AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0364910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364910 MtrunA17_Chr3g0104361 97.674 516 10 1 1 514 1 516 0.0 1016
Msa0364910 MtrunA17_Chr8g0348761 75.000 468 109 3 55 514 121 588 0.0 734
Msa0364910 MtrunA17_Chr7g0247871 76.106 452 101 1 70 514 83 534 0.0 732
Msa0364910 MtrunA17_Chr7g0241591 39.909 441 262 2 76 513 66 506 7.03e-113 343
Msa0364910 MtrunA17_Chr4g0064801 38.343 519 293 12 14 510 11 524 2.29e-110 338
Msa0364910 MtrunA17_Chr5g0429461 41.045 402 230 2 118 512 189 590 1.21e-95 302
Msa0364910 MtrunA17_Chr4g0013731 37.868 441 246 7 101 514 4 443 3.06e-83 265
Msa0364910 MtrunA17_Chr2g0290941 84.091 132 21 0 346 477 1 132 1.91e-77 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364910 AT2G29650.1 76.983 517 111 4 1 514 1 512 0.0 778
Msa0364910 AT4G00370.1 76.264 455 104 1 64 514 87 541 0.0 728
Msa0364910 AT2G29650.3 87.310 394 50 0 121 514 7 400 0.0 709
Msa0364910 AT2G29650.4 87.692 390 48 0 125 514 1 390 0.0 703
Msa0364910 AT2G29650.2 71.814 408 97 5 1 400 1 398 0.0 559
Msa0364910 AT2G38060.1 39.563 503 282 8 31 512 10 511 3.40e-113 345
Msa0364910 AT3G46980.1 40.000 470 269 5 56 512 58 527 1.06e-106 329
Msa0364910 AT3G46980.3 40.000 470 269 5 56 512 58 527 1.21e-106 328
Msa0364910 AT3G46980.4 40.000 470 269 5 56 512 106 575 3.72e-106 329
Msa0364910 AT5G20380.1 42.417 422 233 7 96 510 90 508 6.15e-106 326
Msa0364910 AT5G20380.2 42.417 422 233 7 96 510 142 560 1.80e-105 327
Msa0364910 AT2G38060.2 38.976 449 253 7 31 459 10 457 9.73e-96 301
Msa0364910 AT3G46980.8 40.634 347 198 3 174 512 1 347 7.94e-83 261
Msa0364910 AT3G46980.2 40.634 347 198 3 174 512 1 347 7.94e-83 261
Msa0364910 AT3G46980.5 40.634 347 198 3 174 512 1 347 8.28e-83 261
Msa0364910 AT3G46980.7 40.634 347 198 3 174 512 1 347 8.28e-83 261
Msa0364910 AT5G44370.1 36.322 435 246 7 102 514 7 432 2.49e-80 257
Msa0364910 AT3G46980.6 38.298 282 166 3 239 512 2 283 8.01e-60 199

Find 148 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTACAATCTTCTTTCTTT+TGG 0.149774 3_1:-58473153 Msa0364910:CDS
ATGGCAATTTCTGCAAATTT+TGG 0.155639 3_1:-58471529 Msa0364910:CDS
TATGAATTTCCCACCAAATA+TGG 0.180418 3_1:+58469670 None:intergenic
TGAATAATATTCTGTCAAAA+TGG 0.210887 3_1:-58472700 Msa0364910:CDS
ATGCAAACAGTTGGGTTTCT+TGG 0.260195 3_1:-58471250 Msa0364910:CDS
TCCTTCTTCCAAGGCCAAAA+AGG 0.279760 3_1:+58469742 None:intergenic
TGCAGATTGCTGGTGGAATA+TGG 0.288175 3_1:-58473021 Msa0364910:intron
AAGTTCAATCTTACAGAATC+TGG 0.297006 3_1:-58471580 Msa0364910:CDS
GGAGTGCTGGCTGGTGTCCT+TGG 0.339650 3_1:-58470373 Msa0364910:CDS
ATAACAATAACCCATCTCTT+AGG 0.357009 3_1:+58474377 None:intergenic
AATCCACTTACAGAATATCT+AGG 0.360361 3_1:+58470546 None:intergenic
GAACATGAAAATATACAATA+AGG 0.360434 3_1:+58469699 None:intergenic
GGTTTCAGTTGGGCTATATT+TGG 0.362452 3_1:-58470005 Msa0364910:CDS
ATTAGTTGCCCGTGCATTCA+TGG 0.371690 3_1:-58472894 Msa0364910:CDS
GTTTGGCAGCTACCGGAGTT+AGG 0.372393 3_1:+58472933 None:intergenic
GCCATCCGTACTGATGAATT+AGG 0.372742 3_1:+58472588 None:intergenic
TAGAAAAGGCAATCCAAGTT+TGG 0.374667 3_1:+58472916 None:intergenic
ATCTAGGGGCTATATCTTGA+TGG 0.391646 3_1:+58470562 None:intergenic
TATTTCCTTCACAGGTTCCT+TGG 0.393829 3_1:+58472290 None:intergenic
AGATACTTGTTGCAGATTGC+TGG 0.402333 3_1:-58473031 Msa0364910:intron
TTGGTTCTCTAGGAACAGTT+TGG 0.409152 3_1:-58472547 Msa0364910:CDS
TGAATGGTTGAGGTTTGTTC+TGG 0.413113 3_1:+58474601 None:intergenic
CAATGTCAGCAGAGTACAAC+TGG 0.414950 3_1:-58473195 Msa0364910:CDS
ATCCAATACTGCTGGAGTGC+TGG 0.415339 3_1:-58470386 Msa0364910:CDS
CCAAAGACTGCTAATAAAAC+AGG 0.417363 3_1:+58469507 None:intergenic
TGTCACAAAATTGATGTGTT+TGG 0.419451 3_1:+58469600 None:intergenic
GCCCGTGCATTCATGGGAAT+TGG 0.421683 3_1:-58472887 Msa0364910:CDS
ACCTGTGAAGGAAATACCTT+GGG 0.422628 3_1:-58472283 Msa0364910:CDS
CCCCAAGGTATTTCCTTCAC+AGG 0.432539 3_1:+58472282 None:intergenic
AGCCAGCACTCCAGCAGTAT+TGG 0.437148 3_1:+58470384 None:intergenic
TTTGTCGAAACCACCGGTCT+GGG 0.438410 3_1:-58472253 Msa0364910:CDS
ACTCCGGTAGCTGCCAAACT+TGG 0.440722 3_1:-58472929 Msa0364910:CDS
TAAGAAATCAGTGAGTGGTT+TGG 0.440883 3_1:-58474456 Msa0364910:CDS
GAACTTTCATTCTTCTTACA+TGG 0.440920 3_1:-58472197 Msa0364910:CDS
GTCCTTGGAACAGCAGCAAC+AGG 0.445368 3_1:-58470358 Msa0364910:CDS
GAATAATATTCTGTCAAAAT+GGG 0.446232 3_1:-58472699 Msa0364910:CDS
ATGAATTTCCCACCAAATAT+GGG 0.454669 3_1:+58469671 None:intergenic
ACGGAGAAGGTGAATGGTTG+AGG 0.454848 3_1:+58474591 None:intergenic
TTTGGCCTTGGAAGAAGGAT+TGG 0.456756 3_1:-58469738 Msa0364910:three_prime_UTR
CTTACTTGATTATAGTATGT+TGG 0.458288 3_1:+58472171 None:intergenic
ATGAATTAGGAAAGGTGAAA+AGG 0.468146 3_1:+58472601 None:intergenic
AAGAAGCTGATTGCTACAAA+TGG 0.468937 3_1:-58472318 Msa0364910:CDS
ACACCTTCCCTCTTCCTCTC+CGG 0.472346 3_1:+58474546 None:intergenic
GAAAGGTGAAAAGGCCAATC+CGG 0.475695 3_1:+58472610 None:intergenic
ATCCACTTACAGAATATCTA+GGG 0.477960 3_1:+58470547 None:intergenic
CTCGGTCTATCCAATACTGC+TGG 0.479482 3_1:-58470394 Msa0364910:CDS
CTGTGTCACCGGAGAGGAAG+AGG 0.479989 3_1:-58474554 Msa0364910:CDS
TAGCATTTGGCGTCATTTGG+TGG 0.480914 3_1:-58472970 Msa0364910:CDS
GCAGATTGCTGGTGGAATAT+GGG 0.485868 3_1:-58473020 Msa0364910:intron
TTACTAGGGTGTTGCTATGC+CGG 0.487176 3_1:-58472726 Msa0364910:intron
CCTTGGATCGGTCACCGGAT+TGG 0.487323 3_1:-58472624 Msa0364910:CDS
TCATACTTACTTGATGCCTC+TGG 0.490752 3_1:+58474494 None:intergenic
CCCGAGGTGTATCTGTTACA+AGG 0.491771 3_1:-58471480 Msa0364910:CDS
CATTGCACCTGCTGTGTCAC+CGG 0.492613 3_1:-58474565 Msa0364910:CDS
TTCCTCTCCGGTGACACAGC+AGG 0.496137 3_1:+58474558 None:intergenic
TCTTCTCAGGGGATATTGCT+CGG 0.502683 3_1:-58470412 Msa0364910:intron
GTTGTGTATGACTTGCAGTC+AGG 0.504023 3_1:-58471173 Msa0364910:intron
GAGAAGTAGATCATTAGCTC+TGG 0.509100 3_1:-58472663 Msa0364910:CDS
ACTGACGCATTCTCTCAGTC+TGG 0.509935 3_1:-58470597 Msa0364910:CDS
GAAGAAGAAGAAGGTGATGG+TGG 0.511806 3_1:+58474647 None:intergenic
CACAGCAGGTGCAATGGAAA+CGG 0.512666 3_1:+58474572 None:intergenic
AATCCAAGTTTGGCAGCTAC+CGG 0.516950 3_1:+58472926 None:intergenic
TTAGTTGCCCGTGCATTCAT+GGG 0.520099 3_1:-58472893 Msa0364910:CDS
GACAGAATATTATTCATGGC+CGG 0.522317 3_1:+58472707 None:intergenic
GCACGGGCAACTAATAGAAA+AGG 0.522495 3_1:+58472902 None:intergenic
AATTGAGTTAAGAAGAAAGC+AGG 0.522748 3_1:+58471226 None:intergenic
AACAAGCTCTTCACCTTGGT+GGG 0.527785 3_1:-58474408 Msa0364910:CDS
CACCAATTCCCATGAATGCA+CGG 0.527914 3_1:+58472885 None:intergenic
AATACTGCTGGAGTGCTGGC+TGG 0.529375 3_1:-58470382 Msa0364910:CDS
GGAGAGGAAGAGGGAAGGTG+TGG 0.529959 3_1:-58474544 Msa0364910:CDS
ATGTACCTTGGATCGGTCAC+CGG 0.533825 3_1:-58472629 Msa0364910:CDS
GTATACAGTGGCATGTACCT+TGG 0.538242 3_1:-58472641 Msa0364910:CDS
TCCTAATTCATCAGTACGGA+TGG 0.541093 3_1:-58472589 Msa0364910:CDS
GAGAGGAAGAGGGAAGGTGT+GGG 0.541836 3_1:-58474543 Msa0364910:CDS
TCAGTTGGGCTATATTTGGT+CGG 0.544903 3_1:-58470001 Msa0364910:CDS
AACCTGTGAAGGAAATACCT+TGG 0.548334 3_1:-58472284 Msa0364910:CDS
GGTGATGATGTTGAGGAAGA+AGG 0.549966 3_1:-58474431 Msa0364910:CDS
AGAGGCATCAAGTAAGTATG+AGG 0.551649 3_1:-58474492 Msa0364910:CDS
CTTGAGTACTTTCTCACAGA+AGG 0.552373 3_1:-58469885 Msa0364910:three_prime_UTR
GAACAAGCTCTTCACCTTGG+TGG 0.552886 3_1:-58474409 Msa0364910:CDS
GAATGAAAGTTCCCCAGTTG+TGG 0.554343 3_1:+58472208 None:intergenic
CAGTTGTACTCTGCTGACAT+TGG 0.556876 3_1:+58473196 None:intergenic
CCACATTGATTCTCCTGTGG+TGG 0.558004 3_1:-58471200 Msa0364910:CDS
CCTTTCCTAATTCATCAGTA+CGG 0.559497 3_1:-58472593 Msa0364910:CDS
CGCATTTCTGGATCATCAAG+TGG 0.559608 3_1:+58472351 None:intergenic
CGGTGACACAGCAGGTGCAA+TGG 0.559969 3_1:+58474566 None:intergenic
CGGAGTTAGGATTGTGGCAA+CGG 0.561005 3_1:+58472946 None:intergenic
ATCTGTTACAAGGGTTCGCA+AGG 0.562047 3_1:-58471470 Msa0364910:intron
TTGGGGATACCTCCTCACTC+AGG 0.564095 3_1:-58473134 Msa0364910:intron
ATGTTAAGTCTGAGAAGCAT+GGG 0.564348 3_1:-58474517 Msa0364910:CDS
GGAATATGGGCTGACACAGT+GGG 0.567890 3_1:-58473007 Msa0364910:CDS
AGGTGCAATGGAAACGGAGA+AGG 0.568561 3_1:+58474578 None:intergenic
CCGAGGTGTATCTGTTACAA+GGG 0.569335 3_1:-58471479 Msa0364910:CDS
GATCTACTTCTCTCTGCCAC+AGG 0.573723 3_1:+58472674 None:intergenic
ACCAATTCCCATGAATGCAC+GGG 0.574833 3_1:+58472886 None:intergenic
GTCTGAGAAGCATGGGCCAG+AGG 0.575496 3_1:-58474510 Msa0364910:CDS
CTAATCCAATCCTTCTTCCA+AGG 0.576037 3_1:+58469733 None:intergenic
TTCGACAAAATTAATCCCCA+AGG 0.576040 3_1:+58472267 None:intergenic
TGTACTAAACCTACAGTGGT+GGG 0.576079 3_1:+58473169 None:intergenic
TGGAATATGGGCTGACACAG+TGG 0.577010 3_1:-58473008 Msa0364910:CDS
AACTGTTCCTAGAGAACCAA+AGG 0.579562 3_1:+58472550 None:intergenic
GACACTATCAGGGCCCAGAC+CGG 0.584574 3_1:+58472240 None:intergenic
AGAACTACAAGAGAAGAAAA+CGG 0.585903 3_1:-58469862 Msa0364910:three_prime_UTR
GATGTTAAGTCTGAGAAGCA+TGG 0.588801 3_1:-58474518 Msa0364910:CDS
TTGTACTAAACCTACAGTGG+TGG 0.599327 3_1:+58473168 None:intergenic
TTTGGATGGTGATGATGTTG+AGG 0.604507 3_1:-58474438 Msa0364910:CDS
AAGGAACAAGCTCTTCACCT+TGG 0.604532 3_1:-58474412 Msa0364910:CDS
TGTGTCACCGGAGAGGAAGA+GGG 0.604856 3_1:-58474553 Msa0364910:CDS
TACTTGTTGCAGATTGCTGG+TGG 0.606708 3_1:-58473028 Msa0364910:intron
GCTATATTTGGTCGGAACCG+TGG 0.608376 3_1:-58469993 Msa0364910:CDS
CCAATCCGGTGACCGATCCA+AGG 0.609770 3_1:+58472624 None:intergenic
AACCTGTTGCTGCTGTTCCA+AGG 0.609936 3_1:+58470356 None:intergenic
ATGGAAACGGAGAAGGTGAA+TGG 0.615461 3_1:+58474585 None:intergenic
CAGTGGCATGTACCTTGGAT+CGG 0.616265 3_1:-58472636 Msa0364910:CDS
CCCTTGTAACAGATACACCT+CGG 0.616464 3_1:+58471479 None:intergenic
CCGTACTGATGAATTAGGAA+AGG 0.618781 3_1:+58472593 None:intergenic
AACTGGAACCCCACCACTGT+AGG 0.618941 3_1:-58473178 Msa0364910:CDS
ATTTGGTCGGAACCGTGGTG+TGG 0.624024 3_1:-58469988 Msa0364910:CDS
AAATCAGTGAGTGGTTTGGA+TGG 0.624679 3_1:-58474452 Msa0364910:CDS
CCTTGTAACAGATACACCTC+GGG 0.624936 3_1:+58471480 None:intergenic
CGTTGCCACAATCCTAACTC+CGG 0.625961 3_1:-58472945 Msa0364910:CDS
TCTGTCAAAATGGGTTCCTG+TGG 0.627501 3_1:-58472690 Msa0364910:CDS
CCAAAGGAGTAAAACACTGA+TGG 0.628506 3_1:+58472566 None:intergenic
ACAGGTTACATTCTGCAGCA+TGG 0.629656 3_1:-58470340 Msa0364910:intron
ACTATCAGGGCCCAGACCGG+TGG 0.630408 3_1:+58472243 None:intergenic
TTTGTTCTGGTACGTGACAG+TGG 0.645348 3_1:+58474614 None:intergenic
TGCATTCATGGGAATTGGTG+AGG 0.647999 3_1:-58472882 Msa0364910:intron
CACTTGATGATCCAGAAATG+CGG 0.648542 3_1:-58472350 Msa0364910:CDS
ATACACAACACAGCCACCAC+AGG 0.650207 3_1:+58471187 None:intergenic
AGCTACCGGAGTTAGGATTG+TGG 0.654301 3_1:+58472940 None:intergenic
TGTGTTGTGTGACAAAGTAT+CGG 0.654494 3_1:+58469919 None:intergenic
GTTCATAAGAAATCAGTGAG+TGG 0.657940 3_1:-58474461 Msa0364910:CDS
GAAATTGCCATAGTAAGCCA+CGG 0.658098 3_1:+58471541 None:intergenic
ATTGAGTTAAGAAGAAAGCA+GGG 0.663481 3_1:+58471227 None:intergenic
CACCTGCTGTGTCACCGGAG+AGG 0.665468 3_1:-58474560 Msa0364910:CDS
GTACTAAACCTACAGTGGTG+GGG 0.666247 3_1:+58473170 None:intergenic
TCACCGGAGAGGAAGAGGGA+AGG 0.672873 3_1:-58474549 Msa0364910:CDS
GAGCCACATTGATTCTCCTG+TGG 0.675935 3_1:-58471203 Msa0364910:CDS
TCCACTTACAGAATATCTAG+GGG 0.679967 3_1:+58470548 None:intergenic
TGAAACCACATACCTGAGTG+AGG 0.683840 3_1:+58473122 None:intergenic
GCAGACACTCTTGTAACCCG+AGG 0.688978 3_1:-58471496 Msa0364910:CDS
ATATGGGCTGACACAGTGGG+AGG 0.689041 3_1:-58473004 Msa0364910:CDS
TCATTAGCTCTGGTATACAG+TGG 0.696345 3_1:-58472653 Msa0364910:CDS
AGATTGTACTAAACCTACAG+TGG 0.700672 3_1:+58473165 None:intergenic
AGAGAAAAGGTTCCACACCA+CGG 0.706429 3_1:+58469976 None:intergenic
AACCACATACCTGAGTGAGG+AGG 0.707329 3_1:+58473125 None:intergenic
CCACCACAGGAGAATCAATG+TGG 0.729771 3_1:+58471200 None:intergenic
CCTGTGAAGGAAATACCTTG+GGG 0.772599 3_1:-58472282 Msa0364910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAATTACAAAAAAGT+TGG - chr3_1:58469944-58469963 Msa0364910:exon 10.0%
!! TTTAAATATATTCATAGAAG+AGG + chr3_1:58469932-58469951 None:intergenic 15.0%
!!! TTAGATTAGTTTTTAACTTA+TGG - chr3_1:58470438-58470457 Msa0364910:intron 15.0%
!! AAAGAAAAAAAATATGAGAA+CGG + chr3_1:58472134-58472153 None:intergenic 15.0%
!!! TATTTTCAAATATATATCAC+AGG - chr3_1:58472614-58472633 Msa0364910:CDS 15.0%
!! ATAATTTCTAAATTCAGAAT+AGG - chr3_1:58473734-58473753 Msa0364910:intron 15.0%
!! AAACTTAAAATATTACATGA+AGG - chr3_1:58473958-58473977 Msa0364910:intron 15.0%
!!! AATTTTATCATATCTCTTAA+TGG - chr3_1:58473988-58474007 Msa0364910:intron 15.0%
!! ATTACAAAAAAGTTGGATAT+TGG - chr3_1:58469951-58469970 Msa0364910:exon 20.0%
!! AATAAGTTGTTTATCCAAAT+AGG - chr3_1:58470401-58470420 Msa0364910:CDS 20.0%
!! ATAAGTTGTTTATCCAAATA+GGG - chr3_1:58470402-58470421 Msa0364910:CDS 20.0%
!! GTTAAAAACTAATCTAAACT+AGG + chr3_1:58470435-58470454 None:intergenic 20.0%
!! GTTAATAAGCATTTATTAAG+AGG - chr3_1:58470575-58470594 Msa0364910:CDS 20.0%
!! ATTTATGACTATGTAATCAT+AGG - chr3_1:58470849-58470868 Msa0364910:intron 20.0%
!!! TTTTGACAGAATATTATTCA+TGG + chr3_1:58471522-58471541 None:intergenic 20.0%
!! TGAATAATATTCTGTCAAAA+TGG - chr3_1:58471522-58471541 Msa0364910:CDS 20.0%
!! GAATAATATTCTGTCAAAAT+GGG - chr3_1:58471523-58471542 Msa0364910:CDS 20.0%
!!! AAAGAAATAGTTTTAAGTTG+TGG + chr3_1:58472243-58472262 None:intergenic 20.0%
!! ATTAACTCTTGTAATTACAA+CGG - chr3_1:58472292-58472311 Msa0364910:CDS 20.0%
!! CAATAGATTATGTTATTATC+AGG + chr3_1:58472426-58472445 None:intergenic 20.0%
!! GAATAAATCAAGTAGAAATA+TGG + chr3_1:58472544-58472563 None:intergenic 20.0%
!! AAGAAAAACTAAAAAAGAGA+AGG + chr3_1:58472799-58472818 None:intergenic 20.0%
!! TTATTCTTGCTAAATGTTAA+TGG - chr3_1:58473922-58473941 Msa0364910:intron 20.0%
!! GAACATGAAAATATACAATA+AGG + chr3_1:58474526-58474545 None:intergenic 20.0%
!! TGCTTTTCTTCTATGTAATA+TGG - chr3_1:58469880-58469899 Msa0364910:three_prime_UTR 25.0%
! GTAGATACTCTTACTAATTT+AGG - chr3_1:58470035-58470054 Msa0364910:intron 25.0%
! AAATTAAATGTGCATGGTTT+GGG + chr3_1:58470240-58470259 None:intergenic 25.0%
! AAAATTAAATGTGCATGGTT+TGG + chr3_1:58470241-58470260 None:intergenic 25.0%
! AGGTAAAAATTAAATGTGCA+TGG + chr3_1:58470246-58470265 None:intergenic 25.0%
!!! ATGCACATTTAATTTTTACC+TGG - chr3_1:58470245-58470264 Msa0364910:intron 25.0%
! TGACAATGTGTTTATAATTG+AGG - chr3_1:58470515-58470534 Msa0364910:intron 25.0%
! GACAATGTGTTTATAATTGA+GGG - chr3_1:58470516-58470535 Msa0364910:intron 25.0%
! AATCACAATCCTTCATATTA+CGG - chr3_1:58470699-58470718 Msa0364910:intron 25.0%
! CATTTATTTCCAAAACATCA+AGG + chr3_1:58470756-58470775 None:intergenic 25.0%
!!! TGATGTTTTGGAAATAAATG+TGG - chr3_1:58470756-58470775 Msa0364910:intron 25.0%
!!! AGAAACTGTTTTTGAAATAC+TGG - chr3_1:58470782-58470801 Msa0364910:intron 25.0%
! ACTTTAGATTAGTATTTCAG+TGG - chr3_1:58470927-58470946 Msa0364910:intron 25.0%
!! TTTGCTCTTTTCATATTTAC+AGG - chr3_1:58470980-58470999 Msa0364910:intron 25.0%
!! TAGTACAATCTTCTTTCTTT+TGG - chr3_1:58471069-58471088 Msa0364910:intron 25.0%
!! AGTACAATCTTCTTTCTTTT+GGG - chr3_1:58471070-58471089 Msa0364910:intron 25.0%
! AATGATTTGATTCAGATAGT+TGG - chr3_1:58471416-58471435 Msa0364910:intron 25.0%
!!! TTGGTGATGATAAAATATGA+TGG - chr3_1:58471435-58471454 Msa0364910:intron 25.0%
!! AATTTCTTTTCGATCTTACT+AGG - chr3_1:58471481-58471500 Msa0364910:CDS 25.0%
!! ATTTCTTTTCGATCTTACTA+GGG - chr3_1:58471482-58471501 Msa0364910:CDS 25.0%
!! TAAAGGAAGCATATATGTTA+AGG + chr3_1:58471751-58471770 None:intergenic 25.0%
! CTTACTTGATTATAGTATGT+TGG + chr3_1:58472054-58472073 None:intergenic 25.0%
!!! TGCATAAGAAAAAGTACTTT+TGG - chr3_1:58472211-58472230 Msa0364910:CDS 25.0%
!!! TAAGAAAAAGTACTTTTGGT+TGG - chr3_1:58472215-58472234 Msa0364910:CDS 25.0%
! AGAAGATAATCAACCTAAAA+GGG + chr3_1:58472366-58472385 None:intergenic 25.0%
! AAGAAGATAATCAACCTAAA+AGG + chr3_1:58472367-58472386 None:intergenic 25.0%
! ACTTTCTCCAGAAATATTTA+AGG + chr3_1:58473167-58473186 None:intergenic 25.0%
!! GCTTAACATCATCTAAAATT+AGG - chr3_1:58473529-58473548 Msa0364910:intron 25.0%
! AGGAAAAATTTAAACAAGTG+AGG + chr3_1:58473596-58473615 None:intergenic 25.0%
!! TGTTTAAATTTTTCCTGAAC+AGG - chr3_1:58473600-58473619 Msa0364910:intron 25.0%
!! GTTTAAATTTTTCCTGAACA+GGG - chr3_1:58473601-58473620 Msa0364910:intron 25.0%
! ATTTCCTATATTTCTTCTCA+GGG - chr3_1:58473798-58473817 Msa0364910:intron 25.0%
!!! TCAATTTTGTGTTGATACTT+TGG - chr3_1:58474070-58474089 Msa0364910:intron 25.0%
! CTTCAATGAAATCTTATCTT+TGG - chr3_1:58474130-58474149 Msa0364910:intron 25.0%
! AAATAAGTAAAGAGAATGGA+TGG + chr3_1:58474171-58474190 None:intergenic 25.0%
! CTGAAAATAAGTAAAGAGAA+TGG + chr3_1:58474175-58474194 None:intergenic 25.0%
!!! CATTCTCTTTACTTATTTTC+AGG - chr3_1:58474173-58474192 Msa0364910:intron 25.0%
ATAACAATAACCCATCTCTT+AGG + chr3_1:58469848-58469867 None:intergenic 30.0%
AACTTAGTGACTTAGTTAGT+TGG + chr3_1:58470207-58470226 None:intergenic 30.0%
AAAACAGCTTATAGCTTATG+TGG - chr3_1:58470320-58470339 Msa0364910:intron 30.0%
ACTAATCTAAACTAGGCTTT+AGG + chr3_1:58470428-58470447 None:intergenic 30.0%
ACAACTTTACCGTAATATGA+AGG + chr3_1:58470711-58470730 None:intergenic 30.0%
! CATGAAAAACCTTGATGTTT+TGG - chr3_1:58470744-58470763 Msa0364910:intron 30.0%
!!! AACTGTTTTTGAAATACTGG+CGG - chr3_1:58470785-58470804 Msa0364910:intron 30.0%
! GTACAATCTTCTTTCTTTTG+GGG - chr3_1:58471071-58471090 Msa0364910:intron 30.0%
GGCTTGAAGTTCAAAATTAA+GGG + chr3_1:58471152-58471171 None:intergenic 30.0%
TGGCTTGAAGTTCAAAATTA+AGG + chr3_1:58471153-58471172 None:intergenic 30.0%
! TAATTTTGAACTTCAAGCCA+TGG - chr3_1:58471153-58471172 Msa0364910:intron 30.0%
ACTAATATCACTGCCAATAT+CGG + chr3_1:58471396-58471415 None:intergenic 30.0%
ATGAATTAGGAAAGGTGAAA+AGG + chr3_1:58471624-58471643 None:intergenic 30.0%
!!! GAACAGTTTGGTTTTGTATA+TGG - chr3_1:58471687-58471706 Msa0364910:intron 30.0%
! GTTTTGTATATGGCTTAGTA+AGG - chr3_1:58471697-58471716 Msa0364910:intron 30.0%
CGTGTACATATATTTCGTAA+AGG + chr3_1:58471768-58471787 None:intergenic 30.0%
!!! CCAGTTTTCTGTGTTTTTTT+GGG - chr3_1:58471828-58471847 Msa0364910:intron 30.0%
! ATTAATTTTGTCGAAACCAC+CGG - chr3_1:58471963-58471982 Msa0364910:intron 30.0%
GAACTTTCATTCTTCTTACA+TGG - chr3_1:58472025-58472044 Msa0364910:intron 30.0%
! TGTTTGCTAAGTATGTTGTT+TGG - chr3_1:58472091-58472110 Msa0364910:intron 30.0%
AAGTTCAATCTTACAGAATC+TGG - chr3_1:58472642-58472661 Msa0364910:CDS 30.0%
! ATGGCAATTTCTGCAAATTT+TGG - chr3_1:58472693-58472712 Msa0364910:CDS 30.0%
GAGAAGGAAAAAAAGTTGAA+GGG + chr3_1:58472783-58472802 None:intergenic 30.0%
AGAGAAGGAAAAAAAGTTGA+AGG + chr3_1:58472784-58472803 None:intergenic 30.0%
ATTGAGTTAAGAAGAAAGCA+GGG + chr3_1:58472998-58473017 None:intergenic 30.0%
AATTGAGTTAAGAAGAAAGC+AGG + chr3_1:58472999-58473018 None:intergenic 30.0%
!!! GTTTGCTTCTTGTTTTGTAT+TGG - chr3_1:58473071-58473090 Msa0364910:intron 30.0%
GTCTCATCCTTAAATATTTC+TGG - chr3_1:58473157-58473176 Msa0364910:CDS 30.0%
TTGCGAATAGCAGAAAATAA+TGG - chr3_1:58473224-58473243 Msa0364910:intron 30.0%
AGAAAGTTCAATGGAACTAA+TGG + chr3_1:58473569-58473588 None:intergenic 30.0%
ATCCACTTACAGAATATCTA+GGG + chr3_1:58473678-58473697 None:intergenic 30.0%
AATCCACTTACAGAATATCT+AGG + chr3_1:58473679-58473698 None:intergenic 30.0%
CATTTCCTATATTTCTTCTC+AGG - chr3_1:58473797-58473816 Msa0364910:intron 30.0%
TTTCCTATATTTCTTCTCAG+GGG - chr3_1:58473799-58473818 Msa0364910:intron 30.0%
!! TTTACTTATTTTCAGGCTCA+TGG - chr3_1:58474180-58474199 Msa0364910:intron 30.0%
!! TTACTTATTTTCAGGCTCAT+GGG - chr3_1:58474181-58474200 Msa0364910:intron 30.0%
!! ATGTTTTCAAGGTTTCAGTT+GGG - chr3_1:58474207-58474226 Msa0364910:intron 30.0%
! TTAGTCTATGATCTTTTCAC+CGG + chr3_1:58474273-58474292 None:intergenic 30.0%
AGAACTACAAGAGAAGAAAA+CGG - chr3_1:58474360-58474379 Msa0364910:CDS 30.0%
! TCTTCATCAGAATTTTATGC+TGG - chr3_1:58474400-58474419 Msa0364910:CDS 30.0%
! GAATTTTATGCTGGACAAAA+TGG - chr3_1:58474409-58474428 Msa0364910:CDS 30.0%
! GGACAAAATGGTAAATTTTG+TGG - chr3_1:58474421-58474440 Msa0364910:CDS 30.0%
! CATGTTCATTTTCCCATATT+TGG - chr3_1:58474539-58474558 Msa0364910:CDS 30.0%
! TTCATTTTCCCATATTTGGT+GGG - chr3_1:58474543-58474562 Msa0364910:CDS 30.0%
ATGAATTTCCCACCAAATAT+GGG + chr3_1:58474554-58474573 None:intergenic 30.0%
TATGAATTTCCCACCAAATA+TGG + chr3_1:58474555-58474574 None:intergenic 30.0%
TGTCACAAAATTGATGTGTT+TGG + chr3_1:58474625-58474644 None:intergenic 30.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr3_1:58469587-58469606 None:intergenic 35.0%
! ATGTTAAGTCTGAGAAGCAT+GGG - chr3_1:58469705-58469724 Msa0364910:three_prime_UTR 35.0%
GTTCATAAGAAATCAGTGAG+TGG - chr3_1:58469761-58469780 Msa0364910:three_prime_UTR 35.0%
TAAGAAATCAGTGAGTGGTT+TGG - chr3_1:58469766-58469785 Msa0364910:three_prime_UTR 35.0%
! GGAAGTTTTTCCTAAGAGAT+GGG - chr3_1:58469835-58469854 Msa0364910:three_prime_UTR 35.0%
CATAGAAGAGGTTGAAAAAG+TGG + chr3_1:58469920-58469939 None:intergenic 35.0%
! ATTTTTACCTGGTCTAGACT+AGG - chr3_1:58470256-58470275 Msa0364910:intron 35.0%
CTTATTTCCTTAAGTGCTCT+AGG - chr3_1:58470287-58470306 Msa0364910:intron 35.0%
AAAAGTTCAGCTAGAGAACA+AGG - chr3_1:58470652-58470671 Msa0364910:intron 35.0%
ACTGCAATTCATTGGAGTAT+TGG + chr3_1:58470877-58470896 None:intergenic 35.0%
AGATTGTACTAAACCTACAG+TGG + chr3_1:58471060-58471079 None:intergenic 35.0%
CAATCTGCAACAAGTATCTA+CGG + chr3_1:58471190-58471209 None:intergenic 35.0%
!! GGAAAGCAAGTTTTAGCATT+TGG - chr3_1:58471239-58471258 Msa0364910:CDS 35.0%
! TTTTAGCATTTGGCGTCATT+TGG - chr3_1:58471249-58471268 Msa0364910:CDS 35.0%
TAGAAAAGGCAATCCAAGTT+TGG + chr3_1:58471309-58471328 None:intergenic 35.0%
CTAATATCACTGCCAATATC+GGG + chr3_1:58471395-58471414 None:intergenic 35.0%
GACAGAATATTATTCATGGC+CGG + chr3_1:58471518-58471537 None:intergenic 35.0%
CCTTTCCTAATTCATCAGTA+CGG - chr3_1:58471629-58471648 Msa0364910:intron 35.0%
!!! TTTTACTCCTTTGGTTCTCT+AGG - chr3_1:58471665-58471684 Msa0364910:intron 35.0%
!! GCCAGTTTTCTGTGTTTTTT+TGG - chr3_1:58471827-58471846 Msa0364910:intron 35.0%
CCCAAAAAAACACAGAAAAC+TGG + chr3_1:58471831-58471850 None:intergenic 35.0%
AAGAAGCTGATTGCTACAAA+TGG - chr3_1:58471904-58471923 Msa0364910:intron 35.0%
! TGCTACAAATGGTTTTTCCA+AGG - chr3_1:58471915-58471934 Msa0364910:intron 35.0%
TTCGACAAAATTAATCCCCA+AGG + chr3_1:58471958-58471977 None:intergenic 35.0%
! TTTTAGGCGAAAGAACAAAG+AGG + chr3_1:58472334-58472353 None:intergenic 35.0%
! AAAAGGGAGACTAAGGTTTT+AGG + chr3_1:58472350-58472369 None:intergenic 35.0%
! AAAACCTTAGTCTCCCTTTT+AGG - chr3_1:58472350-58472369 Msa0364910:CDS 35.0%
GAACAATCGAATCACAAGAA+TGG + chr3_1:58472392-58472411 None:intergenic 35.0%
! GCAATTTCTGCAAATTTTGG+TGG - chr3_1:58472696-58472715 Msa0364910:CDS 35.0%
!! TTTCTGCAAATTTTGGTGGT+TGG - chr3_1:58472700-58472719 Msa0364910:CDS 35.0%
TGCAGATAATGCAAACAGTT+GGG - chr3_1:58472964-58472983 Msa0364910:CDS 35.0%
GAGACTATGTTGTCAAATAG+TGG + chr3_1:58473390-58473409 None:intergenic 35.0%
ATTCTACAAGACTCTGACTT+TGG + chr3_1:58473412-58473431 None:intergenic 35.0%
TCCACTTACAGAATATCTAG+GGG + chr3_1:58473677-58473696 None:intergenic 35.0%
! GTAAGTGGATTTATTGTTCC+TGG - chr3_1:58473688-58473707 Msa0364910:intron 35.0%
TCAATGCTACTGAAAATTCC+AGG + chr3_1:58473709-58473728 None:intergenic 35.0%
TATCCCCTGAGAAGAAATAT+AGG + chr3_1:58473805-58473824 None:intergenic 35.0%
!! GATGTTTTCAAGGTTTCAGT+TGG - chr3_1:58474206-58474225 Msa0364910:intron 35.0%
TGTGTTGTGTGACAAAGTAT+CGG + chr3_1:58474306-58474325 None:intergenic 35.0%
! GTTCATTTTCCCATATTTGG+TGG - chr3_1:58474542-58474561 Msa0364910:CDS 35.0%
CCAAAGACTGCTAATAAAAC+AGG + chr3_1:58474718-58474737 None:intergenic 35.0%
!! CCTGTTTTATTAGCAGTCTT+TGG - chr3_1:58474715-58474734 Msa0364910:five_prime_UTR 35.0%
GAAGAAGAAGAAGAAGGTGA+TGG + chr3_1:58469581-58469600 None:intergenic 40.0%
! TGAATGGTTGAGGTTTGTTC+TGG + chr3_1:58469624-58469643 None:intergenic 40.0%
GATGTTAAGTCTGAGAAGCA+TGG - chr3_1:58469704-58469723 Msa0364910:three_prime_UTR 40.0%
TCATACTTACTTGATGCCTC+TGG + chr3_1:58469731-58469750 None:intergenic 40.0%
!! AGAGGCATCAAGTAAGTATG+AGG - chr3_1:58469730-58469749 Msa0364910:three_prime_UTR 40.0%
! AAATCAGTGAGTGGTTTGGA+TGG - chr3_1:58469770-58469789 Msa0364910:three_prime_UTR 40.0%
! TTTGGATGGTGATGATGTTG+AGG - chr3_1:58469784-58469803 Msa0364910:three_prime_UTR 40.0%
TTAGGAAAAACTTCCCACCA+AGG + chr3_1:58469830-58469849 None:intergenic 40.0%
! GGGAAGTTTTTCCTAAGAGA+TGG - chr3_1:58469834-58469853 Msa0364910:three_prime_UTR 40.0%
AGACACAATACTGACACGTA+AGG - chr3_1:58470013-58470032 Msa0364910:CDS 40.0%
TAGCTAACACTTCTGATGGA+AGG + chr3_1:58470134-58470153 None:intergenic 40.0%
CAGATAGCTAACACTTCTGA+TGG + chr3_1:58470138-58470157 None:intergenic 40.0%
!! CATCAGAAGTGTTAGCTATC+TGG - chr3_1:58470136-58470155 Msa0364910:intron 40.0%
TGAAATACCTAGTCTAGACC+AGG + chr3_1:58470266-58470285 None:intergenic 40.0%
!! CCTTAAGTGCTCTAGGATAA+CGG - chr3_1:58470294-58470313 Msa0364910:intron 40.0%
!! GTTAAAGAGTACTCCCACAT+CGG - chr3_1:58470479-58470498 Msa0364910:intron 40.0%
TTAACACAACCCCACAAAAC+CGG + chr3_1:58470560-58470579 None:intergenic 40.0%
!! CAGCTAAGTTAGAGCGTTTT+TGG - chr3_1:58470629-58470648 Msa0364910:intron 40.0%
TCTCTCTCACTGCAATTCAT+TGG + chr3_1:58470885-58470904 None:intergenic 40.0%
TGTACTAAACCTACAGTGGT+GGG + chr3_1:58471056-58471075 None:intergenic 40.0%
TTGTACTAAACCTACAGTGG+TGG + chr3_1:58471057-58471076 None:intergenic 40.0%
! AGATACTTGTTGCAGATTGC+TGG - chr3_1:58471191-58471210 Msa0364910:CDS 40.0%
TTCTTTGTTGCACCCGATAT+TGG - chr3_1:58471380-58471399 Msa0364910:intron 40.0%
GAGAAGTAGATCATTAGCTC+TGG - chr3_1:58471559-58471578 Msa0364910:CDS 40.0%
!! TCATTAGCTCTGGTATACAG+TGG - chr3_1:58471569-58471588 Msa0364910:CDS 40.0%
! CCGTACTGATGAATTAGGAA+AGG + chr3_1:58471632-58471651 None:intergenic 40.0%
TCCTAATTCATCAGTACGGA+TGG - chr3_1:58471633-58471652 Msa0364910:intron 40.0%
CCAAAGGAGTAAAACACTGA+TGG + chr3_1:58471659-58471678 None:intergenic 40.0%
! CCATCAGTGTTTTACTCCTT+TGG - chr3_1:58471656-58471675 Msa0364910:intron 40.0%
AACTGTTCCTAGAGAACCAA+AGG + chr3_1:58471675-58471694 None:intergenic 40.0%
! TTGGTTCTCTAGGAACAGTT+TGG - chr3_1:58471675-58471694 Msa0364910:intron 40.0%
!!! TGTGTTTTTTTGGGACCTGT+AGG - chr3_1:58471837-58471856 Msa0364910:intron 40.0%
! CACTTGATGATCCAGAAATG+CGG - chr3_1:58471872-58471891 Msa0364910:intron 40.0%
! GCAATCAGCTTCTTTTCTTC+TGG + chr3_1:58471898-58471917 None:intergenic 40.0%
! TTTTTCCAAGGAACCTGTGA+AGG - chr3_1:58471927-58471946 Msa0364910:intron 40.0%
TATTTCCTTCACAGGTTCCT+TGG + chr3_1:58471935-58471954 None:intergenic 40.0%
AACCTGTGAAGGAAATACCT+TGG - chr3_1:58471938-58471957 Msa0364910:intron 40.0%
ACCTGTGAAGGAAATACCTT+GGG - chr3_1:58471939-58471958 Msa0364910:intron 40.0%
GCAAAAATGGGACACTATCA+GGG + chr3_1:58471995-58472014 None:intergenic 40.0%
! GCTAAGTATGTTGTTTGGTG+TGG - chr3_1:58472096-58472115 Msa0364910:intron 40.0%
TCAACCTAAAAGGGAGACTA+AGG + chr3_1:58472357-58472376 None:intergenic 40.0%
! GACTATTTTGCGTTTTACCG+TGG - chr3_1:58472664-58472683 Msa0364910:CDS 40.0%
GAAATTGCCATAGTAAGCCA+CGG + chr3_1:58472684-58472703 None:intergenic 40.0%
ATGCAAACAGTTGGGTTTCT+TGG - chr3_1:58472972-58472991 Msa0364910:CDS 40.0%
TTGAAGTTACTGTACGCAAC+AGG - chr3_1:58473251-58473270 Msa0364910:intron 40.0%
TGAAGTTACTGTACGCAACA+GGG - chr3_1:58473252-58473271 Msa0364910:intron 40.0%
! GTTGCAGAATATGAAGCATC+TGG + chr3_1:58473459-58473478 None:intergenic 40.0%
TGAGGAACGAGAAAGTTCAA+TGG + chr3_1:58473578-58473597 None:intergenic 40.0%
ATCTAGGGGCTATATCTTGA+TGG + chr3_1:58473663-58473682 None:intergenic 40.0%
!! AGAGAATGGATGGTGTCATA+TGG + chr3_1:58474161-58474180 None:intergenic 40.0%
! CTCATGGGATGATGTTTTCA+AGG - chr3_1:58474196-58474215 Msa0364910:intron 40.0%
GGTTTCAGTTGGGCTATATT+TGG - chr3_1:58474217-58474236 Msa0364910:intron 40.0%
TCAGTTGGGCTATATTTGGT+CGG - chr3_1:58474221-58474240 Msa0364910:intron 40.0%
! TCTTTTCACCGGTAGAGAAA+AGG + chr3_1:58474262-58474281 None:intergenic 40.0%
CTTGAGTACTTTCTCACAGA+AGG - chr3_1:58474337-58474356 Msa0364910:CDS 40.0%
! GTGATTACACGAGTCCTTTT+TGG - chr3_1:58474466-58474485 Msa0364910:CDS 40.0%
CTAATCCAATCCTTCTTCCA+AGG + chr3_1:58474492-58474511 None:intergenic 40.0%
! GAAGAAGAAGAAGGTGATGG+TGG + chr3_1:58469578-58469597 None:intergenic 45.0%
TTTGTTCTGGTACGTGACAG+TGG + chr3_1:58469611-58469630 None:intergenic 45.0%
ATGGAAACGGAGAAGGTGAA+TGG + chr3_1:58469640-58469659 None:intergenic 45.0%
! GGTGATGATGTTGAGGAAGA+AGG - chr3_1:58469791-58469810 Msa0364910:three_prime_UTR 45.0%
AAGGAACAAGCTCTTCACCT+TGG - chr3_1:58469810-58469829 Msa0364910:three_prime_UTR 45.0%
AACAAGCTCTTCACCTTGGT+GGG - chr3_1:58469814-58469833 Msa0364910:three_prime_UTR 45.0%
TACATGTCTCAACGTCATGC+CGG - chr3_1:58470082-58470101 Msa0364910:intron 45.0%
AGTGTCTGACACATAGAGTC+CGG + chr3_1:58470104-58470123 None:intergenic 45.0%
! CCGTTATCCTAGAGCACTTA+AGG + chr3_1:58470297-58470316 None:intergenic 45.0%
!! ACTAGGCTTTAGGCCCTATT+TGG + chr3_1:58470418-58470437 None:intergenic 45.0%
GACCATCTCTTATCCGATGT+GGG + chr3_1:58470495-58470514 None:intergenic 45.0%
AGACCATCTCTTATCCGATG+TGG + chr3_1:58470496-58470515 None:intergenic 45.0%
CAGTTGTACTCTGCTGACAT+TGG + chr3_1:58471029-58471048 None:intergenic 45.0%
CAATGTCAGCAGAGTACAAC+TGG - chr3_1:58471027-58471046 Msa0364910:intron 45.0%
GTACTAAACCTACAGTGGTG+GGG + chr3_1:58471055-58471074 None:intergenic 45.0%
TGAAACCACATACCTGAGTG+AGG + chr3_1:58471103-58471122 None:intergenic 45.0%
! TACTTGTTGCAGATTGCTGG+TGG - chr3_1:58471194-58471213 Msa0364910:CDS 45.0%
TGCAGATTGCTGGTGGAATA+TGG - chr3_1:58471201-58471220 Msa0364910:CDS 45.0%
GCAGATTGCTGGTGGAATAT+GGG - chr3_1:58471202-58471221 Msa0364910:CDS 45.0%
TAGCATTTGGCGTCATTTGG+TGG - chr3_1:58471252-58471271 Msa0364910:CDS 45.0%
AATCCAAGTTTGGCAGCTAC+CGG + chr3_1:58471299-58471318 None:intergenic 45.0%
GCACGGGCAACTAATAGAAA+AGG + chr3_1:58471323-58471342 None:intergenic 45.0%
ATTAGTTGCCCGTGCATTCA+TGG - chr3_1:58471328-58471347 Msa0364910:intron 45.0%
TTAGTTGCCCGTGCATTCAT+GGG - chr3_1:58471329-58471348 Msa0364910:intron 45.0%
ACCAATTCCCATGAATGCAC+GGG + chr3_1:58471339-58471358 None:intergenic 45.0%
CACCAATTCCCATGAATGCA+CGG + chr3_1:58471340-58471359 None:intergenic 45.0%
TGCATTCATGGGAATTGGTG+AGG - chr3_1:58471340-58471359 Msa0364910:intron 45.0%
!! TTACTAGGGTGTTGCTATGC+CGG - chr3_1:58471496-58471515 Msa0364910:CDS 45.0%
! TCTGTCAAAATGGGTTCCTG+TGG - chr3_1:58471532-58471551 Msa0364910:CDS 45.0%
GTATACAGTGGCATGTACCT+TGG - chr3_1:58471581-58471600 Msa0364910:CDS 45.0%
GAAAGGTGAAAAGGCCAATC+CGG + chr3_1:58471615-58471634 None:intergenic 45.0%
! GCCATCCGTACTGATGAATT+AGG + chr3_1:58471637-58471656 None:intergenic 45.0%
! CGCATTTCTGGATCATCAAG+TGG + chr3_1:58471874-58471893 None:intergenic 45.0%
! TTTTCTTCTGGCCGCATTTC+TGG + chr3_1:58471886-58471905 None:intergenic 45.0%
CCTGTGAAGGAAATACCTTG+GGG - chr3_1:58471940-58471959 Msa0364910:intron 45.0%
GGCAAAAATGGGACACTATC+AGG + chr3_1:58471996-58472015 None:intergenic 45.0%
!! TGTCCCATTTTTGCCACAAC+TGG - chr3_1:58472001-58472020 Msa0364910:intron 45.0%
!! GTCCCATTTTTGCCACAACT+GGG - chr3_1:58472002-58472021 Msa0364910:intron 45.0%
!! TCCCATTTTTGCCACAACTG+GGG - chr3_1:58472003-58472022 Msa0364910:intron 45.0%
TCCCCAGTTGTGGCAAAAAT+GGG + chr3_1:58472007-58472026 None:intergenic 45.0%
TTCCCCAGTTGTGGCAAAAA+TGG + chr3_1:58472008-58472027 None:intergenic 45.0%
GAATGAAAGTTCCCCAGTTG+TGG + chr3_1:58472017-58472036 None:intergenic 45.0%
! CGTTTTACCGTGGCTTACTA+TGG - chr3_1:58472674-58472693 Msa0364910:CDS 45.0%
CCTTGTAACAGATACACCTC+GGG + chr3_1:58472745-58472764 None:intergenic 45.0%
CCCTTGTAACAGATACACCT+CGG + chr3_1:58472746-58472765 None:intergenic 45.0%
CCGAGGTGTATCTGTTACAA+GGG - chr3_1:58472743-58472762 Msa0364910:intron 45.0%
ATCTGTTACAAGGGTTCGCA+AGG - chr3_1:58472752-58472771 Msa0364910:intron 45.0%
! GTTGTGTATGACTTGCAGTC+AGG - chr3_1:58473049-58473068 Msa0364910:intron 45.0%
AGGATGAGACACACAAGAAC+TGG + chr3_1:58473147-58473166 None:intergenic 45.0%
GCCCCTAGATATTCTGTAAG+TGG - chr3_1:58473673-58473692 Msa0364910:intron 45.0%
TCTTCTCAGGGGATATTGCT+CGG - chr3_1:58473810-58473829 Msa0364910:intron 45.0%
ACAGGTTACATTCTGCAGCA+TGG - chr3_1:58473882-58473901 Msa0364910:intron 45.0%
AGAGAAAAGGTTCCACACCA+CGG + chr3_1:58474249-58474268 None:intergenic 45.0%
! GTGTGGAACCTTTTCTCTAC+CGG - chr3_1:58474251-58474270 Msa0364910:intron 45.0%
!!! TCCTTTTTGGCCTTGGAAGA+AGG - chr3_1:58474479-58474498 Msa0364910:CDS 45.0%
TCCTTCTTCCAAGGCCAAAA+AGG + chr3_1:58474483-58474502 None:intergenic 45.0%
!! TTTGGCCTTGGAAGAAGGAT+TGG - chr3_1:58474484-58474503 Msa0364910:CDS 45.0%
ACGGAGAAGGTGAATGGTTG+AGG + chr3_1:58469634-58469653 None:intergenic 50.0%
AGGTGCAATGGAAACGGAGA+AGG + chr3_1:58469647-58469666 None:intergenic 50.0%
CACAGCAGGTGCAATGGAAA+CGG + chr3_1:58469653-58469672 None:intergenic 50.0%
GAACAAGCTCTTCACCTTGG+TGG - chr3_1:58469813-58469832 Msa0364910:three_prime_UTR 50.0%
CTCCCACATCGGATAAGAGA+TGG - chr3_1:58470490-58470509 Msa0364910:intron 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr3_1:58470547-58470566 Msa0364910:intron 50.0%
GCAGTGAGAGAGAGAACAGA+CGG - chr3_1:58470892-58470911 Msa0364910:intron 50.0%
TACCTCCTCACTCAGGTATG+TGG - chr3_1:58471095-58471114 Msa0364910:intron 50.0%
AACCACATACCTGAGTGAGG+AGG + chr3_1:58471100-58471119 None:intergenic 50.0%
! TGGAATATGGGCTGACACAG+TGG - chr3_1:58471214-58471233 Msa0364910:CDS 50.0%
! GGAATATGGGCTGACACAGT+GGG - chr3_1:58471215-58471234 Msa0364910:CDS 50.0%
CGGAGTTAGGATTGTGGCAA+CGG + chr3_1:58471279-58471298 None:intergenic 50.0%
CGTTGCCACAATCCTAACTC+CGG - chr3_1:58471277-58471296 Msa0364910:intron 50.0%
AGCTACCGGAGTTAGGATTG+TGG + chr3_1:58471285-58471304 None:intergenic 50.0%
GATCTACTTCTCTCTGCCAC+AGG + chr3_1:58471551-58471570 None:intergenic 50.0%
CAGTGGCATGTACCTTGGAT+CGG - chr3_1:58471586-58471605 Msa0364910:CDS 50.0%
ATGTACCTTGGATCGGTCAC+CGG - chr3_1:58471593-58471612 Msa0364910:intron 50.0%
! CCCCAAGGTATTTCCTTCAC+AGG + chr3_1:58471943-58471962 None:intergenic 50.0%
! TTTTGTCGAAACCACCGGTC+TGG - chr3_1:58471968-58471987 Msa0364910:intron 50.0%
TTTGTCGAAACCACCGGTCT+GGG - chr3_1:58471969-58471988 Msa0364910:intron 50.0%
CCCGAGGTGTATCTGTTACA+AGG - chr3_1:58472742-58472761 Msa0364910:intron 50.0%
!! GAGCCACATTGATTCTCCTG+TGG - chr3_1:58473019-58473038 Msa0364910:CDS 50.0%
CCACCACAGGAGAATCAATG+TGG + chr3_1:58473025-58473044 None:intergenic 50.0%
!! CCACATTGATTCTCCTGTGG+TGG - chr3_1:58473022-58473041 Msa0364910:intron 50.0%
ATACACAACACAGCCACCAC+AGG + chr3_1:58473038-58473057 None:intergenic 50.0%
AATGCGTCAGTTCCCTGTTC+AGG + chr3_1:58473616-58473635 None:intergenic 50.0%
ACTGACGCATTCTCTCAGTC+TGG - chr3_1:58473625-58473644 Msa0364910:intron 50.0%
CTCGGTCTATCCAATACTGC+TGG - chr3_1:58473828-58473847 Msa0364910:intron 50.0%
ATCCAATACTGCTGGAGTGC+TGG - chr3_1:58473836-58473855 Msa0364910:intron 50.0%
AACCTGTTGCTGCTGTTCCA+AGG + chr3_1:58473869-58473888 None:intergenic 50.0%
GCTATATTTGGTCGGAACCG+TGG - chr3_1:58474229-58474248 Msa0364910:intron 50.0%
!! ACACGAGTCCTTTTTGGCCT+TGG - chr3_1:58474472-58474491 Msa0364910:CDS 50.0%
CATTGCACCTGCTGTGTCAC+CGG - chr3_1:58469657-58469676 Msa0364910:three_prime_UTR 55.0%
TGTGTCACCGGAGAGGAAGA+GGG - chr3_1:58469669-58469688 Msa0364910:three_prime_UTR 55.0%
ACACCTTCCCTCTTCCTCTC+CGG + chr3_1:58469679-58469698 None:intergenic 55.0%
! GAGAGGAAGAGGGAAGGTGT+GGG - chr3_1:58469679-58469698 Msa0364910:three_prime_UTR 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr3_1:58470538-58470557 Msa0364910:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr3_1:58470546-58470565 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr3_1:58470546-58470565 Msa0364910:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr3_1:58470548-58470567 Msa0364910:intron 55.0%
AACTGGAACCCCACCACTGT+AGG - chr3_1:58471044-58471063 Msa0364910:intron 55.0%
TTGGGGATACCTCCTCACTC+AGG - chr3_1:58471088-58471107 Msa0364910:intron 55.0%
CTACGGATGCATCAGAGCCA+TGG + chr3_1:58471173-58471192 None:intergenic 55.0%
! ATATGGGCTGACACAGTGGG+AGG - chr3_1:58471218-58471237 Msa0364910:CDS 55.0%
GTTTGGCAGCTACCGGAGTT+AGG + chr3_1:58471292-58471311 None:intergenic 55.0%
ACTCCGGTAGCTGCCAAACT+TGG - chr3_1:58471293-58471312 Msa0364910:intron 55.0%
GCCCGTGCATTCATGGGAAT+TGG - chr3_1:58471335-58471354 Msa0364910:intron 55.0%
GTGGCGAACTATGTGCCTAC+AGG + chr3_1:58471855-58471874 None:intergenic 55.0%
GCAGACACTCTTGTAACCCG+AGG - chr3_1:58472726-58472745 Msa0364910:intron 55.0%
AGCCAGCACTCCAGCAGTAT+TGG + chr3_1:58473841-58473860 None:intergenic 55.0%
!! AATACTGCTGGAGTGCTGGC+TGG - chr3_1:58473840-58473859 Msa0364910:intron 55.0%
GTCCTTGGAACAGCAGCAAC+AGG - chr3_1:58473864-58473883 Msa0364910:intron 55.0%
ATTTGGTCGGAACCGTGGTG+TGG - chr3_1:58474234-58474253 Msa0364910:intron 55.0%
CGGTGACACAGCAGGTGCAA+TGG + chr3_1:58469659-58469678 None:intergenic 60.0%
TTCCTCTCCGGTGACACAGC+AGG + chr3_1:58469667-58469686 None:intergenic 60.0%
CTGTGTCACCGGAGAGGAAG+AGG - chr3_1:58469668-58469687 Msa0364910:three_prime_UTR 60.0%
TCACCGGAGAGGAAGAGGGA+AGG - chr3_1:58469673-58469692 Msa0364910:three_prime_UTR 60.0%
GGAGAGGAAGAGGGAAGGTG+TGG - chr3_1:58469678-58469697 Msa0364910:three_prime_UTR 60.0%
! GTCTGAGAAGCATGGGCCAG+AGG - chr3_1:58469712-58469731 Msa0364910:three_prime_UTR 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr3_1:58470551-58470570 None:intergenic 60.0%
CCAATCCGGTGACCGATCCA+AGG + chr3_1:58471601-58471620 None:intergenic 60.0%
CCTTGGATCGGTCACCGGAT+TGG - chr3_1:58471598-58471617 Msa0364910:intron 60.0%
GACACTATCAGGGCCCAGAC+CGG + chr3_1:58471985-58472004 None:intergenic 60.0%
CACCTGCTGTGTCACCGGAG+AGG - chr3_1:58469662-58469681 Msa0364910:three_prime_UTR 65.0%
ACTATCAGGGCCCAGACCGG+TGG + chr3_1:58471982-58472001 None:intergenic 65.0%
!! GGAGTGCTGGCTGGTGTCCT+TGG - chr3_1:58473849-58473868 Msa0364910:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 58469506 58474738 58469506 ID=Msa0364910;Name=Msa0364910
chr3_1 mRNA 58469506 58474738 58469506 ID=Msa0364910-mRNA-1;Parent=Msa0364910;Name=Msa0364910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=36|1|1|1|1|1|10|446|514
chr3_1 exon 58469506 58470049 58469506 ID=Msa0364910-mRNA-1:exon:11084;Parent=Msa0364910-mRNA-1
chr3_1 exon 58470341 58470425 58470341 ID=Msa0364910-mRNA-1:exon:11083;Parent=Msa0364910-mRNA-1
chr3_1 exon 58470557 58470622 58470557 ID=Msa0364910-mRNA-1:exon:11082;Parent=Msa0364910-mRNA-1
chr3_1 exon 58471174 58471275 58471174 ID=Msa0364910-mRNA-1:exon:11081;Parent=Msa0364910-mRNA-1
chr3_1 exon 58471471 58471608 58471471 ID=Msa0364910-mRNA-1:exon:11080;Parent=Msa0364910-mRNA-1
chr3_1 exon 58472176 58472385 58472176 ID=Msa0364910-mRNA-1:exon:11079;Parent=Msa0364910-mRNA-1
chr3_1 exon 58472526 58472741 58472526 ID=Msa0364910-mRNA-1:exon:11078;Parent=Msa0364910-mRNA-1
chr3_1 exon 58472883 58473038 58472883 ID=Msa0364910-mRNA-1:exon:11077;Parent=Msa0364910-mRNA-1
chr3_1 exon 58473135 58473242 58473135 ID=Msa0364910-mRNA-1:exon:11076;Parent=Msa0364910-mRNA-1
chr3_1 exon 58474337 58474738 58474337 ID=Msa0364910-mRNA-1:exon:11075;Parent=Msa0364910-mRNA-1
chr3_1 five_prime_UTR 58474703 58474738 58474703 ID=Msa0364910-mRNA-1:five_prime_utr;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58474337 58474702 58474337 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58473135 58473242 58473135 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58472883 58473038 58472883 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58472526 58472741 58472526 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58472176 58472385 58472176 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58471471 58471608 58471471 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58471174 58471275 58471174 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58470557 58470622 58470557 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58470341 58470425 58470341 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 CDS 58469952 58470049 58469952 ID=Msa0364910-mRNA-1:cds;Parent=Msa0364910-mRNA-1
chr3_1 three_prime_UTR 58469506 58469951 58469506 ID=Msa0364910-mRNA-1:three_prime_utr;Parent=Msa0364910-mRNA-1
Gene Sequence

>Msa0364910

ATGAGTAGCAGAGCTCTACTCTTCTCTTTCTCTCCACCATCACCTTCTTCTTCTTCTTCTTCTTCACCACTGTCACGTACCAGAACAAACCTCAACCATTCACCTTCTCCGTTTCCATTGCACCTGCTGTGTCACCGGAGAGGAAGAGGGAAGGTGTGGGCAGATGTTAAGTCTGAGAAGCATGGGCCAGAGGCATCAAGTAAGTATGAGGATCTTGCAGTTCATAAGAAATCAGTGAGTGGTTTGGATGGTGATGATGTTGAGGAAGAAGGAACAAGCTCTTCACCTTGGTGGGAAGTTTTTCCTAAGAGATGGGTTATTGTTATTCTGTGCTTCTCTGCTTTTCTTCTATGTAATATGGATAGAGTAAATATGAGCATTGCTATACTTCCAATGTCAGCAGAGTACAACTGGAACCCCACCACTGTAGGTTTAGTACAATCTTCTTTCTTTTGGGGATACCTCCTCACTCAGATTGCTGGTGGAATATGGGCTGACACAGTGGGAGGAAAGCAAGTTTTAGCATTTGGCGTCATTTGGTGGTCCGTTGCCACAATCCTAACTCCGGTAGCTGCCAAACTTGGATTGCCTTTTCTATTAGTTGCCCGTGCATTCATGGGAATTGGTGAGGGTGTTGCTATGCCGGCCATGAATAATATTCTGTCAAAATGGGTTCCTGTGGCAGAGAGAAGTAGATCATTAGCTCTGGTATACAGTGGCATGTACCTTGGATCGGTCACCGGATTGGCCTTTTCACCTTTCCTAATTCATCAGTACGGATGGCCATCAGTGTTTTACTCCTTTGGTTCTCTAGGAACAGTTTGGTTTTGTATATGGCTTAGTAAGGCACATAGTTCGCCACTTGATGATCCAGAAATGCGGCCAGAAGAAAAGAAGCTGATTGCTACAAATGGTTTTTCCAAGGAACCTGTGAAGGAAATACCTTGGGGATTAATTTTGTCGAAACCACCGGTCTGGGCCCTGATAGTGTCCCATTTTTGCCACAACTGGGGAACTTTCATTCTTCTTACATGGATGCCAACATACTATAATCAAGTGTTGAAGTTCAATCTTACAGAATCTGGACTATTTTGCGTTTTACCGTGGCTTACTATGGCAATTTCTGCAAATTTTGGTGGTTGGATTGCAGACACTCTTGTAACCCGAGGTGTATCTGTTACAAGGGTTCGCAAGATAATGCAAACAGTTGGGTTTCTTGGCCCTGCTTTCTTCTTAACTCAATTGAGCCACATTGATTCTCCTGTGGTGGCTGTGTTGTGTATGACTTGCAGTCAGGGAACTGACGCATTCTCTCAGTCTGGATTATATTCAAACCATCAAGATATAGCCCCTAGATATTCTGGGATATTGCTCGGTCTATCCAATACTGCTGGAGTGCTGGCTGGTGTCCTTGGAACAGCAGCAACAGGTTACATTCTGCAGCATGGCTCATGGGATGATGTTTTCAAGGTTTCAGTTGGGCTATATTTGGTCGGAACCGTGGTGTGGAACCTTTTCTCTACCGGTGAAAAGATCATAGACTAA

Protein sequence

>Msa0364910

MSSRALLFSFSPPSPSSSSSSSPLSRTRTNLNHSPSPFPLHLLCHRRGRGKVWADVKSEKHGPEASSKYEDLAVHKKSVSGLDGDDVEEEGTSSSPWWEVFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQVLAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEMRPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLTQLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID*