AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0154890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154890 MtrunA17_Chr1g0169361 93.727 829 7 1 1 829 1 784 0.0 1550
Msa0154890 MtrunA17_Chr6g0465161 34.573 726 353 16 133 829 78 710 4.46e-126 394
Msa0154890 MtrunA17_Chr4g0012061 39.096 509 256 6 132 634 100 560 5.35e-122 384
Msa0154890 MtrunA17_Chr7g0230671 34.735 642 329 11 132 753 88 659 1.79e-114 364
Msa0154890 MtrunA17_Chr3g0136721 33.929 560 293 8 178 722 129 626 1.82e-95 314
Msa0154890 MtrunA17_Chr1g0148121 35.630 508 259 8 148 645 95 544 3.52e-92 303
Msa0154890 MtrunA17_Chr1g0199921 29.588 534 299 9 126 630 132 617 7.34e-70 246
Msa0154890 MtrunA17_Chr3g0120791 32.477 428 227 8 187 603 204 580 2.74e-56 206
Msa0154890 MtrunA17_Chr8g0382921 29.978 447 230 12 187 597 198 597 1.70e-48 184
Msa0154890 MtrunA17_Chr3g0129101 29.718 461 239 12 173 597 195 606 4.93e-48 182
Msa0154890 MtrunA17_Chr5g0428451 29.615 260 166 5 187 433 128 383 1.46e-27 118
Msa0154890 MtrunA17_Chr4g0057941 27.941 272 169 8 177 430 62 324 1.37e-26 114
Msa0154890 MtrunA17_Chr3g0113361 28.622 283 161 10 174 430 76 343 1.74e-20 96.3
Msa0154890 MtrunA17_Chr4g0048521 28.514 249 154 6 195 424 229 472 2.40e-19 93.2
Msa0154890 MtrunA17_Chr1g0147481 26.730 318 196 11 142 433 80 386 1.18e-18 91.7
Msa0154890 MtrunA17_Chr5g0433911 28.000 250 149 9 198 429 77 313 1.06e-17 87.4
Msa0154890 MtrunA17_Chr8g0360981 26.423 246 166 4 187 418 210 454 1.74e-17 87.0
Msa0154890 MtrunA17_Chr2g0281061 26.423 246 166 4 187 418 218 462 7.92e-17 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154890 AT3G24190.1 76.134 838 146 5 1 829 1 793 0.0 1244
Msa0154890 AT1G79600.1 38.824 510 258 6 132 635 95 556 2.42e-119 377
Msa0154890 AT1G71810.1 33.288 736 359 18 121 829 62 692 1.69e-117 372
Msa0154890 AT5G24970.3 34.168 559 275 10 183 714 136 628 1.46e-93 309
Msa0154890 AT5G24970.2 34.168 559 275 10 183 714 175 667 1.15e-92 308
Msa0154890 AT4G31390.1 35.248 505 265 7 148 645 131 580 3.08e-92 305
Msa0154890 AT5G24970.1 33.631 559 275 11 183 714 136 625 5.19e-89 297
Msa0154890 AT4G31390.2 33.069 505 251 7 148 645 131 555 5.77e-82 276
Msa0154890 AT4G31390.3 35.616 438 220 7 217 647 1 383 1.65e-79 265
Msa0154890 AT2G39190.2 31.238 525 289 8 129 629 142 618 3.11e-74 259
Msa0154890 AT3G07700.1 31.441 458 249 9 169 613 171 576 7.44e-56 205
Msa0154890 AT3G07700.2 31.441 458 249 9 169 613 171 576 7.44e-56 205
Msa0154890 AT3G07700.4 31.441 458 249 9 169 613 171 576 7.44e-56 205
Msa0154890 AT5G64940.1 30.512 449 227 11 187 597 222 623 5.36e-47 180
Msa0154890 AT5G64940.2 30.512 449 227 11 187 597 222 623 5.36e-47 180
Msa0154890 AT3G07700.3 38.849 278 152 6 169 433 171 443 5.71e-46 176
Msa0154890 AT2G39190.1 36.564 227 137 5 129 352 142 364 6.99e-33 131
Msa0154890 AT5G05200.1 31.679 262 158 5 187 433 129 384 4.11e-29 123
Msa0154890 AT4G24810.4 27.574 272 175 7 177 430 16 283 4.39e-28 116
Msa0154890 AT4G24810.5 27.574 272 175 7 177 430 16 283 4.83e-28 115
Msa0154890 AT4G24810.6 27.636 275 177 7 177 433 16 286 4.21e-27 115
Msa0154890 AT4G24810.1 27.636 275 177 7 177 433 16 286 4.21e-27 115
Msa0154890 AT4G24810.2 27.636 275 177 7 177 433 59 329 7.94e-27 115
Msa0154890 AT4G24810.3 27.305 282 176 8 177 433 16 293 1.61e-25 111
Msa0154890 AT1G65950.2 32.222 270 160 11 174 429 89 349 8.87e-25 108
Msa0154890 AT1G65950.1 32.222 270 160 11 174 429 89 349 2.11e-24 108
Msa0154890 AT5G50330.1 25.993 277 179 6 177 433 59 329 8.49e-24 106
Msa0154890 AT5G24810.1 29.197 274 157 9 184 432 98 359 1.17e-18 92.0
Msa0154890 AT1G61640.3 28.400 250 150 9 195 423 221 462 1.20e-18 91.3
Msa0154890 AT1G61640.1 27.309 249 154 7 195 423 221 462 1.85e-18 90.5
Msa0154890 AT5G50330.2 23.827 277 169 7 177 433 59 313 3.95e-18 88.6
Msa0154890 AT2G40090.1 29.885 261 166 9 175 422 79 335 7.59e-18 88.2
Msa0154890 AT1G11390.1 26.891 238 159 4 195 418 224 460 1.25e-17 87.8
Msa0154890 AT4G01660.1 28.346 254 144 9 197 430 238 473 9.40e-14 75.5
Msa0154890 AT1G61640.2 26.442 208 134 7 195 389 221 422 3.01e-11 67.0

Find 246 sgRNAs with CRISPR-Local

Find 599 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACTTTGCCCTTATAATT+AGG 0.089687 1_4:+19696803 Msa0154890:CDS
GCTTTACGTTACACTATATA+TGG 0.194317 1_4:+19697550 Msa0154890:CDS
TCAAGAACTCCAGCACTTTC+TGG 0.201641 1_4:-19698765 None:intergenic
AGCTAGTATTACTGCATATT+GGG 0.247428 1_4:+19690828 Msa0154890:CDS
CCCCGATAGCCCTAATTATA+AGG 0.248780 1_4:-19696813 None:intergenic
ATCCTCTCCACCTCCACTTT+TGG 0.254419 1_4:-19697644 None:intergenic
ATACTTTGCCCTTATAATTA+GGG 0.262467 1_4:+19696804 Msa0154890:CDS
ATCTCTCGGACAGGTATATA+AGG 0.270512 1_4:+19692753 Msa0154890:CDS
GATTAATGAACAAGGGTAAA+TGG 0.271358 1_4:-19699199 None:intergenic
AAACCTGTCAACGGTGTCTC+TGG 0.278838 1_4:+19689983 Msa0154890:CDS
AATTAGGGCTATCGGGGTTC+TGG 0.286988 1_4:+19696819 Msa0154890:CDS
AAGGGCCGCCTGAAGGAAAA+TGG 0.288141 1_4:+19692772 Msa0154890:CDS
TATATTATATTTATATATAC+TGG 0.288472 1_4:-19699175 None:intergenic
AATAGCCAGCATAATTGATT+TGG 0.293002 1_4:-19699277 None:intergenic
GTAGGTACCATACCGAAAAT+AGG 0.294048 1_4:-19698670 None:intergenic
CAGCTAGTATTACTGCATAT+TGG 0.297042 1_4:+19690827 Msa0154890:CDS
AATTATACCTGTGCAATATA+TGG 0.302271 1_4:-19696895 None:intergenic
ACGTGAAATTGTGACATCTT+TGG 0.305343 1_4:+19691927 Msa0154890:CDS
AGAACTTCTGCCAGTGTTGC+CGG 0.306484 1_4:+19698994 Msa0154890:CDS
GGTTGTTGTGGCGGTGGGAA+TGG 0.314697 1_4:-19689853 None:intergenic
GTATACTTGCTGTAAGTTCT+TGG 0.331390 1_4:-19694342 None:intergenic
CCCTTATAATTAGGGCTATC+GGG 0.332300 1_4:+19696812 Msa0154890:CDS
CGTGAAATTGTGACATCTTT+GGG 0.332945 1_4:+19691928 Msa0154890:CDS
TTTATTTGCATTCAGAGAAT+TGG 0.338434 1_4:+19690083 Msa0154890:intron
GTTGTTGTGGCGGTGGGAAT+GGG 0.338778 1_4:-19689852 None:intergenic
TTGACCGATGATCAAAAGTA+TGG 0.343269 1_4:+19696550 Msa0154890:CDS
GGATCTAAATTGACTCCATC+TGG 0.344181 1_4:-19696652 None:intergenic
TTATTTCAGCTGCTTGATAC+TGG 0.344397 1_4:+19695219 Msa0154890:intron
CATCATTTATCACAATGATT+AGG 0.344636 1_4:-19696492 None:intergenic
TTCTTAGCAGATTATCTTCT+CGG 0.345784 1_4:+19699044 Msa0154890:CDS
AACTTTATCCTCTTCAGTTA+TGG 0.348424 1_4:-19698728 None:intergenic
CTAATTATAAGGGCAAAGTA+TGG 0.349214 1_4:-19696802 None:intergenic
TTTAACGAAGTCTTTCACTA+TGG 0.351984 1_4:-19696617 None:intergenic
CCTGAAGGAAAATGGGGATT+TGG 0.353495 1_4:+19692780 Msa0154890:CDS
GTCTTTGACCAGGCTTTAGA+AGG 0.356423 1_4:+19696697 Msa0154890:CDS
TGTGGGTGGATTAAGCATTA+AGG 0.366442 1_4:-19699116 None:intergenic
GCCCTTATAATTAGGGCTAT+CGG 0.378622 1_4:+19696811 Msa0154890:CDS
CAGGTCTTTCTTCATCATTT+CGG 0.380540 1_4:-19693155 None:intergenic
CCGGTCAGAATATCTCTTGC+CGG 0.382765 1_4:+19697705 Msa0154890:CDS
TACACTATATATGGGAAATC+TGG 0.386187 1_4:+19697559 Msa0154890:CDS
GCAACACTGGCAGAAGTTCT+TGG 0.389343 1_4:-19698991 None:intergenic
AGGTCTCCATTGACGTGGTT+GGG 0.391236 1_4:+19693056 Msa0154890:intron
ACGAAGTCTTTCACTATGGC+TGG 0.396425 1_4:-19696613 None:intergenic
GTGCAGTTATTATCTGTTGC+TGG 0.398582 1_4:+19690883 Msa0154890:CDS
CCATTGATTTATTTATTATC+CGG 0.406043 1_4:+19692845 Msa0154890:CDS
TTTGCAAGCACTGGCAAGAT+AGG 0.409252 1_4:-19696673 None:intergenic
TATTATCCGGAACCTTGGTT+TGG 0.410620 1_4:+19692858 Msa0154890:CDS
GAGGGAGGTTGTTGTGGCGG+TGG 0.410846 1_4:-19689859 None:intergenic
AGAGACACCGTTGACAGGTT+TGG 0.413955 1_4:-19689981 None:intergenic
TATGTGAATGAAGGTGAAAA+TGG 0.419960 1_4:+19693121 Msa0154890:CDS
CCGTCAACGGTTCTTCTTCA+AGG 0.422670 1_4:+19689948 Msa0154890:CDS
TAAGAGAGTGAGAGCGCAAA+TGG 0.424054 1_4:+19690124 Msa0154890:CDS
TAGGTCTCCATTGACGTGGT+TGG 0.426485 1_4:+19693055 Msa0154890:intron
TGTGGCTAGATATTGTTCAT+TGG 0.429903 1_4:+19696392 Msa0154890:intron
CCCCTCCACCTTCTAAAGCC+TGG 0.432654 1_4:-19696705 None:intergenic
AGCTTGGGCTTATTACTAAC+CGG 0.433633 1_4:+19697686 Msa0154890:CDS
TGGAAAGCTACCGGCGGCAA+TGG 0.437249 1_4:-19692622 None:intergenic
GGTCCAGCATACATAAAACT+TGG 0.438925 1_4:+19691949 Msa0154890:CDS
GGCTCTTCGAAAATTTCCTC+AGG 0.440365 1_4:+19692879 Msa0154890:CDS
CTGGAAGGGATAGCTTTAGT+AGG 0.442898 1_4:+19696838 Msa0154890:CDS
GATAATCTGCTAAGAACATC+AGG 0.444598 1_4:-19699037 None:intergenic
GCCCGTGTTTCCACTGGCTG+CGG 0.444691 1_4:-19697754 None:intergenic
ATGAAGTTGATCAAGACAAC+TGG 0.444768 1_4:-19696421 None:intergenic
GTAGTGACAGGAGCAGGTTT+AGG 0.446333 1_4:-19689926 None:intergenic
TCATCAACAATGGCAAAATC+AGG 0.448007 1_4:-19696865 None:intergenic
AGAGGATCTGAAAGGGAGTA+TGG 0.453042 1_4:+19697660 Msa0154890:CDS
GCTGCAGGTGACAGTATATC+AGG 0.453190 1_4:-19691991 None:intergenic
AATGGAAGAAGATGAACAAT+TGG 0.455274 1_4:+19690142 Msa0154890:CDS
AAACTTGCAATACTTGACTT+TGG 0.456974 1_4:+19695294 Msa0154890:CDS
GAAGAGCCAAACCAAGGTTC+CGG 0.457788 1_4:-19692864 None:intergenic
CCCGATAGCCCTAATTATAA+GGG 0.458006 1_4:-19696812 None:intergenic
TTCTCGGGTTGCGTGGGATG+TGG 0.458420 1_4:+19690915 Msa0154890:CDS
GAGGTGGAGAGGATCTGAAA+GGG 0.458984 1_4:+19697653 Msa0154890:CDS
TGCAACTCTGTCATTGCTGC+AGG 0.460173 1_4:-19692006 None:intergenic
ATAACCAGAATGAGGTTGCC+AGG 0.461543 1_4:+19691893 Msa0154890:intron
TCTGTCAAGCACATCTAGTC+AGG 0.463598 1_4:+19698801 Msa0154890:CDS
ATTGTGTATATTTGACAGAA+TGG 0.465438 1_4:+19699139 Msa0154890:three_prime_UTR
AGGGAGGTTGTTGTGGCGGT+GGG 0.465926 1_4:-19689858 None:intergenic
CTTTACGTTACACTATATAT+GGG 0.466517 1_4:+19697551 Msa0154890:CDS
AGTTATCTGCTACCTAAAAC+AGG 0.467699 1_4:+19694455 Msa0154890:CDS
GTCGGAGAATTAGTTAATGT+TGG 0.469559 1_4:+19694432 Msa0154890:CDS
ATTTGCAGATGATGTGGCTA+TGG 0.471517 1_4:+19692536 Msa0154890:CDS
AGGGCTGCCCGTGTTTCCAC+TGG 0.474496 1_4:-19697760 None:intergenic
GTGAAAGACTTCGTTAAACT+TGG 0.475881 1_4:+19696622 Msa0154890:CDS
TAAAAGAAATTAAACATTAG+TGG 0.477443 1_4:-19696460 None:intergenic
TATTTATATATACTGGTATG+TGG 0.478038 1_4:-19699168 None:intergenic
TTCGGTATGGTACCTACCAT+TGG 0.478269 1_4:+19698676 Msa0154890:CDS
CTCCATTGACGTGGTTGGGT+TGG 0.481448 1_4:+19693060 Msa0154890:CDS
AGGGCCGCCTGAAGGAAAAT+GGG 0.482279 1_4:+19692773 Msa0154890:CDS
AACCAACCCAACCACGTCAA+TGG 0.482943 1_4:-19693062 None:intergenic
GTAACTGTCTCGAGAACAAA+AGG 0.487145 1_4:-19692823 None:intergenic
AACCTGTCAACGGTGTCTCT+GGG 0.487214 1_4:+19689984 Msa0154890:CDS
ACACCGTTGACAGGTTTGGC+AGG 0.488797 1_4:-19689977 None:intergenic
CGATTCCGCGGTAGATGAGT+TGG 0.493275 1_4:-19689811 None:intergenic
CCGGATAATAAATAAATCAA+TGG 0.496216 1_4:-19692845 None:intergenic
TTTATTACAGCTGCCAAAAG+TGG 0.497079 1_4:+19697631 Msa0154890:CDS
GACCAGGCTTTAGAAGGTGG+AGG 0.497384 1_4:+19696703 Msa0154890:CDS
TGCATTCTGAACTCCTAGTA+AGG 0.499806 1_4:-19698644 None:intergenic
GTAAGAATTATGTCCTTACT+AGG 0.500477 1_4:+19698631 Msa0154890:CDS
AAAGGGAGTATGGCTGAGCT+TGG 0.501167 1_4:+19697670 Msa0154890:CDS
TAGGTACCATACCGAAAATA+GGG 0.501824 1_4:-19698669 None:intergenic
GGTTGGGTTGGTTGACGAGT+GGG 0.502534 1_4:+19693072 Msa0154890:CDS
TCTTAGCAGATTATCTTCTC+GGG 0.503708 1_4:+19699045 Msa0154890:CDS
TAATTATAAGGGCAAAGTAT+GGG 0.504028 1_4:-19696801 None:intergenic
GCAGAAATGCCCGGCAACAC+TGG 0.505198 1_4:-19699004 None:intergenic
CGGTCAGAATATCTCTTGCC+GGG 0.507660 1_4:+19697706 Msa0154890:CDS
TTTATCCTCTTCAGTTATGG+TGG 0.508378 1_4:-19698725 None:intergenic
GGAAAGCTACCGGCGGCAAT+GGG 0.509268 1_4:-19692621 None:intergenic
TTATTTATTATCCGGAACCT+TGG 0.509898 1_4:+19692853 Msa0154890:CDS
GTGCTGGAGTTCTTGACTGC+AGG 0.510421 1_4:+19698772 Msa0154890:CDS
GGAGGGTTCTTACAACAGAA+TGG 0.511423 1_4:+19694370 Msa0154890:CDS
CTAATCATTGTGATAAATGA+TGG 0.511611 1_4:+19696493 Msa0154890:CDS
GGAGGTGGAGAGGATCTGAA+AGG 0.512007 1_4:+19697652 Msa0154890:CDS
TTCACGTATTTCAATAGCCC+TGG 0.512127 1_4:-19691911 None:intergenic
CCTTGAAGAAGAACCGTTGA+CGG 0.513312 1_4:-19689948 None:intergenic
TGCTGTGACAAGGGAACAAA+TGG 0.515122 1_4:+19698609 Msa0154890:CDS
AACCGCAGCCAGTGGAAACA+CGG 0.515912 1_4:+19697752 Msa0154890:CDS
ATAAGCCAAATCAATTATGC+TGG 0.516259 1_4:+19699272 Msa0154890:three_prime_UTR
CAATATGCAGTAATACTAGC+TGG 0.516377 1_4:-19690826 None:intergenic
ATTAAACATTAGTGGCGTCC+AGG 0.516804 1_4:-19696452 None:intergenic
AATATGATCCGCACTCCTGA+TGG 0.516841 1_4:+19695270 Msa0154890:CDS
TGTCAAATATACACAATTGT+GGG 0.517727 1_4:-19699133 None:intergenic
GCTCTAATTGAAGAGGAACT+TGG 0.518860 1_4:+19692558 Msa0154890:CDS
TTACTGATAGAGACTCTTGA+CGG 0.519048 1_4:+19697504 Msa0154890:intron
GAACTTCTGCCAGTGTTGCC+GGG 0.520134 1_4:+19698995 Msa0154890:CDS
CGGTGGCGACAGCGGAGATA+CGG 0.520949 1_4:-19689901 None:intergenic
CTGTCAAATATACACAATTG+TGG 0.521036 1_4:-19699134 None:intergenic
GCTTGCAAAGGTCTTTGACC+AGG 0.523145 1_4:+19696687 Msa0154890:CDS
ACCCCAGAGACACCGTTGAC+AGG 0.523907 1_4:-19689986 None:intergenic
TCAAAGACCTTTGCAAGCAC+TGG 0.524525 1_4:-19696682 None:intergenic
AGGGCTATCGGGGTTCTGGA+AGG 0.528388 1_4:+19696823 Msa0154890:CDS
TCTCTCGGACAGGTATATAA+GGG 0.528745 1_4:+19692754 Msa0154890:CDS
GACGGAGAGGGAGGTTGTTG+TGG 0.530054 1_4:-19689865 None:intergenic
TCCTTCATTTGCAGATGATG+TGG 0.531156 1_4:+19692530 Msa0154890:CDS
TTGACGGTAGTGACAGGAGC+AGG 0.531550 1_4:-19689932 None:intergenic
GATGTTACAGACTGGAATCC+CGG 0.531571 1_4:-19697724 None:intergenic
CGGATGAATCCCCTCGGCTA+AGG 0.532282 1_4:+19697524 Msa0154890:CDS
TTTGACCAGGCTTTAGAAGG+TGG 0.532307 1_4:+19696700 Msa0154890:CDS
AATTGCTCATCTCATCCATC+GGG 0.532594 1_4:+19696585 Msa0154890:CDS
TTATTGGACTCACCTGTGGC+AGG 0.532624 1_4:-19693174 None:intergenic
TTTCATGCTGATCCTCACCC+GGG 0.534686 1_4:+19695246 Msa0154890:CDS
ACCAGGCTTTAGAAGGTGGA+GGG 0.538065 1_4:+19696704 Msa0154890:CDS
GATTCCGCGGTAGATGAGTT+GGG 0.538602 1_4:-19689810 None:intergenic
GTGGGATGTGGTTAACAAGA+AGG 0.539335 1_4:+19690927 Msa0154890:CDS
GAGAATTGGTGATGTTTCGA+AGG 0.539608 1_4:+19690097 Msa0154890:intron
GCTACCGGCGGCAATGGGAG+AGG 0.540075 1_4:-19692616 None:intergenic
CCTCGTCCAAAAGAAATTCA+CGG 0.540680 1_4:-19697816 None:intergenic
AAACTTGGTTTCATCCCAGA+TGG 0.540981 1_4:+19696637 Msa0154890:CDS
GCCACATCATCTGCAAATGA+AGG 0.542980 1_4:-19692531 None:intergenic
GAATGGGACGAGCGGAGTAA+AGG 0.543025 1_4:-19689836 None:intergenic
AAGGGAGTATGGCTGAGCTT+GGG 0.543384 1_4:+19697671 Msa0154890:CDS
TTATCCTCTTCAGTTATGGT+GGG 0.547564 1_4:-19698724 None:intergenic
CCGCCTGCCAAACCTGTCAA+CGG 0.550645 1_4:+19689974 Msa0154890:CDS
TGGTTGGGTTGGTTGACGAG+TGG 0.551378 1_4:+19693071 Msa0154890:CDS
TCTTCATCATTTCGGCGAAG+CGG 0.553476 1_4:-19693147 None:intergenic
GGGCTATCGGGGTTCTGGAA+GGG 0.553995 1_4:+19696824 Msa0154890:CDS
ATATGCAGCATCTCTCGGAC+AGG 0.554501 1_4:+19692744 Msa0154890:intron
AAGTAGTGAATTTCTACCAT+TGG 0.554621 1_4:+19690795 Msa0154890:CDS
GAACCGTTGACGGTAGTGAC+AGG 0.554849 1_4:-19689938 None:intergenic
CAATTGCTCATCTCATCCAT+CGG 0.555375 1_4:+19696584 Msa0154890:CDS
AATTATAAGGGCAAAGTATG+GGG 0.557155 1_4:-19696800 None:intergenic
ACAACCTCCCTCTCCGTCGC+CGG 0.558871 1_4:+19689870 Msa0154890:CDS
GGTATATAAGGGCCGCCTGA+AGG 0.559240 1_4:+19692765 Msa0154890:CDS
CAGAGCAAAGAAAGCAATGT+CGG 0.560609 1_4:+19694414 Msa0154890:CDS
GGGCATTGATGCTGTGACAA+GGG 0.561217 1_4:+19698600 Msa0154890:CDS
ACCGCAGCCAGTGGAAACAC+GGG 0.564302 1_4:+19697753 Msa0154890:CDS
GGTTAACAAGAAGGTTAAAG+AGG 0.566410 1_4:+19690936 Msa0154890:CDS
ATGCGAGTTGCAACGGAGCG+AGG 0.567245 1_4:-19690859 None:intergenic
CTGCACAATGCGAGTTGCAA+CGG 0.568797 1_4:-19690866 None:intergenic
CGGATCATATTCCCCGGGTG+AGG 0.570070 1_4:-19695258 None:intergenic
TAATGATTCGCTCTTTGCTG+AGG 0.570101 1_4:+19690199 Msa0154890:CDS
ACAGCTGCCAAAAGTGGAGG+TGG 0.572452 1_4:+19697637 Msa0154890:CDS
AACGCCGGCGACGGAGAGGG+AGG 0.573158 1_4:-19689874 None:intergenic
AAGAGGAACTTGGTCAGCCA+TGG 0.574058 1_4:+19692568 Msa0154890:CDS
GAAACATATGCAGCATCTCT+CGG 0.574141 1_4:+19692739 Msa0154890:intron
CCTTATAATTAGGGCTATCG+GGG 0.576502 1_4:+19696813 Msa0154890:CDS
GAACAATGTCCAGAAAGTGC+TGG 0.577732 1_4:+19698756 Msa0154890:CDS
AGCCTATCCATATATTGCAC+AGG 0.579392 1_4:+19696888 Msa0154890:CDS
TGCCAAAAGTGGAGGTGGAG+AGG 0.579882 1_4:+19697642 Msa0154890:CDS
TAGAACGCCGGCGACGGAGA+GGG 0.580222 1_4:-19689877 None:intergenic
GGAGTGCGGATCATATTCCC+CGG 0.581565 1_4:-19695264 None:intergenic
CCGTTGACAGGTTTGGCAGG+CGG 0.583407 1_4:-19689974 None:intergenic
TACGGTTAGAACGCCGGCGA+CGG 0.585185 1_4:-19689883 None:intergenic
CTTACAACAGAATGGATTGA+CGG 0.585861 1_4:+19694378 Msa0154890:CDS
TATACCCACCATAACTGAAG+AGG 0.586389 1_4:+19698720 Msa0154890:CDS
ATTACAGCTGCCAAAAGTGG+AGG 0.587817 1_4:+19697634 Msa0154890:CDS
GATCTAAATTGACTCCATCT+GGG 0.588365 1_4:-19696651 None:intergenic
GTAAAGCACTCCTTAGCCGA+GGG 0.589316 1_4:-19697534 None:intergenic
GCTCCTGTCACTACCGTCAA+CGG 0.591944 1_4:+19689935 Msa0154890:CDS
CCAGGCTTTAGAAGGTGGAG+GGG 0.593525 1_4:+19696705 Msa0154890:CDS
ATGGTGGGTATAAGAGCTGC+GGG 0.595967 1_4:-19698709 None:intergenic
GATTGACTGCAGATTGTCAA+GGG 0.597608 1_4:+19698580 Msa0154890:intron
AGGGCATTGATGCTGTGACA+AGG 0.597768 1_4:+19698599 Msa0154890:CDS
GCTATAATGATTAATGAACA+AGG 0.600527 1_4:-19699207 None:intergenic
GGCTATGGCTCTAATTGAAG+AGG 0.600972 1_4:+19692551 Msa0154890:CDS
TATCCTAAAAGGATAATCAA+AGG 0.601605 1_4:-19696776 None:intergenic
CCGGCAAGAGATATTCTGAC+CGG 0.601734 1_4:-19697705 None:intergenic
TCAACCTCTCCCATTGCCGC+CGG 0.601960 1_4:+19692612 Msa0154890:CDS
ATCTCAACAACCGCAGCCAG+TGG 0.604477 1_4:+19697744 Msa0154890:CDS
GGCGGTGGGAATGGGACGAG+CGG 0.606626 1_4:-19689844 None:intergenic
CGGAGATACGGTTAGAACGC+CGG 0.607587 1_4:-19689889 None:intergenic
GGAGAGGGAGGTTGTTGTGG+CGG 0.608879 1_4:-19689862 None:intergenic
TACCTGTGCAATATATGGAT+AGG 0.609388 1_4:-19696890 None:intergenic
TAACCAGAATGAGGTTGCCA+GGG 0.609399 1_4:+19691894 Msa0154890:intron
TGTTCAACTACGACTTGTTG+AGG 0.609466 1_4:+19690226 Msa0154890:CDS
TGGATAGGCTTCATCAACAA+TGG 0.610971 1_4:-19696875 None:intergenic
CTATGGCTGGATAATCCCGA+TGG 0.613934 1_4:-19696600 None:intergenic
GCTAGTATTACTGCATATTG+GGG 0.615592 1_4:+19690829 Msa0154890:CDS
TGCGGGCTTGAAGCGTCCAA+TGG 0.615861 1_4:-19698692 None:intergenic
CAGTTATTATCTGTTGCTGG+AGG 0.617050 1_4:+19690886 Msa0154890:CDS
TGATTGACTGCAGATTGTCA+AGG 0.617529 1_4:+19698579 Msa0154890:intron
TATCTTGCCAGTGCTTGCAA+AGG 0.619857 1_4:+19696675 Msa0154890:CDS
AGCACTTTAGCAGAAATGCC+CGG 0.620084 1_4:-19699013 None:intergenic
GAGTTAGACTATGTGAATGA+AGG 0.620549 1_4:+19693112 Msa0154890:CDS
TTTAGGATCGGTGGCGACAG+CGG 0.620973 1_4:-19689909 None:intergenic
AGGAGCAGGTTTAGGATCGG+TGG 0.621321 1_4:-19689918 None:intergenic
TATCACAATGATTAGGACAG+TGG 0.622230 1_4:-19696485 None:intergenic
GGCTTGAAGCGTCCAATGGT+AGG 0.622742 1_4:-19698688 None:intergenic
GACAGGAGCAGGTTTAGGAT+CGG 0.623701 1_4:-19689921 None:intergenic
GTCCAGCATACATAAAACTT+GGG 0.627157 1_4:+19691950 Msa0154890:CDS
CAAATATACACAATTGTGGG+TGG 0.628614 1_4:-19699130 None:intergenic
TATGGTGGGTATAAGAGCTG+CGG 0.631457 1_4:-19698710 None:intergenic
ACCTGTCAACGGTGTCTCTG+GGG 0.632413 1_4:+19689985 Msa0154890:CDS
CTTACAGCAAGTATACATCA+AGG 0.633014 1_4:+19694349 Msa0154890:CDS
CGTAAAGCACTCCTTAGCCG+AGG 0.633199 1_4:-19697535 None:intergenic
GTTGTTGAGATGTTACAGAC+TGG 0.636049 1_4:-19697732 None:intergenic
AGAAGTTCTTGGATAATCTG+AGG 0.636314 1_4:-19698980 None:intergenic
AGTCTTATGAGAGGTCTTCG+TGG 0.637623 1_4:+19690167 Msa0154890:CDS
GAGTAAACAGCATTCCACAA+TGG 0.640499 1_4:+19689775 Msa0154890:exon
GAGTGCGGATCATATTCCCC+GGG 0.640776 1_4:-19695263 None:intergenic
TTAGAACGCCGGCGACGGAG+AGG 0.642104 1_4:-19689878 None:intergenic
GATGAAGAAAGACCTGCCAC+AGG 0.643598 1_4:+19693162 Msa0154890:CDS
CTATAATGATTAATGAACAA+GGG 0.644603 1_4:-19699206 None:intergenic
GGATGATGCTGTATCCATTG+TGG 0.645105 1_4:-19689789 None:intergenic
CTAGCTGGATCATACACCAA+TGG 0.649269 1_4:-19690811 None:intergenic
TCTTGACGGATGAATCCCCT+CGG 0.651670 1_4:+19697518 Msa0154890:CDS
AGCTGTAATAAAATTCTCGA+AGG 0.654599 1_4:-19697620 None:intergenic
CAGCAAGTATACATCAAGGA+GGG 0.655370 1_4:+19694353 Msa0154890:CDS
ATTATAAGGGCAAAGTATGG+GGG 0.655388 1_4:-19696799 None:intergenic
GGGCCGCCTGAAGGAAAATG+GGG 0.676507 1_4:+19692774 Msa0154890:CDS
TTCATGCTGATCCTCACCCG+GGG 0.678599 1_4:+19695247 Msa0154890:CDS
GGAGTAAAGGATCGATTCCG+CGG 0.682638 1_4:-19689823 None:intergenic
CAATTGGCAAGTCTTATGAG+AGG 0.695083 1_4:+19690158 Msa0154890:CDS
ACAGCAAGTATACATCAAGG+AGG 0.696808 1_4:+19694352 Msa0154890:CDS
TCATCCCAACTCATCTACCG+CGG 0.706405 1_4:+19689806 Msa0154890:CDS
TAAAGCACTCCTTAGCCGAG+GGG 0.715422 1_4:-19697533 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATAATTATTATAA+TGG - chr1_4:19694269-19694288 None:intergenic 0.0%
!!! AATATTTATTCAATGAATTT+TGG - chr1_4:19690585-19690604 None:intergenic 10.0%
!! ATAAATATTTAGATATTAGT+CGG + chr1_4:19691405-19691424 Msa0154890:intron 10.0%
!! CAAACTAATAAATATAATTA+AGG + chr1_4:19693837-19693856 Msa0154890:intron 10.0%
!!! TGGTTTATTTTTAATTTTTT+TGG + chr1_4:19693955-19693974 Msa0154890:intron 10.0%
!!! ATTTTTTTTTTAAATAGTGT+AGG + chr1_4:19695128-19695147 Msa0154890:intron 10.0%
!!! TTTTTTTTTTAAATAGTGTA+GGG + chr1_4:19695129-19695148 Msa0154890:intron 10.0%
!! AAAAAAAACATAATGATATA+CGG - chr1_4:19695621-19695640 None:intergenic 10.0%
!!! ATCCATATTTTTTAATTTTA+CGG - chr1_4:19696103-19696122 None:intergenic 10.0%
!! AAAAAATTATAACTATGATA+TGG - chr1_4:19696303-19696322 None:intergenic 10.0%
!! GAAAAAAATAGAAATATCAT+AGG - chr1_4:19690636-19690655 None:intergenic 15.0%
!!! ATTTTAATTTCTTGCATATT+TGG + chr1_4:19691511-19691530 Msa0154890:intron 15.0%
!! ATAAGTTTCAATTATCTAAA+AGG - chr1_4:19691829-19691848 None:intergenic 15.0%
!! CAATATAGATTCATTTAAAA+AGG - chr1_4:19692108-19692127 None:intergenic 15.0%
!! AAGAAAGTAATATATCAAAA+TGG - chr1_4:19692650-19692669 None:intergenic 15.0%
!! CATAAGAAATAAGAAATTAT+TGG - chr1_4:19693193-19693212 None:intergenic 15.0%
!!! ATGTTAAGTTTTTTCATAAT+AGG + chr1_4:19693601-19693620 Msa0154890:intron 15.0%
!!! TATTAGTTTGTTTCTAAAAT+AGG - chr1_4:19693827-19693846 None:intergenic 15.0%
!! ACTAATAAATATAATTAAGG+AGG + chr1_4:19693840-19693859 Msa0154890:intron 15.0%
!!! AATAATAAATTACCTGTTTT+AGG - chr1_4:19694470-19694489 None:intergenic 15.0%
!!! AAAATAATTTTGACAATTTC+AGG + chr1_4:19695067-19695086 Msa0154890:intron 15.0%
!!! AAATAATTTTGACAATTTCA+GGG + chr1_4:19695068-19695087 Msa0154890:intron 15.0%
!! GTTTATAAAGAATTTACTTA+AGG - chr1_4:19695173-19695192 None:intergenic 15.0%
!! TACCGTAAAATTAAAAAATA+TGG + chr1_4:19696098-19696117 Msa0154890:intron 15.0%
!! TATACATTGTAAAACAAAAT+TGG + chr1_4:19696155-19696174 Msa0154890:intron 15.0%
!! AAAATGAAGTTAAAAGAAAA+CGG - chr1_4:19696258-19696277 None:intergenic 15.0%
!! TAAAAGAAATTAAACATTAG+TGG - chr1_4:19696463-19696482 None:intergenic 15.0%
!! AGTATAATAACTAAATTACT+TGG - chr1_4:19697898-19697917 None:intergenic 15.0%
!!! GTGTATTTTTTCAATTTTGT+AGG + chr1_4:19690765-19690784 Msa0154890:intron 20.0%
!!! GATAAATTTGTTTTGATTTG+AGG + chr1_4:19691285-19691304 Msa0154890:intron 20.0%
!! AATCTATATTGTCATACATA+GGG + chr1_4:19692117-19692136 Msa0154890:intron 20.0%
!!! AAGTTATTAACTTTTTTCTC+TGG - chr1_4:19692154-19692173 None:intergenic 20.0%
!! GTTAATAACTTGATATTAGT+TGG + chr1_4:19692163-19692182 Msa0154890:intron 20.0%
!!! CCATTGATTTATTTATTATC+CGG + chr1_4:19692845-19692864 Msa0154890:CDS 20.0%
!!! TGCTTTTTACCTAATTTTTT+AGG + chr1_4:19693036-19693055 Msa0154890:intron 20.0%
!! ATTATAAAAATTGTCATGAG+AGG + chr1_4:19694277-19694296 Msa0154890:intron 20.0%
!! ATTTCAATTTATACAGCTTA+GGG + chr1_4:19694563-19694582 Msa0154890:intron 20.0%
!!! TACATAAATTTTTGAAACAC+AGG - chr1_4:19694658-19694677 None:intergenic 20.0%
!! TGTGTTTCAAAAATTTATGT+AGG + chr1_4:19694657-19694676 Msa0154890:intron 20.0%
!! GTGTTTCAAAAATTTATGTA+GGG + chr1_4:19694658-19694677 Msa0154890:intron 20.0%
!! TGTTTCAAAAATTTATGTAG+GGG + chr1_4:19694659-19694678 Msa0154890:intron 20.0%
!! AATACTAATGATTATACAAC+AGG - chr1_4:19694697-19694716 None:intergenic 20.0%
!! ATAATCTATCTAAATTACCA+GGG - chr1_4:19694827-19694846 None:intergenic 20.0%
!! TATAATCTATCTAAATTACC+AGG - chr1_4:19694828-19694847 None:intergenic 20.0%
!! AAATGTCTCTAAATAAGTAA+TGG - chr1_4:19694858-19694877 None:intergenic 20.0%
!!! AATTTCATAATGTCTTATTG+AGG - chr1_4:19695427-19695446 None:intergenic 20.0%
!!! TTCTGGTATTTAAAATCTAA+TGG - chr1_4:19695716-19695735 None:intergenic 20.0%
!! TCTTAAAGATTCTTTGTATA+TGG + chr1_4:19695813-19695832 Msa0154890:intron 20.0%
!!! TAATTTCTTTTTACTTGCAA+AGG - chr1_4:19695904-19695923 None:intergenic 20.0%
!!! TGTTTTATTATTTGCAATTG+TGG + chr1_4:19696374-19696393 Msa0154890:intron 20.0%
!! TTCATCAATTTCAAAAACAT+TGG - chr1_4:19697041-19697060 None:intergenic 20.0%
!!! TGATGTAGATATAACAATTT+TGG + chr1_4:19697231-19697250 Msa0154890:intron 20.0%
!! TAGCATAAAAATATGATTGT+AGG - chr1_4:19698037-19698056 None:intergenic 20.0%
!! CTAAAATTGAATAAATCAGT+TGG + chr1_4:19698293-19698312 Msa0154890:intron 20.0%
!!! TGATTTATTTTAGCTTAACA+AGG + chr1_4:19698903-19698922 Msa0154890:intron 20.0%
!! TTATTTATCTATTTGTCTGT+GGG + chr1_4:19698936-19698955 Msa0154890:intron 20.0%
!!! TTTTTTACAAAAATGCATCA+CGG - chr1_4:19699087-19699106 None:intergenic 20.0%
!! TATTTATATATACTGGTATG+TGG - chr1_4:19699171-19699190 None:intergenic 20.0%
!! CTATAATGATTAATGAACAA+GGG - chr1_4:19699209-19699228 None:intergenic 20.0%
! TTTATTTGCATTCAGAGAAT+TGG + chr1_4:19690083-19690102 Msa0154890:intron 25.0%
!!! TAAGTTTTGTGAGTTTGTTT+GGG - chr1_4:19690517-19690536 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGTTTGTT+TGG - chr1_4:19690518-19690537 None:intergenic 25.0%
!! TTCAATGAATTTTGGATTGA+GGG - chr1_4:19690577-19690596 None:intergenic 25.0%
!! ATTCAATGAATTTTGGATTG+AGG - chr1_4:19690578-19690597 None:intergenic 25.0%
! TCTTGTCGATAACTAATATT+AGG + chr1_4:19691060-19691079 Msa0154890:intron 25.0%
! AAACTAAAGATAGTTTCTGA+CGG - chr1_4:19691143-19691162 None:intergenic 25.0%
!! AGAAACTATCTTTAGTTTCT+AGG + chr1_4:19691145-19691164 Msa0154890:intron 25.0%
!! TTCTTTTGTCTATGACTTAA+AGG - chr1_4:19691249-19691268 None:intergenic 25.0%
! TATCTAAAAGGATTGATACA+GGG - chr1_4:19691817-19691836 None:intergenic 25.0%
! TTATCTAAAAGGATTGATAC+AGG - chr1_4:19691818-19691837 None:intergenic 25.0%
! ATATCACAAATAAGTAACCA+CGG - chr1_4:19691869-19691888 None:intergenic 25.0%
!! ATATTTTCATAACCAGAATG+AGG + chr1_4:19691885-19691904 Msa0154890:intron 25.0%
! TTCATTTAAAAAGGACACAA+TGG - chr1_4:19692099-19692118 None:intergenic 25.0%
! GAATCTATATTGTCATACAT+AGG + chr1_4:19692116-19692135 Msa0154890:intron 25.0%
!!! GTTTCATTATTCTGAAATGA+AGG - chr1_4:19692245-19692264 None:intergenic 25.0%
! AATAATGAAACACAATTGTC+TGG + chr1_4:19692254-19692273 Msa0154890:intron 25.0%
! AGTAATATATCAAAATGGTC+TGG - chr1_4:19692645-19692664 None:intergenic 25.0%
!! TTTTGAATTAACTAACCAAC+AGG + chr1_4:19692701-19692720 Msa0154890:intron 25.0%
! CCGGATAATAAATAAATCAA+TGG - chr1_4:19692848-19692867 None:intergenic 25.0%
! AAATTAGGTAAAAAGCAGTT+GGG - chr1_4:19693033-19693052 None:intergenic 25.0%
! AAAATTAGGTAAAAAGCAGT+TGG - chr1_4:19693034-19693053 None:intergenic 25.0%
! GATCATATTGCTTTATATGA+GGG + chr1_4:19693623-19693642 Msa0154890:intron 25.0%
! GTTATCCTTTGTATATATAG+AGG + chr1_4:19693730-19693749 Msa0154890:intron 25.0%
! TGTAACCTCTATATATACAA+AGG - chr1_4:19693738-19693757 None:intergenic 25.0%
! TTTGATGTAATTACTTGTAC+AGG - chr1_4:19693762-19693781 None:intergenic 25.0%
! ATATGTATTGTGTAGAGAAA+CGG - chr1_4:19694199-19694218 None:intergenic 25.0%
! ATATGATTAACACTAAACCA+TGG - chr1_4:19694234-19694253 None:intergenic 25.0%
!!! ATTATTTTAATGCTTTCAGC+TGG + chr1_4:19694484-19694503 Msa0154890:intron 25.0%
! CATTTCAATTTATACAGCTT+AGG + chr1_4:19694562-19694581 Msa0154890:intron 25.0%
!!! AAAAGTGTTTTTACCAACAA+TGG + chr1_4:19694733-19694752 Msa0154890:intron 25.0%
! TGATATTATTTAGACTGGAA+AGG + chr1_4:19694944-19694963 Msa0154890:intron 25.0%
! GTCAAACATCATATATTTGT+AGG + chr1_4:19695323-19695342 Msa0154890:intron 25.0%
! GAATGTTATAATGTTTGAAC+TGG + chr1_4:19695744-19695763 Msa0154890:intron 25.0%
!! AAAACAAAATTGGTTTCAGT+AGG + chr1_4:19696165-19696184 Msa0154890:intron 25.0%
!!! ATTTTTTCTTTGCTTTTGCA+TGG + chr1_4:19696316-19696335 Msa0154890:intron 25.0%
! CATCATTTATCACAATGATT+AGG - chr1_4:19696495-19696514 None:intergenic 25.0%
! CTAATCATTGTGATAAATGA+TGG + chr1_4:19696493-19696512 Msa0154890:CDS 25.0%
!! TTACCTTTGATTATCCTTTT+AGG + chr1_4:19696773-19696792 Msa0154890:CDS 25.0%
! TATCCTAAAAGGATAATCAA+AGG - chr1_4:19696779-19696798 None:intergenic 25.0%
! TAATTATAAGGGCAAAGTAT+GGG - chr1_4:19696804-19696823 None:intergenic 25.0%
! ATACTTTGCCCTTATAATTA+GGG + chr1_4:19696804-19696823 Msa0154890:CDS 25.0%
! AATTATACCTGTGCAATATA+TGG - chr1_4:19696898-19696917 None:intergenic 25.0%
! TACAGAAAAAATTAAGCCAA+TGG + chr1_4:19697127-19697146 Msa0154890:intron 25.0%
! ACAGAAAAAATTAAGCCAAT+GGG + chr1_4:19697128-19697147 Msa0154890:intron 25.0%
!!! TAGTCTTAGACTTAGTTTTA+TGG + chr1_4:19697300-19697319 Msa0154890:intron 25.0%
!! AATTTTCCGATGAAGAATTT+TGG - chr1_4:19697332-19697351 None:intergenic 25.0%
! TTCACAACTAATATTCATGA+CGG + chr1_4:19697352-19697371 Msa0154890:intron 25.0%
! CTTTACGTTACACTATATAT+GGG + chr1_4:19697551-19697570 Msa0154890:CDS 25.0%
!!! TTTTTTCCGTGAATTTCTTT+TGG + chr1_4:19697810-19697829 Msa0154890:CDS 25.0%
! CAATAAAGTAAAAGAAGTCA+AGG - chr1_4:19697954-19697973 None:intergenic 25.0%
!! ATTGTCGAAGTTTTCAAATT+TGG + chr1_4:19698011-19698030 Msa0154890:intron 25.0%
!! TTTTATGCTAATTACAACAG+AGG + chr1_4:19698047-19698066 Msa0154890:intron 25.0%
!! GTTGGTAAAATTAACTGAAA+AGG + chr1_4:19698311-19698330 Msa0154890:intron 25.0%
!! TAACTGAAAAGGTTTGTTTA+TGG + chr1_4:19698322-19698341 Msa0154890:intron 25.0%
! CTTATTTATCTATTTGTCTG+TGG + chr1_4:19698935-19698954 Msa0154890:intron 25.0%
! TGTCAAATATACACAATTGT+GGG - chr1_4:19699136-19699155 None:intergenic 25.0%
! ATTGTGTATATTTGACAGAA+TGG + chr1_4:19699139-19699158 Msa0154890:three_prime_UTR 25.0%
! GCTATAATGATTAATGAACA+AGG - chr1_4:19699210-19699229 None:intergenic 25.0%
AATGGAAGAAGATGAACAAT+TGG + chr1_4:19690142-19690161 Msa0154890:CDS 30.0%
GAACAGTTAAGCATCATAAA+TGG - chr1_4:19690678-19690697 None:intergenic 30.0%
!!! GTGAGCTACTTTTTTTTTCT+TGG + chr1_4:19690719-19690738 Msa0154890:intron 30.0%
!! GGATTTTATGTTATTTGACG+TGG + chr1_4:19690740-19690759 Msa0154890:intron 30.0%
AAGTAGTGAATTTCTACCAT+TGG + chr1_4:19690795-19690814 Msa0154890:CDS 30.0%
AGCTAGTATTACTGCATATT+GGG + chr1_4:19690828-19690847 Msa0154890:CDS 30.0%
!! ATATTAGGCGTGTTGATTTA+AGG + chr1_4:19691075-19691094 Msa0154890:intron 30.0%
AACTAAAGATAGTTTCTGAC+GGG - chr1_4:19691142-19691161 None:intergenic 30.0%
! ATTTGAGGTGAATGATAGAT+CGG + chr1_4:19691300-19691319 Msa0154890:intron 30.0%
ACACAATGGCATATATAGAA+GGG - chr1_4:19692085-19692104 None:intergenic 30.0%
!!! TTCTGAGGTTTTTTTGTTCT+TGG + chr1_4:19692472-19692491 Msa0154890:intron 30.0%
TTATTTATTATCCGGAACCT+TGG + chr1_4:19692853-19692872 Msa0154890:CDS 30.0%
CAATGGAGACCTAAAAAATT+AGG - chr1_4:19693048-19693067 None:intergenic 30.0%
TATGTGAATGAAGGTGAAAA+TGG + chr1_4:19693121-19693140 Msa0154890:CDS 30.0%
! TTTTATCTTCCTAGGTATTC+AGG - chr1_4:19693302-19693321 None:intergenic 30.0%
!!! TTGTCGTTTTTTATCTTCCT+AGG - chr1_4:19693310-19693329 None:intergenic 30.0%
AACGACAAAATACTCTATCA+AGG + chr1_4:19693322-19693341 Msa0154890:intron 30.0%
ATGACTTCGAAATACATAGA+AGG - chr1_4:19693390-19693409 None:intergenic 30.0%
CAGTTAATTAGTTAGGACTT+AGG - chr1_4:19693418-19693437 None:intergenic 30.0%
GTTAGAGCAGTTAATTAGTT+AGG - chr1_4:19693425-19693444 None:intergenic 30.0%
GGATCATATTGCTTTATATG+AGG + chr1_4:19693622-19693641 Msa0154890:intron 30.0%
!! AATTTGTTGCAACTGATTGA+TGG + chr1_4:19693935-19693954 Msa0154890:intron 30.0%
CTAGTGAATGATTGTATGTA+TGG + chr1_4:19694001-19694020 Msa0154890:intron 30.0%
TATAGAGAGAGAAATAGAGT+GGG - chr1_4:19694141-19694160 None:intergenic 30.0%
ATATAGAGAGAGAAATAGAG+TGG - chr1_4:19694142-19694161 None:intergenic 30.0%
TCTTATCACAGTTCAATTTC+AGG + chr1_4:19694311-19694330 Msa0154890:intron 30.0%
AACAGTTAACAATCCATTGT+TGG - chr1_4:19694749-19694768 None:intergenic 30.0%
!! AACAATGGATTGTTAACTGT+TGG + chr1_4:19694748-19694767 Msa0154890:intron 30.0%
ATTAAAGATGTCAAGGATAG+TGG - chr1_4:19694795-19694814 None:intergenic 30.0%
GTGAAACATTAAAGATGTCA+AGG - chr1_4:19694802-19694821 None:intergenic 30.0%
GTGGATGATATTATTTAGAC+TGG + chr1_4:19694939-19694958 Msa0154890:intron 30.0%
TTATTTAGACTGGAAAGGAT+TGG + chr1_4:19694949-19694968 Msa0154890:intron 30.0%
! GGCTCAATTACAATTGTTTT+GGG + chr1_4:19695089-19695108 Msa0154890:intron 30.0%
!!! TACAATTGTTTTGGGTTCAA+TGG + chr1_4:19695097-19695116 Msa0154890:intron 30.0%
!!! ACAATTGTTTTGGGTTCAAT+GGG + chr1_4:19695098-19695117 Msa0154890:intron 30.0%
AAACTTGCAATACTTGACTT+TGG + chr1_4:19695294-19695313 Msa0154890:CDS 30.0%
! CAAGAAATGTTATCTAGTTC+AGG - chr1_4:19695516-19695535 None:intergenic 30.0%
CTGAACTAGATAACATTTCT+TGG + chr1_4:19695514-19695533 Msa0154890:intron 30.0%
!! ATAATGATATACGGTGCTAT+AGG - chr1_4:19695612-19695631 None:intergenic 30.0%
ATAACATTCATTGCAAGTTC+TGG - chr1_4:19695733-19695752 None:intergenic 30.0%
TTTGTATATGGTATAAGCGT+AGG + chr1_4:19695825-19695844 Msa0154890:intron 30.0%
! AAATTGGTTTCAGTAGGAAA+TGG + chr1_4:19696171-19696190 Msa0154890:intron 30.0%
! GTGAAATTTAACCTGATTTG+TGG + chr1_4:19696193-19696212 Msa0154890:intron 30.0%
! TTTTAGATGAACCACAAATC+AGG - chr1_4:19696207-19696226 None:intergenic 30.0%
!!! AACTTCATTTTTTCTGCTTC+AGG + chr1_4:19696267-19696286 Msa0154890:intron 30.0%
ACACTTGTCTTAATGTCTAA+AGG - chr1_4:19696355-19696374 None:intergenic 30.0%
! CATTCCATACTTTTGATCAT+CGG - chr1_4:19696557-19696576 None:intergenic 30.0%
TTTAACGAAGTCTTTCACTA+TGG - chr1_4:19696620-19696639 None:intergenic 30.0%
! GGCAAAAAACATCAATTTTC+AGG + chr1_4:19696726-19696745 Msa0154890:CDS 30.0%
AATTATAAGGGCAAAGTATG+GGG - chr1_4:19696803-19696822 None:intergenic 30.0%
CTAATTATAAGGGCAAAGTA+TGG - chr1_4:19696805-19696824 None:intergenic 30.0%
CATACTTTGCCCTTATAATT+AGG + chr1_4:19696803-19696822 Msa0154890:CDS 30.0%
!! ACTGGCTTATACTTTTAACT+TGG + chr1_4:19696966-19696985 Msa0154890:intron 30.0%
! TGATGTCAAGTTTTACTTGA+AGG + chr1_4:19697003-19697022 Msa0154890:intron 30.0%
!!! AGACAGAAATTTTTTCCCAT+TGG - chr1_4:19697146-19697165 None:intergenic 30.0%
AAAAATTTCTGTCTAGTGTC+TGG + chr1_4:19697152-19697171 Msa0154890:intron 30.0%
TCTAGTGTCTGGAAATAAAA+GGG + chr1_4:19697163-19697182 Msa0154890:intron 30.0%
AGTACACCAAAATTCTTCAT+CGG + chr1_4:19697323-19697342 Msa0154890:intron 30.0%
!!! ATATTCATGACGGATTTTGA+TGG + chr1_4:19697362-19697381 Msa0154890:intron 30.0%
GCTTTACGTTACACTATATA+TGG + chr1_4:19697550-19697569 Msa0154890:CDS 30.0%
TACACTATATATGGGAAATC+TGG + chr1_4:19697559-19697578 Msa0154890:CDS 30.0%
AGCTGTAATAAAATTCTCGA+AGG - chr1_4:19697623-19697642 None:intergenic 30.0%
GGAGTTATTGTACTTTCATA+TGG - chr1_4:19697925-19697944 None:intergenic 30.0%
AGTTAAATCTGAACAAGGTA+TGG + chr1_4:19698150-19698169 Msa0154890:intron 30.0%
! TTTTGTCGTAAAATTCCACA+TGG + chr1_4:19698256-19698275 Msa0154890:intron 30.0%
ATGACTCCAAAAACAGTTTA+TGG - chr1_4:19698408-19698427 None:intergenic 30.0%
GTAAGAATTATGTCCTTACT+AGG + chr1_4:19698631-19698650 Msa0154890:CDS 30.0%
AACTTTATCCTCTTCAGTTA+TGG - chr1_4:19698731-19698750 None:intergenic 30.0%
TTCTTAGCAGATTATCTTCT+CGG + chr1_4:19699044-19699063 Msa0154890:CDS 30.0%
CTGTCAAATATACACAATTG+TGG - chr1_4:19699137-19699156 None:intergenic 30.0%
GATTAATGAACAAGGGTAAA+TGG - chr1_4:19699202-19699221 None:intergenic 30.0%
ATAAGCCAAATCAATTATGC+TGG + chr1_4:19699272-19699291 Msa0154890:three_prime_UTR 30.0%
AATAGCCAGCATAATTGATT+TGG - chr1_4:19699280-19699299 None:intergenic 30.0%
CACGTTGAAATCAGTGAATT+CGG - chr1_4:19690059-19690078 None:intergenic 35.0%
CAATATGCAGTAATACTAGC+TGG - chr1_4:19690829-19690848 None:intergenic 35.0%
CAGCTAGTATTACTGCATAT+TGG + chr1_4:19690827-19690846 Msa0154890:CDS 35.0%
GCTAGTATTACTGCATATTG+GGG + chr1_4:19690829-19690848 Msa0154890:CDS 35.0%
GGTTAACAAGAAGGTTAAAG+AGG + chr1_4:19690936-19690955 Msa0154890:CDS 35.0%
AGAGAAGAAACAGAAAGCAA+GGG - chr1_4:19691043-19691062 None:intergenic 35.0%
AAGAGAAGAAACAGAAAGCA+AGG - chr1_4:19691044-19691063 None:intergenic 35.0%
! TTTGAGGTGAATGATAGATC+GGG + chr1_4:19691301-19691320 Msa0154890:intron 35.0%
TAGAAGTTTCCAGTTACGTA+TGG + chr1_4:19691352-19691371 Msa0154890:intron 35.0%
TGTTATCATGTGTGTTGCAT+GGG - chr1_4:19691435-19691454 None:intergenic 35.0%
ATGTTATCATGTGTGTTGCA+TGG - chr1_4:19691436-19691455 None:intergenic 35.0%
TTTGCACAACAACATTGTGT+TGG + chr1_4:19691618-19691637 Msa0154890:intron 35.0%
GTTTACAAAACCAGCTTGTA+AGG - chr1_4:19691773-19691792 None:intergenic 35.0%
TTGTGCTATATATTTCACCG+TGG + chr1_4:19691849-19691868 Msa0154890:intron 35.0%
ACGTGAAATTGTGACATCTT+TGG + chr1_4:19691927-19691946 Msa0154890:CDS 35.0%
CGTGAAATTGTGACATCTTT+GGG + chr1_4:19691928-19691947 Msa0154890:CDS 35.0%
GTCCAGCATACATAAAACTT+GGG + chr1_4:19691950-19691969 Msa0154890:CDS 35.0%
GACACAATGGCATATATAGA+AGG - chr1_4:19692086-19692105 None:intergenic 35.0%
GACAGCAATTCTTGTAAGAA+GGG - chr1_4:19692373-19692392 None:intergenic 35.0%
AGACAGCAATTCTTGTAAGA+AGG - chr1_4:19692374-19692393 None:intergenic 35.0%
! AGAATTGCTGTCTGATGTTT+TGG + chr1_4:19692381-19692400 Msa0154890:intron 35.0%
!!! TGAGGTTTTTTTGTTCTTGG+TGG + chr1_4:19692475-19692494 Msa0154890:intron 35.0%
!!! GAGGTTTTTTTGTTCTTGGT+GGG + chr1_4:19692476-19692495 Msa0154890:intron 35.0%
!!! AGGTTTTTTTGTTCTTGGTG+GGG + chr1_4:19692477-19692496 Msa0154890:intron 35.0%
! GAAGGAACCTTCACATTTTA+TGG - chr1_4:19692516-19692535 None:intergenic 35.0%
! TCAGAATAGACATTTTGCCA+TGG - chr1_4:19692588-19692607 None:intergenic 35.0%
ACAAGAAAACAGATACCTGT+TGG - chr1_4:19692719-19692738 None:intergenic 35.0%
!! ACAAGAATTTAACTTGCCTG+AGG - chr1_4:19692898-19692917 None:intergenic 35.0%
GAGTTAGACTATGTGAATGA+AGG + chr1_4:19693112-19693131 Msa0154890:CDS 35.0%
CAGGTCTTTCTTCATCATTT+CGG - chr1_4:19693158-19693177 None:intergenic 35.0%
TACTGACGTAAAACAGATAG+TGG - chr1_4:19693232-19693251 None:intergenic 35.0%
ACACTAAGCAGAAATTCTTG+CGG + chr1_4:19693255-19693274 Msa0154890:intron 35.0%
TCTTCCCACAACACATTAAT+CGG + chr1_4:19693361-19693380 Msa0154890:intron 35.0%
ACTTCGAAATACATAGAAGG+AGG - chr1_4:19693387-19693406 None:intergenic 35.0%
AACTGCTCTAACAGTTTACA+TGG + chr1_4:19693433-19693452 Msa0154890:intron 35.0%
AGTTGGTCCAACAAATCAAA+CGG - chr1_4:19693498-19693517 None:intergenic 35.0%
GGAAAGAAAGTAACATCAGT+TGG - chr1_4:19693515-19693534 None:intergenic 35.0%
CCTTGACACATATCATCAAT+AGG - chr1_4:19693688-19693707 None:intergenic 35.0%
! CCTATTGATGATATGTGTCA+AGG + chr1_4:19693685-19693704 Msa0154890:intron 35.0%
! TTGATGATATGTGTCAAGGT+TGG + chr1_4:19693689-19693708 Msa0154890:intron 35.0%
GTCTCATCATATTGTGAATC+AGG - chr1_4:19693876-19693895 None:intergenic 35.0%
ATGATGAGACTGAGAACATT+AGG + chr1_4:19693886-19693905 Msa0154890:intron 35.0%
GAATTTGTAAAGAAAGAGCG+TGG - chr1_4:19694119-19694138 None:intergenic 35.0%
! ACTAAACCATGGTGTCAAAT+CGG - chr1_4:19694223-19694242 None:intergenic 35.0%
!! GTATACTTGCTGTAAGTTCT+TGG - chr1_4:19694345-19694364 None:intergenic 35.0%
CTTACAGCAAGTATACATCA+AGG + chr1_4:19694349-19694368 Msa0154890:CDS 35.0%
!! CTTACAACAGAATGGATTGA+CGG + chr1_4:19694378-19694397 Msa0154890:CDS 35.0%
GTCGGAGAATTAGTTAATGT+TGG + chr1_4:19694432-19694451 Msa0154890:CDS 35.0%
AGTTATCTGCTACCTAAAAC+AGG + chr1_4:19694455-19694474 Msa0154890:CDS 35.0%
AAGATGTAGCTTAAAGCTCA+CGG - chr1_4:19694529-19694548 None:intergenic 35.0%
TCTTTAATGTTTCACTTCCC+TGG + chr1_4:19694807-19694826 Msa0154890:intron 35.0%
CTCTAAATAAGTAATGGCAG+AGG - chr1_4:19694852-19694871 None:intergenic 35.0%
!! GAGATAATTGATAGCGTATG+TGG + chr1_4:19694920-19694939 Msa0154890:intron 35.0%
TATTTGGGTCCTCTAAATTC+AGG + chr1_4:19695013-19695032 Msa0154890:intron 35.0%
ATTTGGGTCCTCTAAATTCA+GGG + chr1_4:19695014-19695033 Msa0154890:intron 35.0%
! GGGCTCAATTACAATTGTTT+TGG + chr1_4:19695088-19695107 Msa0154890:intron 35.0%
TTATTTCAGCTGCTTGATAC+TGG + chr1_4:19695219-19695238 Msa0154890:intron 35.0%
! AGTATTGCAAGTTTTCCATC+AGG - chr1_4:19695288-19695307 None:intergenic 35.0%
TTGCAATACTTGACTTTGGT+AGG + chr1_4:19695298-19695317 Msa0154890:intron 35.0%
TTGATTCAAATGTGTGCATG+AGG + chr1_4:19695361-19695380 Msa0154890:intron 35.0%
TGATTCAAATGTGTGCATGA+GGG + chr1_4:19695362-19695381 Msa0154890:intron 35.0%
!! AAGACTTCGTGTGTTTTGTT+TGG + chr1_4:19695482-19695501 Msa0154890:intron 35.0%
TGTGGCTAGATATTGTTCAT+TGG + chr1_4:19696392-19696411 Msa0154890:intron 35.0%
! ATGAAGTTGATCAAGACAAC+TGG - chr1_4:19696424-19696443 None:intergenic 35.0%
!!! TCAACTTCATTGCTTTTTCC+TGG + chr1_4:19696434-19696453 Msa0154890:CDS 35.0%
TATCACAATGATTAGGACAG+TGG - chr1_4:19696488-19696507 None:intergenic 35.0%
! GAAATCTTTTGTTGCACCTA+GGG + chr1_4:19696515-19696534 Msa0154890:CDS 35.0%
! TCAATTTTGTAACAAGCCCT+AGG - chr1_4:19696534-19696553 None:intergenic 35.0%
TTGACCGATGATCAAAAGTA+TGG + chr1_4:19696550-19696569 Msa0154890:CDS 35.0%
GTGAAAGACTTCGTTAAACT+TGG + chr1_4:19696622-19696641 Msa0154890:CDS 35.0%
! GATCTAAATTGACTCCATCT+GGG - chr1_4:19696654-19696673 None:intergenic 35.0%
!! AAACATCAATTTTCAGGAGC+TGG + chr1_4:19696732-19696751 Msa0154890:CDS 35.0%
ATTATAAGGGCAAAGTATGG+GGG - chr1_4:19696802-19696821 None:intergenic 35.0%
TCATCAACAATGGCAAAATC+AGG - chr1_4:19696868-19696887 None:intergenic 35.0%
TACCTGTGCAATATATGGAT+AGG - chr1_4:19696893-19696912 None:intergenic 35.0%
ATTGCACAGGTATAATTGTC+TGG + chr1_4:19696901-19696920 Msa0154890:intron 35.0%
TCTTTCAAGCACTTCTTGTT+CGG - chr1_4:19697065-19697084 None:intergenic 35.0%
GTCTAGTGTCTGGAAATAAA+AGG + chr1_4:19697162-19697181 Msa0154890:intron 35.0%
CTAGTGTCTGGAAATAAAAG+GGG + chr1_4:19697164-19697183 Msa0154890:intron 35.0%
TAGTGTCTGGAAATAAAAGG+GGG + chr1_4:19697165-19697184 Msa0154890:intron 35.0%
! ACAATTTTGGACATGATGCA+CGG + chr1_4:19697244-19697263 Msa0154890:intron 35.0%
TTACTGATAGAGACTCTTGA+CGG + chr1_4:19697504-19697523 Msa0154890:intron 35.0%
TTTATTACAGCTGCCAAAAG+TGG + chr1_4:19697631-19697650 Msa0154890:CDS 35.0%
ATCAGACAGCAAAAATGCTA+GGG - chr1_4:19697782-19697801 None:intergenic 35.0%
TATCAGACAGCAAAAATGCT+AGG - chr1_4:19697783-19697802 None:intergenic 35.0%
!! AGCATTTTTGCTGTCTGATA+AGG + chr1_4:19697783-19697802 Msa0154890:CDS 35.0%
!! GCATTTTTGCTGTCTGATAA+GGG + chr1_4:19697784-19697803 Msa0154890:CDS 35.0%
!! CATTTTTGCTGTCTGATAAG+GGG + chr1_4:19697785-19697804 Msa0154890:CDS 35.0%
AGCGTAGTTAAATCTGAACA+AGG + chr1_4:19698145-19698164 Msa0154890:intron 35.0%
GATTCAAGAAAAATTCGCCT+AGG + chr1_4:19698194-19698213 Msa0154890:intron 35.0%
! CTAGGTACAATGTTACTTCT+GGG + chr1_4:19698212-19698231 Msa0154890:intron 35.0%
AAACAAAACTTAAGCGCCAT+AGG - chr1_4:19698362-19698381 None:intergenic 35.0%
! TAGCCACCATAAACTGTTTT+TGG + chr1_4:19698399-19698418 Msa0154890:intron 35.0%
ACTCCAAAAACAGTTTATGG+TGG - chr1_4:19698405-19698424 None:intergenic 35.0%
TAGGTACCATACCGAAAATA+GGG - chr1_4:19698672-19698691 None:intergenic 35.0%
TTATCCTCTTCAGTTATGGT+GGG - chr1_4:19698727-19698746 None:intergenic 35.0%
TTTATCCTCTTCAGTTATGG+TGG - chr1_4:19698728-19698747 None:intergenic 35.0%
TTTATCTATTTGTCTGTGGG+TGG + chr1_4:19698939-19698958 Msa0154890:intron 35.0%
AGAAGTTCTTGGATAATCTG+AGG - chr1_4:19698983-19699002 None:intergenic 35.0%
GATAATCTGCTAAGAACATC+AGG - chr1_4:19699040-19699059 None:intergenic 35.0%
TCTTAGCAGATTATCTTCTC+GGG + chr1_4:19699045-19699064 Msa0154890:CDS 35.0%
CAAATATACACAATTGTGGG+TGG - chr1_4:19699133-19699152 None:intergenic 35.0%
GAGTAAACAGCATTCCACAA+TGG + chr1_4:19689775-19689794 Msa0154890:exon 40.0%
!! GAGAATTGGTGATGTTTCGA+AGG + chr1_4:19690097-19690116 Msa0154890:intron 40.0%
! CAATTGGCAAGTCTTATGAG+AGG + chr1_4:19690158-19690177 Msa0154890:CDS 40.0%
TAATGATTCGCTCTTTGCTG+AGG + chr1_4:19690199-19690218 Msa0154890:CDS 40.0%
!! TGTTCAACTACGACTTGTTG+AGG + chr1_4:19690226-19690245 Msa0154890:CDS 40.0%
! ATTTTGGATTGAGGGTCTGT+TGG - chr1_4:19690569-19690588 None:intergenic 40.0%
GTGCAGTTATTATCTGTTGC+TGG + chr1_4:19690883-19690902 Msa0154890:CDS 40.0%
CAGTTATTATCTGTTGCTGG+AGG + chr1_4:19690886-19690905 Msa0154890:CDS 40.0%
! TTGCTGGAGGTTTTCTTTCT+CGG + chr1_4:19690899-19690918 Msa0154890:CDS 40.0%
TAAGCTCATCCATACGTAAC+TGG - chr1_4:19691364-19691383 None:intergenic 40.0%
TGGAAATTCCACCCTAATTG+CGG + chr1_4:19691638-19691657 Msa0154890:intron 40.0%
TCTAGCACCTTCATTGTTCT+GGG + chr1_4:19691712-19691731 Msa0154890:intron 40.0%
ACTCAAACCCAGAACAATGA+AGG - chr1_4:19691722-19691741 None:intergenic 40.0%
! TTCATTGTTCTGGGTTTGAG+TGG + chr1_4:19691721-19691740 Msa0154890:intron 40.0%
! TCATTGTTCTGGGTTTGAGT+GGG + chr1_4:19691722-19691741 Msa0154890:intron 40.0%
TGAGTGGGGAATATAAAGCT+TGG + chr1_4:19691737-19691756 Msa0154890:intron 40.0%
GAGTGGGGAATATAAAGCTT+GGG + chr1_4:19691738-19691757 Msa0154890:intron 40.0%
TTCACGTATTTCAATAGCCC+TGG - chr1_4:19691914-19691933 None:intergenic 40.0%
GGTCCAGCATACATAAAACT+TGG + chr1_4:19691949-19691968 Msa0154890:CDS 40.0%
!! TGCCCAAGTTTTATGTATGC+TGG - chr1_4:19691955-19691974 None:intergenic 40.0%
AGCATGCAATGAAAGGGTAA+AGG - chr1_4:19692062-19692081 None:intergenic 40.0%
!!! GTCACTGCAGAGAGTTTTTT+TGG - chr1_4:19692309-19692328 None:intergenic 40.0%
!!! GTAAGCTCGTACTTTTTCTG+AGG + chr1_4:19692457-19692476 Msa0154890:intron 40.0%
!!! GGTTTTTTTGTTCTTGGTGG+GGG + chr1_4:19692478-19692497 Msa0154890:intron 40.0%
GGGGATTCCATAAAATGTGA+AGG + chr1_4:19692506-19692525 Msa0154890:intron 40.0%
TCCTTCATTTGCAGATGATG+TGG + chr1_4:19692530-19692549 Msa0154890:CDS 40.0%
ATTTGCAGATGATGTGGCTA+TGG + chr1_4:19692536-19692555 Msa0154890:CDS 40.0%
GCTCTAATTGAAGAGGAACT+TGG + chr1_4:19692558-19692577 Msa0154890:CDS 40.0%
AAAATGGTCTGGAAAGCTAC+CGG - chr1_4:19692634-19692653 None:intergenic 40.0%
GAAACATATGCAGCATCTCT+CGG + chr1_4:19692739-19692758 Msa0154890:intron 40.0%
ATCTCTCGGACAGGTATATA+AGG + chr1_4:19692753-19692772 Msa0154890:CDS 40.0%
TCTCTCGGACAGGTATATAA+GGG + chr1_4:19692754-19692773 Msa0154890:CDS 40.0%
GTAACTGTCTCGAGAACAAA+AGG - chr1_4:19692826-19692845 None:intergenic 40.0%
TATTATCCGGAACCTTGGTT+TGG + chr1_4:19692858-19692877 Msa0154890:CDS 40.0%
! ATTTTCGAAGAGCCAAACCA+AGG - chr1_4:19692873-19692892 None:intergenic 40.0%
!!! TTTTTAGGTCTCCATTGACG+TGG + chr1_4:19693051-19693070 Msa0154890:intron 40.0%
GAAATTATTGGACTCACCTG+TGG - chr1_4:19693181-19693200 None:intergenic 40.0%
TTTGTTCCTCCTGAATACCT+AGG + chr1_4:19693290-19693309 Msa0154890:intron 40.0%
TATCTTCCTAGGTATTCAGG+AGG - chr1_4:19693299-19693318 None:intergenic 40.0%
GCATACGCAAACAGATCATT+GGG - chr1_4:19693666-19693685 None:intergenic 40.0%
! TTTGTAAAGAAAGAGCGTGG+TGG - chr1_4:19694116-19694135 None:intergenic 40.0%
! CTAAACCATGGTGTCAAATC+GGG - chr1_4:19694222-19694241 None:intergenic 40.0%
ACAGCAAGTATACATCAAGG+AGG + chr1_4:19694352-19694371 Msa0154890:CDS 40.0%
CAGCAAGTATACATCAAGGA+GGG + chr1_4:19694353-19694372 Msa0154890:CDS 40.0%
CAGAGCAAAGAAAGCAATGT+CGG + chr1_4:19694414-19694433 Msa0154890:CDS 40.0%
AGATGTAGCTTAAAGCTCAC+GGG - chr1_4:19694528-19694547 None:intergenic 40.0%
!! AGGATAGTGGAACATTAGTG+AGG - chr1_4:19694782-19694801 None:intergenic 40.0%
TTAGACTGGAAAGGATTGGA+AGG + chr1_4:19694953-19694972 Msa0154890:intron 40.0%
AATCCAGTCCCTGAATTTAG+AGG - chr1_4:19695025-19695044 None:intergenic 40.0%
!! TTGCTTTTGCATGGCGATTT+TGG + chr1_4:19696325-19696344 Msa0154890:intron 40.0%
ATTAAACATTAGTGGCGTCC+AGG - chr1_4:19696455-19696474 None:intergenic 40.0%
! GGAAATCTTTTGTTGCACCT+AGG + chr1_4:19696514-19696533 Msa0154890:CDS 40.0%
CAATTGCTCATCTCATCCAT+CGG + chr1_4:19696584-19696603 Msa0154890:CDS 40.0%
AATTGCTCATCTCATCCATC+GGG + chr1_4:19696585-19696604 Msa0154890:CDS 40.0%
AAACTTGGTTTCATCCCAGA+TGG + chr1_4:19696637-19696656 Msa0154890:CDS 40.0%
! GGATCTAAATTGACTCCATC+TGG - chr1_4:19696655-19696674 None:intergenic 40.0%
!! AAGTATGGGGGTATCCTAAA+AGG - chr1_4:19696790-19696809 None:intergenic 40.0%
GCCCTTATAATTAGGGCTAT+CGG + chr1_4:19696811-19696830 Msa0154890:CDS 40.0%
CCCGATAGCCCTAATTATAA+GGG - chr1_4:19696815-19696834 None:intergenic 40.0%
CCCTTATAATTAGGGCTATC+GGG + chr1_4:19696812-19696831 Msa0154890:CDS 40.0%
CCTTATAATTAGGGCTATCG+GGG + chr1_4:19696813-19696832 Msa0154890:CDS 40.0%
TGGATAGGCTTCATCAACAA+TGG - chr1_4:19696878-19696897 None:intergenic 40.0%
AGCCTATCCATATATTGCAC+AGG + chr1_4:19696888-19696907 Msa0154890:CDS 40.0%
CAGTTCTTGACAATGACACA+GGG - chr1_4:19696950-19696969 None:intergenic 40.0%
CTTTCAAGCACTTCTTGTTC+GGG - chr1_4:19697064-19697083 None:intergenic 40.0%
GATGTAATTGGATGCCTTCA+AGG + chr1_4:19697193-19697212 Msa0154890:intron 40.0%
ATTGGATGCCTTCAAGGTTT+AGG + chr1_4:19697199-19697218 Msa0154890:intron 40.0%
TTGGATGCCTTCAAGGTTTA+GGG + chr1_4:19697200-19697219 Msa0154890:intron 40.0%
! CAATTTTGGACATGATGCAC+GGG + chr1_4:19697245-19697264 Msa0154890:intron 40.0%
GCACAAGAAAATTTGCAGTG+TGG - chr1_4:19697433-19697452 None:intergenic 40.0%
AGCTTGGGCTTATTACTAAC+CGG + chr1_4:19697686-19697705 Msa0154890:CDS 40.0%
GTTGTTGAGATGTTACAGAC+TGG - chr1_4:19697735-19697754 None:intergenic 40.0%
CCTCGTCCAAAAGAAATTCA+CGG - chr1_4:19697819-19697838 None:intergenic 40.0%
TAAAAGAAGTCAAGGACGAG+AGG - chr1_4:19697946-19697965 None:intergenic 40.0%
CCAGAAGTAACATTGTACCT+AGG - chr1_4:19698214-19698233 None:intergenic 40.0%
! CCTAGGTACAATGTTACTTC+TGG + chr1_4:19698211-19698230 Msa0154890:intron 40.0%
TGTCGTAAAATTCCACATGG+TGG + chr1_4:19698259-19698278 Msa0154890:intron 40.0%
GTTTACTATGAACGAGCGTA+TGG + chr1_4:19698448-19698467 Msa0154890:intron 40.0%
! TCTGCGCAAGTGTTGTTATA+TGG + chr1_4:19698534-19698553 Msa0154890:intron 40.0%
TGATTGACTGCAGATTGTCA+AGG + chr1_4:19698579-19698598 Msa0154890:intron 40.0%
GATTGACTGCAGATTGTCAA+GGG + chr1_4:19698580-19698599 Msa0154890:intron 40.0%
TGCATTCTGAACTCCTAGTA+AGG - chr1_4:19698647-19698666 None:intergenic 40.0%
! CAGAATGCAAGCCCTATTTT+CGG + chr1_4:19698658-19698677 Msa0154890:CDS 40.0%
GTAGGTACCATACCGAAAAT+AGG - chr1_4:19698673-19698692 None:intergenic 40.0%
TATACCCACCATAACTGAAG+AGG + chr1_4:19698720-19698739 Msa0154890:CDS 40.0%
!! TGTGGGTGGATTAAGCATTA+AGG - chr1_4:19699119-19699138 None:intergenic 40.0%
GGATGATGCTGTATCCATTG+TGG - chr1_4:19689792-19689811 None:intergenic 45.0%
CCTTGAAGAAGAACCGTTGA+CGG - chr1_4:19689951-19689970 None:intergenic 45.0%
! TAAGAGAGTGAGAGCGCAAA+TGG + chr1_4:19690124-19690143 Msa0154890:CDS 45.0%
! AGTCTTATGAGAGGTCTTCG+TGG + chr1_4:19690167-19690186 Msa0154890:CDS 45.0%
CTAGCTGGATCATACACCAA+TGG - chr1_4:19690814-19690833 None:intergenic 45.0%
! TGCTGGAGGTTTTCTTTCTC+GGG + chr1_4:19690900-19690919 Msa0154890:CDS 45.0%
!! TTTTCTTTCTCGGGTTGCGT+GGG + chr1_4:19690909-19690928 Msa0154890:CDS 45.0%
GTGGGATGTGGTTAACAAGA+AGG + chr1_4:19690927-19690946 Msa0154890:CDS 45.0%
GCAAGCTACTCAGTCTATCT+TGG - chr1_4:19690975-19690994 None:intergenic 45.0%
CTAAGGGTAGACCGCAATTA+GGG - chr1_4:19691652-19691671 None:intergenic 45.0%
ACCCTTAGGCGCCTTAATAT+CGG + chr1_4:19691664-19691683 Msa0154890:intron 45.0%
!! CAACCCAAGTGCCGATATTA+AGG - chr1_4:19691678-19691697 None:intergenic 45.0%
!! CAGAACAATGAAGGTGCTAG+AGG - chr1_4:19691713-19691732 None:intergenic 45.0%
CTCTAGCACCTTCATTGTTC+TGG + chr1_4:19691711-19691730 Msa0154890:intron 45.0%
! CATTGTTCTGGGTTTGAGTG+GGG + chr1_4:19691723-19691742 Msa0154890:intron 45.0%
ATAACCAGAATGAGGTTGCC+AGG + chr1_4:19691893-19691912 Msa0154890:intron 45.0%
TAACCAGAATGAGGTTGCCA+GGG + chr1_4:19691894-19691913 Msa0154890:intron 45.0%
! GAAGGGAGCATGCAATGAAA+GGG - chr1_4:19692068-19692087 None:intergenic 45.0%
! AGAAGGGAGCATGCAATGAA+AGG - chr1_4:19692069-19692088 None:intergenic 45.0%
!!! TTTTTTGTTCTTGGTGGGGG+TGG + chr1_4:19692481-19692500 Msa0154890:intron 45.0%
! TTTTTGTTCTTGGTGGGGGT+GGG + chr1_4:19692482-19692501 Msa0154890:intron 45.0%
GCCACATCATCTGCAAATGA+AGG - chr1_4:19692534-19692553 None:intergenic 45.0%
!! GGCTATGGCTCTAATTGAAG+AGG + chr1_4:19692551-19692570 Msa0154890:CDS 45.0%
! AATCCCCATTTTCCTTCAGG+CGG - chr1_4:19692780-19692799 None:intergenic 45.0%
! CCAAATCCCCATTTTCCTTC+AGG - chr1_4:19692783-19692802 None:intergenic 45.0%
CCTGAAGGAAAATGGGGATT+TGG + chr1_4:19692780-19692799 Msa0154890:CDS 45.0%
GGCTCTTCGAAAATTTCCTC+AGG + chr1_4:19692879-19692898 Msa0154890:CDS 45.0%
TCTTCATCATTTCGGCGAAG+CGG - chr1_4:19693150-19693169 None:intergenic 45.0%
GCAGAAATTCTTGCGGAATC+TGG + chr1_4:19693262-19693281 Msa0154890:intron 45.0%
CTATCAAGGACTCAAGAGCT+TGG + chr1_4:19693336-19693355 Msa0154890:intron 45.0%
GAGGCCGATTAATGTGTTGT+GGG - chr1_4:19693368-19693387 None:intergenic 45.0%
TTTACATGGCCTGCTCTCAA+CGG + chr1_4:19693447-19693466 Msa0154890:intron 45.0%
!! GGATCGTCCGTTTGATTTGT+TGG + chr1_4:19693488-19693507 Msa0154890:intron 45.0%
GGCATACGCAAACAGATCAT+TGG - chr1_4:19693667-19693686 None:intergenic 45.0%
TTGTGTAGAGAAACGGAGCA+TGG - chr1_4:19694192-19694211 None:intergenic 45.0%
! CATATCCCGATTTGACACCA+TGG + chr1_4:19694214-19694233 Msa0154890:intron 45.0%
GGAGGGTTCTTACAACAGAA+TGG + chr1_4:19694370-19694389 Msa0154890:CDS 45.0%
! TTTTCATGCTGATCCTCACC+CGG + chr1_4:19695245-19695264 Msa0154890:CDS 45.0%
AATATGATCCGCACTCCTGA+TGG + chr1_4:19695270-19695289 Msa0154890:CDS 45.0%
! CAAGTTTTCCATCAGGAGTG+CGG - chr1_4:19695281-19695300 None:intergenic 45.0%
! TTGAGTAGTTGACTCCACGA+AGG + chr1_4:19695454-19695473 Msa0154890:intron 45.0%
! CGAAGTCTTTTTCTCCTTCG+TGG - chr1_4:19695471-19695490 None:intergenic 45.0%
ACGAAGTCTTTCACTATGGC+TGG - chr1_4:19696616-19696635 None:intergenic 45.0%
!! TTTGCAAGCACTGGCAAGAT+AGG - chr1_4:19696676-19696695 None:intergenic 45.0%
TATCTTGCCAGTGCTTGCAA+AGG + chr1_4:19696675-19696694 Msa0154890:CDS 45.0%
TCAAAGACCTTTGCAAGCAC+TGG - chr1_4:19696685-19696704 None:intergenic 45.0%
!! GTCTTTGACCAGGCTTTAGA+AGG + chr1_4:19696697-19696716 Msa0154890:CDS 45.0%
!! TTTGACCAGGCTTTAGAAGG+TGG + chr1_4:19696700-19696719 Msa0154890:CDS 45.0%
CCCCGATAGCCCTAATTATA+AGG - chr1_4:19696816-19696835 None:intergenic 45.0%
!! CTGGAAGGGATAGCTTTAGT+AGG + chr1_4:19696838-19696857 Msa0154890:CDS 45.0%
CCAGTTCTTGACAATGACAC+AGG - chr1_4:19696951-19696970 None:intergenic 45.0%
! CCTGTGTCATTGTCAAGAAC+TGG + chr1_4:19696948-19696967 Msa0154890:intron 45.0%
AAGGGGGACATCGATGTAAT+TGG + chr1_4:19697181-19697200 Msa0154890:intron 45.0%
TGGATGCCTTCAAGGTTTAG+GGG + chr1_4:19697201-19697220 Msa0154890:intron 45.0%
ATTACAGCTGCCAAAAGTGG+AGG + chr1_4:19697634-19697653 Msa0154890:CDS 45.0%
AGAGGATCTGAAAGGGAGTA+TGG + chr1_4:19697660-19697679 Msa0154890:CDS 45.0%
GATGTTACAGACTGGAATCC+CGG - chr1_4:19697727-19697746 None:intergenic 45.0%
! CCGTGAATTTCTTTTGGACG+AGG + chr1_4:19697816-19697835 Msa0154890:CDS 45.0%
GCAAAAGTAATGCCACCATG+TGG - chr1_4:19698274-19698293 None:intergenic 45.0%
TGCTGTGACAAGGGAACAAA+TGG + chr1_4:19698609-19698628 Msa0154890:CDS 45.0%
! TGCAAGCCCTATTTTCGGTA+TGG + chr1_4:19698663-19698682 Msa0154890:CDS 45.0%
TTCGGTATGGTACCTACCAT+TGG + chr1_4:19698676-19698695 Msa0154890:CDS 45.0%
!! TATGGTGGGTATAAGAGCTG+CGG - chr1_4:19698713-19698732 None:intergenic 45.0%
! GAACAATGTCCAGAAAGTGC+TGG + chr1_4:19698756-19698775 Msa0154890:CDS 45.0%
TCAAGAACTCCAGCACTTTC+TGG - chr1_4:19698768-19698787 None:intergenic 45.0%
TCTGTCAAGCACATCTAGTC+AGG + chr1_4:19698801-19698820 Msa0154890:CDS 45.0%
TGAGGAACATTGAGAGCCTA+AGG - chr1_4:19698965-19698984 None:intergenic 45.0%
AGCACTTTAGCAGAAATGCC+CGG - chr1_4:19699016-19699035 None:intergenic 45.0%
!! TATATGTTAATTTATTAATA+TGG + chr1_4:19692937-19692956 Msa0154890:intron 5.0%
!! ACAAATTATTTAAAAATTTA+GGG - chr1_4:19694994-19695013 None:intergenic 5.0%
!! TACAAATTATTTAAAAATTT+AGG - chr1_4:19694995-19695014 None:intergenic 5.0%
!!! ATTTTTAAATAATTTGTATT+TGG + chr1_4:19694997-19695016 Msa0154890:intron 5.0%
!!! TTTTTAAATAATTTGTATTT+GGG + chr1_4:19694998-19695017 Msa0154890:intron 5.0%
!! AATAAAAATAAATTAATTCA+AGG - chr1_4:19695199-19695218 None:intergenic 5.0%
!!! GATTTTTTATTTATTAAAAT+AGG + chr1_4:19695926-19695945 Msa0154890:intron 5.0%
!!! AAAATTATTTTAAATTTTCT+TGG + chr1_4:19696060-19696079 Msa0154890:intron 5.0%
!! TATATTATATTTATATATAC+TGG - chr1_4:19699178-19699197 None:intergenic 5.0%
TCATCCCAACTCATCTACCG+CGG + chr1_4:19689806-19689825 Msa0154890:CDS 50.0%
GATTCCGCGGTAGATGAGTT+GGG - chr1_4:19689813-19689832 None:intergenic 50.0%
! GGAGTAAAGGATCGATTCCG+CGG - chr1_4:19689826-19689845 None:intergenic 50.0%
! GACAGGAGCAGGTTTAGGAT+CGG - chr1_4:19689924-19689943 None:intergenic 50.0%
GTAGTGACAGGAGCAGGTTT+AGG - chr1_4:19689929-19689948 None:intergenic 50.0%
CCGTCAACGGTTCTTCTTCA+AGG + chr1_4:19689948-19689967 Msa0154890:CDS 50.0%
AGAGACACCGTTGACAGGTT+TGG - chr1_4:19689984-19690003 None:intergenic 50.0%
AAACCTGTCAACGGTGTCTC+TGG + chr1_4:19689983-19690002 Msa0154890:CDS 50.0%
AACCTGTCAACGGTGTCTCT+GGG + chr1_4:19689984-19690003 Msa0154890:CDS 50.0%
CTGCACAATGCGAGTTGCAA+CGG - chr1_4:19690869-19690888 None:intergenic 50.0%
!! GTTTTCTTTCTCGGGTTGCG+TGG + chr1_4:19690908-19690927 Msa0154890:CDS 50.0%
CTTGACGTGGTGGTCATTGT+CGG + chr1_4:19691002-19691021 Msa0154890:intron 50.0%
! ATAGATCGGGTTGCGTACAC+AGG + chr1_4:19691314-19691333 Msa0154890:intron 50.0%
CCTAAGGGTAGACCGCAATT+AGG - chr1_4:19691653-19691672 None:intergenic 50.0%
CCTAATTGCGGTCTACCCTT+AGG + chr1_4:19691650-19691669 Msa0154890:intron 50.0%
! GCCGATATTAAGGCGCCTAA+GGG - chr1_4:19691668-19691687 None:intergenic 50.0%
! TGCCGATATTAAGGCGCCTA+AGG - chr1_4:19691669-19691688 None:intergenic 50.0%
GCGCCTTAATATCGGCACTT+GGG + chr1_4:19691672-19691691 Msa0154890:intron 50.0%
GGTGCTAGAGGATGCAATGA+AGG - chr1_4:19691701-19691720 None:intergenic 50.0%
GCAGTTCTCACCTTACAAGC+TGG + chr1_4:19691760-19691779 Msa0154890:intron 50.0%
GCTGCAGGTGACAGTATATC+AGG - chr1_4:19691994-19692013 None:intergenic 50.0%
TGCAACTCTGTCATTGCTGC+AGG - chr1_4:19692009-19692028 None:intergenic 50.0%
! TTTTGTTCTTGGTGGGGGTG+GGG + chr1_4:19692483-19692502 Msa0154890:intron 50.0%
AAGAGGAACTTGGTCAGCCA+TGG + chr1_4:19692568-19692587 Msa0154890:CDS 50.0%
ATATGCAGCATCTCTCGGAC+AGG + chr1_4:19692744-19692763 Msa0154890:intron 50.0%
GAAGAGCCAAACCAAGGTTC+CGG - chr1_4:19692867-19692886 None:intergenic 50.0%
TAGGTCTCCATTGACGTGGT+TGG + chr1_4:19693055-19693074 Msa0154890:intron 50.0%
AGGTCTCCATTGACGTGGTT+GGG + chr1_4:19693056-19693075 Msa0154890:intron 50.0%
AACCAACCCAACCACGTCAA+TGG - chr1_4:19693065-19693084 None:intergenic 50.0%
GATGAAGAAAGACCTGCCAC+AGG + chr1_4:19693162-19693181 Msa0154890:CDS 50.0%
TTATTGGACTCACCTGTGGC+AGG - chr1_4:19693177-19693196 None:intergenic 50.0%
GGAGGCCGATTAATGTGTTG+TGG - chr1_4:19693369-19693388 None:intergenic 50.0%
CGGACAAGTCCTGACTTACA+TGG + chr1_4:19693467-19693486 Msa0154890:intron 50.0%
ACGGACGATCCATGTAAGTC+AGG - chr1_4:19693479-19693498 None:intergenic 50.0%
GGACGTGTGGGAAGTTGTAA+AGG - chr1_4:19694095-19694114 None:intergenic 50.0%
ACGGAGCATGGAGAAACAGA+GGG - chr1_4:19694180-19694199 None:intergenic 50.0%
AACGGAGCATGGAGAAACAG+AGG - chr1_4:19694181-19694200 None:intergenic 50.0%
GGTCCTCTAAATTCAGGGAC+TGG + chr1_4:19695019-19695038 Msa0154890:intron 50.0%
TTTCATGCTGATCCTCACCC+GGG + chr1_4:19695246-19695265 Msa0154890:CDS 50.0%
CTATGGCTGGATAATCCCGA+TGG - chr1_4:19696603-19696622 None:intergenic 50.0%
GCTTGCAAAGGTCTTTGACC+AGG + chr1_4:19696687-19696706 Msa0154890:CDS 50.0%
!! ACCAGGCTTTAGAAGGTGGA+GGG + chr1_4:19696704-19696723 Msa0154890:CDS 50.0%
AATTAGGGCTATCGGGGTTC+TGG + chr1_4:19696819-19696838 Msa0154890:CDS 50.0%
ATGCCTTCAAGGTTTAGGGG+AGG + chr1_4:19697204-19697223 Msa0154890:intron 50.0%
TGCCTTCAAGGTTTAGGGGA+GGG + chr1_4:19697205-19697224 Msa0154890:intron 50.0%
ATCCCTCCCCTAAACCTTGA+AGG - chr1_4:19697210-19697229 None:intergenic 50.0%
! TCTTGACGGATGAATCCCCT+CGG + chr1_4:19697518-19697537 Msa0154890:CDS 50.0%
! TAAAGCACTCCTTAGCCGAG+GGG - chr1_4:19697536-19697555 None:intergenic 50.0%
! GTAAAGCACTCCTTAGCCGA+GGG - chr1_4:19697537-19697556 None:intergenic 50.0%
! ATCCTCTCCACCTCCACTTT+TGG - chr1_4:19697647-19697666 None:intergenic 50.0%
GAGGTGGAGAGGATCTGAAA+GGG + chr1_4:19697653-19697672 Msa0154890:CDS 50.0%
! AAAGGGAGTATGGCTGAGCT+TGG + chr1_4:19697670-19697689 Msa0154890:CDS 50.0%
! AAGGGAGTATGGCTGAGCTT+GGG + chr1_4:19697671-19697690 Msa0154890:CDS 50.0%
CCGGCAAGAGATATTCTGAC+CGG - chr1_4:19697708-19697727 None:intergenic 50.0%
CCGGTCAGAATATCTCTTGC+CGG + chr1_4:19697705-19697724 Msa0154890:CDS 50.0%
CGGTCAGAATATCTCTTGCC+GGG + chr1_4:19697706-19697725 Msa0154890:CDS 50.0%
!! AGGGCATTGATGCTGTGACA+AGG + chr1_4:19698599-19698618 Msa0154890:CDS 50.0%
!! GGGCATTGATGCTGTGACAA+GGG + chr1_4:19698600-19698619 Msa0154890:CDS 50.0%
!! ATGGTGGGTATAAGAGCTGC+GGG - chr1_4:19698712-19698731 None:intergenic 50.0%
ATTTGTCTGTGGGTGGCCTT+AGG + chr1_4:19698946-19698965 Msa0154890:intron 50.0%
GCAACACTGGCAGAAGTTCT+TGG - chr1_4:19698994-19699013 None:intergenic 50.0%
AGAACTTCTGCCAGTGTTGC+CGG + chr1_4:19698994-19699013 Msa0154890:CDS 50.0%
CGATTCCGCGGTAGATGAGT+TGG - chr1_4:19689814-19689833 None:intergenic 55.0%
GAATGGGACGAGCGGAGTAA+AGG - chr1_4:19689839-19689858 None:intergenic 55.0%
GTTGTTGTGGCGGTGGGAAT+GGG - chr1_4:19689855-19689874 None:intergenic 55.0%
CGGAGATACGGTTAGAACGC+CGG - chr1_4:19689892-19689911 None:intergenic 55.0%
! TTTAGGATCGGTGGCGACAG+CGG - chr1_4:19689912-19689931 None:intergenic 55.0%
! AGGAGCAGGTTTAGGATCGG+TGG - chr1_4:19689921-19689940 None:intergenic 55.0%
TTGACGGTAGTGACAGGAGC+AGG - chr1_4:19689935-19689954 None:intergenic 55.0%
GCTCCTGTCACTACCGTCAA+CGG + chr1_4:19689935-19689954 Msa0154890:CDS 55.0%
GAACCGTTGACGGTAGTGAC+AGG - chr1_4:19689941-19689960 None:intergenic 55.0%
ACACCGTTGACAGGTTTGGC+AGG - chr1_4:19689980-19689999 None:intergenic 55.0%
ACCTGTCAACGGTGTCTCTG+GGG + chr1_4:19689985-19690004 Msa0154890:CDS 55.0%
AGGGTAGACCGCAATTAGGG+TGG - chr1_4:19691649-19691668 None:intergenic 55.0%
GGCGCCTTAATATCGGCACT+TGG + chr1_4:19691671-19691690 Msa0154890:intron 55.0%
TAGCCCTGGCAACCTCATTC+TGG - chr1_4:19691900-19691919 None:intergenic 55.0%
TTTGTTCTTGGTGGGGGTGG+GGG + chr1_4:19692484-19692503 Msa0154890:intron 55.0%
ATGGTCTGGAAAGCTACCGG+CGG - chr1_4:19692631-19692650 None:intergenic 55.0%
GGTATATAAGGGCCGCCTGA+AGG + chr1_4:19692765-19692784 Msa0154890:CDS 55.0%
AAGGGCCGCCTGAAGGAAAA+TGG + chr1_4:19692772-19692791 Msa0154890:CDS 55.0%
AGGGCCGCCTGAAGGAAAAT+GGG + chr1_4:19692773-19692792 Msa0154890:CDS 55.0%
CTCCATTGACGTGGTTGGGT+TGG + chr1_4:19693060-19693079 Msa0154890:CDS 55.0%
!! TGGTTGGGTTGGTTGACGAG+TGG + chr1_4:19693071-19693090 Msa0154890:CDS 55.0%
!! GGTTGGGTTGGTTGACGAGT+GGG + chr1_4:19693072-19693091 Msa0154890:CDS 55.0%
AGGACTTGTCCGTTGAGAGC+AGG - chr1_4:19693459-19693478 None:intergenic 55.0%
TTAGAGCGTGCGTCACACAG+AGG - chr1_4:19693536-19693555 None:intergenic 55.0%
!! AAAGAGCGTGGTGGACGTGT+GGG - chr1_4:19694107-19694126 None:intergenic 55.0%
TTCATGCTGATCCTCACCCG+GGG + chr1_4:19695247-19695266 Msa0154890:CDS 55.0%
GAGTGCGGATCATATTCCCC+GGG - chr1_4:19695266-19695285 None:intergenic 55.0%
GGAGTGCGGATCATATTCCC+CGG - chr1_4:19695267-19695286 None:intergenic 55.0%
!! GACCAGGCTTTAGAAGGTGG+AGG + chr1_4:19696703-19696722 Msa0154890:CDS 55.0%
!! CCAGGCTTTAGAAGGTGGAG+GGG + chr1_4:19696705-19696724 Msa0154890:CDS 55.0%
! CGTAAAGCACTCCTTAGCCG+AGG - chr1_4:19697538-19697557 None:intergenic 55.0%
ACAGCTGCCAAAAGTGGAGG+TGG + chr1_4:19697637-19697656 Msa0154890:CDS 55.0%
TGCCAAAAGTGGAGGTGGAG+AGG + chr1_4:19697642-19697661 Msa0154890:CDS 55.0%
GGAGGTGGAGAGGATCTGAA+AGG + chr1_4:19697652-19697671 Msa0154890:CDS 55.0%
ATCTCAACAACCGCAGCCAG+TGG + chr1_4:19697744-19697763 Msa0154890:CDS 55.0%
AACCGCAGCCAGTGGAAACA+CGG + chr1_4:19697752-19697771 Msa0154890:CDS 55.0%
CTTAAGCGCCATAGGCAGCA+TGG - chr1_4:19698354-19698373 None:intergenic 55.0%
! GGCTTGAAGCGTCCAATGGT+AGG - chr1_4:19698691-19698710 None:intergenic 55.0%
GTGCTGGAGTTCTTGACTGC+AGG + chr1_4:19698772-19698791 Msa0154890:CDS 55.0%
GAACTTCTGCCAGTGTTGCC+GGG + chr1_4:19698995-19699014 Msa0154890:CDS 55.0%
GGTTGTTGTGGCGGTGGGAA+TGG - chr1_4:19689856-19689875 None:intergenic 60.0%
AGGGAGGTTGTTGTGGCGGT+GGG - chr1_4:19689861-19689880 None:intergenic 60.0%
GGAGAGGGAGGTTGTTGTGG+CGG - chr1_4:19689865-19689884 None:intergenic 60.0%
GACGGAGAGGGAGGTTGTTG+TGG - chr1_4:19689868-19689887 None:intergenic 60.0%
TACGGTTAGAACGCCGGCGA+CGG - chr1_4:19689886-19689905 None:intergenic 60.0%
CCGTTGACAGGTTTGGCAGG+CGG - chr1_4:19689977-19689996 None:intergenic 60.0%
CCGCCTGCCAAACCTGTCAA+CGG + chr1_4:19689974-19689993 Msa0154890:CDS 60.0%
ACCCCAGAGACACCGTTGAC+AGG - chr1_4:19689989-19690008 None:intergenic 60.0%
ATGCGAGTTGCAACGGAGCG+AGG - chr1_4:19690862-19690881 None:intergenic 60.0%
! TTCTCGGGTTGCGTGGGATG+TGG + chr1_4:19690915-19690934 Msa0154890:CDS 60.0%
GCTTGCGTGCACTCTTGACG+TGG + chr1_4:19690989-19691008 Msa0154890:intron 60.0%
TGCGTGCACTCTTGACGTGG+TGG + chr1_4:19690992-19691011 Msa0154890:intron 60.0%
GACGTGGTGGTCATTGTCGG+TGG + chr1_4:19691005-19691024 Msa0154890:intron 60.0%
TTGTTCTTGGTGGGGGTGGG+GGG + chr1_4:19692485-19692504 Msa0154890:intron 60.0%
TCAACCTCTCCCATTGCCGC+CGG + chr1_4:19692612-19692631 Msa0154890:CDS 60.0%
GGAAAGCTACCGGCGGCAAT+GGG - chr1_4:19692624-19692643 None:intergenic 60.0%
TGGAAAGCTACCGGCGGCAA+TGG - chr1_4:19692625-19692644 None:intergenic 60.0%
GGGCCGCCTGAAGGAAAATG+GGG + chr1_4:19692774-19692793 Msa0154890:CDS 60.0%
!! GAAAGAGCGTGGTGGACGTG+TGG - chr1_4:19694108-19694127 None:intergenic 60.0%
CGGATCATATTCCCCGGGTG+AGG - chr1_4:19695261-19695280 None:intergenic 60.0%
!! CCCCTCCACCTTCTAAAGCC+TGG - chr1_4:19696708-19696727 None:intergenic 60.0%
!! AGGGCTATCGGGGTTCTGGA+AGG + chr1_4:19696823-19696842 Msa0154890:CDS 60.0%
!! GGGCTATCGGGGTTCTGGAA+GGG + chr1_4:19696824-19696843 Msa0154890:CDS 60.0%
CGGATGAATCCCCTCGGCTA+AGG + chr1_4:19697524-19697543 Msa0154890:CDS 60.0%
ACCGCAGCCAGTGGAAACAC+GGG + chr1_4:19697753-19697772 Msa0154890:CDS 60.0%
! TGCGGGCTTGAAGCGTCCAA+TGG - chr1_4:19698695-19698714 None:intergenic 60.0%
GCAGAAATGCCCGGCAACAC+TGG - chr1_4:19699007-19699026 None:intergenic 60.0%
GAGGGAGGTTGTTGTGGCGG+TGG - chr1_4:19689862-19689881 None:intergenic 65.0%
ACAACCTCCCTCTCCGTCGC+CGG + chr1_4:19689870-19689889 Msa0154890:CDS 65.0%
TAGAACGCCGGCGACGGAGA+GGG - chr1_4:19689880-19689899 None:intergenic 65.0%
TTAGAACGCCGGCGACGGAG+AGG - chr1_4:19689881-19689900 None:intergenic 65.0%
CGGTGGCGACAGCGGAGATA+CGG - chr1_4:19689904-19689923 None:intergenic 65.0%
TGTTCTTGGTGGGGGTGGGG+GGG + chr1_4:19692486-19692505 Msa0154890:intron 65.0%
! GCCCGTGTTTCCACTGGCTG+CGG - chr1_4:19697757-19697776 None:intergenic 65.0%
AGGGCTGCCCGTGTTTCCAC+TGG - chr1_4:19697763-19697782 None:intergenic 65.0%
GGCTCCTGCCATGCTGCCTA+TGG + chr1_4:19698343-19698362 Msa0154890:intron 65.0%
AGCGCCATAGGCAGCATGGC+AGG - chr1_4:19698350-19698369 None:intergenic 65.0%
GGCGGTGGGAATGGGACGAG+CGG - chr1_4:19689847-19689866 None:intergenic 70.0%
GTTCTTGGTGGGGGTGGGGG+GGG + chr1_4:19692487-19692506 Msa0154890:intron 70.0%
GCTACCGGCGGCAATGGGAG+AGG - chr1_4:19692619-19692638 None:intergenic 70.0%
AACGCCGGCGACGGAGAGGG+AGG - chr1_4:19689877-19689896 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 19689687 19699310 19689687 ID=Msa0154890;Name=Msa0154890
chr1_4 mRNA 19689687 19699310 19689687 ID=Msa0154890-mRNA-1;Parent=Msa0154890;Name=Msa0154890-mRNA-1;_AED=0.22;_eAED=0.22;_QI=83|0.92|0.92|1|0.92|0.85|14|208|829
chr1_4 exon 19689687 19689718 19689687 ID=Msa0154890-mRNA-1:exon:7243;Parent=Msa0154890-mRNA-1
chr1_4 exon 19689743 19690006 19689743 ID=Msa0154890-mRNA-1:exon:7244;Parent=Msa0154890-mRNA-1
chr1_4 exon 19690098 19690247 19690098 ID=Msa0154890-mRNA-1:exon:7245;Parent=Msa0154890-mRNA-1
chr1_4 exon 19690787 19690957 19690787 ID=Msa0154890-mRNA-1:exon:7246;Parent=Msa0154890-mRNA-1
chr1_4 exon 19691901 19692044 19691901 ID=Msa0154890-mRNA-1:exon:7247;Parent=Msa0154890-mRNA-1
chr1_4 exon 19692528 19692633 19692528 ID=Msa0154890-mRNA-1:exon:7248;Parent=Msa0154890-mRNA-1
chr1_4 exon 19692752 19692900 19692752 ID=Msa0154890-mRNA-1:exon:7249;Parent=Msa0154890-mRNA-1
chr1_4 exon 19693058 19693183 19693058 ID=Msa0154890-mRNA-1:exon:7250;Parent=Msa0154890-mRNA-1
chr1_4 exon 19694333 19694476 19694333 ID=Msa0154890-mRNA-1:exon:7251;Parent=Msa0154890-mRNA-1
chr1_4 exon 19695228 19695315 19695228 ID=Msa0154890-mRNA-1:exon:7252;Parent=Msa0154890-mRNA-1
chr1_4 exon 19696401 19696909 19696401 ID=Msa0154890-mRNA-1:exon:7253;Parent=Msa0154890-mRNA-1
chr1_4 exon 19697514 19697837 19697514 ID=Msa0154890-mRNA-1:exon:7254;Parent=Msa0154890-mRNA-1
chr1_4 exon 19698592 19698822 19698592 ID=Msa0154890-mRNA-1:exon:7255;Parent=Msa0154890-mRNA-1
chr1_4 exon 19698968 19699310 19698968 ID=Msa0154890-mRNA-1:exon:7256;Parent=Msa0154890-mRNA-1
chr1_4 five_prime_UTR 19689687 19689718 19689687 ID=Msa0154890-mRNA-1:five_prime_utr;Parent=Msa0154890-mRNA-1
chr1_4 five_prime_UTR 19689743 19689793 19689743 ID=Msa0154890-mRNA-1:five_prime_utr;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19689794 19690006 19689794 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19690098 19690247 19690098 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19690787 19690957 19690787 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19691901 19692044 19691901 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19692528 19692633 19692528 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19692752 19692900 19692752 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19693058 19693183 19693058 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19694333 19694476 19694333 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19695228 19695315 19695228 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19696401 19696909 19696401 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19697514 19697837 19697514 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19698592 19698822 19698592 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 CDS 19698968 19699102 19698968 ID=Msa0154890-mRNA-1:cds;Parent=Msa0154890-mRNA-1
chr1_4 three_prime_UTR 19699103 19699310 19699103 ID=Msa0154890-mRNA-1:three_prime_utr;Parent=Msa0154890-mRNA-1
Gene Sequence

>Msa0154890

ATGGATACAGCATCATCCCAACTCATCTACCGCGGAATCGATCCTTTACTCCGCTCGTCCCATTCCCACCGCCACAACAACCTCCCTCTCCGTCGCCGGCGTTCTAACCGTATCTCCGCTGTCGCCACCGATCCTAAACCTGCTCCTGTCACTACCGTCAACGGTTCTTCTTCAAGGTCTCCGCCTGCCAAACCTGTCAACGGTGTCTCTGGGAGAATTGGTGATGTTTCGAAGGAGATTAAGAGAGTGAGAGCGCAAATGGAAGAAGATGAACAATTGGCAAGTCTTATGAGAGGTCTTCGTGGTCAGAGTCTTAATGATTCGCTCTTTGCTGAGGATGATGTTCAACTACGACTTGTTGAGGTAGATGAAAGTAGTGAATTTCTACCATTGGTGTATGATCCAGCTAGTATTACTGCATATTGGGGAAAACGTCCTCGCTCCGTTGCAACTCGCATTGTGCAGTTATTATCTGTTGCTGGAGGTTTTCTTTCTCGGGTTGCGTGGGATGTGGTTAACAAGAAGGTTAAAGAGAATGAGGTTGCCAGGGCTATTGAAATACGTGAAATTGTGACATCTTTGGGTCCAGCATACATAAAACTTGGGCAAGCATTGAGCATACGACCTGATATACTGTCACCTGCAGCAATGACAGAGTTGCAGAAGCTCTGTGATAAAGTTCCTTCATTTGCAGATGATGTGGCTATGGCTCTAATTGAAGAGGAACTTGGTCAGCCATGGCAAAATGTCTATTCTGAATTATCAACCTCTCCCATTGCCGCCGCATCTCTCGGACAGGTATATAAGGGCCGCCTGAAGGAAAATGGGGATTTGGTTGCTGTTAAAGTGCAAAGACCTTTTGTTCTCGAGACAGTTACCATTGATTTATTTATTATCCGGAACCTTGGTTTGGCTCTTCGAAAATTTCCTCAGGTCTCCATTGACGTGGTTGGGTTGGTTGACGAGTGGGCTGCTAGATTTTTTGAAGAGTTAGACTATGTGAATGAAGGTGAAAATGGAGACCGCTTCGCCGAAATGATGAAGAAAGACCTGCCACAGGTTGTAATACCAAGAACTTACAGCAAGTATACATCAAGGAGGGTTCTTACAACAGAATGGATTGACGGAGAGAAGCTGTCACAGAGCAAAGAAAGCAATGTCGGAGAATTAGTTAATGTTGGAGTTATCTGCTACCTAAAACAGCTGCTTGATACTGGCTTTTTTCATGCTGATCCTCACCCGGGGAATATGATCCGCACTCCTGATGGAAAACTTGCAATACTTGACTTTGATATTGTTCATTGGAATGTTCCAGTTGTCTTGATCAACTTCATTGCTTTTTCCTGGACGCCACTAATGTTTAATTTCTTTTATACCACTGTCCTAATCATTGTGATAAATGATGGAAATCTTTTGTTGCACCTAGGGCTTGTTACAAAATTGACCGATGATCAAAAGTATGGAATGATCGAAGCAATTGCTCATCTCATCCATCGGGATTATCCAGCCATAGTGAAAGACTTCGTTAAACTTGGTTTCATCCCAGATGGAGTCAATTTAGATCCTATCTTGCCAGTGCTTGCAAAGGTCTTTGACCAGGCTTTAGAAGGTGGAGGGGCAAAAAACATCAATTTTCAGGAGCTGGCATCAGATTTAGCACAAATTACCTTTGATTATCCTTTTAGGATACCCCCATACTTTGCCCTTATAATTAGGGCTATCGGGGTTCTGGAAGGGATAGCTTTAGTAGGAAATCCTGATTTTGCCATTGTTGATGAAGCCTATCCATATATTGCACAGAGACTCTTGACGGATGAATCCCCTCGGCTAAGGAGTGCTTTACGTTACACTATATATGGGAAATCTGGAGTTTTCGATGCTGAAAGATTTATTGATGTCATGCAAGCCTTCGAGAATTTTATTACAGCTGCCAAAAGTGGAGGTGGAGAGGATCTGAAAGGGAGTATGGCTGAGCTTGGGCTTATTACTAACCGGTCAGAATATCTCTTGCCGGGATTCCAGTCTGTAACATCTCAACAACCGCAGCCAGTGGAAACACGGGCAGCCCTAGCATTTTTGCTGTCTGATAAGGGGAATTTTTTCCGTGAATTTCTTTTGGACGAGATTGTCAAGGGCATTGATGCTGTGACAAGGGAACAAATGGTAAGAATTATGTCCTTACTAGGAGTTCAGAATGCAAGCCCTATTTTCGGTATGGTACCTACCATTGGACGCTTCAAGCCCGCAGCTCTTATACCCACCATAACTGAAGAGGATAAAGTTATACTGAACAATGTCCAGAAAGTGCTGGAGTTCTTGACTGCAGGAAGCACTCTGTCAAGCACATCTAGTCAGGCTCTCAATGTTCCTCAGATTATCCAAGAACTTCTGCCAGTGTTGCCGGGCATTTCTGCTAAAGTGCTTCCTGATGTTCTTAGCAGATTATCTTCTCGGGTATTAGCGCGATTAATCCGTGATGCATTTTTGTAA
Protein sequence

>Msa0154890

MDTASSQLIYRGIDPLLRSSHSHRHNNLPLRRRRSNRISAVATDPKPAPVTTVNGSSSRSPPAKPVNGVSGRIGDVSKEIKRVRAQMEEDEQLASLMRGLRGQSLNDSLFAEDDVQLRLVEVDESSEFLPLVYDPASITAYWGKRPRSVATRIVQLLSVAGGFLSRVAWDVVNKKVKENEVARAIEIREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFADDVAMALIEEELGQPWQNVYSELSTSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGDRFAEMMKKDLPQVVIPRTYSKYTSRRVLTTEWIDGEKLSQSKESNVGELVNVGVICYLKQLLDTGFFHADPHPGNMIRTPDGKLAILDFDIVHWNVPVVLINFIAFSWTPLMFNFFYTTVLIIVINDGNLLLHLGLVTKLTDDQKYGMIEAIAHLIHRDYPAIVKDFVKLGFIPDGVNLDPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLKGSMAELGLITNRSEYLLPGFQSVTSQQPQPVETRAALAFLLSDKGNFFREFLLDEIVKGIDAVTREQMVRIMSLLGVQNASPIFGMVPTIGRFKPAALIPTITEEDKVILNNVQKVLEFLTAGSTLSSTSSQALNVPQIIQELLPVLPGISAKVLPDVLSRLSSRVLARLIRDAFL*