AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0154880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154880 MtrunA17_Chr1g0169361 98.371 491 8 0 1 491 1 491 0.0 988
Msa0154880 MtrunA17_Chr4g0012061 43.562 365 199 3 132 490 100 463 3.18e-104 327
Msa0154880 MtrunA17_Chr7g0230671 42.896 366 202 3 132 491 88 452 8.15e-96 304
Msa0154880 MtrunA17_Chr6g0465161 41.808 354 202 2 133 486 78 427 3.27e-93 298
Msa0154880 MtrunA17_Chr3g0136721 42.056 321 170 4 183 488 134 453 1.34e-80 265
Msa0154880 MtrunA17_Chr1g0148121 39.710 345 194 4 148 482 95 435 1.58e-75 250
Msa0154880 MtrunA17_Chr1g0199921 34.359 390 224 8 129 489 135 521 2.23e-62 218
Msa0154880 MtrunA17_Chr3g0120791 36.986 292 168 5 187 467 204 490 2.37e-51 186
Msa0154880 MtrunA17_Chr8g0382921 35.570 298 177 7 187 472 198 492 4.11e-49 179
Msa0154880 MtrunA17_Chr3g0129101 34.405 311 187 7 174 472 196 501 1.81e-48 178
Msa0154880 MtrunA17_Chr5g0428451 27.044 318 215 5 185 489 126 439 1.13e-32 130
Msa0154880 MtrunA17_Chr4g0057941 29.097 299 172 10 177 449 62 346 2.31e-29 120
Msa0154880 MtrunA17_Chr1g0147481 26.629 353 222 11 142 468 80 421 2.20e-24 107
Msa0154880 MtrunA17_Chr3g0113361 27.660 329 189 9 174 467 76 390 3.48e-22 99.8
Msa0154880 MtrunA17_Chr4g0048521 26.804 291 178 7 195 455 229 514 8.99e-22 99.0
Msa0154880 MtrunA17_Chr8g0360981 25.000 288 187 6 187 446 210 496 3.11e-19 90.9
Msa0154880 MtrunA17_Chr2g0281061 25.342 292 194 6 187 455 218 508 3.54e-19 90.9
Msa0154880 MtrunA17_Chr5g0433911 26.449 276 172 9 198 455 77 339 8.42e-19 89.4
Msa0154880 MtrunA17_Chr1g0193751 25.874 286 188 10 197 469 240 514 7.56e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154880 AT3G24190.1 81.563 499 84 3 1 491 1 499 0.0 803
Msa0154880 AT1G79600.1 42.466 365 203 3 132 490 95 458 8.04e-100 315
Msa0154880 AT1G71810.1 40.054 367 209 5 121 486 62 418 3.57e-88 285
Msa0154880 AT5G24970.3 40.909 330 169 4 183 487 136 464 7.06e-79 261
Msa0154880 AT5G24970.2 40.909 330 169 4 183 487 175 503 3.48e-78 259
Msa0154880 AT4G31390.1 39.474 342 199 3 148 482 131 471 8.13e-76 251
Msa0154880 AT5G24970.1 40.000 330 169 5 183 487 136 461 1.50e-74 249
Msa0154880 AT4G31390.2 36.257 342 185 3 148 482 131 446 2.75e-65 223
Msa0154880 AT2G39190.2 35.325 385 222 7 129 489 142 523 9.78e-63 219
Msa0154880 AT4G31390.3 41.392 273 152 3 217 482 1 272 1.84e-62 211
Msa0154880 AT3G07700.1 35.691 311 182 6 169 466 171 476 6.80e-51 184
Msa0154880 AT3G07700.2 35.691 311 182 6 169 466 171 476 6.80e-51 184
Msa0154880 AT3G07700.4 35.691 311 182 6 169 466 171 476 6.80e-51 184
Msa0154880 AT3G07700.3 35.691 311 182 6 169 466 171 476 1.56e-50 184
Msa0154880 AT5G64940.1 36.577 298 174 7 187 472 222 516 7.34e-49 179
Msa0154880 AT5G64940.2 36.577 298 174 7 187 472 222 516 7.34e-49 179
Msa0154880 AT2G39190.1 36.564 227 137 5 129 352 142 364 8.39e-34 131
Msa0154880 AT5G05200.1 28.931 318 205 5 187 489 129 440 2.92e-33 132
Msa0154880 AT4G24810.4 28.070 285 183 7 177 443 16 296 1.22e-31 124
Msa0154880 AT4G24810.5 28.070 285 183 7 177 443 16 296 2.00e-31 123
Msa0154880 AT4G24810.6 26.861 309 204 7 177 467 16 320 2.08e-31 126
Msa0154880 AT4G24810.1 26.861 309 204 7 177 467 16 320 2.08e-31 126
Msa0154880 AT4G24810.2 26.861 309 204 7 177 467 59 363 3.90e-31 126
Msa0154880 AT4G24810.3 26.582 316 203 8 177 467 16 327 1.02e-29 121
Msa0154880 AT5G50330.1 24.590 305 205 5 184 468 65 364 1.52e-27 115
Msa0154880 AT1G65950.2 33.871 248 141 11 198 431 113 351 3.68e-26 111
Msa0154880 AT1G65950.1 33.871 248 141 11 198 431 113 351 8.36e-26 111
Msa0154880 AT5G24810.1 28.387 310 185 9 184 468 98 395 9.60e-23 102
Msa0154880 AT5G50330.2 22.623 305 195 6 184 468 65 348 1.24e-21 97.8
Msa0154880 AT2G40090.1 29.560 318 195 11 175 467 79 392 2.37e-21 97.4
Msa0154880 AT1G61640.3 26.316 285 177 7 195 449 221 502 1.89e-20 95.1
Msa0154880 AT1G61640.1 26.316 285 177 7 195 449 221 502 3.19e-20 94.4
Msa0154880 AT1G11390.1 23.988 321 210 6 195 486 224 539 3.24e-20 94.4
Msa0154880 AT5G24810.2 26.686 341 182 11 184 468 98 426 1.53e-19 92.8
Msa0154880 AT4G01660.1 27.304 293 175 11 197 469 238 512 1.82e-16 82.8
Msa0154880 AT1G61640.2 26.442 208 134 7 195 389 221 422 2.32e-11 66.2

Find 136 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAGTATTACTGCATATT+GGG 0.247428 1_4:+19678702 Msa0154880:CDS
ATCTCTCGGACAGGTATATA+AGG 0.270512 1_4:+19680628 Msa0154880:CDS
AAACCTGTCAACGGTGTCTC+TGG 0.278838 1_4:+19677932 Msa0154880:CDS
AAGGGCCGCCTGAAGGAAAA+TGG 0.288141 1_4:+19680647 Msa0154880:CDS
CAGCTAGTATTACTGCATAT+TGG 0.297042 1_4:+19678701 Msa0154880:CDS
ACGTGAAATTGTGACATCTT+TGG 0.305343 1_4:+19679802 Msa0154880:CDS
GGTTGTTGTGGCGGTGGGAA+TGG 0.314697 1_4:-19677802 None:intergenic
GTATACTTGCTGTAAGTTCT+TGG 0.331390 1_4:-19682205 None:intergenic
CGTGAAATTGTGACATCTTT+GGG 0.332945 1_4:+19679803 Msa0154880:CDS
TTTATTTGCATTCAGAGAAT+TGG 0.338434 1_4:+19678026 Msa0154880:intron
GTTGTTGTGGCGGTGGGAAT+GGG 0.338778 1_4:-19677801 None:intergenic
GAGATCCTTCAGGAAAATTA+AGG 0.340644 1_4:+19685667 Msa0154880:CDS
GGATCTAAATTGACTCCATC+TGG 0.344181 1_4:-19684521 None:intergenic
TTATTTCAGCTGCTTGATAC+TGG 0.344397 1_4:+19683084 Msa0154880:intron
TTTAACGAAGTCTTTCACTA+TGG 0.351984 1_4:-19684486 None:intergenic
CCTGAAGGAAAATGGGGATT+TGG 0.353495 1_4:+19680655 Msa0154880:CDS
TTGACCGACGATCAAAAGTA+TGG 0.371660 1_4:+19684419 Msa0154880:CDS
CAGGTCTTTCTTCATCATTT+CGG 0.380540 1_4:-19681030 None:intergenic
CCATTGATTTATTCATTATC+CGG 0.385394 1_4:+19680720 Msa0154880:CDS
AGGTCTCCATTGACGTGGTT+GGG 0.391236 1_4:+19680931 Msa0154880:intron
ACGAAGTCTTTCACTATGGC+TGG 0.396425 1_4:-19684482 None:intergenic
GTGCAGTTATTATCTGTTGC+TGG 0.398582 1_4:+19678757 Msa0154880:CDS
TTTGCAAGCACTGGCAAGAT+AGG 0.409252 1_4:-19684542 None:intergenic
CCGTCAACGGTTCTTCTTCA+AGG 0.410112 1_4:+19677897 Msa0154880:CDS
GAGGGAGGTTGTTGTGGCGG+TGG 0.410846 1_4:-19677808 None:intergenic
CATTATCCGGAACCTTGGTT+TGG 0.410931 1_4:+19680733 Msa0154880:CDS
AGAGACACCGTTGACAGGTT+TGG 0.413955 1_4:-19677930 None:intergenic
TATGTGAATGAAGGTGAAAA+TGG 0.419960 1_4:+19680996 Msa0154880:CDS
TAAGAGAGTGAGAGCGCAAA+TGG 0.424054 1_4:+19678067 Msa0154880:CDS
TAGGTCTCCATTGACGTGGT+TGG 0.426485 1_4:+19680930 Msa0154880:intron
GTGGTGACAGGAGCAGGTTT+AGG 0.435550 1_4:-19677875 None:intergenic
TGGAAAGCTACCGGCGGCAA+TGG 0.437249 1_4:-19680497 None:intergenic
GGTCCAGCATACATAAAACT+TGG 0.438925 1_4:+19679824 Msa0154880:CDS
GGCTCTTCGAAAATTTCCTC+AGG 0.440365 1_4:+19680754 Msa0154880:CDS
GCTGCAGGTGACAGTATATC+AGG 0.453190 1_4:-19679866 None:intergenic
AATGGAAGAAGATGAACAAT+TGG 0.455274 1_4:+19678085 Msa0154880:CDS
AAACTTGCAATACTTGACTT+TGG 0.456974 1_4:+19683159 Msa0154880:CDS
GAAGAGCCAAACCAAGGTTC+CGG 0.457788 1_4:-19680739 None:intergenic
TTCTCGGGTTGCGTGGGATG+TGG 0.458420 1_4:+19678789 Msa0154880:CDS
TGCAACTCTGTCATTGCTGC+AGG 0.460173 1_4:-19679881 None:intergenic
ATAACCAGAATGAGGTTGCC+AGG 0.461543 1_4:+19679768 Msa0154880:intron
AGGGAGGTTGTTGTGGCGGT+GGG 0.465926 1_4:-19677807 None:intergenic
GTCGGAGAATTAGTTAATGT+TGG 0.469559 1_4:+19682295 Msa0154880:CDS
ATTTGCAGATGATGTGGCTA+TGG 0.471517 1_4:+19680411 Msa0154880:CDS
AGTCATCTGCTACCTAAAAC+AGG 0.471762 1_4:+19682318 Msa0154880:CDS
GTGAAAGACTTCGTTAAACT+TGG 0.475881 1_4:+19684491 Msa0154880:CDS
TTGACGGTGGTGACAGGAGC+AGG 0.477447 1_4:-19677881 None:intergenic
CTCCATTGACGTGGTTGGGT+TGG 0.481448 1_4:+19680935 Msa0154880:CDS
AGGGCCGCCTGAAGGAAAAT+GGG 0.482279 1_4:+19680648 Msa0154880:CDS
AACCAACCCAACCACGTCAA+TGG 0.482943 1_4:-19680937 None:intergenic
GTAACTGTCTCGAGAACAAA+AGG 0.487145 1_4:-19680698 None:intergenic
AACCTGTCAACGGTGTCTCT+GGG 0.487214 1_4:+19677933 Msa0154880:CDS
ACACCGTTGACAGGTTTGGC+AGG 0.488797 1_4:-19677926 None:intergenic
CGATTCCGCGGTAGATGAGT+TGG 0.493275 1_4:-19677760 None:intergenic
CCGGATAATGAATAAATCAA+TGG 0.495772 1_4:-19680720 None:intergenic
GAACCGTTGACGGTGGTGAC+AGG 0.499408 1_4:-19677887 None:intergenic
GGTTGGGTTGGTTGACGAGT+GGG 0.502534 1_4:+19680947 Msa0154880:CDS
CCGTATCTCCGCTGTCGCCA+CGG 0.503815 1_4:+19677850 Msa0154880:CDS
GGAAAGCTACCGGCGGCAAT+GGG 0.509268 1_4:-19680496 None:intergenic
GGAGGGTTCTTACAACAGAA+TGG 0.511423 1_4:+19682233 Msa0154880:CDS
TTCACGTATTTCAATAGCCC+TGG 0.512127 1_4:-19679786 None:intergenic
CAATATGCAGTAATACTAGC+TGG 0.516377 1_4:-19678700 None:intergenic
AATATGATCCGCACTCCTGA+TGG 0.516841 1_4:+19683135 Msa0154880:CDS
GCTCTAATTGAAGAGGAACT+TGG 0.518860 1_4:+19680433 Msa0154880:CDS
CCGTGGCGACAGCGGAGATA+CGG 0.520949 1_4:-19677850 None:intergenic
ACCCCAGAGACACCGTTGAC+AGG 0.523907 1_4:-19677935 None:intergenic
TCAAAGACCTTTGCAAGCAC+TGG 0.524525 1_4:-19684551 None:intergenic
TCTCTCGGACAGGTATATAA+GGG 0.528745 1_4:+19680629 Msa0154880:CDS
GACGGAGAGGGAGGTTGTTG+TGG 0.530054 1_4:-19677814 None:intergenic
TTATTCATTATCCGGAACCT+TGG 0.531153 1_4:+19680728 Msa0154880:CDS
TCCTTCATTTGCAGATGATG+TGG 0.531156 1_4:+19680405 Msa0154880:CDS
AATTGCTCATCTCATCCATC+GGG 0.532594 1_4:+19684454 Msa0154880:CDS
TTTCATGCTGATCCTCACCC+GGG 0.534686 1_4:+19683111 Msa0154880:CDS
GATTCCGCGGTAGATGAGTT+GGG 0.538602 1_4:-19677759 None:intergenic
GTGGGATGTGGTTAACAAGA+AGG 0.539335 1_4:+19678801 Msa0154880:CDS
GAGAATTGGTGATGTTTCGA+AGG 0.539608 1_4:+19678040 Msa0154880:intron
GCTACCGGCGGCAATGGGAG+AGG 0.540075 1_4:-19680491 None:intergenic
AAACTTGGTTTCATCCCAGA+TGG 0.540981 1_4:+19684506 Msa0154880:CDS
GCCACATCATCTGCAAATGA+AGG 0.542980 1_4:-19680406 None:intergenic
GAATGGGACGAGCGGAGTAA+AGG 0.543025 1_4:-19677785 None:intergenic
CCTTGAAGAAGAACCGTTGA+CGG 0.543371 1_4:-19677897 None:intergenic
GCTCCTGTCACCACCGTCAA+CGG 0.544211 1_4:+19677884 Msa0154880:CDS
GTATTGGACTCACCTGTGGC+AGG 0.546086 1_4:-19681049 None:intergenic
CCGCCTGCCAAACCTGTCAA+CGG 0.550645 1_4:+19677923 Msa0154880:CDS
TGGTTGGGTTGGTTGACGAG+TGG 0.551378 1_4:+19680946 Msa0154880:CDS
TCTTCATCATTTCGGCGAAG+CGG 0.553476 1_4:-19681022 None:intergenic
ATATGCAGCATCTCTCGGAC+AGG 0.554501 1_4:+19680619 Msa0154880:intron
AAGTAGTGAATTTCTACCAT+TGG 0.554621 1_4:+19678669 Msa0154880:CDS
CAATTGCTCATCTCATCCAT+CGG 0.555375 1_4:+19684453 Msa0154880:CDS
ACAACCTCCCTCTCCGTCGC+CGG 0.558871 1_4:+19677819 Msa0154880:CDS
GGTATATAAGGGCCGCCTGA+AGG 0.559240 1_4:+19680640 Msa0154880:CDS
CAGAGCAAAGAAAGCAATGT+CGG 0.560609 1_4:+19682277 Msa0154880:CDS
TAATGATTCACTCTTTGCTG+AGG 0.562844 1_4:+19678142 Msa0154880:CDS
GGTTAACAAGAAGGTTAAAG+AGG 0.566410 1_4:+19678810 Msa0154880:CDS
ATGCGAGTTGCAACGGAGCG+AGG 0.567245 1_4:-19678733 None:intergenic
CTGCACAATGCGAGTTGCAA+CGG 0.568797 1_4:-19678740 None:intergenic
CGGATCATATTCCCCGGGTG+AGG 0.570070 1_4:-19683123 None:intergenic
AACGCCGGCGACGGAGAGGG+AGG 0.573158 1_4:-19677823 None:intergenic
AAGAGGAACTTGGTCAGCCA+TGG 0.574058 1_4:+19680443 Msa0154880:CDS
GAAACATATGCAGCATCTCT+CGG 0.574141 1_4:+19680614 Msa0154880:intron
TAGAACGCCGGCGACGGAGA+GGG 0.580222 1_4:-19677826 None:intergenic
GGAGTGCGGATCATATTCCC+CGG 0.581565 1_4:-19683129 None:intergenic
CCGTTGACAGGTTTGGCAGG+CGG 0.583407 1_4:-19677923 None:intergenic
TACGGTTAGAACGCCGGCGA+CGG 0.585185 1_4:-19677832 None:intergenic
CTTACAACAGAATGGATTGA+CGG 0.585861 1_4:+19682241 Msa0154880:CDS
GATCTAAATTGACTCCATCT+GGG 0.588365 1_4:-19684520 None:intergenic
GGCTATGGCTCTAATTGAAG+AGG 0.600972 1_4:+19680426 Msa0154880:CDS
TCAACCTCTCCCATTGCCGC+CGG 0.601960 1_4:+19680487 Msa0154880:CDS
GGCGGTGGGAATGGGACGAG+CGG 0.606626 1_4:-19677793 None:intergenic
CGGAGATACGGTTAGAACGC+CGG 0.607587 1_4:-19677838 None:intergenic
GGAGAGGGAGGTTGTTGTGG+CGG 0.608879 1_4:-19677811 None:intergenic
TAACCAGAATGAGGTTGCCA+GGG 0.609399 1_4:+19679769 Msa0154880:intron
TGTTCAGCTACGTCTTGTTG+AGG 0.610684 1_4:+19678169 Msa0154880:CDS
CTATGGCTGGATAATCCCGA+TGG 0.613934 1_4:-19684469 None:intergenic
GCTAGTATTACTGCATATTG+GGG 0.615592 1_4:+19678703 Msa0154880:CDS
CAGTTATTATCTGTTGCTGG+AGG 0.617050 1_4:+19678760 Msa0154880:CDS
TATCTTGCCAGTGCTTGCAA+AGG 0.619857 1_4:+19684544 Msa0154880:CDS
GAGTTAGACTATGTGAATGA+AGG 0.620549 1_4:+19680987 Msa0154880:CDS
TTTAGGATCCGTGGCGACAG+CGG 0.620973 1_4:-19677858 None:intergenic
AGGAGCAGGTTTAGGATCCG+TGG 0.621321 1_4:-19677867 None:intergenic
GTCCAGCATACATAAAACTT+GGG 0.627157 1_4:+19679825 Msa0154880:CDS
ACCTGTCAACGGTGTCTCTG+GGG 0.632413 1_4:+19677934 Msa0154880:CDS
CTTACAGCAAGTATACATCA+AGG 0.633014 1_4:+19682212 Msa0154880:CDS
AGTCTTATGAGAGGTCTTCG+TGG 0.637623 1_4:+19678110 Msa0154880:CDS
GAGTGCGGATCATATTCCCC+GGG 0.640776 1_4:-19683128 None:intergenic
TTAGAACGCCGGCGACGGAG+AGG 0.642104 1_4:-19677827 None:intergenic
GATGAAGAAAGACCTGCCAC+AGG 0.643598 1_4:+19681037 Msa0154880:CDS
CTAGCTGGATCATACACCAA+TGG 0.649269 1_4:-19678685 None:intergenic
CAGCAAGTATACATCAAGGA+GGG 0.655370 1_4:+19682216 Msa0154880:CDS
GGGCCGCCTGAAGGAAAATG+GGG 0.676507 1_4:+19680649 Msa0154880:CDS
TTCATGCTGATCCTCACCCG+GGG 0.678599 1_4:+19683112 Msa0154880:CDS
GGAGTAAAGGATCGATTCCG+CGG 0.682638 1_4:-19677772 None:intergenic
CAATTGGCAAGTCTTATGAG+AGG 0.695083 1_4:+19678101 Msa0154880:CDS
ACAGCAAGTATACATCAAGG+AGG 0.696808 1_4:+19682215 Msa0154880:CDS
TCATCCCAACTCATCTACCG+CGG 0.706405 1_4:+19677755 Msa0154880:CDS
TGAAGAAGAACCGTTGACGG+TGG 0.718002 1_4:-19677894 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATAATTATTATAA+TGG - chr1_4:19682132-19682151 None:intergenic 0.0%
!!! AATATTTATTCAATGAATTT+TGG - chr1_4:19678466-19678485 None:intergenic 10.0%
!! AAAAAAAATAGAAATATCAT+AGG - chr1_4:19678517-19678536 None:intergenic 10.0%
!! ATAAATATTTAGATATTAGT+CGG + chr1_4:19679279-19679298 Msa0154880:intron 10.0%
!! CAAACTAATAAATATAATTA+AGG + chr1_4:19681707-19681726 Msa0154880:intron 10.0%
!!! TGGTTTATTTTTAATTTTTT+TGG + chr1_4:19681825-19681844 Msa0154880:intron 10.0%
!!! AAATTTTTTTTTTTAGTGTA+GGG + chr1_4:19682991-19683010 Msa0154880:intron 10.0%
!!! TAATTTTTTTTTAATTGCAA+AGG - chr1_4:19683771-19683790 None:intergenic 10.0%
!!! GATTTTTTATTTATGAAAAT+AGG + chr1_4:19683793-19683812 Msa0154880:intron 10.0%
!!! ATCCATATTTTTTAATTTTA+CGG - chr1_4:19683970-19683989 None:intergenic 10.0%
!! AAAAAATTATAACTATGATA+TGG - chr1_4:19684170-19684189 None:intergenic 10.0%
!! AAGATGAAATTAAGTTTAAT+TGG + chr1_4:19678256-19678275 Msa0154880:intron 15.0%
!!! TATTTAATTTCTTGCATATT+TGG + chr1_4:19679386-19679405 Msa0154880:intron 15.0%
!! ATAAGTTTCAATTATCTAAA+AGG - chr1_4:19679704-19679723 None:intergenic 15.0%
!! AAGAAAGTAATATATCAAAA+TGG - chr1_4:19680525-19680544 None:intergenic 15.0%
!!! AGTTTGTTTCTAAAAAAAAT+AGG - chr1_4:19681693-19681712 None:intergenic 15.0%
!! ACTAATAAATATAATTAAGG+AGG + chr1_4:19681710-19681729 Msa0154880:intron 15.0%
!!! AATAATAAATTACCTGTTTT+AGG - chr1_4:19682333-19682352 None:intergenic 15.0%
!!! AAAATAATTTTGACAAATTC+AGG + chr1_4:19682930-19682949 Msa0154880:intron 15.0%
!!! AAATAATTTTGACAAATTCA+GGG + chr1_4:19682931-19682950 Msa0154880:intron 15.0%
!!! GAAATTTTTTTTTTTAGTGT+AGG + chr1_4:19682990-19683009 Msa0154880:intron 15.0%
!! GTTTATAAAGAATTTACTTA+AGG - chr1_4:19683035-19683054 None:intergenic 15.0%
!! ATATTTATGAAATGTAATCT+TGG + chr1_4:19683662-19683681 Msa0154880:intron 15.0%
!! TACCGTAAAATTAAAAAATA+TGG + chr1_4:19683965-19683984 Msa0154880:intron 15.0%
!! TATACATTGTAAAACAAAAT+TGG + chr1_4:19684022-19684041 Msa0154880:intron 15.0%
!! AAAATGAAGTTAAAAGAAAA+CGG - chr1_4:19684125-19684144 None:intergenic 15.0%
!!! AATAATTCCATTTTATGTTA+TGG - chr1_4:19684996-19685015 None:intergenic 15.0%
!!! TTTTCTAAAGTTTAATATGA+TGG + chr1_4:19685163-19685182 Msa0154880:intron 15.0%
!! GAATCTAATAAATAATTGAA+GGG - chr1_4:19685264-19685283 None:intergenic 15.0%
!! TGAATCTAATAAATAATTGA+AGG - chr1_4:19685265-19685284 None:intergenic 15.0%
!!! GATTCAATGTTAATTTTTTA+TGG + chr1_4:19685279-19685298 Msa0154880:intron 15.0%
!! ATGGAAATGTCATATATTTA+TGG - chr1_4:19678541-19678560 None:intergenic 20.0%
!!! GATAAATTTGTTTTGATTTG+AGG + chr1_4:19679159-19679178 Msa0154880:intron 20.0%
!! CGATATAGATTCATTTAAAA+AGG - chr1_4:19679983-19680002 None:intergenic 20.0%
!!! AAGTTATTAACTTTTTTCTC+TGG - chr1_4:19680029-19680048 None:intergenic 20.0%
!! GTTAATAACTTGATATTAGT+TGG + chr1_4:19680038-19680057 Msa0154880:intron 20.0%
!!! TGCTTTTTACCTAATTTTTT+AGG + chr1_4:19680911-19680930 Msa0154880:intron 20.0%
!!! CATAAGAAATAAGAAAGTAT+TGG - chr1_4:19681068-19681087 None:intergenic 20.0%
!!! AAGGTTAAGTTTTTCATAAT+AGG + chr1_4:19681467-19681486 Msa0154880:intron 20.0%
!! ATTATAAAAATTGTCATGAG+AGG + chr1_4:19682140-19682159 Msa0154880:intron 20.0%
!! ATTTCAATTTATACAGCTTA+GGG + chr1_4:19682426-19682445 Msa0154880:intron 20.0%
!!! TACATAAATTTTTGAAACAC+AGG - chr1_4:19682521-19682540 None:intergenic 20.0%
!! TGTGTTTCAAAAATTTATGT+AGG + chr1_4:19682520-19682539 Msa0154880:intron 20.0%
!! AATACTAATGATTATACAAC+AGG - chr1_4:19682560-19682579 None:intergenic 20.0%
!! ATAATCTATCTAAATTACCA+GGG - chr1_4:19682690-19682709 None:intergenic 20.0%
!! TATAATCTATCTAAATTACC+AGG - chr1_4:19682691-19682710 None:intergenic 20.0%
!! AAATGTCTCTAAATAAGTAA+TGG - chr1_4:19682721-19682740 None:intergenic 20.0%
!!! AATTTCATAATGTCTTATTG+AGG - chr1_4:19683292-19683311 None:intergenic 20.0%
!!! TTCTGGTATTTAAAATCTAA+TGG - chr1_4:19683582-19683601 None:intergenic 20.0%
!!! TTAATTTTACGGTAAATATC+TGG - chr1_4:19683959-19683978 None:intergenic 20.0%
!! TAAAAGAACTTAAACATTAG+TGG - chr1_4:19684332-19684351 None:intergenic 20.0%
!! CATCATTTATCATAATGATT+AGG - chr1_4:19684364-19684383 None:intergenic 20.0%
!! CTAATCATTATGATAAATGA+TGG + chr1_4:19684362-19684381 Msa0154880:intron 20.0%
!!! NNNNNNNNNNTTCTAAAGCC+TGG - chr1_4:19684577-19684596 None:intergenic 20.0%
!! ATTAACTTTAGTAAATGTAG+AGG + chr1_4:19684870-19684889 Msa0154880:intron 20.0%
!! TAAATGCTACTATAAGTTTA+GGG + chr1_4:19684936-19684955 Msa0154880:intron 20.0%
!! AATGGAATTATTACCATAAA+AGG + chr1_4:19685004-19685023 Msa0154880:intron 20.0%
!!! TCAAAAATAGTTTCCTTTTA+TGG - chr1_4:19685020-19685039 None:intergenic 20.0%
!!! GTTAATTTTTTATGGTTCAT+TGG + chr1_4:19685287-19685306 Msa0154880:intron 20.0%
!! ATTCGGTTAAATGAAAAATA+TGG - chr1_4:19685348-19685367 None:intergenic 20.0%
!! AATAATATTGCTAACATCAA+TGG - chr1_4:19685427-19685446 None:intergenic 20.0%
! TTTATTTGCATTCAGAGAAT+TGG + chr1_4:19678026-19678045 Msa0154880:intron 25.0%
!!! TAAGTTTTGTGAGTTTGTTT+GGG - chr1_4:19678408-19678427 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGTTTGTT+TGG - chr1_4:19678409-19678428 None:intergenic 25.0%
!! TTCAATGAATTTTGGATTGA+GGG - chr1_4:19678458-19678477 None:intergenic 25.0%
!! ATTCAATGAATTTTGGATTG+AGG - chr1_4:19678459-19678478 None:intergenic 25.0%
! GTATATTCAAGCATCATAAA+TGG - chr1_4:19678560-19678579 None:intergenic 25.0%
!!! GGATTTTATGTTATTTGATG+TGG + chr1_4:19678614-19678633 Msa0154880:intron 25.0%
!!! GTGTATTTTTTCAATTGTGT+AGG + chr1_4:19678639-19678658 Msa0154880:intron 25.0%
! TCTTGTCGATAACTAATATT+AGG + chr1_4:19678934-19678953 Msa0154880:intron 25.0%
! AAACTAAAGATAGTTTCTGA+CGG - chr1_4:19679017-19679036 None:intergenic 25.0%
!! AGAAACTATCTTTAGTTTCT+AGG + chr1_4:19679019-19679038 Msa0154880:intron 25.0%
!! TTCTTTTGTCTATGACTTAA+AGG - chr1_4:19679123-19679142 None:intergenic 25.0%
! TATCTAAAAGGATTGATACA+GGG - chr1_4:19679692-19679711 None:intergenic 25.0%
! TTATCTAAAAGGATTGATAC+AGG - chr1_4:19679693-19679712 None:intergenic 25.0%
!! ATATTTTCATAACCAGAATG+AGG + chr1_4:19679760-19679779 Msa0154880:intron 25.0%
! TTCATTTAAAAAGGACACAA+TGG - chr1_4:19679974-19679993 None:intergenic 25.0%
! AATCTATATCGTCATACATA+GGG + chr1_4:19679992-19680011 Msa0154880:intron 25.0%
!!! GTTTCATTATTCTGAAATGA+AGG - chr1_4:19680120-19680139 None:intergenic 25.0%
! AATAATGAAACACAATTGTC+TGG + chr1_4:19680129-19680148 Msa0154880:intron 25.0%
! AGTAATATATCAAAATGGTC+TGG - chr1_4:19680520-19680539 None:intergenic 25.0%
!! TTTTGAATTAACTAACCAAC+AGG + chr1_4:19680576-19680595 Msa0154880:intron 25.0%
!!! CCATTGATTTATTCATTATC+CGG + chr1_4:19680720-19680739 Msa0154880:CDS 25.0%
! AAATTAGGTAAAAAGCAGTT+GGG - chr1_4:19680908-19680927 None:intergenic 25.0%
! AAAATTAGGTAAAAAGCAGT+TGG - chr1_4:19680909-19680928 None:intergenic 25.0%
! AACGATAAAATACTCTATCA+TGG + chr1_4:19681198-19681217 Msa0154880:intron 25.0%
! TATAACTTCGAAATACATAG+AGG - chr1_4:19681266-19681285 None:intergenic 25.0%
! GATGAAAGAATAAAGAAACA+AGG + chr1_4:19681448-19681467 Msa0154880:intron 25.0%
! GTTATCCTTTGTATATATAG+AGG + chr1_4:19681596-19681615 Msa0154880:intron 25.0%
! TGTAACCTCTATATATACAA+AGG - chr1_4:19681604-19681623 None:intergenic 25.0%
!! TTTGTTGTAATTACTTGTAC+AGG - chr1_4:19681628-19681647 None:intergenic 25.0%
! ATATGTATTGTGTAGAGAAA+CGG - chr1_4:19682061-19682080 None:intergenic 25.0%
! AGATGATTAACATTAAACCA+TGG - chr1_4:19682097-19682116 None:intergenic 25.0%
!!! ATTATTTTAATGCTTTCAGC+TGG + chr1_4:19682347-19682366 Msa0154880:intron 25.0%
! CATTTCAATTTATACAGCTT+AGG + chr1_4:19682425-19682444 Msa0154880:intron 25.0%
! AAAAGTTAACAATCCATTGT+CGG - chr1_4:19682612-19682631 None:intergenic 25.0%
!! CAAGAAATATTATCTAGTTC+AGG - chr1_4:19683381-19683400 None:intergenic 25.0%
! CTGAACTAGATAATATTTCT+TGG + chr1_4:19683379-19683398 Msa0154880:intron 25.0%
!!! GAATGTTTTAATGTTTGAAC+TGG + chr1_4:19683610-19683629 Msa0154880:intron 25.0%
!! AAAACAAAATTGGTTTCAGT+AGG + chr1_4:19684032-19684051 Msa0154880:intron 25.0%
!! TTTTAAATGAACCACAAATC+AGG - chr1_4:19684074-19684093 None:intergenic 25.0%
!!! ATTTTTTCTTTGCTTTTGCA+TGG + chr1_4:19684183-19684202 Msa0154880:intron 25.0%
! ACACTTGTCTTAATGTTTAA+AGG - chr1_4:19684222-19684241 None:intergenic 25.0%
!!! TGTTTTGTTATTTGCAATTG+TGG + chr1_4:19684241-19684260 Msa0154880:intron 25.0%
! TATCATAATGATTAGGATAG+TGG - chr1_4:19684357-19684376 None:intergenic 25.0%
! GTAAATGCTACTATAAGTTT+AGG + chr1_4:19684935-19684954 Msa0154880:intron 25.0%
! TGGTTAACCATAACATAAAA+TGG + chr1_4:19684986-19685005 Msa0154880:intron 25.0%
!! AACTTTAGAAAAATGCTAAC+CGG - chr1_4:19685155-19685174 None:intergenic 25.0%
!!! TCATTTTACACAACTTTTTC+AGG + chr1_4:19685636-19685655 Msa0154880:intron 25.0%
AATGGAAGAAGATGAACAAT+TGG + chr1_4:19678085-19678104 Msa0154880:CDS 30.0%
!! AATATACATAAGCATTGAGC+TGG + chr1_4:19678573-19678592 Msa0154880:intron 30.0%
AAGTAGTGAATTTCTACCAT+TGG + chr1_4:19678669-19678688 Msa0154880:CDS 30.0%
AGCTAGTATTACTGCATATT+GGG + chr1_4:19678702-19678721 Msa0154880:CDS 30.0%
!! ATATTAGGCGTGTTGATTTA+AGG + chr1_4:19678949-19678968 Msa0154880:intron 30.0%
AACTAAAGATAGTTTCTGAC+GGG - chr1_4:19679016-19679035 None:intergenic 30.0%
! ATTTGAGGTGAATGATAGAT+CGG + chr1_4:19679174-19679193 Msa0154880:intron 30.0%
ATATCACAAATAAGCAACCA+CGG - chr1_4:19679744-19679763 None:intergenic 30.0%
ACACAATGGCATATATAGAA+GGG - chr1_4:19679960-19679979 None:intergenic 30.0%
GAATCTATATCGTCATACAT+AGG + chr1_4:19679991-19680010 Msa0154880:intron 30.0%
!!! TTCTGAGGTTTTTTTGTTCT+TGG + chr1_4:19680347-19680366 Msa0154880:intron 30.0%
CCGGATAATGAATAAATCAA+TGG - chr1_4:19680723-19680742 None:intergenic 30.0%
CAATGGAGACCTAAAAAATT+AGG - chr1_4:19680923-19680942 None:intergenic 30.0%
TATGTGAATGAAGGTGAAAA+TGG + chr1_4:19680996-19681015 Msa0154880:CDS 30.0%
TCTTTATCTTCCTAGGTATT+CGG - chr1_4:19681179-19681198 None:intergenic 30.0%
TTATCGTTCTTTATCTTCCT+AGG - chr1_4:19681186-19681205 None:intergenic 30.0%
TCTTCACACAACACATTAAT+CGG + chr1_4:19681237-19681256 Msa0154880:intron 30.0%
CAGTTAATTAGTTAGGACTT+AGG - chr1_4:19681293-19681312 None:intergenic 30.0%
GTTAGAGCAGTTAATTAGTT+AGG - chr1_4:19681300-19681319 None:intergenic 30.0%
! GATCATATTGCCTTTTATGA+GGG + chr1_4:19681489-19681508 Msa0154880:intron 30.0%
ATGATGAGACTAAGAACATT+AGG + chr1_4:19681756-19681775 Msa0154880:intron 30.0%
!! AATTTGTTGCAACTGATTGA+TGG + chr1_4:19681805-19681824 Msa0154880:intron 30.0%
CTAGTGAATGATTGTATGTA+TGG + chr1_4:19681871-19681890 Msa0154880:intron 30.0%
TATAGAGAGAGAAATAGAGT+GGG - chr1_4:19682005-19682024 None:intergenic 30.0%
ATATAGAGAGAGAAATAGAG+TGG - chr1_4:19682006-19682025 None:intergenic 30.0%
TTAAACCATGGTAGTCAAAT+CGG - chr1_4:19682085-19682104 None:intergenic 30.0%
TCTTATCACAGTTCAATTTC+AGG + chr1_4:19682174-19682193 Msa0154880:intron 30.0%
!!! AAAAGTGTTTTTACCGACAA+TGG + chr1_4:19682596-19682615 Msa0154880:intron 30.0%
!!! GACAATGGATTGTTAACTTT+TGG + chr1_4:19682611-19682630 Msa0154880:intron 30.0%
ATTAAAGATGTCAAGGATAG+TGG - chr1_4:19682658-19682677 None:intergenic 30.0%
GTGAAACATTAAAGATGTCA+AGG - chr1_4:19682665-19682684 None:intergenic 30.0%
TGATATTGTTTAGACTGGAA+AGG + chr1_4:19682807-19682826 Msa0154880:intron 30.0%
!!! TTACAATTGTTTTGGGTTCA+AGG + chr1_4:19682959-19682978 Msa0154880:intron 30.0%
!!! TACAATTGTTTTGGGTTCAA+GGG + chr1_4:19682960-19682979 Msa0154880:intron 30.0%
AAACTTGCAATACTTGACTT+TGG + chr1_4:19683159-19683178 Msa0154880:CDS 30.0%
AAAACATTCATTGCAAGTTC+TGG - chr1_4:19683599-19683618 None:intergenic 30.0%
CTTGGAAGATTCTTTGTATA+TGG + chr1_4:19683680-19683699 Msa0154880:intron 30.0%
TTTGTATATGGTATAAGCGT+AGG + chr1_4:19683692-19683711 Msa0154880:intron 30.0%
TGCTTATTCTTCATAAAGCA+TGG + chr1_4:19683715-19683734 Msa0154880:intron 30.0%
GCTTATTCTTCATAAAGCAT+GGG + chr1_4:19683716-19683735 Msa0154880:intron 30.0%
! AAATTGGTTTCAGTAGGAAA+TGG + chr1_4:19684038-19684057 Msa0154880:intron 30.0%
! GTGAAATTTAACCTGATTTG+TGG + chr1_4:19684060-19684079 Msa0154880:intron 30.0%
!!! AACTTCATTTTTTCTCCTTC+AGG + chr1_4:19684134-19684153 Msa0154880:intron 30.0%
TTTAACGAAGTCTTTCACTA+TGG - chr1_4:19684489-19684508 None:intergenic 30.0%
! CACTGGTTAAGATATGAAAA+AGG - chr1_4:19685123-19685142 None:intergenic 30.0%
TTACATATGGTTTCAGGATT+CGG - chr1_4:19685365-19685384 None:intergenic 30.0%
AGTAGTAAATGAGTTCATAG+AGG - chr1_4:19685582-19685601 None:intergenic 30.0%
TACAATCAACAAAATGCTAC+AGG + chr1_4:19685601-19685620 Msa0154880:intron 30.0%
TAATGATTCACTCTTTGCTG+AGG + chr1_4:19678142-19678161 Msa0154880:CDS 35.0%
!!! TGGTGAGCTACTTTTTTTCT+TGG + chr1_4:19678593-19678612 Msa0154880:intron 35.0%
CAATATGCAGTAATACTAGC+TGG - chr1_4:19678703-19678722 None:intergenic 35.0%
CAGCTAGTATTACTGCATAT+TGG + chr1_4:19678701-19678720 Msa0154880:CDS 35.0%
GCTAGTATTACTGCATATTG+GGG + chr1_4:19678703-19678722 Msa0154880:CDS 35.0%
GGTTAACAAGAAGGTTAAAG+AGG + chr1_4:19678810-19678829 Msa0154880:CDS 35.0%
AGAGAAGAAACAGAAAGCAA+GGG - chr1_4:19678917-19678936 None:intergenic 35.0%
AAGAGAAGAAACAGAAAGCA+AGG - chr1_4:19678918-19678937 None:intergenic 35.0%
! TTTGAGGTGAATGATAGATC+GGG + chr1_4:19679175-19679194 Msa0154880:intron 35.0%
TAGAAGTTTCCAGTTACGTA+TGG + chr1_4:19679226-19679245 Msa0154880:intron 35.0%
TGTTATCATGTGTGTTGCAT+GGG - chr1_4:19679309-19679328 None:intergenic 35.0%
ATGTTATCATGTGTGTTGCA+TGG - chr1_4:19679310-19679329 None:intergenic 35.0%
TTTGCACAACAACATTGTGT+TGG + chr1_4:19679493-19679512 Msa0154880:intron 35.0%
GTTTACAAAACCAGCTTGTA+AGG - chr1_4:19679648-19679667 None:intergenic 35.0%
TTGTGCTATATATTTCACCG+TGG + chr1_4:19679724-19679743 Msa0154880:intron 35.0%
ACGTGAAATTGTGACATCTT+TGG + chr1_4:19679802-19679821 Msa0154880:CDS 35.0%
CGTGAAATTGTGACATCTTT+GGG + chr1_4:19679803-19679822 Msa0154880:CDS 35.0%
GTCCAGCATACATAAAACTT+GGG + chr1_4:19679825-19679844 Msa0154880:CDS 35.0%
AGCATTCAATGAAAGGGTAA+AGG - chr1_4:19679937-19679956 None:intergenic 35.0%
GACACAATGGCATATATAGA+AGG - chr1_4:19679961-19679980 None:intergenic 35.0%
!!! GTCACTGCAGAGTTTTTTTT+TGG - chr1_4:19680184-19680203 None:intergenic 35.0%
GACAGCAATTCTTGTAAGAA+GGG - chr1_4:19680248-19680267 None:intergenic 35.0%
AGACAGCAATTCTTGTAAGA+AGG - chr1_4:19680249-19680268 None:intergenic 35.0%
! AGAATTGCTGTCTGATGTTT+TGG + chr1_4:19680256-19680275 Msa0154880:intron 35.0%
!!! TGAGGTTTTTTTGTTCTTGG+TGG + chr1_4:19680350-19680369 Msa0154880:intron 35.0%
!!! GAGGTTTTTTTGTTCTTGGT+GGG + chr1_4:19680351-19680370 Msa0154880:intron 35.0%
!!! AGGTTTTTTTGTTCTTGGTG+GGG + chr1_4:19680352-19680371 Msa0154880:intron 35.0%
! GAAGGAACCTTCACATTTTA+TGG - chr1_4:19680391-19680410 None:intergenic 35.0%
! TCAGAATAGACATTTTGCCA+TGG - chr1_4:19680463-19680482 None:intergenic 35.0%
ACAAGAAAACAGATACCTGT+TGG - chr1_4:19680594-19680613 None:intergenic 35.0%
TTATTCATTATCCGGAACCT+TGG + chr1_4:19680728-19680747 Msa0154880:CDS 35.0%
!! ACAAGAATTTAACTTGCCTG+AGG - chr1_4:19680773-19680792 None:intergenic 35.0%
GAGTTAGACTATGTGAATGA+AGG + chr1_4:19680987-19681006 Msa0154880:CDS 35.0%
CAGGTCTTTCTTCATCATTT+CGG - chr1_4:19681033-19681052 None:intergenic 35.0%
TACTGACGTAAAACAGATAG+TGG - chr1_4:19681107-19681126 None:intergenic 35.0%
TTACACTAAGCAGAAGATCT+TGG + chr1_4:19681128-19681147 Msa0154880:intron 35.0%
CTTTATCTTCCTAGGTATTC+GGG - chr1_4:19681178-19681197 None:intergenic 35.0%
AACTGCTCTAACAGTTTACA+TGG + chr1_4:19681308-19681327 Msa0154880:intron 35.0%
!! GATCGTCCATTTGATTTGTT+GGG + chr1_4:19681364-19681383 Msa0154880:intron 35.0%
GGAAAGAAAGTAACATCAGT+TGG - chr1_4:19681390-19681409 None:intergenic 35.0%
! GGATCATATTGCCTTTTATG+AGG + chr1_4:19681488-19681507 Msa0154880:intron 35.0%
AGATATGAAGCCCTCATAAA+AGG - chr1_4:19681502-19681521 None:intergenic 35.0%
CCTTGACACATATCATCAAT+AGG - chr1_4:19681554-19681573 None:intergenic 35.0%
! CCTATTGATGATATGTGTCA+AGG + chr1_4:19681551-19681570 Msa0154880:intron 35.0%
! TTGATGATATGTGTCAAGGT+TGG + chr1_4:19681555-19681574 Msa0154880:intron 35.0%
GTCTCATCATATTGTGAATC+AGG - chr1_4:19681746-19681765 None:intergenic 35.0%
TAGGCTAGACTTTCATTCAA+TGG + chr1_4:19681775-19681794 Msa0154880:intron 35.0%
TGGGAATTTGTAAAGAATGG+TGG - chr1_4:19681986-19682005 None:intergenic 35.0%
GAGTGGGAATTTGTAAAGAA+TGG - chr1_4:19681989-19682008 None:intergenic 35.0%
TAAACCATGGTAGTCAAATC+GGG - chr1_4:19682084-19682103 None:intergenic 35.0%
!! GTATACTTGCTGTAAGTTCT+TGG - chr1_4:19682208-19682227 None:intergenic 35.0%
CTTACAGCAAGTATACATCA+AGG + chr1_4:19682212-19682231 Msa0154880:CDS 35.0%
!! CTTACAACAGAATGGATTGA+CGG + chr1_4:19682241-19682260 Msa0154880:CDS 35.0%
GTCGGAGAATTAGTTAATGT+TGG + chr1_4:19682295-19682314 Msa0154880:CDS 35.0%
AGATGTAGCTTAAAGCTCAT+GGG - chr1_4:19682391-19682410 None:intergenic 35.0%
AAGATGTAGCTTAAAGCTCA+TGG - chr1_4:19682392-19682411 None:intergenic 35.0%
TCTTTAATGTTTCACTTCCC+TGG + chr1_4:19682670-19682689 Msa0154880:intron 35.0%
CTCTAAATAAGTAATGGCAG+AGG - chr1_4:19682715-19682734 None:intergenic 35.0%
!! GAGATAATTGATAGCGTATG+TGG + chr1_4:19682783-19682802 Msa0154880:intron 35.0%
GTGGATGATATTGTTTAGAC+TGG + chr1_4:19682802-19682821 Msa0154880:intron 35.0%
TTGTTTAGACTGGAAAGGAT+TGG + chr1_4:19682812-19682831 Msa0154880:intron 35.0%
TATTTGGGTCCTCTAAATTC+AGG + chr1_4:19682876-19682895 Msa0154880:intron 35.0%
ATTTGGGTCCTCTAAATTCA+GGG + chr1_4:19682877-19682896 Msa0154880:intron 35.0%
! GGCTCGATTACAATTGTTTT+GGG + chr1_4:19682952-19682971 Msa0154880:intron 35.0%
!!! ACAATTGTTTTGGGTTCAAG+GGG + chr1_4:19682961-19682980 Msa0154880:intron 35.0%
TTATTTCAGCTGCTTGATAC+TGG + chr1_4:19683084-19683103 Msa0154880:intron 35.0%
! AGTATTGCAAGTTTTCCATC+AGG - chr1_4:19683153-19683172 None:intergenic 35.0%
TTGCAATACTTGACTTTGGT+AGG + chr1_4:19683163-19683182 Msa0154880:intron 35.0%
GCACACATTTGAATCAAACA+AGG - chr1_4:19683223-19683242 None:intergenic 35.0%
TTGATTCAAATGTGTGCATG+AGG + chr1_4:19683226-19683245 Msa0154880:intron 35.0%
TGATTCAAATGTGTGCATGA+GGG + chr1_4:19683227-19683246 Msa0154880:intron 35.0%
!! AAGACTTCGTGTGTTTTGTT+TGG + chr1_4:19683347-19683366 Msa0154880:intron 35.0%
TGTGGCTAGATATTGTTCAT+CGG + chr1_4:19684259-19684278 Msa0154880:intron 35.0%
! ATGAAGTTGATCAAGACAAC+AGG - chr1_4:19684293-19684312 None:intergenic 35.0%
!!! TCAACTTCATTGCTTTTTCC+TGG + chr1_4:19684303-19684322 Msa0154880:intron 35.0%
!! GAAATCTTTTGTTGTACCCA+GGG + chr1_4:19684384-19684403 Msa0154880:intron 35.0%
! TCAATTTTGTAACAAGCCCT+GGG - chr1_4:19684403-19684422 None:intergenic 35.0%
! CATTCCATACTTTTGATCGT+CGG - chr1_4:19684426-19684445 None:intergenic 35.0%
GTGAAAGACTTCGTTAAACT+TGG + chr1_4:19684491-19684510 Msa0154880:CDS 35.0%
! GATCTAAATTGACTCCATCT+GGG - chr1_4:19684523-19684542 None:intergenic 35.0%
TCACAATAGGGAAACAATGA+CGG + chr1_4:19685216-19685235 Msa0154880:intron 35.0%
!! TATGGTGACTTCTAAGATGA+GGG - chr1_4:19685330-19685349 None:intergenic 35.0%
!! ATATGGTGACTTCTAAGATG+AGG - chr1_4:19685331-19685350 None:intergenic 35.0%
TTCGTCTTACATATGGTTTC+AGG - chr1_4:19685371-19685390 None:intergenic 35.0%
TAGTCTGTTCGTCTTACATA+TGG - chr1_4:19685378-19685397 None:intergenic 35.0%
TTCATAGAGGTTACTTATGC+AGG - chr1_4:19685569-19685588 None:intergenic 35.0%
!!! ACACAACTTTTTCAGGCTTT+TGG + chr1_4:19685643-19685662 Msa0154880:intron 35.0%
!!! CACAACTTTTTCAGGCTTTT+GGG + chr1_4:19685644-19685663 Msa0154880:intron 35.0%
!!! ACAACTTTTTCAGGCTTTTG+GGG + chr1_4:19685645-19685664 Msa0154880:intron 35.0%
!! GAGAATTGGTGATGTTTCGA+AGG + chr1_4:19678040-19678059 Msa0154880:intron 40.0%
! CAATTGGCAAGTCTTATGAG+AGG + chr1_4:19678101-19678120 Msa0154880:CDS 40.0%
! ATTTTGGATTGAGGGTCTGT+TGG - chr1_4:19678450-19678469 None:intergenic 40.0%
GTGCAGTTATTATCTGTTGC+TGG + chr1_4:19678757-19678776 Msa0154880:CDS 40.0%
CAGTTATTATCTGTTGCTGG+AGG + chr1_4:19678760-19678779 Msa0154880:CDS 40.0%
! TTGCTGGAGGTTTTCTTTCT+CGG + chr1_4:19678773-19678792 Msa0154880:CDS 40.0%
TAAGCTCATCCATACGTAAC+TGG - chr1_4:19679238-19679257 None:intergenic 40.0%
TGGAAATTCCACCCTAATTG+CGG + chr1_4:19679513-19679532 Msa0154880:intron 40.0%
TCTAGCACCTTCATTGTTCT+GGG + chr1_4:19679587-19679606 Msa0154880:intron 40.0%
ACTCAAACCCAGAACAATGA+AGG - chr1_4:19679597-19679616 None:intergenic 40.0%
! TTCATTGTTCTGGGTTTGAG+TGG + chr1_4:19679596-19679615 Msa0154880:intron 40.0%
! TCATTGTTCTGGGTTTGAGT+GGG + chr1_4:19679597-19679616 Msa0154880:intron 40.0%
TGAGTGGGGAATATAAAGCT+TGG + chr1_4:19679612-19679631 Msa0154880:intron 40.0%
GAGTGGGGAATATAAAGCTT+GGG + chr1_4:19679613-19679632 Msa0154880:intron 40.0%
TTCACGTATTTCAATAGCCC+TGG - chr1_4:19679789-19679808 None:intergenic 40.0%
GGTCCAGCATACATAAAACT+TGG + chr1_4:19679824-19679843 Msa0154880:CDS 40.0%
!! TGCCCAAGTTTTATGTATGC+TGG - chr1_4:19679830-19679849 None:intergenic 40.0%
!! GAAGGGAGCATTCAATGAAA+GGG - chr1_4:19679943-19679962 None:intergenic 40.0%
!! AGAAGGGAGCATTCAATGAA+AGG - chr1_4:19679944-19679963 None:intergenic 40.0%
!!! GTAAGCTCGTACTTTTTCTG+AGG + chr1_4:19680332-19680351 Msa0154880:intron 40.0%
!!! GGTTTTTTTGTTCTTGGTGG+GGG + chr1_4:19680353-19680372 Msa0154880:intron 40.0%
GGGGATTCCATAAAATGTGA+AGG + chr1_4:19680381-19680400 Msa0154880:intron 40.0%
TCCTTCATTTGCAGATGATG+TGG + chr1_4:19680405-19680424 Msa0154880:CDS 40.0%
ATTTGCAGATGATGTGGCTA+TGG + chr1_4:19680411-19680430 Msa0154880:CDS 40.0%
GCTCTAATTGAAGAGGAACT+TGG + chr1_4:19680433-19680452 Msa0154880:CDS 40.0%
AAAATGGTCTGGAAAGCTAC+CGG - chr1_4:19680509-19680528 None:intergenic 40.0%
GAAACATATGCAGCATCTCT+CGG + chr1_4:19680614-19680633 Msa0154880:intron 40.0%
ATCTCTCGGACAGGTATATA+AGG + chr1_4:19680628-19680647 Msa0154880:CDS 40.0%
TCTCTCGGACAGGTATATAA+GGG + chr1_4:19680629-19680648 Msa0154880:CDS 40.0%
GTAACTGTCTCGAGAACAAA+AGG - chr1_4:19680701-19680720 None:intergenic 40.0%
! ATTTTCGAAGAGCCAAACCA+AGG - chr1_4:19680748-19680767 None:intergenic 40.0%
!!! TTTTTAGGTCTCCATTGACG+TGG + chr1_4:19680926-19680945 Msa0154880:intron 40.0%
!! GGATCGTCCATTTGATTTGT+TGG + chr1_4:19681363-19681382 Msa0154880:intron 40.0%
AGTTGGCCCAACAAATCAAA+TGG - chr1_4:19681373-19681392 None:intergenic 40.0%
GCACATGCAAACAGATCATT+GGG - chr1_4:19681532-19681551 None:intergenic 40.0%
! ATATCCCGATTTGACTACCA+TGG + chr1_4:19682077-19682096 Msa0154880:intron 40.0%
ACAGCAAGTATACATCAAGG+AGG + chr1_4:19682215-19682234 Msa0154880:CDS 40.0%
CAGCAAGTATACATCAAGGA+GGG + chr1_4:19682216-19682235 Msa0154880:CDS 40.0%
CAGAGCAAAGAAAGCAATGT+CGG + chr1_4:19682277-19682296 Msa0154880:CDS 40.0%
AGTCATCTGCTACCTAAAAC+AGG + chr1_4:19682318-19682337 Msa0154880:CDS 40.0%
!! AGGATAGTGGAACATTAGTG+AGG - chr1_4:19682645-19682664 None:intergenic 40.0%
TTAGACTGGAAAGGATTGGA+AGG + chr1_4:19682816-19682835 Msa0154880:intron 40.0%
AATCCAGTCCCTGAATTTAG+AGG - chr1_4:19682888-19682907 None:intergenic 40.0%
! GGGCTCGATTACAATTGTTT+TGG + chr1_4:19682951-19682970 Msa0154880:intron 40.0%
! CGAAGTCTTTTTCTACTTCG+TGG - chr1_4:19683336-19683355 None:intergenic 40.0%
TATGGCTGTCATATTCCTGA+AGG - chr1_4:19684152-19684171 None:intergenic 40.0%
!! TTGCTTTTGCATGGCGATTT+TGG + chr1_4:19684192-19684211 Msa0154880:intron 40.0%
CTTAAACATTAGTGGCATCC+AGG - chr1_4:19684324-19684343 None:intergenic 40.0%
!! GGAAATCTTTTGTTGTACCC+AGG + chr1_4:19684383-19684402 Msa0154880:intron 40.0%
! GTCAATTTTGTAACAAGCCC+TGG - chr1_4:19684404-19684423 None:intergenic 40.0%
TTGACCGACGATCAAAAGTA+TGG + chr1_4:19684419-19684438 Msa0154880:CDS 40.0%
CAATTGCTCATCTCATCCAT+CGG + chr1_4:19684453-19684472 Msa0154880:CDS 40.0%
AATTGCTCATCTCATCCATC+GGG + chr1_4:19684454-19684473 Msa0154880:CDS 40.0%
AAACTTGGTTTCATCCCAGA+TGG + chr1_4:19684506-19684525 Msa0154880:CDS 40.0%
! GGATCTAAATTGACTCCATC+TGG - chr1_4:19684524-19684543 None:intergenic 40.0%
! NNTTTTTCGTCGTCAGTGCT+CGG + chr1_4:19684685-19684704 Msa0154880:intron 40.0%
AATGTAGAGGAGAAACGAAG+AGG + chr1_4:19684883-19684902 Msa0154880:intron 40.0%
TTCATATCTTAACCAGTGCC+TGG + chr1_4:19685125-19685144 Msa0154880:intron 40.0%
TCATATCTTAACCAGTGCCT+GGG + chr1_4:19685126-19685145 Msa0154880:intron 40.0%
TGCGAGTGAAGTTTCACAAT+AGG + chr1_4:19685203-19685222 Msa0154880:intron 40.0%
GCGAGTGAAGTTTCACAATA+GGG + chr1_4:19685204-19685223 Msa0154880:intron 40.0%
CCTTGAAGAAGAACCGTTGA+CGG - chr1_4:19677900-19677919 None:intergenic 45.0%
!! CGAATTTGCTGATTTCGACG+TGG + chr1_4:19677990-19678009 Msa0154880:intron 45.0%
! TAAGAGAGTGAGAGCGCAAA+TGG + chr1_4:19678067-19678086 Msa0154880:CDS 45.0%
! AGTCTTATGAGAGGTCTTCG+TGG + chr1_4:19678110-19678129 Msa0154880:CDS 45.0%
! TGTTCAGCTACGTCTTGTTG+AGG + chr1_4:19678169-19678188 Msa0154880:CDS 45.0%
CTAGCTGGATCATACACCAA+TGG - chr1_4:19678688-19678707 None:intergenic 45.0%
! TGCTGGAGGTTTTCTTTCTC+GGG + chr1_4:19678774-19678793 Msa0154880:CDS 45.0%
!! TTTTCTTTCTCGGGTTGCGT+GGG + chr1_4:19678783-19678802 Msa0154880:CDS 45.0%
GTGGGATGTGGTTAACAAGA+AGG + chr1_4:19678801-19678820 Msa0154880:CDS 45.0%
GCAAGCTGCTTAGTCTATCT+TGG - chr1_4:19678849-19678868 None:intergenic 45.0%
CTAAGGGTAGACCGCAATTA+GGG - chr1_4:19679527-19679546 None:intergenic 45.0%
ACCCTTAGGCGCCTTAATAT+CGG + chr1_4:19679539-19679558 Msa0154880:intron 45.0%
!! CAACCCAAGTGCCGATATTA+AGG - chr1_4:19679553-19679572 None:intergenic 45.0%
!! CAGAACAATGAAGGTGCTAG+AGG - chr1_4:19679588-19679607 None:intergenic 45.0%
CTCTAGCACCTTCATTGTTC+TGG + chr1_4:19679586-19679605 Msa0154880:intron 45.0%
! CATTGTTCTGGGTTTGAGTG+GGG + chr1_4:19679598-19679617 Msa0154880:intron 45.0%
ATAACCAGAATGAGGTTGCC+AGG + chr1_4:19679768-19679787 Msa0154880:intron 45.0%
TAACCAGAATGAGGTTGCCA+GGG + chr1_4:19679769-19679788 Msa0154880:intron 45.0%
GCCACATCATCTGCAAATGA+AGG - chr1_4:19680409-19680428 None:intergenic 45.0%
!! GGCTATGGCTCTAATTGAAG+AGG + chr1_4:19680426-19680445 Msa0154880:CDS 45.0%
! AATCCCCATTTTCCTTCAGG+CGG - chr1_4:19680655-19680674 None:intergenic 45.0%
! CCAAATCCCCATTTTCCTTC+AGG - chr1_4:19680658-19680677 None:intergenic 45.0%
CCTGAAGGAAAATGGGGATT+TGG + chr1_4:19680655-19680674 Msa0154880:CDS 45.0%
CATTATCCGGAACCTTGGTT+TGG + chr1_4:19680733-19680752 Msa0154880:CDS 45.0%
GGCTCTTCGAAAATTTCCTC+AGG + chr1_4:19680754-19680773 Msa0154880:CDS 45.0%
!!! GTGGGCTGCTAGATTTTTTG+AGG + chr1_4:19680965-19680984 Msa0154880:CDS 45.0%
TCTTCATCATTTCGGCGAAG+CGG - chr1_4:19681025-19681044 None:intergenic 45.0%
!! GAAAGTATTGGACTCACCTG+TGG - chr1_4:19681056-19681075 None:intergenic 45.0%
CACTAAGCAGAAGATCTTGG+TGG + chr1_4:19681131-19681150 Msa0154880:intron 45.0%
CAGAAGATCTTGGTGGAATC+TGG + chr1_4:19681138-19681157 Msa0154880:intron 45.0%
TTTGTTCCTCCCGAATACCT+AGG + chr1_4:19681166-19681185 Msa0154880:intron 45.0%
TATCTTCCTAGGTATTCGGG+AGG - chr1_4:19681175-19681194 None:intergenic 45.0%
CTATCATGGACTCAAGAGCT+TGG + chr1_4:19681212-19681231 Msa0154880:intron 45.0%
TTTACATGGCCTGCTCTCAA+CGG + chr1_4:19681322-19681341 Msa0154880:intron 45.0%
ATGGACGATCCATGTAAGTC+AGG - chr1_4:19681354-19681373 None:intergenic 45.0%
TTAAAGTGTGCGTCACACAG+AGG - chr1_4:19681411-19681430 None:intergenic 45.0%
GGCACATGCAAACAGATCAT+TGG - chr1_4:19681533-19681552 None:intergenic 45.0%
!! GTAAAGAATGGTGGACGTGT+GGG - chr1_4:19681977-19681996 None:intergenic 45.0%
!! TGTAAAGAATGGTGGACGTG+TGG - chr1_4:19681978-19681997 None:intergenic 45.0%
TTGTGTAGAGAAACGGAGCA+TGG - chr1_4:19682054-19682073 None:intergenic 45.0%
GGAGGGTTCTTACAACAGAA+TGG + chr1_4:19682233-19682252 Msa0154880:CDS 45.0%
! TTTTCATGCTGATCCTCACC+CGG + chr1_4:19683110-19683129 Msa0154880:CDS 45.0%
AATATGATCCGCACTCCTGA+TGG + chr1_4:19683135-19683154 Msa0154880:CDS 45.0%
! CAAGTTTTCCATCAGGAGTG+CGG - chr1_4:19683146-19683165 None:intergenic 45.0%
ACGAAGTCTTTCACTATGGC+TGG - chr1_4:19684485-19684504 None:intergenic 45.0%
!! TTTGCAAGCACTGGCAAGAT+AGG - chr1_4:19684545-19684564 None:intergenic 45.0%
TATCTTGCCAGTGCTTGCAA+AGG + chr1_4:19684544-19684563 Msa0154880:CDS 45.0%
TCAAAGACCTTTGCAAGCAC+TGG - chr1_4:19684554-19684573 None:intergenic 45.0%
!!! GTGCTCGGTGGTCTTTTTTA+AGG + chr1_4:19684700-19684719 Msa0154880:intron 45.0%
! AAGTTTAGGGTCCTGCTAAC+CGG + chr1_4:19684949-19684968 Msa0154880:intron 45.0%
CATATCTTAACCAGTGCCTG+GGG + chr1_4:19685127-19685146 Msa0154880:intron 45.0%
!! TATATGTTAATTTATTAATA+TGG + chr1_4:19680812-19680831 Msa0154880:intron 5.0%
!! ACAAATTATTTAAAAATTTA+GGG - chr1_4:19682857-19682876 None:intergenic 5.0%
!! TACAAATTATTTAAAAATTT+AGG - chr1_4:19682858-19682877 None:intergenic 5.0%
!!! ATTTTTAAATAATTTGTATT+TGG + chr1_4:19682860-19682879 Msa0154880:intron 5.0%
!!! TTTTTAAATAATTTGTATTT+GGG + chr1_4:19682861-19682880 Msa0154880:intron 5.0%
!! AAAATAAAAAAATTAATTCA+AGG - chr1_4:19683061-19683080 None:intergenic 5.0%
!! AAAAAAAAATAAAAGATATA+CGG - chr1_4:19683486-19683505 None:intergenic 5.0%
!!! AAAATTATTTTAAATTTTCT+TGG + chr1_4:19683927-19683946 Msa0154880:intron 5.0%
TCATCCCAACTCATCTACCG+CGG + chr1_4:19677755-19677774 Msa0154880:CDS 50.0%
GATTCCGCGGTAGATGAGTT+GGG - chr1_4:19677762-19677781 None:intergenic 50.0%
! GGAGTAAAGGATCGATTCCG+CGG - chr1_4:19677775-19677794 None:intergenic 50.0%
TGAAGAAGAACCGTTGACGG+TGG - chr1_4:19677897-19677916 None:intergenic 50.0%
CCGTCAACGGTTCTTCTTCA+AGG + chr1_4:19677897-19677916 Msa0154880:CDS 50.0%
AGAGACACCGTTGACAGGTT+TGG - chr1_4:19677933-19677952 None:intergenic 50.0%
AAACCTGTCAACGGTGTCTC+TGG + chr1_4:19677932-19677951 Msa0154880:CDS 50.0%
AACCTGTCAACGGTGTCTCT+GGG + chr1_4:19677933-19677952 Msa0154880:CDS 50.0%
CTGCACAATGCGAGTTGCAA+CGG - chr1_4:19678743-19678762 None:intergenic 50.0%
!! GTTTTCTTTCTCGGGTTGCG+TGG + chr1_4:19678782-19678801 Msa0154880:CDS 50.0%
CTTGACGTGGTGGTCATTGT+CGG + chr1_4:19678876-19678895 Msa0154880:intron 50.0%
! ATAGATCGGGTTGCGTACAC+AGG + chr1_4:19679188-19679207 Msa0154880:intron 50.0%
CCTAAGGGTAGACCGCAATT+AGG - chr1_4:19679528-19679547 None:intergenic 50.0%
CCTAATTGCGGTCTACCCTT+AGG + chr1_4:19679525-19679544 Msa0154880:intron 50.0%
! GCCGATATTAAGGCGCCTAA+GGG - chr1_4:19679543-19679562 None:intergenic 50.0%
! TGCCGATATTAAGGCGCCTA+AGG - chr1_4:19679544-19679563 None:intergenic 50.0%
GCGCCTTAATATCGGCACTT+GGG + chr1_4:19679547-19679566 Msa0154880:intron 50.0%
GGTGCTAGAGGATGCAATGA+AGG - chr1_4:19679576-19679595 None:intergenic 50.0%
GCAGTTCTCACCTTACAAGC+TGG + chr1_4:19679635-19679654 Msa0154880:intron 50.0%
GCTGCAGGTGACAGTATATC+AGG - chr1_4:19679869-19679888 None:intergenic 50.0%
TGCAACTCTGTCATTGCTGC+AGG - chr1_4:19679884-19679903 None:intergenic 50.0%
! TTTTGTTCTTGGTGGGGGTG+TGG + chr1_4:19680358-19680377 Msa0154880:intron 50.0%
! TTTGTTCTTGGTGGGGGTGT+GGG + chr1_4:19680359-19680378 Msa0154880:intron 50.0%
AAGAGGAACTTGGTCAGCCA+TGG + chr1_4:19680443-19680462 Msa0154880:CDS 50.0%
ATATGCAGCATCTCTCGGAC+AGG + chr1_4:19680619-19680638 Msa0154880:intron 50.0%
GAAGAGCCAAACCAAGGTTC+CGG - chr1_4:19680742-19680761 None:intergenic 50.0%
TAGGTCTCCATTGACGTGGT+TGG + chr1_4:19680930-19680949 Msa0154880:intron 50.0%
AGGTCTCCATTGACGTGGTT+GGG + chr1_4:19680931-19680950 Msa0154880:intron 50.0%
AACCAACCCAACCACGTCAA+TGG - chr1_4:19680940-19680959 None:intergenic 50.0%
GATGAAGAAAGACCTGCCAC+AGG + chr1_4:19681037-19681056 Msa0154880:CDS 50.0%
CGGACAAGTCCTGACTTACA+TGG + chr1_4:19681342-19681361 Msa0154880:intron 50.0%
GGACGTGTGGGAAGTTGTAA+AGG - chr1_4:19681965-19681984 None:intergenic 50.0%
ACGGAGCATGGAGAAACAGA+GGG - chr1_4:19682042-19682061 None:intergenic 50.0%
AACGGAGCATGGAGAAACAG+AGG - chr1_4:19682043-19682062 None:intergenic 50.0%
GGTCCTCTAAATTCAGGGAC+TGG + chr1_4:19682882-19682901 Msa0154880:intron 50.0%
TTTCATGCTGATCCTCACCC+GGG + chr1_4:19683111-19683130 Msa0154880:CDS 50.0%
CTATGGCTGGATAATCCCGA+TGG - chr1_4:19684472-19684491 None:intergenic 50.0%
GCTTGCAAAGGTCTTTGACC+AGG + chr1_4:19684556-19684575 Msa0154880:intron 50.0%
CGATTCCGCGGTAGATGAGT+TGG - chr1_4:19677763-19677782 None:intergenic 55.0%
GAATGGGACGAGCGGAGTAA+AGG - chr1_4:19677788-19677807 None:intergenic 55.0%
GTTGTTGTGGCGGTGGGAAT+GGG - chr1_4:19677804-19677823 None:intergenic 55.0%
CGGAGATACGGTTAGAACGC+CGG - chr1_4:19677841-19677860 None:intergenic 55.0%
! TTTAGGATCCGTGGCGACAG+CGG - chr1_4:19677861-19677880 None:intergenic 55.0%
! AGGAGCAGGTTTAGGATCCG+TGG - chr1_4:19677870-19677889 None:intergenic 55.0%
GTGGTGACAGGAGCAGGTTT+AGG - chr1_4:19677878-19677897 None:intergenic 55.0%
ACACCGTTGACAGGTTTGGC+AGG - chr1_4:19677929-19677948 None:intergenic 55.0%
ACCTGTCAACGGTGTCTCTG+GGG + chr1_4:19677934-19677953 Msa0154880:CDS 55.0%
GCTTGCGTGCATTCTTGACG+TGG + chr1_4:19678863-19678882 Msa0154880:intron 55.0%
TGCGTGCATTCTTGACGTGG+TGG + chr1_4:19678866-19678885 Msa0154880:intron 55.0%
AGGGTAGACCGCAATTAGGG+TGG - chr1_4:19679524-19679543 None:intergenic 55.0%
GGCGCCTTAATATCGGCACT+TGG + chr1_4:19679546-19679565 Msa0154880:intron 55.0%
TAGCCCTGGCAACCTCATTC+TGG - chr1_4:19679775-19679794 None:intergenic 55.0%
! TTGTTCTTGGTGGGGGTGTG+GGG + chr1_4:19680360-19680379 Msa0154880:intron 55.0%
ATGGTCTGGAAAGCTACCGG+CGG - chr1_4:19680506-19680525 None:intergenic 55.0%
GGTATATAAGGGCCGCCTGA+AGG + chr1_4:19680640-19680659 Msa0154880:CDS 55.0%
AAGGGCCGCCTGAAGGAAAA+TGG + chr1_4:19680647-19680666 Msa0154880:CDS 55.0%
AGGGCCGCCTGAAGGAAAAT+GGG + chr1_4:19680648-19680667 Msa0154880:CDS 55.0%
CTCCATTGACGTGGTTGGGT+TGG + chr1_4:19680935-19680954 Msa0154880:CDS 55.0%
!! TGGTTGGGTTGGTTGACGAG+TGG + chr1_4:19680946-19680965 Msa0154880:CDS 55.0%
!! GGTTGGGTTGGTTGACGAGT+GGG + chr1_4:19680947-19680966 Msa0154880:CDS 55.0%
GTATTGGACTCACCTGTGGC+AGG - chr1_4:19681052-19681071 None:intergenic 55.0%
AGGACTTGTCCGTTGAGAGC+AGG - chr1_4:19681334-19681353 None:intergenic 55.0%
TTCATGCTGATCCTCACCCG+GGG + chr1_4:19683112-19683131 Msa0154880:CDS 55.0%
GAGTGCGGATCATATTCCCC+GGG - chr1_4:19683131-19683150 None:intergenic 55.0%
GGAGTGCGGATCATATTCCC+CGG - chr1_4:19683132-19683151 None:intergenic 55.0%
! TTTTCGTCGTCAGTGCTCGG+TGG + chr1_4:19684688-19684707 Msa0154880:intron 55.0%
TATGGTTAACCAGTGCCCCG+AGG - chr1_4:19684978-19684997 None:intergenic 55.0%
AAAATGCTAACCGGTGCCCC+AGG - chr1_4:19685146-19685165 None:intergenic 55.0%
!! GGCTTTTGGGGAGATCCTTC+AGG + chr1_4:19685657-19685676 Msa0154880:intron 55.0%
GGTTGTTGTGGCGGTGGGAA+TGG - chr1_4:19677805-19677824 None:intergenic 60.0%
AGGGAGGTTGTTGTGGCGGT+GGG - chr1_4:19677810-19677829 None:intergenic 60.0%
GGAGAGGGAGGTTGTTGTGG+CGG - chr1_4:19677814-19677833 None:intergenic 60.0%
GACGGAGAGGGAGGTTGTTG+TGG - chr1_4:19677817-19677836 None:intergenic 60.0%
TACGGTTAGAACGCCGGCGA+CGG - chr1_4:19677835-19677854 None:intergenic 60.0%
TTGACGGTGGTGACAGGAGC+AGG - chr1_4:19677884-19677903 None:intergenic 60.0%
GCTCCTGTCACCACCGTCAA+CGG + chr1_4:19677884-19677903 Msa0154880:CDS 60.0%
GAACCGTTGACGGTGGTGAC+AGG - chr1_4:19677890-19677909 None:intergenic 60.0%
CCGTTGACAGGTTTGGCAGG+CGG - chr1_4:19677926-19677945 None:intergenic 60.0%
CCGCCTGCCAAACCTGTCAA+CGG + chr1_4:19677923-19677942 Msa0154880:CDS 60.0%
ACCCCAGAGACACCGTTGAC+AGG - chr1_4:19677938-19677957 None:intergenic 60.0%
ATGCGAGTTGCAACGGAGCG+AGG - chr1_4:19678736-19678755 None:intergenic 60.0%
! TTCTCGGGTTGCGTGGGATG+TGG + chr1_4:19678789-19678808 Msa0154880:CDS 60.0%
GACGTGGTGGTCATTGTCGG+TGG + chr1_4:19678879-19678898 Msa0154880:intron 60.0%
! TGTTCTTGGTGGGGGTGTGG+GGG + chr1_4:19680361-19680380 Msa0154880:intron 60.0%
TCAACCTCTCCCATTGCCGC+CGG + chr1_4:19680487-19680506 Msa0154880:CDS 60.0%
GGAAAGCTACCGGCGGCAAT+GGG - chr1_4:19680499-19680518 None:intergenic 60.0%
TGGAAAGCTACCGGCGGCAA+TGG - chr1_4:19680500-19680519 None:intergenic 60.0%
GGGCCGCCTGAAGGAAAATG+GGG + chr1_4:19680649-19680668 Msa0154880:CDS 60.0%
CGGATCATATTCCCCGGGTG+AGG - chr1_4:19683126-19683145 None:intergenic 60.0%
GTCCTGCTAACCGGTGTCCT+CGG + chr1_4:19684958-19684977 Msa0154880:intron 60.0%
TCCTGCTAACCGGTGTCCTC+GGG + chr1_4:19684959-19684978 Msa0154880:intron 60.0%
TTAACCAGTGCCTGGGGCAC+CGG + chr1_4:19685133-19685152 Msa0154880:intron 60.0%
GAGGGAGGTTGTTGTGGCGG+TGG - chr1_4:19677811-19677830 None:intergenic 65.0%
ACAACCTCCCTCTCCGTCGC+CGG + chr1_4:19677819-19677838 Msa0154880:CDS 65.0%
TAGAACGCCGGCGACGGAGA+GGG - chr1_4:19677829-19677848 None:intergenic 65.0%
TTAGAACGCCGGCGACGGAG+AGG - chr1_4:19677830-19677849 None:intergenic 65.0%
CCGTGGCGACAGCGGAGATA+CGG - chr1_4:19677853-19677872 None:intergenic 65.0%
CCGTATCTCCGCTGTCGCCA+CGG + chr1_4:19677850-19677869 Msa0154880:CDS 65.0%
! GTTCTTGGTGGGGGTGTGGG+GGG + chr1_4:19680362-19680381 Msa0154880:intron 65.0%
CCTGCTAACCGGTGTCCTCG+GGG + chr1_4:19684960-19684979 Msa0154880:intron 65.0%
AACCAGTGCCCCGAGGACAC+CGG - chr1_4:19684971-19684990 None:intergenic 65.0%
GGCGGTGGGAATGGGACGAG+CGG - chr1_4:19677796-19677815 None:intergenic 70.0%
GCTACCGGCGGCAATGGGAG+AGG - chr1_4:19680494-19680513 None:intergenic 70.0%
! CCCCGAGGACACCGGTTAGC+AGG - chr1_4:19684963-19684982 None:intergenic 70.0%
AACCGGTGTCCTCGGGGCAC+TGG + chr1_4:19684966-19684985 Msa0154880:intron 70.0%
CTAACCGGTGCCCCAGGCAC+TGG - chr1_4:19685140-19685159 None:intergenic 70.0%
AACGCCGGCGACGGAGAGGG+AGG - chr1_4:19677826-19677845 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 19677743 19685687 19677743 ID=Msa0154880;Name=Msa0154880
chr1_4 mRNA 19677743 19685687 19677743 ID=Msa0154880-mRNA-1;Parent=Msa0154880;Name=Msa0154880-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.3|0.27|0.90|1|1|11|0|493
chr1_4 exon 19677743 19677955 19677743 ID=Msa0154880-mRNA-1:exon:7257;Parent=Msa0154880-mRNA-1
chr1_4 exon 19678041 19678190 19678041 ID=Msa0154880-mRNA-1:exon:7258;Parent=Msa0154880-mRNA-1
chr1_4 exon 19678661 19678831 19678661 ID=Msa0154880-mRNA-1:exon:7259;Parent=Msa0154880-mRNA-1
chr1_4 exon 19679776 19679919 19679776 ID=Msa0154880-mRNA-1:exon:7260;Parent=Msa0154880-mRNA-1
chr1_4 exon 19680403 19680508 19680403 ID=Msa0154880-mRNA-1:exon:7261;Parent=Msa0154880-mRNA-1
chr1_4 exon 19680627 19680775 19680627 ID=Msa0154880-mRNA-1:exon:7262;Parent=Msa0154880-mRNA-1
chr1_4 exon 19680933 19681058 19680933 ID=Msa0154880-mRNA-1:exon:7263;Parent=Msa0154880-mRNA-1
chr1_4 exon 19682196 19682339 19682196 ID=Msa0154880-mRNA-1:exon:7264;Parent=Msa0154880-mRNA-1
chr1_4 exon 19683093 19683180 19683093 ID=Msa0154880-mRNA-1:exon:7265;Parent=Msa0154880-mRNA-1
chr1_4 exon 19684405 19684565 19684405 ID=Msa0154880-mRNA-1:exon:7266;Parent=Msa0154880-mRNA-1
chr1_4 exon 19685658 19685687 19685658 ID=Msa0154880-mRNA-1:exon:7267;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19677743 19677955 19677743 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19678041 19678190 19678041 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19678661 19678831 19678661 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19679776 19679919 19679776 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19680403 19680508 19680403 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19680627 19680775 19680627 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19680933 19681058 19680933 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19682196 19682339 19682196 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19683093 19683180 19683093 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19684405 19684565 19684405 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
chr1_4 CDS 19685658 19685687 19685658 ID=Msa0154880-mRNA-1:cds;Parent=Msa0154880-mRNA-1
Gene Sequence

>Msa0154880

ATGGATACAGCATCATCCCAACTCATCTACCGCGGAATCGATCCTTTACTCCGCTCGTCCCATTCCCACCGCCACAACAACCTCCCTCTCCGTCGCCGGCGTTCTAACCGTATCTCCGCTGTCGCCACGGATCCTAAACCTGCTCCTGTCACCACCGTCAACGGTTCTTCTTCAAGGTCTCCGCCTGCCAAACCTGTCAACGGTGTCTCTGGGAGAATTGGTGATGTTTCGAAGGAGATTAAGAGAGTGAGAGCGCAAATGGAAGAAGATGAACAATTGGCAAGTCTTATGAGAGGTCTTCGTGGTCAGAGTCTTAATGATTCACTCTTTGCTGAGGATGATGTTCAGCTACGTCTTGTTGAGGTAGATGAAAGTAGTGAATTTCTACCATTGGTGTATGATCCAGCTAGTATTACTGCATATTGGGGAAAACGTCCTCGCTCCGTTGCAACTCGCATTGTGCAGTTATTATCTGTTGCTGGAGGTTTTCTTTCTCGGGTTGCGTGGGATGTGGTTAACAAGAAGGTTAAAGAGAATGAGGTTGCCAGGGCTATTGAAATACGTGAAATTGTGACATCTTTGGGTCCAGCATACATAAAACTTGGGCAAGCATTGAGCATACGACCTGATATACTGTCACCTGCAGCAATGACAGAGTTGCAGAAGCTCTGTGATAAAGTTCCTTCATTTGCAGATGATGTGGCTATGGCTCTAATTGAAGAGGAACTTGGTCAGCCATGGCAAAATGTCTATTCTGAATTATCAACCTCTCCCATTGCCGCCGCATCTCTCGGACAGGTATATAAGGGCCGCCTGAAGGAAAATGGGGATTTGGTTGCTGTTAAAGTGCAAAGACCTTTTGTTCTCGAGACAGTTACCATTGATTTATTCATTATCCGGAACCTTGGTTTGGCTCTTCGAAAATTTCCTCAGGTCTCCATTGACGTGGTTGGGTTGGTTGACGAGTGGGCTGCTAGATTTTTTGAGGAGTTAGACTATGTGAATGAAGGTGAAAATGGAGACCGCTTCGCCGAAATGATGAAGAAAGACCTGCCACAGGTTGTAATACCAAGAACTTACAGCAAGTATACATCAAGGAGGGTTCTTACAACAGAATGGATTGACGGAGAGAAGCTGTCACAGAGCAAAGAAAGCAATGTCGGAGAATTAGTTAATGTTGGAGTCATCTGCTACCTAAAACAGCTGCTTGATACTGGCTTTTTTCATGCTGATCCTCACCCGGGGAATATGATCCGCACTCCTGATGGAAAACTTGCAATACTTGACTTTGGGCTTGTTACAAAATTGACCGACGATCAAAAGTATGGAATGATTGAAGCAATTGCTCATCTCATCCATCGGGATTATCCAGCCATAGTGAAAGACTTCGTTAAACTTGGTTTCATCCCAGATGGAGTCAATTTAGATCCTATCTTGCCAGTGCTTGCAAAGGCTTTTGGGGAGATCCTTCAGGAAAATTAA
Protein sequence

>Msa0154880

MDTASSQLIYRGIDPLLRSSHSHRHNNLPLRRRRSNRISAVATDPKPAPVTTVNGSSSRSPPAKPVNGVSGRIGDVSKEIKRVRAQMEEDEQLASLMRGLRGQSLNDSLFAEDDVQLRLVEVDESSEFLPLVYDPASITAYWGKRPRSVATRIVQLLSVAGGFLSRVAWDVVNKKVKENEVARAIEIREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFADDVAMALIEEELGQPWQNVYSELSTSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGDRFAEMMKKDLPQVVIPRTYSKYTSRRVLTTEWIDGEKLSQSKESNVGELVNVGVICYLKQLLDTGFFHADPHPGNMIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYPAIVKDFVKLGFIPDGVNLDPILPVLAKAFGEILQEN*