
!!! CGAGTTTTTTGAATATGTAG+AGG + chr3_1:69440059-69440078 Msa0371290:CDS 30.0%
!! TGACTTTACCAATTTTAGCA+CGG - chr3_1:69440250-69440269 None:intergenic 30.0%
GTGGTAAATACATATTCACA+TGG + chr3_1:69440311-69440330 Msa0371290:intron 30.0%
! TTCTCACATTTATTTGAAGC+AGG - chr3_1:69440514-69440533 None:intergenic 30.0%
TTTGAAAAAAGCTATTCCAC+CGG + chr3_1:69440561-69440580 Msa0371290:intron 30.0%
TTATGTAAAGACAATGCATG+TGG + chr3_1:69440605-69440624 Msa0371290:intron 30.0%
! GCAAAACAACTTAAGCTTTT+TGG + chr3_1:69440629-69440648 Msa0371290:intron 30.0%
TTCACACTATTTGATCAAAG+AGG - chr3_1:69440701-69440720 None:intergenic 30.0%
! TTTTCAAAAGAAGAATGAGG+TGG - chr3_1:69440736-69440755 None:intergenic 30.0%
GTTAAATATTAGCACATGTC+AGG + chr3_1:69440756-69440775 Msa0371290:intron 30.0%
GAATGACTTCAGCATTAAAT+TGG - chr3_1:69440801-69440820 None:intergenic 30.0%
TTCAACTATGAGGAAATTGA+TGG - chr3_1:69440867-69440886 None:intergenic 30.0%
TTTCCTCATAGTTGAAATGT+TGG + chr3_1:69440871-69440890 Msa0371290:intron 30.0%
!! TTGGTTTTCGAAATCCAAAA+TGG + chr3_1:69441087-69441106 Msa0371290:CDS 30.0%
! TGGTTTTCGAAATCCAAAAT+GGG + chr3_1:69441088-69441107 Msa0371290:CDS 30.0%
TTAATGGCAAGGTAAATTAG+TGG + chr3_1:69441132-69441151 Msa0371290:intron 30.0%
! TCAATACCCAAGCATATTTT+TGG + chr3_1:69441176-69441195 Msa0371290:intron 30.0%
AGGGAAGAAAGAAATTTGAA+GGG - chr3_1:69441382-69441401 None:intergenic 30.0%
GAAATTATAAAGGAATCGTG+AGG - chr3_1:69441518-69441537 None:intergenic 30.0%
CATAACCATAATGCACATAA+AGG - chr3_1:69441644-69441663 None:intergenic 30.0%
CTTTATGTGCATTATGGTTA+TGG + chr3_1:69441642-69441661 Msa0371290:three_prime_UTR 30.0%
AATAAAGAGTTGCATATCTG+TGG + chr3_1:69441884-69441903 Msa0371290:three_prime_UTR 30.0%
TGTTGTTAAATCACTTGAGT+TGG + chr3_1:69441973-69441992 Msa0371290:three_prime_UTR 30.0%
TGATGTGTAGAGAGATAAAA+AGG + chr3_1:69442190-69442209 Msa0371290:three_prime_UTR 30.0%
!! TTGTTGTGCTGTTGTGTTTT+GGG - chr3_1:69435316-69435335 None:intergenic 35.0%
TAGAAACAACAACCCAAACA+TGG + chr3_1:69435415-69435434 Msa0371290:CDS 35.0%
AAAAGGTGGGTGGTTTATTA+GGG - chr3_1:69435517-69435536 None:intergenic 35.0%
!! TTTTGAAAAGAAAAGGTGGG+TGG - chr3_1:69435527-69435546 None:intergenic 35.0%
CTTGAAAAGACTGAGATTGA+AGG - chr3_1:69435554-69435573 None:intergenic 35.0%
!! CAATCTCAGTCTTTTCAAGA+AGG + chr3_1:69435555-69435574 Msa0371290:CDS 35.0%
GTTAAGAGACGATGTTTCAT+TGG - chr3_1:69435621-69435640 None:intergenic 35.0%
ATGAAACATCGTCTCTTAAC+TGG + chr3_1:69435621-69435640 Msa0371290:CDS 35.0%
TGAAACATCGTCTCTTAACT+GGG + chr3_1:69435622-69435641 Msa0371290:CDS 35.0%
CCTGTTCAATATCATCGAAA+TGG - chr3_1:69435667-69435686 None:intergenic 35.0%
CCATTTCGATGATATTGAAC+AGG + chr3_1:69435664-69435683 Msa0371290:CDS 35.0%
CAAGATTTCTGAGCAAAAAG+GGG - chr3_1:69435823-69435842 None:intergenic 35.0%
GCAAGATTTCTGAGCAAAAA+GGG - chr3_1:69435824-69435843 None:intergenic 35.0%
TGCAAGATTTCTGAGCAAAA+AGG - chr3_1:69435825-69435844 None:intergenic 35.0%
!! GTGTTTTATTGTTAACCCTC+CGG - chr3_1:69436115-69436134 None:intergenic 35.0%
ACTTGAAGATGCTATTGAGA+AGG + chr3_1:69436421-69436440 Msa0371290:intron 35.0%
AAGAAGCAGCAAAGCTAAAA+AGG + chr3_1:69436453-69436472 Msa0371290:CDS 35.0%
AGAAGCAGCAAAGCTAAAAA+GGG + chr3_1:69436454-69436473 Msa0371290:CDS 35.0%
AATTTCAGCAACACTATCCT+TGG - chr3_1:69436498-69436517 None:intergenic 35.0%
ACGATAAACAAGCCATAAGT+AGG - chr3_1:69436581-69436600 None:intergenic 35.0%
!!! CGACACTCATTTTGAAACAT+AGG - chr3_1:69436781-69436800 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG + chr3_1:69437004-69437023 Msa0371290:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr3_1:69437030-69437049 Msa0371290:intron 35.0%
TTGTGAATAATGCAGTTTCC+GGG + chr3_1:69437373-69437392 Msa0371290:intron 35.0%
AGATGACCTCATCTTTCAAA+TGG + chr3_1:69437405-69437424 Msa0371290:intron 35.0%
ATTCACAAAAAGATGGCTTG+AGG - chr3_1:69437490-69437509 None:intergenic 35.0%
! AGGGTACTCAAAAAATTCAG+AGG + chr3_1:69437577-69437596 Msa0371290:CDS 35.0%
! AAAAATTCAGAGGACCCTTT+TGG + chr3_1:69437587-69437606 Msa0371290:CDS 35.0%
AATACGTATTAGTCCTGGTA+TGG + chr3_1:69437616-69437635 Msa0371290:CDS 35.0%
ATACGTATTAGTCCTGGTAT+GGG + chr3_1:69437617-69437636 Msa0371290:CDS 35.0%
CCAATCACTTGAAGGAAAAA+AGG - chr3_1:69437691-69437710 None:intergenic 35.0%
!!! CCTTTTTTCCTTCAAGTGAT+TGG + chr3_1:69437688-69437707 Msa0371290:intron 35.0%
GTTACTCGTTGAATTTCCTT+TGG - chr3_1:69438195-69438214 None:intergenic 35.0%
! CTTTTAGCAAGTAAAGATGG+GGG - chr3_1:69438221-69438240 None:intergenic 35.0%
! CCTTTTAGCAAGTAAAGATG+GGG - chr3_1:69438222-69438241 None:intergenic 35.0%
! GCCTTTTAGCAAGTAAAGAT+GGG - chr3_1:69438223-69438242 None:intergenic 35.0%
TGAGAATTTGTCTTCAGTTG+AGG + chr3_1:69438259-69438278 Msa0371290:CDS 35.0%
TGAGAAAAACAGCAATGTTG+AGG + chr3_1:69438319-69438338 Msa0371290:CDS 35.0%
! ATAACTTTGACTTTCAACCC+TGG - chr3_1:69438398-69438417 None:intergenic 35.0%
AAACAAATCATGGAGGAAGA+TGG + chr3_1:69438464-69438483 Msa0371290:CDS 35.0%
! TAAATCCTTTTCTTCATCCG+AGG - chr3_1:69438561-69438580 None:intergenic 35.0%
GATATGAAGCTCTTTATTGG+CGG + chr3_1:69438581-69438600 Msa0371290:CDS 35.0%
TGAATTTATACGTCTTCCAG+CGG + chr3_1:69438640-69438659 Msa0371290:CDS 35.0%
CGGAAATAAAGAACATGGAA+AGG + chr3_1:69438660-69438679 Msa0371290:CDS 35.0%
CTTTCCTCTTACATATACCT+AGG + chr3_1:69438687-69438706 Msa0371290:CDS 35.0%
TTCTCCTAGGTATATGTAAG+AGG - chr3_1:69438694-69438713 None:intergenic 35.0%
TCATTATCGAGATTTCTCCT+AGG - chr3_1:69438707-69438726 None:intergenic 35.0%
!! GAAAGCATTTGTCATTGGTA+AGG - chr3_1:69439240-69439259 None:intergenic 35.0%
!! TGTGTGAAAGCATTTGTCAT+TGG - chr3_1:69439245-69439264 None:intergenic 35.0%
TTCATTTCTCCAAAATCTGG+GGG + chr3_1:69439273-69439292 Msa0371290:intron 35.0%
TGGCTATGTACATATCCATA+TGG + chr3_1:69439426-69439445 Msa0371290:intron 35.0%
CTTGTCAATGAACTGACTAA+TGG + chr3_1:69439699-69439718 Msa0371290:intron 35.0%
TAAAATGCAGGACTCTATGT+TGG + chr3_1:69439943-69439962 Msa0371290:intron 35.0%
GTCCAATTGAGACGAAAATT+TGG + chr3_1:69439994-69440013 Msa0371290:CDS 35.0%
! GTCCAAATTTTCGTCTCAAT+TGG - chr3_1:69439999-69440018 None:intergenic 35.0%
TGAGACGAAAATTTGGACAT+TGG + chr3_1:69440001-69440020 Msa0371290:CDS 35.0%
ATTTGGACATTGGAATGATG+TGG + chr3_1:69440011-69440030 Msa0371290:CDS 35.0%
TAGAGGCAGTAAAATTGACT+GGG + chr3_1:69440076-69440095 Msa0371290:CDS 35.0%
! CTTTTATATGTGAGCATGAC+AGG + chr3_1:69440187-69440206 Msa0371290:intron 35.0%
GGAAAAAATAGTGCACACAT+AGG - chr3_1:69440474-69440493 None:intergenic 35.0%
! CAGGAAAAAAGTGCACAAAT+AGG - chr3_1:69440495-69440514 None:intergenic 35.0%
!! TTTTGGGTAGTTAGTTCAGT+CGG + chr3_1:69440646-69440665 Msa0371290:intron 35.0%
AAATATTAGCACATGTCAGG+CGG + chr3_1:69440759-69440778 Msa0371290:intron 35.0%
TACTATTCGAAAGAGGAATG+AGG - chr3_1:69440833-69440852 None:intergenic 35.0%
CAACCAACATTTCAACTATG+AGG - chr3_1:69440877-69440896 None:intergenic 35.0%
TGCATTCTGTTTGTATACGA+GGG - chr3_1:69441036-69441055 None:intergenic 35.0%
TTGCATTCTGTTTGTATACG+AGG - chr3_1:69441037-69441056 None:intergenic 35.0%
AATGCAAGTTATAAAGGCCA+AGG + chr3_1:69441050-69441069 Msa0371290:CDS 35.0%
ATGCAAGTTATAAAGGCCAA+GGG + chr3_1:69441051-69441070 Msa0371290:CDS 35.0%
!! GAAATCCAAAATGGGTTGAT+GGG + chr3_1:69441096-69441115 Msa0371290:CDS 35.0%
!! AAATCCAAAATGGGTTGATG+GGG + chr3_1:69441097-69441116 Msa0371290:CDS 35.0%
ATTGCTTCAACTTAATGGCA+AGG + chr3_1:69441121-69441140 Msa0371290:CDS 35.0%
GTGAGACCAAAAATATGCTT+GGG - chr3_1:69441185-69441204 None:intergenic 35.0%
AGTGAGACCAAAAATATGCT+TGG - chr3_1:69441186-69441205 None:intergenic 35.0%
TAGCACAAGAAAACTTTGCT+CGG - chr3_1:69441323-69441342 None:intergenic 35.0%
CTTACTCAGGTAGTTTCAAT+CGG - chr3_1:69441351-69441370 None:intergenic 35.0%
CAGGGAAGAAAGAAATTTGA+AGG - chr3_1:69441383-69441402 None:intergenic 35.0%
ACTATCGCTCAATCAAGAAA+AGG - chr3_1:69441460-69441479 None:intergenic 35.0%
! GCAAATGTTAGTCTGTTAGT+AGG + chr3_1:69441752-69441771 Msa0371290:three_prime_UTR 35.0%
! TAGTTTTCGTGGTTTGAACT+CGG + chr3_1:69441780-69441799 Msa0371290:three_prime_UTR 35.0%
GAACCTTCTTAAAACTCTTC+TGG + chr3_1:69441803-69441822 Msa0371290:three_prime_UTR 35.0%
!!! ACACCAGAAGAGTTTTAAGA+AGG - chr3_1:69441809-69441828 None:intergenic 35.0%
ATATATAGGGATCGATGTTG+AGG - chr3_1:69442146-69442165 None:intergenic 35.0%
!! GTTGTTGTGCTGTTGTGTTT+TGG - chr3_1:69435317-69435336 None:intergenic 40.0%
ATGAAGCCATCACCATGTTT+GGG - chr3_1:69435430-69435449 None:intergenic 40.0%
AATGAAGCCATCACCATGTT+TGG - chr3_1:69435431-69435450 None:intergenic 40.0%
!! AAACATGGTGATGGCTTCAT+TGG + chr3_1:69435430-69435449 Msa0371290:CDS 40.0%
!! AACATGGTGATGGCTTCATT+GGG + chr3_1:69435431-69435450 Msa0371290:CDS 40.0%
GTGAAGATTGAAACGTGAAG+GGG - chr3_1:69435495-69435514 None:intergenic 40.0%
GGTGAAGATTGAAACGTGAA+GGG - chr3_1:69435496-69435515 None:intergenic 40.0%
GAAAAGGTGGGTGGTTTATT+AGG - chr3_1:69435518-69435537 None:intergenic 40.0%
TGTTTCATTGGTGGAATTGG+AGG - chr3_1:69435609-69435628 None:intergenic 40.0%
CGATGTTTCATTGGTGGAAT+TGG - chr3_1:69435612-69435631 None:intergenic 40.0%
AAGAGACGATGTTTCATTGG+TGG - chr3_1:69435618-69435637 None:intergenic 40.0%
TTAACTGGGATTGGAATCGT+TGG + chr3_1:69435636-69435655 Msa0371290:CDS 40.0%
AAGCTTTGCATCTCTTCTCA+AGG + chr3_1:69435691-69435710 Msa0371290:CDS 40.0%
AACACTTGAGCTCAATCACT+TGG - chr3_1:69435956-69435975 None:intergenic 40.0%
CCAAAAGATTCGTCCTTAAG+TGG - chr3_1:69435987-69436006 None:intergenic 40.0%
! CCACTTAAGGACGAATCTTT+TGG + chr3_1:69435984-69436003 Msa0371290:intron 40.0%
TATAGTTGAAGCGACATCCA+AGG + chr3_1:69436478-69436497 Msa0371290:CDS 40.0%
TTATGCAGATACACTGGAAG+TGG + chr3_1:69436660-69436679 Msa0371290:CDS 40.0%
AGCCAATTGCACACAGATTA+AGG - chr3_1:69437009-69437028 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr3_1:69437034-69437053 Msa0371290:intron 40.0%
CACGGGATCTTAATTTCAGT+GGG - chr3_1:69437189-69437208 None:intergenic 40.0%
TCACGGGATCTTAATTTCAG+TGG - chr3_1:69437190-69437209 None:intergenic 40.0%
TTTCCCAACCAATTGTGTGT+GGG - chr3_1:69437320-69437339 None:intergenic 40.0%
! TTTTCCCAACCAATTGTGTG+TGG - chr3_1:69437321-69437340 None:intergenic 40.0%
TGTGAATAATGCAGTTTCCG+GGG + chr3_1:69437374-69437393 Msa0371290:intron 40.0%
AGGTCATCTGTTATATTCCC+CGG - chr3_1:69437394-69437413 None:intergenic 40.0%
AAACAGTTGTTGGGCATCAA+AGG - chr3_1:69437526-69437545 None:intergenic 40.0%
ATACTACAGACAGTTGCTCA+CGG + chr3_1:69437732-69437751 Msa0371290:intron 40.0%
TGACGACACATATCATATGC+AGG + chr3_1:69437801-69437820 Msa0371290:CDS 40.0%
AACAACAAGCATCATTTGGC+TGG - chr3_1:69437842-69437861 None:intergenic 40.0%
! CCCCATCTTTACTTGCTAAA+AGG + chr3_1:69438219-69438238 Msa0371290:CDS 40.0%
! GGCCTTTTAGCAAGTAAAGA+TGG - chr3_1:69438224-69438243 None:intergenic 40.0%
GAAGACAAATTCTCAACCTC+TGG - chr3_1:69438254-69438273 None:intergenic 40.0%
GAAAAACAGCAATGTTGAGG+CGG + chr3_1:69438322-69438341 Msa0371290:CDS 40.0%
TGATGGGGAAGATGATAATC+TGG + chr3_1:69438496-69438515 Msa0371290:CDS 40.0%
TAATCTGGATGAACCTGATG+AGG + chr3_1:69438511-69438530 Msa0371290:CDS 40.0%
TAATGCCTCGGATGAAGAAA+AGG + chr3_1:69438553-69438572 Msa0371290:CDS 40.0%
TCCAGCGGAAATAAAGAACA+TGG + chr3_1:69438655-69438674 Msa0371290:CDS 40.0%
! TCCATGTTCTTTATTTCCGC+TGG - chr3_1:69438659-69438678 None:intergenic 40.0%
GGAGAAATCTCGATAATGAC+AGG + chr3_1:69438708-69438727 Msa0371290:CDS 40.0%
TATGCCTTCTGATGTTGCTA+AGG + chr3_1:69438793-69438812 Msa0371290:CDS 40.0%
! TGATGTTGCTAAGGCCTTTT+GGG + chr3_1:69438802-69438821 Msa0371290:CDS 40.0%
GACTTTATCAGAACCCCAAA+AGG - chr3_1:69438819-69438838 None:intergenic 40.0%
ATGTTGTTGCACATCAAGAG+AGG + chr3_1:69439079-69439098 Msa0371290:intron 40.0%
!!! CAGCCCCATCAATTTTTAGT+TGG + chr3_1:69439406-69439425 Msa0371290:intron 40.0%
TCATATTCTTGAGGTCTGTG+CGG + chr3_1:69439588-69439607 Msa0371290:intron 40.0%
TTGGATACCTAAGTCAAGTG+AGG - chr3_1:69439725-69439744 None:intergenic 40.0%
! GACAATTTCACGCATGCTTT+TGG - chr3_1:69439744-69439763 None:intergenic 40.0%
AAAGGATCAAAATCCCCTCT+GGG - chr3_1:69439839-69439858 None:intergenic 40.0%
TGGACTATTTCGATGCCATA+AGG - chr3_1:69439979-69439998 None:intergenic 40.0%
GTAGAGGCAGTAAAATTGAC+TGG + chr3_1:69440075-69440094 Msa0371290:CDS 40.0%
AGAGGCAGTAAAATTGACTG+GGG + chr3_1:69440077-69440096 Msa0371290:CDS 40.0%
! TTGAAAAGGCATAAACCACC+TGG - chr3_1:69440122-69440141 None:intergenic 40.0%
GTGACATTCCGTGCTAAAAT+TGG + chr3_1:69440239-69440258 Msa0371290:CDS 40.0%
ATTCATCAGGATACAGTCCA+CGG - chr3_1:69440286-69440305 None:intergenic 40.0%
TGGACTGTATCCTGATGAAT+TGG + chr3_1:69440286-69440305 Msa0371290:CDS 40.0%
GGACTGTATCCTGATGAATT+GGG + chr3_1:69440287-69440306 Msa0371290:CDS 40.0%
TTTACCACTCCCAATTCATC+AGG - chr3_1:69440299-69440318 None:intergenic 40.0%
AATAGTGCACACATAGGCAT+AGG - chr3_1:69440468-69440487 None:intergenic 40.0%
TTTGGGTAGTTAGTTCAGTC+GGG + chr3_1:69440647-69440666 Msa0371290:intron 40.0%
!! CGAAATCCAAAATGGGTTGA+TGG + chr3_1:69441095-69441114 Msa0371290:CDS 40.0%
! AATTCCCCATCAACCCATTT+TGG - chr3_1:69441104-69441123 None:intergenic 40.0%
GGGGAATTGCTTCAACTTAA+TGG + chr3_1:69441116-69441135 Msa0371290:CDS 40.0%
! TTCTTCTGTGTTTAGGGCAT+GGG + chr3_1:69441253-69441272 Msa0371290:intron 40.0%
AGCACAAGAAAACTTTGCTC+GGG - chr3_1:69441322-69441341 None:intergenic 40.0%
!! AAGGGTTTTGTAGCTTACTC+AGG - chr3_1:69441364-69441383 None:intergenic 40.0%
ATTTCTTTCTTCCCTGACGT+TGG + chr3_1:69441387-69441406 Msa0371290:three_prime_UTR 40.0%
TACTGACAAAATAGTGTGCC+AGG + chr3_1:69441595-69441614 Msa0371290:three_prime_UTR 40.0%
TAAGGTCTTTCTATAGCTCC+TGG - chr3_1:69441616-69441635 None:intergenic 40.0%
AGGAGCTATAGAAAGACCTT+AGG + chr3_1:69441615-69441634 Msa0371290:three_prime_UTR 40.0%
GGAGCTATAGAAAGACCTTA+GGG + chr3_1:69441616-69441635 Msa0371290:three_prime_UTR 40.0%
ATGCACATAAAGGATCCCTA+AGG - chr3_1:69441634-69441653 None:intergenic 40.0%
GGGATCCTTTATGTGCATTA+TGG + chr3_1:69441636-69441655 Msa0371290:three_prime_UTR 40.0%
!!! AGTAGGCATGTTAGTTTTCG+TGG + chr3_1:69441769-69441788 Msa0371290:three_prime_UTR 40.0%
! AGTTTTCGTGGTTTGAACTC+GGG + chr3_1:69441781-69441800 Msa0371290:three_prime_UTR 40.0%
!! TTAAATCACTTGAGTTGGCC+TGG + chr3_1:69441978-69441997 Msa0371290:three_prime_UTR 40.0%
ATTGTCCCCGATGTCAATTT+GGG + chr3_1:69442052-69442071 Msa0371290:three_prime_UTR 40.0%
AGCCAAACCCAAATTGACAT+CGG - chr3_1:69442062-69442081 None:intergenic 40.0%
! CAATTTGGGTTTGGCTAGTT+TGG + chr3_1:69442066-69442085 Msa0371290:three_prime_UTR 40.0%
CAACAACCCAAACATGGTGA+TGG + chr3_1:69435421-69435440 Msa0371290:CDS 45.0%
GTTGGAGAAGAAGATGGCTT+GGG - chr3_1:69435462-69435481 None:intergenic 45.0%
TGTTGGAGAAGAAGATGGCT+TGG - chr3_1:69435463-69435482 None:intergenic 45.0%
GGTTGTGTTGGAGAAGAAGA+TGG - chr3_1:69435468-69435487 None:intergenic 45.0%
ATTGAAACGTGAAGGGGTTG+TGG - chr3_1:69435489-69435508 None:intergenic 45.0%
GGGTGAAGATTGAAACGTGA+AGG - chr3_1:69435497-69435516 None:intergenic 45.0%
CATCGTCTCTTAACTGGGAT+TGG + chr3_1:69435627-69435646 Msa0371290:CDS 45.0%
GTGTTAACGAGCTCCACTTA+AGG + chr3_1:69435971-69435990 Msa0371290:intron 45.0%
TGAACCCAAGTTCGATTCCT+CGG + chr3_1:69436008-69436027 Msa0371290:intron 45.0%
GAATAATACCACTTCCACCG+AGG - chr3_1:69436028-69436047 None:intergenic 45.0%
GGTGGAAGTGGTATTATTCC+TGG + chr3_1:69436029-69436048 Msa0371290:intron 45.0%
AGGGTAAGTAAAGTCTAGCC+AGG - chr3_1:69436050-69436069 None:intergenic 45.0%
TTTACTTACCCTTCCGACCA+AGG + chr3_1:69436058-69436077 Msa0371290:intron 45.0%
! GGTCAGAGCAGATTTTGTCT+TGG + chr3_1:69436532-69436551 Msa0371290:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3_1:69437033-69437052 Msa0371290:intron 45.0%
AGTTCACACCCACACACAAT+TGG + chr3_1:69437309-69437328 Msa0371290:intron 45.0%
ACACCCACACACAATTGGTT+GGG + chr3_1:69437314-69437333 Msa0371290:intron 45.0%
! ACCTTTTTATGCAGGTGGGT+TGG + chr3_1:69437549-69437568 Msa0371290:intron 45.0%
ACCAACCCACCTGCATAAAA+AGG - chr3_1:69437553-69437572 None:intergenic 45.0%
!!! TTTTTATGCAGGTGGGTTGG+TGG + chr3_1:69437552-69437571 Msa0371290:intron 45.0%
!!! TTTTATGCAGGTGGGTTGGT+GGG + chr3_1:69437553-69437572 Msa0371290:intron 45.0%
TTGGCAAGAGTTACAGTCCA+AGG + chr3_1:69437648-69437667 Msa0371290:CDS 45.0%
TAGCAAGTAAAGATGGGGGA+AGG - chr3_1:69438217-69438236 None:intergenic 45.0%
TAAAAGGCCATCGAAACCAG+AGG + chr3_1:69438235-69438254 Msa0371290:CDS 45.0%
! TTCTCAACCTCTGGTTTCGA+TGG - chr3_1:69438245-69438264 None:intergenic 45.0%
AGAACCTGAAGACAAGGTTG+AGG + chr3_1:69438286-69438305 Msa0371290:CDS 45.0%
TGTTGAAGAGGAAGCAAGAG+AGG + chr3_1:69438427-69438446 Msa0371290:CDS 45.0%
GTTGAAGAGGAAGCAAGAGA+GGG + chr3_1:69438428-69438447 Msa0371290:CDS 45.0%
!! GATTCTAGAGTGACCTCATC+AGG - chr3_1:69438527-69438546 None:intergenic 45.0%
!! GAGGTCACTCTAGAATCTGA+CGG + chr3_1:69438530-69438549 Msa0371290:CDS 45.0%
AGAATCTGACGGTAATGCCT+CGG + chr3_1:69438541-69438560 Msa0371290:CDS 45.0%
CAATATCAAAGTGGCAGCAC+TGG + chr3_1:69438748-69438767 Msa0371290:CDS 45.0%
AAGGCCTTAGCAACATCAGA+AGG - chr3_1:69438800-69438819 None:intergenic 45.0%
! CTGATGTTGCTAAGGCCTTT+TGG + chr3_1:69438801-69438820 Msa0371290:CDS 45.0%
! GATGTTGCTAAGGCCTTTTG+GGG + chr3_1:69438803-69438822 Msa0371290:CDS 45.0%
! TACTTGACACCCCCAGATTT+TGG - chr3_1:69439285-69439304 None:intergenic 45.0%
TGGGATATGTAGTTTCCGTC+TGG + chr3_1:69439633-69439652 Msa0371290:intron 45.0%
ACAGCTGAATACCACGCATT+GGG - chr3_1:69439659-69439678 None:intergenic 45.0%
CTAATGGCCTCACTTGACTT+AGG + chr3_1:69439715-69439734 Msa0371290:intron 45.0%
GAAAGGATCAAAATCCCCTC+TGG - chr3_1:69439840-69439859 None:intergenic 45.0%
!! GGGGATTTTGATCCTTTCGA+CGG + chr3_1:69439842-69439861 Msa0371290:CDS 45.0%
GCAGAGCAGAGCTTATAGAA+TGG + chr3_1:69439909-69439928 Msa0371290:intron 45.0%
GGACTCTATGTTGGTGCATT+TGG + chr3_1:69439952-69439971 Msa0371290:intron 45.0%
GTTGGTGCATTTGGACCTTA+TGG + chr3_1:69439961-69439980 Msa0371290:CDS 45.0%
CGATGCTCGAGAGATTGAAA+AGG - chr3_1:69440136-69440155 None:intergenic 45.0%
GTATCCTGATGAATTGGGAG+TGG + chr3_1:69440292-69440311 Msa0371290:CDS 45.0%
TTTCCCTTGCATCATCATGC+TGG + chr3_1:69440352-69440371 Msa0371290:intron 45.0%
! TCTCTAACAATACCGACTGC+CGG - chr3_1:69440583-69440602 None:intergenic 45.0%
CAAAGTCTGCTATTCTCCCT+TGG - chr3_1:69441070-69441089 None:intergenic 45.0%
CAAGGGAGAATAGCAGACTT+TGG + chr3_1:69441068-69441087 Msa0371290:CDS 45.0%
! GTTCTTCTGTGTTTAGGGCA+TGG + chr3_1:69441252-69441271 Msa0371290:intron 45.0%
AGATCTGCTCCTTTCATGTG+TGG - chr3_1:69441280-69441299 None:intergenic 45.0%
CACATGAAAGGAGCAGATCT+TGG + chr3_1:69441280-69441299 Msa0371290:CDS 45.0%
!! GATAGTTTTACTCGACACGC+AGG + chr3_1:69441474-69441493 Msa0371290:three_prime_UTR 45.0%
! CTGTGTGCCTTCTTGTTTGT+GGG + chr3_1:69441665-69441684 Msa0371290:three_prime_UTR 45.0%
TTGATGCAGGCAGAATACCT+GGG - chr3_1:69441695-69441714 None:intergenic 45.0%
TTTGATGCAGGCAGAATACC+TGG - chr3_1:69441696-69441715 None:intergenic 45.0%
AGGTATTCTGCCTGCATCAA+AGG + chr3_1:69441695-69441714 Msa0371290:three_prime_UTR 45.0%
CTTGAGATGAGCAAACTCCA+AGG - chr3_1:69442020-69442039 None:intergenic 45.0%
GATTGTCCCCGATGTCAATT+TGG + chr3_1:69442051-69442070 Msa0371290:three_prime_UTR 45.0%
CCAAACCCAAATTGACATCG+GGG - chr3_1:69442060-69442079 None:intergenic 45.0%
GCCAAACCCAAATTGACATC+GGG - chr3_1:69442061-69442080 None:intergenic 45.0%
!!! TTTTAATTTATTTTTCTTAT+AGG + chr3_1:69435864-69435883 Msa0371290:intron 5.0%
!!! TTTAATTTATTTTTCTTATA+GGG + chr3_1:69435865-69435884 Msa0371290:intron 5.0%
!!! ATTAAAGTTTTATTTTTTAT+AGG + chr3_1:69441730-69441749 Msa0371290:three_prime_UTR 5.0%
!! ACTATAAATATTTATATATA+GGG - chr3_1:69442159-69442178 None:intergenic 5.0%
!! TACTATAAATATTTATATAT+AGG - chr3_1:69442160-69442179 None:intergenic 5.0%
TTTATTTATCGCCGTGCGCG+TGG + chr3_1:69435274-69435293 Msa0371290:CDS 50.0%
TGAAGGGGTTGTGGTTGTGT+TGG - chr3_1:69435480-69435499 None:intergenic 50.0%
AGGTGCATCGTAGAAAGTGG+GGG - chr3_1:69435589-69435608 None:intergenic 50.0%
GAGGTGCATCGTAGAAAGTG+GGG - chr3_1:69435590-69435609 None:intergenic 50.0%
! GGAGGTGCATCGTAGAAAGT+GGG - chr3_1:69435591-69435610 None:intergenic 50.0%
! TGGAGGTGCATCGTAGAAAG+TGG - chr3_1:69435592-69435611 None:intergenic 50.0%
TCCACCGAGGAATCGAACTT+GGG - chr3_1:69436015-69436034 None:intergenic 50.0%
TTCCACCGAGGAATCGAACT+TGG - chr3_1:69436016-69436035 None:intergenic 50.0%
CTAGTAATCCGGACCTTGGT+CGG - chr3_1:69436074-69436093 None:intergenic 50.0%
TGTTAACCCTCCGGTTCCTA+GGG - chr3_1:69436106-69436125 None:intergenic 50.0%
TTGTTAACCCTCCGGTTCCT+AGG - chr3_1:69436107-69436126 None:intergenic 50.0%
! ATGGTAGCGCTCATCGTCTA+TGG - chr3_1:69436628-69436647 None:intergenic 50.0%
CAGATACACTGGAAGTGGAC+TGG + chr3_1:69436665-69436684 Msa0371290:CDS 50.0%
CACACCCACACACAATTGGT+TGG + chr3_1:69437313-69437332 Msa0371290:intron 50.0%
GTATTAGTCCTGGTATGGGC+AGG + chr3_1:69437621-69437640 Msa0371290:CDS 50.0%
TTGGCTCCCCAATCACTTGA+AGG - chr3_1:69437699-69437718 None:intergenic 50.0%
AGTTGCTCACGGCATCTACT+GGG + chr3_1:69437743-69437762 Msa0371290:CDS 50.0%
GTGTATTTGCGACGAGCCAA+AGG + chr3_1:69438176-69438195 Msa0371290:CDS 50.0%
GGTGCAAGAACCTGAAGACA+AGG + chr3_1:69438280-69438299 Msa0371290:CDS 50.0%
CTCTCCTCAACCTTGTCTTC+AGG - chr3_1:69438293-69438312 None:intergenic 50.0%
!! ATCTGGGGGTGTCAAGTAAG+TGG + chr3_1:69439287-69439306 Msa0371290:intron 50.0%
GACAGCTGAATACCACGCAT+TGG - chr3_1:69439660-69439679 None:intergenic 50.0%
TGATCCTTTCGACGGTGAGT+TGG + chr3_1:69439850-69439869 Msa0371290:intron 50.0%
TAAGCCAACTCACCGTCGAA+AGG - chr3_1:69439857-69439876 None:intergenic 50.0%
GGGGATCTTAATGTTCCTGC+AGG + chr3_1:69440096-69440115 Msa0371290:CDS 50.0%
TCTTAATGTTCCTGCAGGCC+AGG + chr3_1:69440101-69440120 Msa0371290:CDS 50.0%
ATCAGGATACAGTCCACGGT+TGG - chr3_1:69440282-69440301 None:intergenic 50.0%
! GGTCCAGCATGATGATGCAA+GGG - chr3_1:69440358-69440377 None:intergenic 50.0%
! AGGTCCAGCATGATGATGCA+AGG - chr3_1:69440359-69440378 None:intergenic 50.0%
AAAGCTATTCCACCGGCAGT+CGG + chr3_1:69440568-69440587 Msa0371290:intron 50.0%
TTTGCTCGGGCACAGCATAA+AGG - chr3_1:69441309-69441328 None:intergenic 50.0%
TCTTTCTTCCCTGACGTTGG+TGG + chr3_1:69441390-69441409 Msa0371290:three_prime_UTR 50.0%
CTTTCTTCCCTGACGTTGGT+GGG + chr3_1:69441391-69441410 Msa0371290:three_prime_UTR 50.0%
!! GTTGGTGGGTTGGAGTATGA+AGG + chr3_1:69441405-69441424 Msa0371290:three_prime_UTR 50.0%
! GCTGTGTGCCTTCTTGTTTG+TGG + chr3_1:69441664-69441683 Msa0371290:three_prime_UTR 50.0%
GGGACTTCCCACAAACAAGA+AGG - chr3_1:69441675-69441694 None:intergenic 50.0%
! TCTTGTTTGTGGGAAGTCCC+AGG + chr3_1:69441675-69441694 Msa0371290:three_prime_UTR 50.0%
! TAGCTCGGTTGGTGCATTGA+GGG - chr3_1:69441832-69441851 None:intergenic 50.0%
! ATAGCTCGGTTGGTGCATTG+AGG - chr3_1:69441833-69441852 None:intergenic 50.0%
CTAGTCTCGCGTAGATAGCT+CGG - chr3_1:69441847-69441866 None:intergenic 50.0%
!! AATCACTTGAGTTGGCCTGG+TGG + chr3_1:69441981-69442000 Msa0371290:three_prime_UTR 50.0%
!! GTGGTGTTGGCTTAAGACCT+TGG + chr3_1:69442000-69442019 Msa0371290:three_prime_UTR 50.0%
! CCCCGATGTCAATTTGGGTT+TGG + chr3_1:69442057-69442076 Msa0371290:three_prime_UTR 50.0%
! TTTTCTGTTGGCCACGCGCA+CGG - chr3_1:69435288-69435307 None:intergenic 55.0%
ATCGTAGAAAGTGGGGGGTG+CGG - chr3_1:69435583-69435602 None:intergenic 55.0%
GGTGCATCGTAGAAAGTGGG+GGG - chr3_1:69435588-69435607 None:intergenic 55.0%
ACCCAAGTTCGATTCCTCGG+TGG + chr3_1:69436011-69436030 Msa0371290:intron 55.0%
GTTCGATTCCTCGGTGGAAG+TGG + chr3_1:69436017-69436036 Msa0371290:intron 55.0%
TTACCCTTCCGACCAAGGTC+CGG + chr3_1:69436063-69436082 Msa0371290:intron 55.0%
AATCCGGACCTTGGTCGGAA+GGG - chr3_1:69436069-69436088 None:intergenic 55.0%
TAATCCGGACCTTGGTCGGA+AGG - chr3_1:69436070-69436089 None:intergenic 55.0%
CGACCAAGGTCCGGATTACT+AGG + chr3_1:69436072-69436091 Msa0371290:intron 55.0%
GTTAACCCTCCGGTTCCTAG+GGG - chr3_1:69436105-69436124 None:intergenic 55.0%
CAGTTGCTCACGGCATCTAC+TGG + chr3_1:69437742-69437761 Msa0371290:CDS 55.0%
CAATGTTGAGGCGGCAACTG+AGG + chr3_1:69438331-69438350 Msa0371290:CDS 55.0%
ATACCACGCATTGGGCCAGA+CGG - chr3_1:69439651-69439670 None:intergenic 55.0%
AACCGGATTGCAAGTCCCAG+AGG + chr3_1:69439821-69439840 Msa0371290:CDS 55.0%
ACCGGATTGCAAGTCCCAGA+GGG + chr3_1:69439822-69439841 Msa0371290:CDS 55.0%
TAATGTTCCTGCAGGCCAGG+TGG + chr3_1:69440104-69440123 Msa0371290:intron 55.0%
! CTAACAATACCGACTGCCGG+TGG - chr3_1:69440580-69440599 None:intergenic 55.0%
GGCATGGGACCACACATGAA+AGG + chr3_1:69441268-69441287 Msa0371290:CDS 55.0%
ACTCCAACCCACCAACGTCA+GGG - chr3_1:69441401-69441420 None:intergenic 55.0%
TACTCCAACCCACCAACGTC+AGG - chr3_1:69441402-69441421 None:intergenic 55.0%
CTAGCGGCTTCCTTTGATGC+AGG - chr3_1:69441708-69441727 None:intergenic 55.0%
TCTCGCGTAGATAGCTCGGT+TGG - chr3_1:69441843-69441862 None:intergenic 55.0%
!! TTGAGTTGGCCTGGTGGTGT+TGG + chr3_1:69441987-69442006 Msa0371290:three_prime_UTR 55.0%
GGTCTTAAGCCAACACCACC+AGG - chr3_1:69441999-69442018 None:intergenic 55.0%
GGGCCTAGTAATCCGGACCT+TGG - chr3_1:69436078-69436097 None:intergenic 60.0%
GGGAGAGGGGCCTAGTAATC+CGG - chr3_1:69436085-69436104 None:intergenic 60.0%
TTACTAGGCCCCTCTCCCCT+AGG + chr3_1:69436087-69436106 Msa0371290:intron 60.0%
!! ATGCAGGTGGGTTGGTGGGT+AGG + chr3_1:69437557-69437576 Msa0371290:intron 60.0%
!! TGCAGGTGGGTTGGTGGGTA+GGG + chr3_1:69437558-69437577 Msa0371290:intron 60.0%
CCAACGAACCTGCCCATACC+AGG - chr3_1:69437632-69437651 None:intergenic 60.0%
CCTGGTATGGGCAGGTTCGT+TGG + chr3_1:69437629-69437648 Msa0371290:CDS 60.0%
GTTGAGGCGGCAACTGAGGA+TGG + chr3_1:69438335-69438354 Msa0371290:CDS 60.0%
TTTCCGTCTGGCCCAATGCG+TGG + chr3_1:69439645-69439664 Msa0371290:intron 60.0%
!! CCCCTCTGGGACTTGCAATC+CGG - chr3_1:69439826-69439845 None:intergenic 60.0%
CCGGATTGCAAGTCCCAGAG+GGG + chr3_1:69439823-69439842 Msa0371290:CDS 60.0%
GCATAAACCACCTGGCCTGC+AGG - chr3_1:69440114-69440133 None:intergenic 60.0%
ACAGTCCACGGTTGGCGTTG+CGG - chr3_1:69440274-69440293 None:intergenic 60.0%
! CTTCCCTGACGTTGGTGGGT+TGG + chr3_1:69441395-69441414 Msa0371290:three_prime_UTR 60.0%
CTCCGGTTCCTAGGGGAGAG+GGG - chr3_1:69436098-69436117 None:intergenic 65.0%
CCTCCGGTTCCTAGGGGAGA+GGG - chr3_1:69436099-69436118 None:intergenic 65.0%
CCTCTCCCCTAGGAACCGGA+GGG + chr3_1:69436097-69436116 Msa0371290:intron 65.0%
!! GTGGCAGCACTGGCAGCACA+AGG + chr3_1:69438758-69438777 Msa0371290:CDS 65.0%
GTCAACCGCAACGCCAACCG+TGG + chr3_1:69440266-69440285 Msa0371290:CDS 65.0%
GGCCCCTCTCCCCTAGGAAC+CGG + chr3_1:69436093-69436112 Msa0371290:intron 70.0%
CCCTCTCCCCTAGGAACCGG+AGG + chr3_1:69436096-69436115 Msa0371290:intron 70.0%
CCCTCCGGTTCCTAGGGGAG+AGG - chr3_1:69436100-69436119 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 69435266 69442254 69435266 ID=Msa0371290;Name=Msa0371290
chr3_1 mRNA 69435266 69442254 69435266 ID=Msa0371290-mRNA-1;Parent=Msa0371290;Name=Msa0371290-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.9|0.81|1|0.9|0.90|11|885|677
chr3_1 exon 69435266 69435712 69435266 ID=Msa0371290-mRNA-1:exon:14779;Parent=Msa0371290-mRNA-1
chr3_1 exon 69436443 69436532 69436443 ID=Msa0371290-mRNA-1:exon:14780;Parent=Msa0371290-mRNA-1
chr3_1 exon 69436621 69436686 69436621 ID=Msa0371290-mRNA-1:exon:14781;Parent=Msa0371290-mRNA-1
chr3_1 exon 69437563 69437669 69437563 ID=Msa0371290-mRNA-1:exon:14782;Parent=Msa0371290-mRNA-1
chr3_1 exon 69437741 69437822 69437741 ID=Msa0371290-mRNA-1:exon:14783;Parent=Msa0371290-mRNA-1
chr3_1 exon 69438173 69438847 69438173 ID=Msa0371290-mRNA-1:exon:14784;Parent=Msa0371290-mRNA-1
chr3_1 exon 69439737 69439863 69439737 ID=Msa0371290-mRNA-1:exon:14785;Parent=Msa0371290-mRNA-1
chr3_1 exon 69439953 69440122 69439953 ID=Msa0371290-mRNA-1:exon:14786;Parent=Msa0371290-mRNA-1
chr3_1 exon 69440239 69440313 69440239 ID=Msa0371290-mRNA-1:exon:14787;Parent=Msa0371290-mRNA-1
chr3_1 exon 69441050 69441142 69441050 ID=Msa0371290-mRNA-1:exon:14788;Parent=Msa0371290-mRNA-1
chr3_1 exon 69441268 69442254 69441268 ID=Msa0371290-mRNA-1:exon:14789;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69435266 69435712 69435266 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69436443 69436532 69436443 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69436621 69436686 69436621 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69437563 69437669 69437563 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69437741 69437822 69437741 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69438173 69438847 69438173 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69439737 69439863 69439737 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69439953 69440122 69439953 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69440239 69440313 69440239 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69441050 69441142 69441050 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 CDS 69441268 69441369 69441268 ID=Msa0371290-mRNA-1:cds;Parent=Msa0371290-mRNA-1
chr3_1 three_prime_UTR 69441370 69442254 69441370 ID=Msa0371290-mRNA-1:three_prime_utr;Parent=Msa0371290-mRNA-1
Gene Sequence

>Msa0371290

TTGTTTGATTTATTTATCGCCGTGCGCGTGGCCAACAGAAAACTTATCCCAAAACACAACAGCACAACAACACAGCAACCTTTTTGTCTCAATCTTCTTCAAACTTCAATTCCATTCCATCTTAATCTTTATCTTCTCCAAAACGTTGTTAGAAACAACAACCCAAACATGGTGATGGCTTCATTGGGTGTGTCCCAAGCCATCTTCTTCTCCAACACAACCACAACCCCTTCACGTTTCAATCTTCACCCTAATAAACCACCCACCTTTTCTTTTCAAAACAACCCTTCAATCTCAGTCTTTTCAAGAAGGAACCGCACCCCCCACTTTCTACGATGCACCTCCAATTCCACCAATGAAACATCGTCTCTTAACTGGGATTGGAATCGTTGGTGTCGCCATTTCGATGATATTGAACAGGCTGAAAGCTTTGCATCTCTTCTCAAGGAAGAGTTTCAAGAAGCAGCAAAGCTAAAAAGGGCTATAGTTGAAGCGACATCCAAGGATAGTGTTGCTGAAATTATGTCTCAGTTGAAGAATGCCATAGACGATGAGCGCTACCATGATGCTTCAAAATTATGCAGATACACTGGAAGTGGACTGGTGGGTTGGTGGGTAGGGTACTCAAAAAATTCAGAGGACCCTTTTGGTAGAATAATACGTATTAGTCCTGGTATGGGCAGGTTCGTTGGCAAGAGTTACAGTCCAAGACAGTTGCTCACGGCATCTACTGGGACACCATTATTTGAAATTTATGTGGTGAAAAATGCTGACGACACATATCATATGCAGGTAGTGTATTTGCGACGAGCCAAAGGAAATTCAACGAGTAACCTTCCCCCATCTTTACTTGCTAAAAGGCCATCGAAACCAGAGGTTGAGAATTTGTCTTCAGTTGAGGTGCAAGAACCTGAAGACAAGGTTGAGGAGAGAAACGATGAGAAAAACAGCAATGTTGAGGCGGCAACTGAGGATGGCATTAAAAGTGTCATAAATTTTCTTAAAGAAAAAATTCCAGGGTTGAAAGTCAAAGTTATGAACATTAATGTTGAAGAGGAAGCAAGAGAGGGTAGCGATTCTATTAAACAAATCATGGAGGAAGATGGTAATAAAACTGATGGGGAAGATGATAATCTGGATGAACCTGATGAGGTCACTCTAGAATCTGACGGTAATGCCTCGGATGAAGAAAAGGATTTAGATATGAAGCTCTTTATTGGCGGAATTGTACACAACAATGAAGATAATTCTTCTAAGGATGAATTTATACGTCTTCCAGCGGAAATAAAGAACATGGAAAGGGAATCTTTCCTCTTACATATACCTAGGAGAAATCTCGATAATGACAGGAAAGAAGATAAAGTTCGCAATATCAAAGTGGCAGCACTGGCAGCACAAGGAATCTCAGAGCTTATGCCTTCTGATGTTGCTAAGGCCTTTTGGGGTTCTGATAAAGTCTCTTCTAAGGTATCCAAAAGCATGCGTGAAATTGTCAAACTTGCTATCAGCCAAGCACAGAAAAAAAGTAGATTATCCGAAGATACATATTTTAACCGGATTGCAAGTCCCAGAGGGGATTTTGATCCTTTCGACGGACTCTATGTTGGTGCATTTGGACCTTATGGCATCGAAATAGTCCAATTGAGACGAAAATTTGGACATTGGAATGATGTGGACAGTGAAAACAGCACTTCAGATATCGAGTTTTTTGAATATGTAGAGGCAGTAAAATTGACTGGGGATCTTAATGTTCCTGCAGGCCAGGTGACATTCCGTGCTAAAATTGGTAAAGTCAACCGCAACGCCAACCGTGGACTGTATCCTGATGAATTGGGAGTGAATGCAAGTTATAAAGGCCAAGGGAGAATAGCAGACTTTGGTTTTCGAAATCCAAAATGGGTTGATGGGGAATTGCTTCAACTTAATGGCAAGGGCATGGGACCACACATGAAAGGAGCAGATCTTGGTTTCCTTTATGCTGTGCCCGAGCAAAGTTTTCTTGTGCTATTCAACCGATTGAAACTACCTGAGTAA
Protein sequence

>Msa0371290

LFDLFIAVRVANRKLIPKHNSTTTQQPFCLNLLQTSIPFHLNLYLLQNVVRNNNPNMVMASLGVSQAIFFSNTTTTPSRFNLHPNKPPTFSFQNNPSISVFSRRNRTPHFLRCTSNSTNETSSLNWDWNRWCRHFDDIEQAESFASLLKEEFQEAAKLKRAIVEATSKDSVAEIMSQLKNAIDDERYHDASKLCRYTGSGLVGWWVGYSKNSEDPFGRIIRISPGMGRFVGKSYSPRQLLTASTGTPLFEIYVVKNADDTYHMQVVYLRRAKGNSTSNLPPSLLAKRPSKPEVENLSSVEVQEPEDKVEERNDEKNSNVEAATEDGIKSVINFLKEKIPGLKVKVMNINVEEEAREGSDSIKQIMEEDGNKTDGEDDNLDEPDEVTLESDGNASDEEKDLDMKLFIGGIVHNNEDNSSKDEFIRLPAEIKNMERESFLLHIPRRNLDNDRKEDKVRNIKVAALAAQGISELMPSDVAKAFWGSDKVSSKVSKSMREIVKLAISQAQKKSRLSEDTYFNRIASPRGDFDPFDGLYVGAFGPYGIEIVQLRRKFGHWNDVDSENSTSDIEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKVNRNANRGLYPDELGVNASYKGQGRIADFGFRNPKWVDGELLQLNGKGMGPHMKGADLGFLYAVPEQSFLVLFNRLKLPE*