AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002110 MtrunA17_Chr1g0169361 95.918 784 8 1 1 760 1 784 0.0 1509
Msa0002110 MtrunA17_Chr6g0465161 35.536 681 338 17 133 760 78 710 6.92e-121 379
Msa0002110 MtrunA17_Chr4g0012061 39.871 464 246 5 132 565 100 560 2.44e-115 364
Msa0002110 MtrunA17_Chr7g0230671 35.008 597 319 10 132 684 88 659 1.98e-108 346
Msa0002110 MtrunA17_Chr3g0136721 35.294 510 274 8 183 653 134 626 3.67e-93 306
Msa0002110 MtrunA17_Chr1g0148121 37.174 460 248 7 148 576 95 544 3.35e-92 302
Msa0002110 MtrunA17_Chr1g0199921 30.658 486 281 9 129 561 135 617 3.97e-70 246
Msa0002110 MtrunA17_Chr3g0120791 31.891 439 245 9 142 534 150 580 5.49e-53 196
Msa0002110 MtrunA17_Chr8g0382921 30.521 403 216 10 187 528 198 597 1.79e-46 177
Msa0002110 MtrunA17_Chr3g0129101 30.216 417 225 10 173 528 195 606 5.26e-46 176
Msa0002110 MtrunA17_Chr5g0428451 24.868 378 221 7 187 505 128 501 3.85e-27 116
Msa0002110 MtrunA17_Chr4g0057941 28.223 287 151 8 177 419 62 337 2.38e-24 107
Msa0002110 MtrunA17_Chr4g0048521 26.923 286 160 7 195 431 229 514 6.21e-18 88.2
Msa0002110 MtrunA17_Chr8g0360981 26.460 291 155 8 187 422 210 496 8.95e-17 84.7
Msa0002110 MtrunA17_Chr2g0281061 24.742 291 173 6 187 431 218 508 2.09e-16 83.6
Msa0002110 MtrunA17_Chr3g0113361 23.762 404 229 12 174 511 76 466 2.50e-15 79.7
Msa0002110 MtrunA17_Chr5g0433911 25.461 271 157 9 198 431 77 339 4.44e-15 79.0
Msa0002110 MtrunA17_Chr1g0193751 24.382 283 172 9 197 445 240 514 9.35e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002110 AT3G24190.1 77.427 793 146 5 1 760 1 793 0.0 1204
Msa0002110 AT1G79600.1 40.215 465 245 5 132 566 95 556 3.16e-115 364
Msa0002110 AT1G71810.1 33.719 691 347 18 121 760 62 692 5.01e-111 353
Msa0002110 AT4G31390.1 37.013 462 250 7 148 578 131 582 4.89e-92 302
Msa0002110 AT5G24970.3 35.214 514 261 9 183 645 136 628 7.45e-92 303
Msa0002110 AT5G24970.2 35.214 514 261 9 183 645 175 667 4.59e-91 302
Msa0002110 AT4G31390.2 37.500 440 249 7 148 576 131 555 5.95e-90 296
Msa0002110 AT5G24970.1 34.630 514 261 10 183 645 136 625 1.60e-87 291
Msa0002110 AT4G31390.3 37.913 393 203 7 217 578 1 383 4.42e-79 262
Msa0002110 AT2G39190.2 32.708 480 272 8 129 560 142 618 8.20e-76 262
Msa0002110 AT3G07700.1 32.446 413 235 8 169 544 171 576 2.33e-53 197
Msa0002110 AT3G07700.2 32.446 413 235 8 169 544 171 576 2.33e-53 197
Msa0002110 AT3G07700.4 32.446 413 235 8 169 544 171 576 2.33e-53 197
Msa0002110 AT3G07700.3 31.532 444 227 11 169 544 171 605 2.96e-49 185
Msa0002110 AT5G64940.1 30.087 462 243 14 142 528 167 623 4.39e-45 173
Msa0002110 AT5G64940.2 30.087 462 243 14 142 528 167 623 4.39e-45 173
Msa0002110 AT2G39190.1 37.500 192 116 3 129 318 142 331 4.82e-29 120
Msa0002110 AT5G05200.1 25.926 378 217 7 187 505 129 502 1.27e-27 118
Msa0002110 AT4G24810.6 25.263 380 235 11 177 513 16 389 2.04e-26 113
Msa0002110 AT4G24810.1 25.263 380 235 11 177 513 16 389 2.04e-26 113
Msa0002110 AT4G24810.4 26.761 284 164 6 177 419 16 296 2.85e-26 110
Msa0002110 AT4G24810.5 26.761 284 164 6 177 419 16 296 3.63e-26 110
Msa0002110 AT4G24810.2 24.934 381 235 10 177 513 59 432 5.00e-26 112
Msa0002110 AT4G24810.3 24.742 388 234 11 177 513 16 396 8.56e-25 108
Msa0002110 AT5G50330.1 25.325 308 175 6 184 444 65 364 2.13e-22 102
Msa0002110 AT5G50330.2 25.000 296 188 7 177 444 59 348 1.80e-20 95.9
Msa0002110 AT1G65950.1 26.066 422 238 16 174 551 89 480 3.61e-19 92.4
Msa0002110 AT1G65950.2 29.630 270 147 10 174 407 89 351 4.96e-19 91.3
Msa0002110 AT1G11390.1 26.644 289 156 8 195 431 224 508 3.33e-18 89.7
Msa0002110 AT2G40090.1 26.899 316 182 11 175 443 79 392 5.10e-14 75.9
Msa0002110 AT4G01660.1 26.132 287 162 11 197 445 238 512 6.09e-14 75.9

Find 236 sgRNAs with CRISPR-Local

Find 605 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACTTTGCCCTTATAATT+AGG 0.089687 1_1:+3972205 Msa0002110:CDS
GCTTTACGTTACACTATATA+TGG 0.194317 1_1:+3972948 Msa0002110:CDS
TCAAGAACTCCAGCACTTTC+TGG 0.201641 1_1:-3974160 None:intergenic
CCCCGATAGCCCTAATTATA+AGG 0.235389 1_1:-3972215 None:intergenic
AGCTAGTATTACTGCATATT+GGG 0.247428 1_1:+3966249 Msa0002110:CDS
ATCCTCTCCACCTCCACTTT+TGG 0.254419 1_1:-3973042 None:intergenic
ATACTTTGCCCTTATAATTA+GGG 0.262467 1_1:+3972206 Msa0002110:CDS
ATCTCTCGGACAGGTATATA+AGG 0.270512 1_1:+3968166 Msa0002110:CDS
GATTAATGAACAAGGGTAAA+TGG 0.271358 1_1:-3974594 None:intergenic
AAACCTGTCAACGGTGTCTC+TGG 0.278838 1_1:+3965425 Msa0002110:CDS
AATTAGGGCTATCGGGGTTT+TGG 0.280919 1_1:+3972221 Msa0002110:CDS
AAGGGCCGCCTGAAGGAAAA+TGG 0.288141 1_1:+3968185 Msa0002110:CDS
TATATTATATTTATATATAC+TGG 0.288472 1_1:-3974570 None:intergenic
AATAGCCAGCATAATTGATT+TGG 0.293002 1_1:-3974671 None:intergenic
GTAGGTACCATACCGAAAAT+AGG 0.294048 1_1:-3974065 None:intergenic
CAGCTAGTATTACTGCATAT+TGG 0.297042 1_1:+3966248 Msa0002110:CDS
AATTATACCTGTGCAATATA+TGG 0.302271 1_1:-3972297 None:intergenic
ACGTGAAATTGTGACATCTT+TGG 0.305343 1_1:+3967340 Msa0002110:CDS
AGAACTTCTGCCAGTGTTGC+CGG 0.306484 1_1:+3974389 Msa0002110:CDS
GGTTGTTGTGGCGGTGGGAA+TGG 0.314697 1_1:-3965295 None:intergenic
GTATACTTGCTGTAAGTTCT+TGG 0.331390 1_1:-3969750 None:intergenic
CCCTTATAATTAGGGCTATC+GGG 0.332300 1_1:+3972214 Msa0002110:CDS
CGTGAAATTGTGACATCTTT+GGG 0.332945 1_1:+3967341 Msa0002110:CDS
TTTATTTGCATTCAGAGAAT+TGG 0.338434 1_1:+3965525 Msa0002110:intron
GTTGTTGTGGCGGTGGGAAT+GGG 0.338778 1_1:-3965294 None:intergenic
GGATCTAAATTGACTCCATC+TGG 0.344181 1_1:-3972054 None:intergenic
TTATTTCAGCTGCTTGATAC+TGG 0.344397 1_1:+3970625 Msa0002110:intron
TTCTTAGCAGATTATCTTCT+CGG 0.345784 1_1:+3974439 Msa0002110:CDS
AACTTTATCCTCTTCAGTTA+TGG 0.348424 1_1:-3974123 None:intergenic
CTAATTATAAGGGCAAAGTA+TGG 0.349214 1_1:-3972204 None:intergenic
TTTAACGAAGTCTTTCACTA+TGG 0.351984 1_1:-3972019 None:intergenic
CCTGAAGGAAAATGGGGATT+TGG 0.353495 1_1:+3968193 Msa0002110:CDS
GTCTTTGACCAGGCTTTAGA+AGG 0.356423 1_1:+3972099 Msa0002110:CDS
TGTGGGTGGATTAAGCATTA+AGG 0.366442 1_1:-3974511 None:intergenic
TTGACCGACGATCAAAAGTA+TGG 0.371660 1_1:+3971952 Msa0002110:CDS
GCCCTTATAATTAGGGCTAT+CGG 0.378622 1_1:+3972213 Msa0002110:CDS
AGAGAGAAGTTTGGAGGGAG+TGG 0.380310 1_1:-3965115 None:intergenic
CAGGTCTTTCTTCATCATTT+CGG 0.380540 1_1:-3968569 None:intergenic
CCGGTCAGAATATCTCTTGC+CGG 0.382765 1_1:+3973103 Msa0002110:CDS
CCATTGATTTATTCATTATC+CGG 0.385394 1_1:+3968258 Msa0002110:CDS
TACACTATATATGGGAAATC+TGG 0.386187 1_1:+3972957 Msa0002110:CDS
GCAACACTGGCAGAAGTTCT+TGG 0.389343 1_1:-3974386 None:intergenic
ACGAAGTCTTTCACTATGGC+TGG 0.396425 1_1:-3972015 None:intergenic
GTGCAGTTATTATCTGTTGC+TGG 0.398582 1_1:+3966304 Msa0002110:CDS
TTTGCAAGCACTGGCAAGAT+AGG 0.409252 1_1:-3972075 None:intergenic
GAGGGAGGTTGTTGTGGCGG+TGG 0.410846 1_1:-3965301 None:intergenic
CATTATCCGGAACCTTGGTT+TGG 0.410931 1_1:+3968271 Msa0002110:CDS
AGAGACACCGTTGACAGGTT+TGG 0.413955 1_1:-3965423 None:intergenic
TATGTGAATGAAGGTGAAAA+TGG 0.419960 1_1:+3968535 Msa0002110:intron
CCGTCAACGGTTCTTCTTCA+AGG 0.422670 1_1:+3965390 Msa0002110:CDS
TAAGAGAGTGAGAGCGCAAA+TGG 0.424054 1_1:+3965566 Msa0002110:CDS
TTGGAAGGGATAGCTTTAGT+AGG 0.425825 1_1:+3972240 Msa0002110:CDS
CCCCTCCACCTTCTAAAGCC+TGG 0.432654 1_1:-3972107 None:intergenic
AGCTTGGGCTTATTACTAAC+CGG 0.433633 1_1:+3973084 Msa0002110:CDS
TGGAAAGCTACCGGCGGCAA+TGG 0.437249 1_1:-3968035 None:intergenic
GGTCCAGCATACATAAAACT+TGG 0.438925 1_1:+3967362 Msa0002110:CDS
GGCTCTTCGAAAATTTCCTC+AGG 0.440365 1_1:+3968292 Msa0002110:CDS
CCCGATAGCCCTAATTATAA+GGG 0.441218 1_1:-3972214 None:intergenic
GATAATCTGCTAAGAACATC+AGG 0.444598 1_1:-3974432 None:intergenic
GCCCGTGTTTCCACTGGCTG+CGG 0.444691 1_1:-3973152 None:intergenic
GTAGTGACAGGAGCAGGTTT+AGG 0.446333 1_1:-3965368 None:intergenic
TCATCAACAATGGCAAAATC+AGG 0.448007 1_1:-3972267 None:intergenic
AGAGGATCTGAAAGGGAGTA+TGG 0.453042 1_1:+3973058 Msa0002110:CDS
GCTGCAGGTGACAGTATATC+AGG 0.453190 1_1:-3967404 None:intergenic
AATGGAAGAAGATGAACAAT+TGG 0.455274 1_1:+3965584 Msa0002110:CDS
AAACTTGCAATACTTGACTT+TGG 0.456974 1_1:+3970700 Msa0002110:CDS
GAAGAGCCAAACCAAGGTTC+CGG 0.457788 1_1:-3968277 None:intergenic
TTCTCGGGTTGCGTGGGATG+TGG 0.458420 1_1:+3966336 Msa0002110:CDS
GAGGTGGAGAGGATCTGAAA+GGG 0.458984 1_1:+3973051 Msa0002110:CDS
TGCAACTCTGTCATTGCTGC+AGG 0.460173 1_1:-3967419 None:intergenic
ATAACCAGAATGAGGTTGCC+AGG 0.461543 1_1:+3967306 Msa0002110:intron
TCTGTCAAGCACATCTAGTC+AGG 0.463598 1_1:+3974196 Msa0002110:CDS
ATTGTGTATATTTGACAGAA+TGG 0.465438 1_1:+3974534 Msa0002110:three_prime_UTR
AGGGAGGTTGTTGTGGCGGT+GGG 0.465926 1_1:-3965300 None:intergenic
CTTTACGTTACACTATATAT+GGG 0.466517 1_1:+3972949 Msa0002110:CDS
CCTCGTCCAAAAGAAATTCT+CGG 0.466532 1_1:-3973214 None:intergenic
GTCGGAGAATTAGTTAATGT+TGG 0.469559 1_1:+3969840 Msa0002110:CDS
ATTTGCAGATGATGTGGCTA+TGG 0.471517 1_1:+3967949 Msa0002110:CDS
AGTCATCTGCTACCTAAAAC+AGG 0.471762 1_1:+3969863 Msa0002110:CDS
AGGGCTGCCCGTGTTTCCAC+TGG 0.474496 1_1:-3973158 None:intergenic
GTGAAAGACTTCGTTAAACT+TGG 0.475881 1_1:+3972024 Msa0002110:CDS
TATTTATATATACTGGTATG+TGG 0.478038 1_1:-3974563 None:intergenic
TTCGGTATGGTACCTACCAT+TGG 0.478269 1_1:+3974071 Msa0002110:CDS
AGGGCCGCCTGAAGGAAAAT+GGG 0.482279 1_1:+3968186 Msa0002110:CDS
GTAACTGTCTCGAGAACAAA+AGG 0.487145 1_1:-3968236 None:intergenic
AACCTGTCAACGGTGTCTCT+GGG 0.487214 1_1:+3965426 Msa0002110:CDS
ACACCGTTGACAGGTTTGGC+AGG 0.488797 1_1:-3965419 None:intergenic
CGATTCCGCGGTAGATGAGT+TGG 0.493275 1_1:-3965253 None:intergenic
CCGGATAATGAATAAATCAA+TGG 0.495772 1_1:-3968258 None:intergenic
TTTATTACAGCTGCCAAAAG+TGG 0.497079 1_1:+3973029 Msa0002110:CDS
GACCAGGCTTTAGAAGGTGG+AGG 0.497384 1_1:+3972105 Msa0002110:CDS
TGCATTCTGAACTCCTAGTA+AGG 0.499806 1_1:-3974039 None:intergenic
GTAAGAATTATGTCCTTACT+AGG 0.500477 1_1:+3974026 Msa0002110:CDS
AAAGGGAGTATGGCTGAGCT+TGG 0.501167 1_1:+3973068 Msa0002110:CDS
TAGGTACCATACCGAAAATA+GGG 0.501824 1_1:-3974064 None:intergenic
TCTTAGCAGATTATCTTCTC+GGG 0.503708 1_1:+3974440 Msa0002110:CDS
TAATTATAAGGGCAAAGTAT+GGG 0.504028 1_1:-3972203 None:intergenic
GCAGAGATGCCCGGCAACAC+TGG 0.505198 1_1:-3974399 None:intergenic
CGGTCAGAATATCTCTTGCC+GGG 0.507660 1_1:+3973104 Msa0002110:CDS
TTTATCCTCTTCAGTTATGG+TGG 0.508378 1_1:-3974120 None:intergenic
GGAAAGCTACCGGCGGCAAT+GGG 0.509268 1_1:-3968034 None:intergenic
GTGCTGGAGTTCTTGACTGC+AGG 0.510421 1_1:+3974167 Msa0002110:CDS
GGAGGGTTCTTACAACAGAA+TGG 0.511423 1_1:+3969778 Msa0002110:CDS
GGAGGTGGAGAGGATCTGAA+AGG 0.512007 1_1:+3973050 Msa0002110:CDS
TTCACGTATTTCAATAGCCC+TGG 0.512127 1_1:-3967324 None:intergenic
CCTTGAAGAAGAACCGTTGA+CGG 0.513312 1_1:-3965390 None:intergenic
TGCTGTGACAAGGGAACAAA+TGG 0.515122 1_1:+3974004 Msa0002110:CDS
AACCGCAGCCAGTGGAAACA+CGG 0.515912 1_1:+3973150 Msa0002110:CDS
ATAAGCCAAATCAATTATGC+TGG 0.516259 1_1:+3974666 Msa0002110:three_prime_UTR
CAATATGCAGTAATACTAGC+TGG 0.516377 1_1:-3966247 None:intergenic
AATATGATCCGCACTCCTGA+TGG 0.516841 1_1:+3970676 Msa0002110:CDS
TGTCAAATATACACAATTGT+GGG 0.517727 1_1:-3974528 None:intergenic
GCTCTAATTGAAGAGGAACT+TGG 0.518860 1_1:+3967971 Msa0002110:CDS
TTACTGATAGAGACTCTTGA+CGG 0.519048 1_1:+3972902 Msa0002110:intron
GAACTTCTGCCAGTGTTGCC+GGG 0.520134 1_1:+3974390 Msa0002110:CDS
CGGTGGCGACAGCGGAGATA+CGG 0.520949 1_1:-3965343 None:intergenic
CTGTCAAATATACACAATTG+TGG 0.521036 1_1:-3974529 None:intergenic
GCTTGCAAAGGTCTTTGACC+AGG 0.523145 1_1:+3972089 Msa0002110:CDS
ACCCCAGAGACACCGTTGAC+AGG 0.523907 1_1:-3965428 None:intergenic
TCAAAGACCTTTGCAAGCAC+TGG 0.524525 1_1:-3972084 None:intergenic
TCTCTCGGACAGGTATATAA+GGG 0.528745 1_1:+3968167 Msa0002110:CDS
GACGGAGAGGGAGGTTGTTG+TGG 0.530054 1_1:-3965307 None:intergenic
TTATTCATTATCCGGAACCT+TGG 0.531153 1_1:+3968266 Msa0002110:CDS
TCCTTCATTTGCAGATGATG+TGG 0.531156 1_1:+3967943 Msa0002110:CDS
TTGACGGTAGTGACAGGAGC+AGG 0.531550 1_1:-3965374 None:intergenic
GATGTTACAGACTGGAATCC+CGG 0.531571 1_1:-3973122 None:intergenic
CGGATGAATCCCCTCGGCTA+AGG 0.532282 1_1:+3972922 Msa0002110:CDS
TTTGACCAGGCTTTAGAAGG+TGG 0.532307 1_1:+3972102 Msa0002110:CDS
AATTGCTCATCTCATCCATC+GGG 0.532594 1_1:+3971987 Msa0002110:CDS
AAACATCAACTTTCAGGAGC+TGG 0.534626 1_1:+3972134 Msa0002110:CDS
TTTCATGCTGATCCTCACCC+GGG 0.534686 1_1:+3970652 Msa0002110:CDS
ACCAGGCTTTAGAAGGTGGA+GGG 0.538065 1_1:+3972106 Msa0002110:CDS
GATTCCGCGGTAGATGAGTT+GGG 0.538602 1_1:-3965252 None:intergenic
GTGGGATGTGGTTAACAAGA+AGG 0.539335 1_1:+3966348 Msa0002110:CDS
GAGAATTGGTGATGTTTCGA+AGG 0.539608 1_1:+3965539 Msa0002110:intron
GCTACCGGCGGCAATGGGAG+AGG 0.540075 1_1:-3968029 None:intergenic
AAACTTGGTTTCATCCCAGA+TGG 0.540981 1_1:+3972039 Msa0002110:CDS
GCCACATCATCTGCAAATGA+AGG 0.542980 1_1:-3967944 None:intergenic
GAATGGGACGAGCGGAGTAA+AGG 0.543025 1_1:-3965278 None:intergenic
AAGGGAGTATGGCTGAGCTT+GGG 0.543384 1_1:+3973069 Msa0002110:CDS
GTATTGGACTCACCTGTGGC+AGG 0.546086 1_1:-3968588 None:intergenic
TTATCCTCTTCAGTTATGGT+GGG 0.547564 1_1:-3974119 None:intergenic
CCGCCTGCCAAACCTGTCAA+CGG 0.550645 1_1:+3965416 Msa0002110:CDS
TCTTCATCATTTCGGCGAAG+CGG 0.553476 1_1:-3968561 None:intergenic
ATATGCAGCATCTCTCGGAC+AGG 0.554501 1_1:+3968157 Msa0002110:intron
AAGTAGTGAATTTCTACCAT+TGG 0.554621 1_1:+3966216 Msa0002110:CDS
GAACCGTTGACGGTAGTGAC+AGG 0.554849 1_1:-3965380 None:intergenic
CAATTGCTCATCTCATCCAT+CGG 0.555375 1_1:+3971986 Msa0002110:CDS
AATTATAAGGGCAAAGTATG+GGG 0.557155 1_1:-3972202 None:intergenic
ACAACCTCCCTCTCCGTCGC+CGG 0.558871 1_1:+3965312 Msa0002110:CDS
GGTATATAAGGGCCGCCTGA+AGG 0.559240 1_1:+3968178 Msa0002110:CDS
CAGAGCAAAGAAAGCAATGT+CGG 0.560609 1_1:+3969822 Msa0002110:CDS
GGGCATTGATGCTGTGACAA+GGG 0.561217 1_1:+3973995 Msa0002110:CDS
ACCGCAGCCAGTGGAAACAC+GGG 0.564302 1_1:+3973151 Msa0002110:CDS
GGTTAACAAGAAGGTTAAAG+AGG 0.566410 1_1:+3966357 Msa0002110:CDS
ATGCGAGTTGCAACGGAGCG+AGG 0.567245 1_1:-3966280 None:intergenic
CTGCACAATGCGAGTTGCAA+CGG 0.568797 1_1:-3966287 None:intergenic
CGGATCATATTCCCCGGGTG+AGG 0.570070 1_1:-3970664 None:intergenic
TAATGATTCGCTCTTTGCTG+AGG 0.570101 1_1:+3965641 Msa0002110:CDS
ACAGCTGCCAAAAGTGGAGG+TGG 0.572452 1_1:+3973035 Msa0002110:CDS
AACGCCGGCGACGGAGAGGG+AGG 0.573158 1_1:-3965316 None:intergenic
AAGAGGAACTTGGTCAGCCA+TGG 0.574058 1_1:+3967981 Msa0002110:CDS
GAAACATATGCAGCATCTCT+CGG 0.574141 1_1:+3968152 Msa0002110:intron
CCTTATAATTAGGGCTATCG+GGG 0.576502 1_1:+3972215 Msa0002110:CDS
GAACAATGTCCAGAAAGTGC+TGG 0.577732 1_1:+3974151 Msa0002110:CDS
AGCCTATCCATATATTGCAC+AGG 0.579392 1_1:+3972290 Msa0002110:CDS
TGCCAAAAGTGGAGGTGGAG+AGG 0.579882 1_1:+3973040 Msa0002110:CDS
TAGAACGCCGGCGACGGAGA+GGG 0.580222 1_1:-3965319 None:intergenic
GGAGTGCGGATCATATTCCC+CGG 0.581565 1_1:-3970670 None:intergenic
CCGTTGACAGGTTTGGCAGG+CGG 0.583407 1_1:-3965416 None:intergenic
TACGGTTAGAACGCCGGCGA+CGG 0.585185 1_1:-3965325 None:intergenic
CTTACAACAGAATGGATTGA+CGG 0.585861 1_1:+3969786 Msa0002110:CDS
TATACCCACCATAACTGAAG+AGG 0.586389 1_1:+3974115 Msa0002110:CDS
ATTACAGCTGCCAAAAGTGG+AGG 0.587817 1_1:+3973032 Msa0002110:CDS
GATCTAAATTGACTCCATCT+GGG 0.588365 1_1:-3972053 None:intergenic
GTAAAGCACTCCTTAGCCGA+GGG 0.589316 1_1:-3972932 None:intergenic
GCTCCTGTCACTACCGTCAA+CGG 0.591944 1_1:+3965377 Msa0002110:CDS
GGCTTAAAGCGTCCAATGGT+AGG 0.593364 1_1:-3974083 None:intergenic
CCAGGCTTTAGAAGGTGGAG+GGG 0.593525 1_1:+3972107 Msa0002110:CDS
AGCACTTTAGCAGAGATGCC+CGG 0.594680 1_1:-3974408 None:intergenic
ATGGTGGGTATAAGAGCTGC+GGG 0.595967 1_1:-3974104 None:intergenic
GATTGACTGCAGATTGTCAA+GGG 0.597608 1_1:+3973975 Msa0002110:intron
AGGGCATTGATGCTGTGACA+AGG 0.597768 1_1:+3973994 Msa0002110:CDS
GCTATAATGATTAATGAACA+AGG 0.600527 1_1:-3974602 None:intergenic
GGCTATGGCTCTAATTGAAG+AGG 0.600972 1_1:+3967964 Msa0002110:CDS
TATCCTAAAAGGATAATCAA+AGG 0.601605 1_1:-3972178 None:intergenic
CCGGCAAGAGATATTCTGAC+CGG 0.601734 1_1:-3973103 None:intergenic
TCAACCTCTCCCATTGCCGC+CGG 0.601960 1_1:+3968025 Msa0002110:CDS
ATCTCAACAACCGCAGCCAG+TGG 0.604477 1_1:+3973142 Msa0002110:CDS
TGTGGAAGTTGTTGTATGTG+TGG 0.606184 1_1:-3965078 None:intergenic
GGCGGTGGGAATGGGACGAG+CGG 0.606626 1_1:-3965286 None:intergenic
CGGAGATACGGTTAGAACGC+CGG 0.607587 1_1:-3965331 None:intergenic
GTGGTTGTTGTAAAGAAGTG+TGG 0.608871 1_1:-3965096 None:intergenic
GGAGAGGGAGGTTGTTGTGG+CGG 0.608879 1_1:-3965304 None:intergenic
TACCTGTGCAATATATGGAT+AGG 0.609388 1_1:-3972292 None:intergenic
TAACCAGAATGAGGTTGCCA+GGG 0.609399 1_1:+3967307 Msa0002110:intron
TGTTCAGCTACGTCTTGTTG+AGG 0.610684 1_1:+3965668 Msa0002110:CDS
TGGATAGGCTTCATCAACAA+TGG 0.610971 1_1:-3972277 None:intergenic
TGCGGGCTTAAAGCGTCCAA+TGG 0.612041 1_1:-3974087 None:intergenic
CTATGGCTGGATAATCCCGA+TGG 0.613934 1_1:-3972002 None:intergenic
GCTAGTATTACTGCATATTG+GGG 0.615592 1_1:+3966250 Msa0002110:CDS
CAGTTATTATCTGTTGCTGG+AGG 0.617050 1_1:+3966307 Msa0002110:CDS
TGATTGACTGCAGATTGTCA+AGG 0.617529 1_1:+3973974 Msa0002110:intron
TATCTTGCCAGTGCTTGCAA+AGG 0.619857 1_1:+3972077 Msa0002110:CDS
TTTAGGATCGGTGGCGACAG+CGG 0.620973 1_1:-3965351 None:intergenic
AGGAGCAGGTTTAGGATCGG+TGG 0.621321 1_1:-3965360 None:intergenic
GACAGGAGCAGGTTTAGGAT+CGG 0.623701 1_1:-3965363 None:intergenic
GTCCAGCATACATAAAACTT+GGG 0.627157 1_1:+3967363 Msa0002110:CDS
CAAATATACACAATTGTGGG+TGG 0.628614 1_1:-3974525 None:intergenic
TATGGTGGGTATAAGAGCTG+CGG 0.631457 1_1:-3974105 None:intergenic
ACCTGTCAACGGTGTCTCTG+GGG 0.632413 1_1:+3965427 Msa0002110:CDS
ACAAGAATTTAACTTGCCTG+AGG 0.632804 1_1:-3968308 None:intergenic
CTTACAGCAAGTATACATCA+AGG 0.633014 1_1:+3969757 Msa0002110:CDS
CGTAAAGCACTCCTTAGCCG+AGG 0.633199 1_1:-3972933 None:intergenic
GTTGTTGAGATGTTACAGAC+TGG 0.636049 1_1:-3973130 None:intergenic
AGAAGTTCTTGGATAATCTG+AGG 0.636314 1_1:-3974375 None:intergenic
AGTCTTATGAGAGGTCTTCG+TGG 0.637623 1_1:+3965609 Msa0002110:CDS
GAGTAAACAGCATTCCACAA+TGG 0.640499 1_1:+3965217 Msa0002110:exon
GAGTGCGGATCATATTCCCC+GGG 0.640776 1_1:-3970669 None:intergenic
TTAGAACGCCGGCGACGGAG+AGG 0.642104 1_1:-3965320 None:intergenic
GATGAAGAAAGACCTGCCAC+AGG 0.643598 1_1:+3968576 Msa0002110:CDS
CTATAATGATTAATGAACAA+GGG 0.644603 1_1:-3974601 None:intergenic
GGATGATGCTGTATCCATTG+TGG 0.645105 1_1:-3965231 None:intergenic
CTAGCTGGATCATACACCAA+TGG 0.649269 1_1:-3966232 None:intergenic
TCTTGACGGATGAATCCCCT+CGG 0.651670 1_1:+3972916 Msa0002110:CDS
AGCTGTAATAAAATTCTCGA+AGG 0.654599 1_1:-3973018 None:intergenic
CAGCAAGTATACATCAAGGA+GGG 0.655370 1_1:+3969761 Msa0002110:CDS
ATTATAAGGGCAAAGTATGG+GGG 0.655388 1_1:-3972201 None:intergenic
GGGCCGCCTGAAGGAAAATG+GGG 0.676507 1_1:+3968187 Msa0002110:CDS
TTCATGCTGATCCTCACCCG+GGG 0.678599 1_1:+3970653 Msa0002110:CDS
GGAGTAAAGGATCGATTCCG+CGG 0.682638 1_1:-3965265 None:intergenic
CAATTGGCAAGTCTTATGAG+AGG 0.695083 1_1:+3965600 Msa0002110:CDS
ACAGCAAGTATACATCAAGG+AGG 0.696808 1_1:+3969760 Msa0002110:CDS
GTGTGGTGCGAAGTGTGACA+AGG 0.700349 1_1:-3965061 None:intergenic
TCATCCCAACTCATCTACCG+CGG 0.706405 1_1:+3965248 Msa0002110:CDS
TAAAGCACTCCTTAGCCGAG+GGG 0.715422 1_1:-3972931 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATAATTATTATAA+TGG - chr1_1:3969677-3969696 None:intergenic 0.0%
!!! AATATTTATTCAATGAATTT+TGG - chr1_1:3966012-3966031 None:intergenic 10.0%
!! AAAAAAAATAGAAATATCAT+AGG - chr1_1:3966063-3966082 None:intergenic 10.0%
!! ATAAATATTTAGATATTAGT+CGG + chr1_1:3966826-3966845 Msa0002110:intron 10.0%
!! CAAACTAATAAATATAATTA+AGG + chr1_1:3969249-3969268 Msa0002110:intron 10.0%
!!! TGGTTTATTTTTAATTTTTT+TGG + chr1_1:3969367-3969386 Msa0002110:intron 10.0%
!!! AAATTTTTTTTTTTAGTGTA+GGG + chr1_1:3970535-3970554 Msa0002110:intron 10.0%
!!! GATTTTTTATTTATGAAAAT+AGG + chr1_1:3971328-3971347 Msa0002110:intron 10.0%
!!! ATCCATATTTTTTAATTTTA+CGG - chr1_1:3971505-3971524 None:intergenic 10.0%
!!! TTTTTAATTTCTTGCATATT+TGG + chr1_1:3966924-3966943 Msa0002110:intron 15.0%
!! ATAAGTTTCAATTATCTAAA+AGG - chr1_1:3967242-3967261 None:intergenic 15.0%
!! AAGAAAGTAATATATCAAAA+TGG - chr1_1:3968063-3968082 None:intergenic 15.0%
!!! TATTAGTTTGTTTCTAAAAT+AGG - chr1_1:3969239-3969258 None:intergenic 15.0%
!! ACTAATAAATATAATTAAGG+AGG + chr1_1:3969252-3969271 Msa0002110:intron 15.0%
!!! AATAATAAATTACCTGTTTT+AGG - chr1_1:3969878-3969897 None:intergenic 15.0%
!!! AAAATAATTTTGACAAATTC+AGG + chr1_1:3970474-3970493 Msa0002110:intron 15.0%
!!! AAATAATTTTGACAAATTCA+GGG + chr1_1:3970475-3970494 Msa0002110:intron 15.0%
!!! GAAATTTTTTTTTTTAGTGT+AGG + chr1_1:3970534-3970553 Msa0002110:intron 15.0%
!! GTTTATAAAGAATTTACTTA+AGG - chr1_1:3970579-3970598 None:intergenic 15.0%
!! TACCGTAAAATTAAAAAATA+TGG + chr1_1:3971500-3971519 Msa0002110:intron 15.0%
!! TATACATTGTAAAACAAAAT+TGG + chr1_1:3971557-3971576 Msa0002110:intron 15.0%
!! AAAATGAAGTTAAAAGAAAA+CGG - chr1_1:3971660-3971679 None:intergenic 15.0%
!! GAAAAATTATAACTATGATA+TGG - chr1_1:3971705-3971724 None:intergenic 15.0%
!!! AAATGGTTACTATTAAATTT+TGG + chr1_1:3972668-3972687 Msa0002110:intron 15.0%
!! AGTATAATAACTAAATTACT+TGG - chr1_1:3973295-3973314 None:intergenic 15.0%
!! TAGTATAAAAATATGATTGT+AGG - chr1_1:3973434-3973453 None:intergenic 15.0%
!!! TTGGATTTTATGTTATTTGA+TGG + chr1_1:3966160-3966179 Msa0002110:intron 20.0%
!!! GATAAATTTGTTTTGATTTG+AGG + chr1_1:3966706-3966725 Msa0002110:intron 20.0%
!! CGATATAGATTCATTTAAAA+AGG - chr1_1:3967521-3967540 None:intergenic 20.0%
!!! AAGTTATTAACTTTTTTCTC+TGG - chr1_1:3967567-3967586 None:intergenic 20.0%
!! GTTAATAACTTGATATTAGT+TGG + chr1_1:3967576-3967595 Msa0002110:intron 20.0%
!!! TGCTTTTTACCTAATTTTTT+AGG + chr1_1:3968449-3968468 Msa0002110:intron 20.0%
!!! CATAAGAAATAAGAAAGTAT+TGG - chr1_1:3968607-3968626 None:intergenic 20.0%
!! AATATAAAAGCAAAGAAACA+AGG + chr1_1:3968994-3969013 Msa0002110:intron 20.0%
!!! AAGGTTAAGTTTTTCATAAT+AGG + chr1_1:3969013-3969032 Msa0002110:intron 20.0%
!! ATTATAAAAATTGTCATGAG+AGG + chr1_1:3969685-3969704 Msa0002110:intron 20.0%
!! ATTTCAATTTATACAGCTTA+GGG + chr1_1:3969971-3969990 Msa0002110:intron 20.0%
!!! TACATAAATTTTTGAAACAC+AGG - chr1_1:3970066-3970085 None:intergenic 20.0%
!! TGTGTTTCAAAAATTTATGT+AGG + chr1_1:3970065-3970084 Msa0002110:intron 20.0%
!! AATACTAATGATTATACAAC+AGG - chr1_1:3970105-3970124 None:intergenic 20.0%
!! AAATGTCTCTAAATAAGTAA+TGG - chr1_1:3970266-3970285 None:intergenic 20.0%
!!! AATTTCATAATGTCTTATTG+AGG - chr1_1:3970831-3970850 None:intergenic 20.0%
!!! TTCTGGTATTTAAAATCTAA+TGG - chr1_1:3971117-3971136 None:intergenic 20.0%
!! TCTTAAAGATTCTTTGTATA+TGG + chr1_1:3971214-3971233 Msa0002110:intron 20.0%
!!! AATTTCTTTTTTACTTGCAA+AGG - chr1_1:3971305-3971324 None:intergenic 20.0%
!!! TTAATTTTACGGTAAATATC+TGG - chr1_1:3971494-3971513 None:intergenic 20.0%
!! TAAAAGAACTTAAACATTAG+TGG - chr1_1:3971865-3971884 None:intergenic 20.0%
!! CATCATTTATCATAATGATT+AGG - chr1_1:3971897-3971916 None:intergenic 20.0%
!! CTAATCATTATGATAAATGA+TGG + chr1_1:3971895-3971914 Msa0002110:intron 20.0%
!! TTCATCAATTTCAAAAACAT+TGG - chr1_1:3972442-3972461 None:intergenic 20.0%
!!! TGATGTAGATATAACAATTT+TGG + chr1_1:3972629-3972648 Msa0002110:intron 20.0%
!!! TTTTATACTAATTACAACAG+AGG + chr1_1:3973444-3973463 Msa0002110:intron 20.0%
!!! AAAGTCGTATATAATTTTTG+TGG + chr1_1:3973636-3973655 Msa0002110:intron 20.0%
!! CTAAAATTGAATAAATCAGT+TGG + chr1_1:3973688-3973707 Msa0002110:intron 20.0%
!!! TGATTTATTTTAGCTTAACA+AGG + chr1_1:3974298-3974317 Msa0002110:intron 20.0%
!! TTATTTATCTATTTGTCTGT+GGG + chr1_1:3974331-3974350 Msa0002110:intron 20.0%
!! TATTTATATATACTGGTATG+TGG - chr1_1:3974566-3974585 None:intergenic 20.0%
!! CTATAATGATTAATGAACAA+GGG - chr1_1:3974604-3974623 None:intergenic 20.0%
! TTTATTTGCATTCAGAGAAT+TGG + chr1_1:3965525-3965544 Msa0002110:intron 25.0%
!!! TAAGTTTTGTGAGTTTGTTT+GGG - chr1_1:3965954-3965973 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGTTTGTT+TGG - chr1_1:3965955-3965974 None:intergenic 25.0%
!! TTCAATGAATTTTGGATTGA+GGG - chr1_1:3966004-3966023 None:intergenic 25.0%
!! ATTCAATGAATTTTGGATTG+AGG - chr1_1:3966005-3966024 None:intergenic 25.0%
! GTATATTCAAGCATCATAAA+TGG - chr1_1:3966105-3966124 None:intergenic 25.0%
!!! TGTGTATTTTTCAATTGTGT+AGG + chr1_1:3966186-3966205 Msa0002110:intron 25.0%
! TCTTGTCGATAACTAATATT+AGG + chr1_1:3966481-3966500 Msa0002110:intron 25.0%
! AAACTAAAGATAGTTTCTGA+CGG - chr1_1:3966564-3966583 None:intergenic 25.0%
!! AGAAACTATCTTTAGTTTCT+AGG + chr1_1:3966566-3966585 Msa0002110:intron 25.0%
!! TTCTTTTGTCTATGACTTAA+AGG - chr1_1:3966670-3966689 None:intergenic 25.0%
! TATCTAAAAGGATTGATACA+GGG - chr1_1:3967230-3967249 None:intergenic 25.0%
! TTATCTAAAAGGATTGATAC+AGG - chr1_1:3967231-3967250 None:intergenic 25.0%
!! ATATTTTCATAACCAGAATG+AGG + chr1_1:3967298-3967317 Msa0002110:intron 25.0%
! TTCATTTAAAAAGGACACAA+TGG - chr1_1:3967512-3967531 None:intergenic 25.0%
! AATCTATATCGTCATACATA+GGG + chr1_1:3967530-3967549 Msa0002110:intron 25.0%
!!! GTTTCATTATTCTGAAATGA+AGG - chr1_1:3967658-3967677 None:intergenic 25.0%
! AATAATGAAACACAATTGTC+TGG + chr1_1:3967667-3967686 Msa0002110:intron 25.0%
! AGTAATATATCAAAATGGTC+TGG - chr1_1:3968058-3968077 None:intergenic 25.0%
!! TTTTGAATTAACTAACCAAC+AGG + chr1_1:3968114-3968133 Msa0002110:intron 25.0%
!!! CCATTGATTTATTCATTATC+CGG + chr1_1:3968258-3968277 Msa0002110:CDS 25.0%
! AAATTAGGTAAAAAGCAGTT+GGG - chr1_1:3968446-3968465 None:intergenic 25.0%
! AAAATTAGGTAAAAAGCAGT+TGG - chr1_1:3968447-3968466 None:intergenic 25.0%
! AACGATAAAATACTCTATCA+AGG + chr1_1:3968736-3968755 Msa0002110:intron 25.0%
! TATAACTTCGAAATACATAG+AGG - chr1_1:3968804-3968823 None:intergenic 25.0%
! GTTATCCTTTGTATATATAG+AGG + chr1_1:3969142-3969161 Msa0002110:intron 25.0%
! TGTAACCTCTATATATACAA+AGG - chr1_1:3969150-3969169 None:intergenic 25.0%
!! TTTGTTGTAATTACTTGTAC+AGG - chr1_1:3969174-3969193 None:intergenic 25.0%
! TATATAGAGAGAAATAGAGT+GGG - chr1_1:3969552-3969571 None:intergenic 25.0%
! ATATATAGAGAGAAATAGAG+TGG - chr1_1:3969553-3969572 None:intergenic 25.0%
! ATATGTATTGTGTAGAGAAA+CGG - chr1_1:3969606-3969625 None:intergenic 25.0%
! AGATGATTAACATTAAACCA+TGG - chr1_1:3969642-3969661 None:intergenic 25.0%
!!! ATTATTTTAATGCTTTCAGC+TGG + chr1_1:3969892-3969911 Msa0002110:intron 25.0%
! CATTTCAATTTATACAGCTT+AGG + chr1_1:3969970-3969989 Msa0002110:intron 25.0%
! AAAAGTTAACAATCCATTGT+CGG - chr1_1:3970157-3970176 None:intergenic 25.0%
!! CAAGAAATATTATCTAGTTC+AGG - chr1_1:3970920-3970939 None:intergenic 25.0%
! CTGAACTAGATAATATTTCT+TGG + chr1_1:3970918-3970937 Msa0002110:intron 25.0%
! GAATGTTATAATGTTTGAAC+TGG + chr1_1:3971145-3971164 Msa0002110:intron 25.0%
! TTCTTATTCTTCATAAAGCA+TGG + chr1_1:3971249-3971268 Msa0002110:intron 25.0%
! TCTTATTCTTCATAAAGCAT+GGG + chr1_1:3971250-3971269 Msa0002110:intron 25.0%
!! AAAACAAAATTGGTTTCAGT+AGG + chr1_1:3971567-3971586 Msa0002110:intron 25.0%
!! TTTTAAATGAACCACAAATC+AGG - chr1_1:3971609-3971628 None:intergenic 25.0%
!!! AATTTTTCTTTGCTTTTGCA+TGG + chr1_1:3971717-3971736 Msa0002110:intron 25.0%
! ACACTTGTCTTAATGTTTAA+AGG - chr1_1:3971756-3971775 None:intergenic 25.0%
!!! TGTTTTGTTATTTGCAATTG+TGG + chr1_1:3971775-3971794 Msa0002110:intron 25.0%
! TATCATAATGATTAGGATAG+TGG - chr1_1:3971890-3971909 None:intergenic 25.0%
!! TTACCTTTGATTATCCTTTT+AGG + chr1_1:3972175-3972194 Msa0002110:CDS 25.0%
! TATCCTAAAAGGATAATCAA+AGG - chr1_1:3972181-3972200 None:intergenic 25.0%
! TAATTATAAGGGCAAAGTAT+GGG - chr1_1:3972206-3972225 None:intergenic 25.0%
! ATACTTTGCCCTTATAATTA+GGG + chr1_1:3972206-3972225 Msa0002110:CDS 25.0%
! AATTATACCTGTGCAATATA+TGG - chr1_1:3972300-3972319 None:intergenic 25.0%
!! TTGATGTAAGTTTTACTTGA+AGG + chr1_1:3972404-3972423 Msa0002110:intron 25.0%
! TACAGAAAAAATTAAGCCAA+TGG + chr1_1:3972525-3972544 Msa0002110:intron 25.0%
! ACAGAAAAAATTAAGCCAAT+GGG + chr1_1:3972526-3972545 Msa0002110:intron 25.0%
!! TAGATATAACAATTTTGGAC+AGG + chr1_1:3972634-3972653 Msa0002110:intron 25.0%
!!! TAGTCTTAGACTTAGTTTTA+TGG + chr1_1:3972698-3972717 Msa0002110:intron 25.0%
!! AATTTTCCGATGAAGAATTT+TGG - chr1_1:3972730-3972749 None:intergenic 25.0%
! TTCACAACTAATATTCATGA+CGG + chr1_1:3972750-3972769 Msa0002110:intron 25.0%
! CTTTACGTTACACTATATAT+GGG + chr1_1:3972949-3972968 Msa0002110:CDS 25.0%
!!! TTTTTTCCGAGAATTTCTTT+TGG + chr1_1:3973208-3973227 Msa0002110:CDS 25.0%
! CAATAAAGTAAAAGAAGTCA+AGG - chr1_1:3973351-3973370 None:intergenic 25.0%
!! ATTGTCGAAGTTTTCAAATT+TGG + chr1_1:3973408-3973427 Msa0002110:intron 25.0%
!! GTTGGTAAAATTAACTGAAA+AGG + chr1_1:3973706-3973725 Msa0002110:intron 25.0%
!! TAACTGAAAAGGTTTGTTTA+TGG + chr1_1:3973717-3973736 Msa0002110:intron 25.0%
! CTTATTTATCTATTTGTCTG+TGG + chr1_1:3974330-3974349 Msa0002110:intron 25.0%
! TGTCAAATATACACAATTGT+GGG - chr1_1:3974531-3974550 None:intergenic 25.0%
! ATTGTGTATATTTGACAGAA+TGG + chr1_1:3974534-3974553 Msa0002110:three_prime_UTR 25.0%
! GCTATAATGATTAATGAACA+AGG - chr1_1:3974605-3974624 None:intergenic 25.0%
AATGGAAGAAGATGAACAAT+TGG + chr1_1:3965584-3965603 Msa0002110:CDS 30.0%
!! ATACATAATAAGCATTGAGC+TGG + chr1_1:3966121-3966140 Msa0002110:intron 30.0%
AAGTAGTGAATTTCTACCAT+TGG + chr1_1:3966216-3966235 Msa0002110:CDS 30.0%
AGCTAGTATTACTGCATATT+GGG + chr1_1:3966249-3966268 Msa0002110:CDS 30.0%
!! ATATTAGGCGTGTTGATTTA+AGG + chr1_1:3966496-3966515 Msa0002110:intron 30.0%
AACTAAAGATAGTTTCTGAC+GGG - chr1_1:3966563-3966582 None:intergenic 30.0%
! ATTTGAGGTGAATGATAGAT+CGG + chr1_1:3966721-3966740 Msa0002110:intron 30.0%
ATATCACAAATAAGCAACCA+CGG - chr1_1:3967282-3967301 None:intergenic 30.0%
ACACAATGGCATATATAGAA+GGG - chr1_1:3967498-3967517 None:intergenic 30.0%
GAATCTATATCGTCATACAT+AGG + chr1_1:3967529-3967548 Msa0002110:intron 30.0%
!!! TTCTGAGGTTTTTTTGTTCT+TGG + chr1_1:3967885-3967904 Msa0002110:intron 30.0%
CCGGATAATGAATAAATCAA+TGG - chr1_1:3968261-3968280 None:intergenic 30.0%
CAATGGAGACCTAAAAAATT+AGG - chr1_1:3968461-3968480 None:intergenic 30.0%
TATGTGAATGAAGGTGAAAA+TGG + chr1_1:3968535-3968554 Msa0002110:intron 30.0%
TTTACACTAAGCAGAAATCT+TGG + chr1_1:3968666-3968685 Msa0002110:intron 30.0%
TCTTTATCTTCCTAGGTATT+CGG - chr1_1:3968717-3968736 None:intergenic 30.0%
TTATCGTTCTTTATCTTCCT+AGG - chr1_1:3968724-3968743 None:intergenic 30.0%
TCTTCACACAACACATTAAT+CGG + chr1_1:3968775-3968794 Msa0002110:intron 30.0%
CAGTTAATTAGTTAGGACTT+AGG - chr1_1:3968831-3968850 None:intergenic 30.0%
GTTAGAGCAGTTAATTAGTT+AGG - chr1_1:3968838-3968857 None:intergenic 30.0%
! GATCATATTGCCTTTTATGA+GGG + chr1_1:3969035-3969054 Msa0002110:intron 30.0%
ATGATGAGACTAAGAACATT+AGG + chr1_1:3969298-3969317 Msa0002110:intron 30.0%
!! AATTTGTTGCAACTGATTGA+TGG + chr1_1:3969347-3969366 Msa0002110:intron 30.0%
CTAGTGAATGATTGTATGTA+TGG + chr1_1:3969413-3969432 Msa0002110:intron 30.0%
TTAAACCATGGTAGTCAAAT+CGG - chr1_1:3969630-3969649 None:intergenic 30.0%
TCTTATCACAGTTCAATTTC+AGG + chr1_1:3969719-3969738 Msa0002110:intron 30.0%
!!! AAAAGTGTTTTTACCGACAA+TGG + chr1_1:3970141-3970160 Msa0002110:intron 30.0%
!!! GACAATGGATTGTTAACTTT+TGG + chr1_1:3970156-3970175 Msa0002110:intron 30.0%
ATTAAAGATGTCAAGGATAG+TGG - chr1_1:3970203-3970222 None:intergenic 30.0%
GTGAAACATTAAAGATGTCA+AGG - chr1_1:3970210-3970229 None:intergenic 30.0%
TGATATTGTTTAGACTGGAA+AGG + chr1_1:3970352-3970371 Msa0002110:intron 30.0%
!!! TACAATTGTTTTGGGTTCAA+TGG + chr1_1:3970504-3970523 Msa0002110:intron 30.0%
!!! ACAATTGTTTTGGGTTCAAT+GGG + chr1_1:3970505-3970524 Msa0002110:intron 30.0%
AAACTTGCAATACTTGACTT+TGG + chr1_1:3970700-3970719 Msa0002110:CDS 30.0%
ATAACATTCATTGCAAGTTC+TGG - chr1_1:3971134-3971153 None:intergenic 30.0%
TTTGTATATGGTATAAGCGT+AGG + chr1_1:3971226-3971245 Msa0002110:intron 30.0%
! AAATTGGTTTCAGTAGGAAA+TGG + chr1_1:3971573-3971592 Msa0002110:intron 30.0%
! GTGAAATTTAACCTGATTTG+TGG + chr1_1:3971595-3971614 Msa0002110:intron 30.0%
!!! AACTTCATTTTTTCTCCTTC+AGG + chr1_1:3971669-3971688 Msa0002110:intron 30.0%
TTTAACGAAGTCTTTCACTA+TGG - chr1_1:3972022-3972041 None:intergenic 30.0%
AATTATAAGGGCAAAGTATG+GGG - chr1_1:3972205-3972224 None:intergenic 30.0%
CTAATTATAAGGGCAAAGTA+TGG - chr1_1:3972207-3972226 None:intergenic 30.0%
CATACTTTGCCCTTATAATT+AGG + chr1_1:3972205-3972224 Msa0002110:CDS 30.0%
!!! AGACAGAAATTTTTTCCCAT+TGG - chr1_1:3972544-3972563 None:intergenic 30.0%
AAAAATTTCTGTCTAGTGTC+TGG + chr1_1:3972550-3972569 Msa0002110:intron 30.0%
TCTAGTGTCTGGAAATAAAA+GGG + chr1_1:3972561-3972580 Msa0002110:intron 30.0%
AGTACACCAAAATTCTTCAT+CGG + chr1_1:3972721-3972740 Msa0002110:intron 30.0%
!!! ATATTCATGACGGATTTTGA+TGG + chr1_1:3972760-3972779 Msa0002110:intron 30.0%
GCTTTACGTTACACTATATA+TGG + chr1_1:3972948-3972967 Msa0002110:CDS 30.0%
TACACTATATATGGGAAATC+TGG + chr1_1:3972957-3972976 Msa0002110:CDS 30.0%
AGCTGTAATAAAATTCTCGA+AGG - chr1_1:3973021-3973040 None:intergenic 30.0%
GGAGTTATTGTACTTTCATA+TGG - chr1_1:3973322-3973341 None:intergenic 30.0%
AGTTAAATCTGAACAAGGTA+TGG + chr1_1:3973545-3973564 Msa0002110:intron 30.0%
! TTTTGTGGTAAAATTCCACA+TGG + chr1_1:3973651-3973670 Msa0002110:intron 30.0%
ATGACTCCAAAAACAGTTTA+TGG - chr1_1:3973803-3973822 None:intergenic 30.0%
GTAAGAATTATGTCCTTACT+AGG + chr1_1:3974026-3974045 Msa0002110:CDS 30.0%
AACTTTATCCTCTTCAGTTA+TGG - chr1_1:3974126-3974145 None:intergenic 30.0%
TTCTTAGCAGATTATCTTCT+CGG + chr1_1:3974439-3974458 Msa0002110:CDS 30.0%
CTGTCAAATATACACAATTG+TGG - chr1_1:3974532-3974551 None:intergenic 30.0%
GATTAATGAACAAGGGTAAA+TGG - chr1_1:3974597-3974616 None:intergenic 30.0%
ATAAGCCAAATCAATTATGC+TGG + chr1_1:3974666-3974685 Msa0002110:three_prime_UTR 30.0%
AATAGCCAGCATAATTGATT+TGG - chr1_1:3974674-3974693 None:intergenic 30.0%
CACGTTGAAATCAGTGAATT+CGG - chr1_1:3965501-3965520 None:intergenic 35.0%
!!! TGGTGAGCTACTTTTTTTCT+TGG + chr1_1:3966141-3966160 Msa0002110:intron 35.0%
CAATATGCAGTAATACTAGC+TGG - chr1_1:3966250-3966269 None:intergenic 35.0%
CAGCTAGTATTACTGCATAT+TGG + chr1_1:3966248-3966267 Msa0002110:CDS 35.0%
GCTAGTATTACTGCATATTG+GGG + chr1_1:3966250-3966269 Msa0002110:CDS 35.0%
GGTTAACAAGAAGGTTAAAG+AGG + chr1_1:3966357-3966376 Msa0002110:CDS 35.0%
AGAGAAGAAACAGAAAGCAA+GGG - chr1_1:3966464-3966483 None:intergenic 35.0%
AAGAGAAGAAACAGAAAGCA+AGG - chr1_1:3966465-3966484 None:intergenic 35.0%
! TTTGAGGTGAATGATAGATC+GGG + chr1_1:3966722-3966741 Msa0002110:intron 35.0%
TAGAAGTTTCCAGTTACGTA+TGG + chr1_1:3966773-3966792 Msa0002110:intron 35.0%
TGTTATCATGTGTGTTGCAT+GGG - chr1_1:3966856-3966875 None:intergenic 35.0%
ATGTTATCATGTGTGTTGCA+TGG - chr1_1:3966857-3966876 None:intergenic 35.0%
TTTGCACAACAACATTGTGT+TGG + chr1_1:3967031-3967050 Msa0002110:intron 35.0%
GTTTACAAAACCAGCTTGTA+AGG - chr1_1:3967186-3967205 None:intergenic 35.0%
TTGTGCTATATATTTCACCG+TGG + chr1_1:3967262-3967281 Msa0002110:intron 35.0%
ACGTGAAATTGTGACATCTT+TGG + chr1_1:3967340-3967359 Msa0002110:CDS 35.0%
CGTGAAATTGTGACATCTTT+GGG + chr1_1:3967341-3967360 Msa0002110:CDS 35.0%
GTCCAGCATACATAAAACTT+GGG + chr1_1:3967363-3967382 Msa0002110:CDS 35.0%
GACACAATGGCATATATAGA+AGG - chr1_1:3967499-3967518 None:intergenic 35.0%
GACAGCAATTCTTGTAAGAA+GGG - chr1_1:3967786-3967805 None:intergenic 35.0%
AGACAGCAATTCTTGTAAGA+AGG - chr1_1:3967787-3967806 None:intergenic 35.0%
! AGAATTGCTGTCTGATGTTT+TGG + chr1_1:3967794-3967813 Msa0002110:intron 35.0%
!!! TGAGGTTTTTTTGTTCTTGG+TGG + chr1_1:3967888-3967907 Msa0002110:intron 35.0%
!!! GAGGTTTTTTTGTTCTTGGT+GGG + chr1_1:3967889-3967908 Msa0002110:intron 35.0%
!!! AGGTTTTTTTGTTCTTGGTG+GGG + chr1_1:3967890-3967909 Msa0002110:intron 35.0%
! GAAGGAACCTTCACATTTTA+TGG - chr1_1:3967929-3967948 None:intergenic 35.0%
! TCAGAATAGACATTTTGCCA+TGG - chr1_1:3968001-3968020 None:intergenic 35.0%
ACAAGAAAACAGATACCTGT+TGG - chr1_1:3968132-3968151 None:intergenic 35.0%
TTATTCATTATCCGGAACCT+TGG + chr1_1:3968266-3968285 Msa0002110:CDS 35.0%
!! ACAAGAATTTAACTTGCCTG+AGG - chr1_1:3968311-3968330 None:intergenic 35.0%
GAGTTAGACTATGTGAATGA+AGG + chr1_1:3968526-3968545 Msa0002110:intron 35.0%
CAGGTCTTTCTTCATCATTT+CGG - chr1_1:3968572-3968591 None:intergenic 35.0%
TACTGACGTAAAACAGATAG+TGG - chr1_1:3968646-3968665 None:intergenic 35.0%
CTTTATCTTCCTAGGTATTC+GGG - chr1_1:3968716-3968735 None:intergenic 35.0%
AACTGCTCTAACAGTTTACA+TGG + chr1_1:3968846-3968865 Msa0002110:intron 35.0%
!! GATCGTCCATTTGATTTGTT+GGG + chr1_1:3968902-3968921 Msa0002110:intron 35.0%
GGAAAGAAAGTAACATCAGT+TGG - chr1_1:3968928-3968947 None:intergenic 35.0%
! GGATCATATTGCCTTTTATG+AGG + chr1_1:3969034-3969053 Msa0002110:intron 35.0%
AGATATGAAGCCCTCATAAA+AGG - chr1_1:3969048-3969067 None:intergenic 35.0%
CCTTGACACATATCATCAAT+AGG - chr1_1:3969100-3969119 None:intergenic 35.0%
! CCTATTGATGATATGTGTCA+AGG + chr1_1:3969097-3969116 Msa0002110:intron 35.0%
! TTGATGATATGTGTCAAGGT+TGG + chr1_1:3969101-3969120 Msa0002110:intron 35.0%
GTCTCATCATATTGTGAATC+AGG - chr1_1:3969288-3969307 None:intergenic 35.0%
TAGGCTAGACTTTCATTCAA+TGG + chr1_1:3969317-3969336 Msa0002110:intron 35.0%
! ATTTGTAAAGAAAAGCGTGG+TGG - chr1_1:3969528-3969547 None:intergenic 35.0%
GGAATTTGTAAAGAAAAGCG+TGG - chr1_1:3969531-3969550 None:intergenic 35.0%
TAAACCATGGTAGTCAAATC+GGG - chr1_1:3969629-3969648 None:intergenic 35.0%
!! GTATACTTGCTGTAAGTTCT+TGG - chr1_1:3969753-3969772 None:intergenic 35.0%
CTTACAGCAAGTATACATCA+AGG + chr1_1:3969757-3969776 Msa0002110:CDS 35.0%
!! CTTACAACAGAATGGATTGA+CGG + chr1_1:3969786-3969805 Msa0002110:CDS 35.0%
GTCGGAGAATTAGTTAATGT+TGG + chr1_1:3969840-3969859 Msa0002110:CDS 35.0%
TCTTTAATGTTTCACTTCCC+TGG + chr1_1:3970215-3970234 Msa0002110:intron 35.0%
CTCTAAATAAGTAATGGCAG+AGG - chr1_1:3970260-3970279 None:intergenic 35.0%
!! GAGATAATTGATAGCGTATG+TGG + chr1_1:3970328-3970347 Msa0002110:intron 35.0%
GTGGATGATATTGTTTAGAC+TGG + chr1_1:3970347-3970366 Msa0002110:intron 35.0%
TTGTTTAGACTGGAAAGGAT+TGG + chr1_1:3970357-3970376 Msa0002110:intron 35.0%
TATTTGGGTCCTCTAAATTC+AGG + chr1_1:3970421-3970440 Msa0002110:intron 35.0%
ATTTGGGTCCTCTAAATTCA+GGG + chr1_1:3970422-3970441 Msa0002110:intron 35.0%
! GGCTCGATTACAATTGTTTT+GGG + chr1_1:3970496-3970515 Msa0002110:intron 35.0%
TTATTTCAGCTGCTTGATAC+TGG + chr1_1:3970625-3970644 Msa0002110:intron 35.0%
! AGTATTGCAAGTTTTCCATC+AGG - chr1_1:3970694-3970713 None:intergenic 35.0%
TTGCAATACTTGACTTTGGT+AGG + chr1_1:3970704-3970723 Msa0002110:intron 35.0%
TTGATTCAAATGTGTGCATG+AGG + chr1_1:3970766-3970785 Msa0002110:intron 35.0%
TGATTCAAATGTGTGCATGA+GGG + chr1_1:3970767-3970786 Msa0002110:intron 35.0%
!! AAGACTTCGTGTGTTTTGTT+TGG + chr1_1:3970886-3970905 Msa0002110:intron 35.0%
TGTGGCTAGATATTGTTCAT+CGG + chr1_1:3971793-3971812 Msa0002110:intron 35.0%
! ATGAAGTTGATCAAGACAAC+AGG - chr1_1:3971826-3971845 None:intergenic 35.0%
!!! TCAACTTCATTGCTTTTTCC+TGG + chr1_1:3971836-3971855 Msa0002110:intron 35.0%
!! GAAATCTTTTGTTGTACCCA+GGG + chr1_1:3971917-3971936 Msa0002110:intron 35.0%
! TCAATTTTGTAACAAGCCCT+GGG - chr1_1:3971936-3971955 None:intergenic 35.0%
! CATTCCATACTTTTGATCGT+CGG - chr1_1:3971959-3971978 None:intergenic 35.0%
GTGAAAGACTTCGTTAAACT+TGG + chr1_1:3972024-3972043 Msa0002110:CDS 35.0%
! GATCTAAATTGACTCCATCT+GGG - chr1_1:3972056-3972075 None:intergenic 35.0%
GGCAAAAAACATCAACTTTC+AGG + chr1_1:3972128-3972147 Msa0002110:CDS 35.0%
ATTATAAGGGCAAAGTATGG+GGG - chr1_1:3972204-3972223 None:intergenic 35.0%
TCATCAACAATGGCAAAATC+AGG - chr1_1:3972270-3972289 None:intergenic 35.0%
TACCTGTGCAATATATGGAT+AGG - chr1_1:3972295-3972314 None:intergenic 35.0%
ATTGCACAGGTATAATTGTC+TGG + chr1_1:3972303-3972322 Msa0002110:intron 35.0%
!! ACTGGCTTATAGCTTTAACT+TGG + chr1_1:3972368-3972387 Msa0002110:intron 35.0%
GTCTAGTGTCTGGAAATAAA+AGG + chr1_1:3972560-3972579 Msa0002110:intron 35.0%
CTAGTGTCTGGAAATAAAAG+GGG + chr1_1:3972562-3972581 Msa0002110:intron 35.0%
TAGTGTCTGGAAATAAAAGG+GGG + chr1_1:3972563-3972582 Msa0002110:intron 35.0%
TTACTGATAGAGACTCTTGA+CGG + chr1_1:3972902-3972921 Msa0002110:intron 35.0%
TTTATTACAGCTGCCAAAAG+TGG + chr1_1:3973029-3973048 Msa0002110:CDS 35.0%
ATCAGACAGCAAAAATGCTA+GGG - chr1_1:3973180-3973199 None:intergenic 35.0%
TATCAGACAGCAAAAATGCT+AGG - chr1_1:3973181-3973200 None:intergenic 35.0%
!! AGCATTTTTGCTGTCTGATA+AGG + chr1_1:3973181-3973200 Msa0002110:CDS 35.0%
!! GCATTTTTGCTGTCTGATAA+GGG + chr1_1:3973182-3973201 Msa0002110:CDS 35.0%
!! CATTTTTGCTGTCTGATAAG+GGG + chr1_1:3973183-3973202 Msa0002110:CDS 35.0%
AGCGTAGTTAAATCTGAACA+AGG + chr1_1:3973540-3973559 Msa0002110:intron 35.0%
! CAAGGTACAATGTTACTTCT+GGG + chr1_1:3973607-3973626 Msa0002110:intron 35.0%
AAACAAAACTTAAGCGCCAT+AGG - chr1_1:3973757-3973776 None:intergenic 35.0%
! TAGCCACCATAAACTGTTTT+TGG + chr1_1:3973794-3973813 Msa0002110:intron 35.0%
ACTCCAAAAACAGTTTATGG+TGG - chr1_1:3973800-3973819 None:intergenic 35.0%
TAGGTACCATACCGAAAATA+GGG - chr1_1:3974067-3974086 None:intergenic 35.0%
TTATCCTCTTCAGTTATGGT+GGG - chr1_1:3974122-3974141 None:intergenic 35.0%
TTTATCCTCTTCAGTTATGG+TGG - chr1_1:3974123-3974142 None:intergenic 35.0%
TTTATCTATTTGTCTGTGGG+TGG + chr1_1:3974334-3974353 Msa0002110:intron 35.0%
AGAAGTTCTTGGATAATCTG+AGG - chr1_1:3974378-3974397 None:intergenic 35.0%
GATAATCTGCTAAGAACATC+AGG - chr1_1:3974435-3974454 None:intergenic 35.0%
TCTTAGCAGATTATCTTCTC+GGG + chr1_1:3974440-3974459 Msa0002110:CDS 35.0%
CAAATATACACAATTGTGGG+TGG - chr1_1:3974528-3974547 None:intergenic 35.0%
TGTGGAAGTTGTTGTATGTG+TGG - chr1_1:3965081-3965100 None:intergenic 40.0%
GTGGTTGTTGTAAAGAAGTG+TGG - chr1_1:3965099-3965118 None:intergenic 40.0%
GAGTAAACAGCATTCCACAA+TGG + chr1_1:3965217-3965236 Msa0002110:exon 40.0%
!! GAGAATTGGTGATGTTTCGA+AGG + chr1_1:3965539-3965558 Msa0002110:intron 40.0%
! CAATTGGCAAGTCTTATGAG+AGG + chr1_1:3965600-3965619 Msa0002110:CDS 40.0%
TAATGATTCGCTCTTTGCTG+AGG + chr1_1:3965641-3965660 Msa0002110:CDS 40.0%
! ATTTTGGATTGAGGGTCTGT+TGG - chr1_1:3965996-3966015 None:intergenic 40.0%
GTGCAGTTATTATCTGTTGC+TGG + chr1_1:3966304-3966323 Msa0002110:CDS 40.0%
CAGTTATTATCTGTTGCTGG+AGG + chr1_1:3966307-3966326 Msa0002110:CDS 40.0%
! TTGCTGGAGGTTTTCTTTCT+CGG + chr1_1:3966320-3966339 Msa0002110:CDS 40.0%
TAAGCTCATCCATACGTAAC+TGG - chr1_1:3966785-3966804 None:intergenic 40.0%
TGGAAATTCCACCCTAATTG+CGG + chr1_1:3967051-3967070 Msa0002110:intron 40.0%
TCTAGCACCTTCATTGTTCT+GGG + chr1_1:3967125-3967144 Msa0002110:intron 40.0%
ACTCAAACCCAGAACAATGA+AGG - chr1_1:3967135-3967154 None:intergenic 40.0%
! TTCATTGTTCTGGGTTTGAG+TGG + chr1_1:3967134-3967153 Msa0002110:intron 40.0%
! TCATTGTTCTGGGTTTGAGT+GGG + chr1_1:3967135-3967154 Msa0002110:intron 40.0%
TGAGTGGGGAATATAAAGCT+TGG + chr1_1:3967150-3967169 Msa0002110:intron 40.0%
GAGTGGGGAATATAAAGCTT+GGG + chr1_1:3967151-3967170 Msa0002110:intron 40.0%
TTCACGTATTTCAATAGCCC+TGG - chr1_1:3967327-3967346 None:intergenic 40.0%
GGTCCAGCATACATAAAACT+TGG + chr1_1:3967362-3967381 Msa0002110:CDS 40.0%
!! TGCCCAAGTTTTATGTATGC+TGG - chr1_1:3967368-3967387 None:intergenic 40.0%
AGCATGCAATGAAAGGGTAA+AGG - chr1_1:3967475-3967494 None:intergenic 40.0%
!!! GTCACTGCAGAGAGTTTTTT+TGG - chr1_1:3967722-3967741 None:intergenic 40.0%
!!! GTAAGCTCGTACTTTTTCTG+AGG + chr1_1:3967870-3967889 Msa0002110:intron 40.0%
!!! GGTTTTTTTGTTCTTGGTGG+GGG + chr1_1:3967891-3967910 Msa0002110:intron 40.0%
GGGGATTCCATAAAATGTGA+AGG + chr1_1:3967919-3967938 Msa0002110:intron 40.0%
TCCTTCATTTGCAGATGATG+TGG + chr1_1:3967943-3967962 Msa0002110:CDS 40.0%
ATTTGCAGATGATGTGGCTA+TGG + chr1_1:3967949-3967968 Msa0002110:CDS 40.0%
GCTCTAATTGAAGAGGAACT+TGG + chr1_1:3967971-3967990 Msa0002110:CDS 40.0%
AAAATGGTCTGGAAAGCTAC+CGG - chr1_1:3968047-3968066 None:intergenic 40.0%
GAAACATATGCAGCATCTCT+CGG + chr1_1:3968152-3968171 Msa0002110:intron 40.0%
ATCTCTCGGACAGGTATATA+AGG + chr1_1:3968166-3968185 Msa0002110:CDS 40.0%
TCTCTCGGACAGGTATATAA+GGG + chr1_1:3968167-3968186 Msa0002110:CDS 40.0%
GTAACTGTCTCGAGAACAAA+AGG - chr1_1:3968239-3968258 None:intergenic 40.0%
! ATTTTCGAAGAGCCAAACCA+AGG - chr1_1:3968286-3968305 None:intergenic 40.0%
!!! TTTTTAGGTCTCCATTGACG+TGG + chr1_1:3968464-3968483 Msa0002110:intron 40.0%
ACACTAAGCAGAAATCTTGG+TGG + chr1_1:3968669-3968688 Msa0002110:intron 40.0%
!! GGATCGTCCATTTGATTTGT+TGG + chr1_1:3968901-3968920 Msa0002110:intron 40.0%
AGTTGGCCCAACAAATCAAA+TGG - chr1_1:3968911-3968930 None:intergenic 40.0%
GCACATGCAAACAGATCATT+GGG - chr1_1:3969078-3969097 None:intergenic 40.0%
! ATATCCCGATTTGACTACCA+TGG + chr1_1:3969622-3969641 Msa0002110:intron 40.0%
ACAGCAAGTATACATCAAGG+AGG + chr1_1:3969760-3969779 Msa0002110:CDS 40.0%
CAGCAAGTATACATCAAGGA+GGG + chr1_1:3969761-3969780 Msa0002110:CDS 40.0%
CAGAGCAAAGAAAGCAATGT+CGG + chr1_1:3969822-3969841 Msa0002110:CDS 40.0%
AGTCATCTGCTACCTAAAAC+AGG + chr1_1:3969863-3969882 Msa0002110:CDS 40.0%
AGATGTAGCTTAAAGCTCAC+AGG - chr1_1:3969936-3969955 None:intergenic 40.0%
!! AGGATAGTGGAACATTAGTG+AGG - chr1_1:3970190-3970209 None:intergenic 40.0%
TTAGACTGGAAAGGATTGGA+AGG + chr1_1:3970361-3970380 Msa0002110:intron 40.0%
AATCCAGTCCCTGAATTTAG+AGG - chr1_1:3970433-3970452 None:intergenic 40.0%
! GGGCTCGATTACAATTGTTT+TGG + chr1_1:3970495-3970514 Msa0002110:intron 40.0%
! CGAAGTCTTTTTCTACTTCG+TGG - chr1_1:3970875-3970894 None:intergenic 40.0%
TATGGCTGTCATATTCCTGA+AGG - chr1_1:3971687-3971706 None:intergenic 40.0%
!! TTGCTTTTGCATGGCGATTT+TGG + chr1_1:3971726-3971745 Msa0002110:intron 40.0%
CTTAAACATTAGTGGCATCC+AGG - chr1_1:3971857-3971876 None:intergenic 40.0%
!! GGAAATCTTTTGTTGTACCC+AGG + chr1_1:3971916-3971935 Msa0002110:intron 40.0%
! GTCAATTTTGTAACAAGCCC+TGG - chr1_1:3971937-3971956 None:intergenic 40.0%
TTGACCGACGATCAAAAGTA+TGG + chr1_1:3971952-3971971 Msa0002110:CDS 40.0%
CAATTGCTCATCTCATCCAT+CGG + chr1_1:3971986-3972005 Msa0002110:CDS 40.0%
AATTGCTCATCTCATCCATC+GGG + chr1_1:3971987-3972006 Msa0002110:CDS 40.0%
AAACTTGGTTTCATCCCAGA+TGG + chr1_1:3972039-3972058 Msa0002110:CDS 40.0%
! GGATCTAAATTGACTCCATC+TGG - chr1_1:3972057-3972076 None:intergenic 40.0%
AAACATCAACTTTCAGGAGC+TGG + chr1_1:3972134-3972153 Msa0002110:CDS 40.0%
!! AAGTATGGGGGTATCCTAAA+AGG - chr1_1:3972192-3972211 None:intergenic 40.0%
GCCCTTATAATTAGGGCTAT+CGG + chr1_1:3972213-3972232 Msa0002110:CDS 40.0%
CCCGATAGCCCTAATTATAA+GGG - chr1_1:3972217-3972236 None:intergenic 40.0%
CCCTTATAATTAGGGCTATC+GGG + chr1_1:3972214-3972233 Msa0002110:CDS 40.0%
CCTTATAATTAGGGCTATCG+GGG + chr1_1:3972215-3972234 Msa0002110:CDS 40.0%
!! TTGGAAGGGATAGCTTTAGT+AGG + chr1_1:3972240-3972259 Msa0002110:CDS 40.0%
TGGATAGGCTTCATCAACAA+TGG - chr1_1:3972280-3972299 None:intergenic 40.0%
AGCCTATCCATATATTGCAC+AGG + chr1_1:3972290-3972309 Msa0002110:CDS 40.0%
CAGTTCTTGACAATGACAGA+GGG - chr1_1:3972352-3972371 None:intergenic 40.0%
CTTTCAAGCACTTCTTGTTC+AGG - chr1_1:3972465-3972484 None:intergenic 40.0%
GATGTAATTGGATGCCTTCA+AGG + chr1_1:3972591-3972610 Msa0002110:intron 40.0%
! ACAATTTTGGACAGGATGCA+CGG + chr1_1:3972642-3972661 Msa0002110:intron 40.0%
GCACAAGAAAATTTGCAGTG+TGG - chr1_1:3972831-3972850 None:intergenic 40.0%
AGCTTGGGCTTATTACTAAC+CGG + chr1_1:3973084-3973103 Msa0002110:CDS 40.0%
GTTGTTGAGATGTTACAGAC+TGG - chr1_1:3973133-3973152 None:intergenic 40.0%
CCTCGTCCAAAAGAAATTCT+CGG - chr1_1:3973217-3973236 None:intergenic 40.0%
TAAAAGAAGTCAAGGACGAG+AGG - chr1_1:3973343-3973362 None:intergenic 40.0%
GATCCAAGAAAAATTCGCCA+AGG + chr1_1:3973589-3973608 Msa0002110:intron 40.0%
! GTACCTTGGCGAATTTTTCT+TGG - chr1_1:3973595-3973614 None:intergenic 40.0%
CCAGAAGTAACATTGTACCT+TGG - chr1_1:3973609-3973628 None:intergenic 40.0%
! CCAAGGTACAATGTTACTTC+TGG + chr1_1:3973606-3973625 Msa0002110:intron 40.0%
TGTGGTAAAATTCCACATGG+TGG + chr1_1:3973654-3973673 Msa0002110:intron 40.0%
! TCTGCGCAAGTGTTGTTATA+TGG + chr1_1:3973929-3973948 Msa0002110:intron 40.0%
TGATTGACTGCAGATTGTCA+AGG + chr1_1:3973974-3973993 Msa0002110:intron 40.0%
GATTGACTGCAGATTGTCAA+GGG + chr1_1:3973975-3973994 Msa0002110:intron 40.0%
TGCATTCTGAACTCCTAGTA+AGG - chr1_1:3974042-3974061 None:intergenic 40.0%
! CAGAATGCAAGCCCTATTTT+CGG + chr1_1:3974053-3974072 Msa0002110:CDS 40.0%
GTAGGTACCATACCGAAAAT+AGG - chr1_1:3974068-3974087 None:intergenic 40.0%
TATACCCACCATAACTGAAG+AGG + chr1_1:3974115-3974134 Msa0002110:CDS 40.0%
!! TGTGGGTGGATTAAGCATTA+AGG - chr1_1:3974514-3974533 None:intergenic 40.0%
GAGAGAGAGAGAAGTTTGGA+GGG - chr1_1:3965123-3965142 None:intergenic 45.0%
AGAGAGAGAGAGAAGTTTGG+AGG - chr1_1:3965124-3965143 None:intergenic 45.0%
GAGAGAGAGAGAGAGAAGTT+TGG - chr1_1:3965127-3965146 None:intergenic 45.0%
GGATGATGCTGTATCCATTG+TGG - chr1_1:3965234-3965253 None:intergenic 45.0%
CCTTGAAGAAGAACCGTTGA+CGG - chr1_1:3965393-3965412 None:intergenic 45.0%
! TAAGAGAGTGAGAGCGCAAA+TGG + chr1_1:3965566-3965585 Msa0002110:CDS 45.0%
! AGTCTTATGAGAGGTCTTCG+TGG + chr1_1:3965609-3965628 Msa0002110:CDS 45.0%
! TGTTCAGCTACGTCTTGTTG+AGG + chr1_1:3965668-3965687 Msa0002110:CDS 45.0%
CTAGCTGGATCATACACCAA+TGG - chr1_1:3966235-3966254 None:intergenic 45.0%
! TGCTGGAGGTTTTCTTTCTC+GGG + chr1_1:3966321-3966340 Msa0002110:CDS 45.0%
!! TTTTCTTTCTCGGGTTGCGT+GGG + chr1_1:3966330-3966349 Msa0002110:CDS 45.0%
GTGGGATGTGGTTAACAAGA+AGG + chr1_1:3966348-3966367 Msa0002110:CDS 45.0%
GCAAGCTGCTTAGTCTATCT+TGG - chr1_1:3966396-3966415 None:intergenic 45.0%
CTAAGGGTAGACCGCAATTA+GGG - chr1_1:3967065-3967084 None:intergenic 45.0%
ACCCTTAGGCGCCTTAATAT+CGG + chr1_1:3967077-3967096 Msa0002110:intron 45.0%
!! CAACCCAAGTGCCGATATTA+AGG - chr1_1:3967091-3967110 None:intergenic 45.0%
!! CAGAACAATGAAGGTGCTAG+AGG - chr1_1:3967126-3967145 None:intergenic 45.0%
CTCTAGCACCTTCATTGTTC+TGG + chr1_1:3967124-3967143 Msa0002110:intron 45.0%
! CATTGTTCTGGGTTTGAGTG+GGG + chr1_1:3967136-3967155 Msa0002110:intron 45.0%
ATAACCAGAATGAGGTTGCC+AGG + chr1_1:3967306-3967325 Msa0002110:intron 45.0%
TAACCAGAATGAGGTTGCCA+GGG + chr1_1:3967307-3967326 Msa0002110:intron 45.0%
! GAAGGGAGCATGCAATGAAA+GGG - chr1_1:3967481-3967500 None:intergenic 45.0%
! AGAAGGGAGCATGCAATGAA+AGG - chr1_1:3967482-3967501 None:intergenic 45.0%
GCCACATCATCTGCAAATGA+AGG - chr1_1:3967947-3967966 None:intergenic 45.0%
!! GGCTATGGCTCTAATTGAAG+AGG + chr1_1:3967964-3967983 Msa0002110:CDS 45.0%
! AATCCCCATTTTCCTTCAGG+CGG - chr1_1:3968193-3968212 None:intergenic 45.0%
! CCAAATCCCCATTTTCCTTC+AGG - chr1_1:3968196-3968215 None:intergenic 45.0%
CCTGAAGGAAAATGGGGATT+TGG + chr1_1:3968193-3968212 Msa0002110:CDS 45.0%
CATTATCCGGAACCTTGGTT+TGG + chr1_1:3968271-3968290 Msa0002110:CDS 45.0%
GGCTCTTCGAAAATTTCCTC+AGG + chr1_1:3968292-3968311 Msa0002110:CDS 45.0%
TCTTCATCATTTCGGCGAAG+CGG - chr1_1:3968564-3968583 None:intergenic 45.0%
!! GAAAGTATTGGACTCACCTG+TGG - chr1_1:3968595-3968614 None:intergenic 45.0%
GCAGAAATCTTGGTGGAATC+TGG + chr1_1:3968676-3968695 Msa0002110:intron 45.0%
TTTGTTCCTCCCGAATACCT+AGG + chr1_1:3968704-3968723 Msa0002110:intron 45.0%
TATCTTCCTAGGTATTCGGG+AGG - chr1_1:3968713-3968732 None:intergenic 45.0%
CTATCAAGGACTCAAGAGCT+TGG + chr1_1:3968750-3968769 Msa0002110:intron 45.0%
TTTACATGGCCTGCTCTCAA+CGG + chr1_1:3968860-3968879 Msa0002110:intron 45.0%
ATGGACGATCCATGTAAGTC+AGG - chr1_1:3968892-3968911 None:intergenic 45.0%
TTAAAGTGTGCGTCACACAG+AGG - chr1_1:3968949-3968968 None:intergenic 45.0%
GGCACATGCAAACAGATCAT+TGG - chr1_1:3969079-3969098 None:intergenic 45.0%
TTGTGTAGAGAAACGGAGCA+TGG - chr1_1:3969599-3969618 None:intergenic 45.0%
GGAGGGTTCTTACAACAGAA+TGG + chr1_1:3969778-3969797 Msa0002110:CDS 45.0%
! TTTTCATGCTGATCCTCACC+CGG + chr1_1:3970651-3970670 Msa0002110:CDS 45.0%
AATATGATCCGCACTCCTGA+TGG + chr1_1:3970676-3970695 Msa0002110:CDS 45.0%
! CAAGTTTTCCATCAGGAGTG+CGG - chr1_1:3970687-3970706 None:intergenic 45.0%
ACGAAGTCTTTCACTATGGC+TGG - chr1_1:3972018-3972037 None:intergenic 45.0%
!! TTTGCAAGCACTGGCAAGAT+AGG - chr1_1:3972078-3972097 None:intergenic 45.0%
TATCTTGCCAGTGCTTGCAA+AGG + chr1_1:3972077-3972096 Msa0002110:CDS 45.0%
TCAAAGACCTTTGCAAGCAC+TGG - chr1_1:3972087-3972106 None:intergenic 45.0%
!! GTCTTTGACCAGGCTTTAGA+AGG + chr1_1:3972099-3972118 Msa0002110:CDS 45.0%
!! TTTGACCAGGCTTTAGAAGG+TGG + chr1_1:3972102-3972121 Msa0002110:CDS 45.0%
CCCCGATAGCCCTAATTATA+AGG - chr1_1:3972218-3972237 None:intergenic 45.0%
! AATTAGGGCTATCGGGGTTT+TGG + chr1_1:3972221-3972240 Msa0002110:CDS 45.0%
CCAGTTCTTGACAATGACAG+AGG - chr1_1:3972353-3972372 None:intergenic 45.0%
CCTCTGTCATTGTCAAGAAC+TGG + chr1_1:3972350-3972369 Msa0002110:intron 45.0%
AAGGGGGACATCGATGTAAT+TGG + chr1_1:3972579-3972598 Msa0002110:intron 45.0%
TGGATGCCTTCAAGGTTTAG+AGG + chr1_1:3972599-3972618 Msa0002110:intron 45.0%
ATGCCTTCAAGGTTTAGAGG+AGG + chr1_1:3972602-3972621 Msa0002110:intron 45.0%
TGCCTTCAAGGTTTAGAGGA+GGG + chr1_1:3972603-3972622 Msa0002110:intron 45.0%
ATCCCTCCTCTAAACCTTGA+AGG - chr1_1:3972608-3972627 None:intergenic 45.0%
! CAATTTTGGACAGGATGCAC+GGG + chr1_1:3972643-3972662 Msa0002110:intron 45.0%
ATTACAGCTGCCAAAAGTGG+AGG + chr1_1:3973032-3973051 Msa0002110:CDS 45.0%
AGAGGATCTGAAAGGGAGTA+TGG + chr1_1:3973058-3973077 Msa0002110:CDS 45.0%
GATGTTACAGACTGGAATCC+CGG - chr1_1:3973125-3973144 None:intergenic 45.0%
! CCGAGAATTTCTTTTGGACG+AGG + chr1_1:3973214-3973233 Msa0002110:CDS 45.0%
GCAAAAGTAATGCCACCATG+TGG - chr1_1:3973669-3973688 None:intergenic 45.0%
GTTTACTACGAACGAGCGTA+TGG + chr1_1:3973843-3973862 Msa0002110:intron 45.0%
TGCTGTGACAAGGGAACAAA+TGG + chr1_1:3974004-3974023 Msa0002110:CDS 45.0%
! TGCAAGCCCTATTTTCGGTA+TGG + chr1_1:3974058-3974077 Msa0002110:CDS 45.0%
TTCGGTATGGTACCTACCAT+TGG + chr1_1:3974071-3974090 Msa0002110:CDS 45.0%
!! TATGGTGGGTATAAGAGCTG+CGG - chr1_1:3974108-3974127 None:intergenic 45.0%
! GAACAATGTCCAGAAAGTGC+TGG + chr1_1:3974151-3974170 Msa0002110:CDS 45.0%
TCAAGAACTCCAGCACTTTC+TGG - chr1_1:3974163-3974182 None:intergenic 45.0%
TCTGTCAAGCACATCTAGTC+AGG + chr1_1:3974196-3974215 Msa0002110:CDS 45.0%
TGAGGAACATTGAGAGCCTA+AGG - chr1_1:3974360-3974379 None:intergenic 45.0%
!! TATATGTTAATTTATTAATA+TGG + chr1_1:3968350-3968369 Msa0002110:intron 5.0%
!! ACAAATTATTTAAAAATTTA+GGG - chr1_1:3970402-3970421 None:intergenic 5.0%
!! TACAAATTATTTAAAAATTT+AGG - chr1_1:3970403-3970422 None:intergenic 5.0%
!!! ATTTTTAAATAATTTGTATT+TGG + chr1_1:3970405-3970424 Msa0002110:intron 5.0%
!!! TTTTTAAATAATTTGTATTT+GGG + chr1_1:3970406-3970425 Msa0002110:intron 5.0%
!! AATAAAAAAAAATTAATTCA+AGG - chr1_1:3970605-3970624 None:intergenic 5.0%
!! AAAAAAAAAAATAAGATATA+CGG - chr1_1:3971024-3971043 None:intergenic 5.0%
!!! AAAATTATTTTAAATTTTCT+TGG + chr1_1:3971462-3971481 Msa0002110:intron 5.0%
!! TATATTATATTTATATATAC+TGG - chr1_1:3974573-3974592 None:intergenic 5.0%
AGAGAGAAGTTTGGAGGGAG+TGG - chr1_1:3965118-3965137 None:intergenic 50.0%
TCATCCCAACTCATCTACCG+CGG + chr1_1:3965248-3965267 Msa0002110:CDS 50.0%
GATTCCGCGGTAGATGAGTT+GGG - chr1_1:3965255-3965274 None:intergenic 50.0%
! GGAGTAAAGGATCGATTCCG+CGG - chr1_1:3965268-3965287 None:intergenic 50.0%
! GACAGGAGCAGGTTTAGGAT+CGG - chr1_1:3965366-3965385 None:intergenic 50.0%
GTAGTGACAGGAGCAGGTTT+AGG - chr1_1:3965371-3965390 None:intergenic 50.0%
CCGTCAACGGTTCTTCTTCA+AGG + chr1_1:3965390-3965409 Msa0002110:CDS 50.0%
AGAGACACCGTTGACAGGTT+TGG - chr1_1:3965426-3965445 None:intergenic 50.0%
AAACCTGTCAACGGTGTCTC+TGG + chr1_1:3965425-3965444 Msa0002110:CDS 50.0%
AACCTGTCAACGGTGTCTCT+GGG + chr1_1:3965426-3965445 Msa0002110:CDS 50.0%
CTGCACAATGCGAGTTGCAA+CGG - chr1_1:3966290-3966309 None:intergenic 50.0%
!! GTTTTCTTTCTCGGGTTGCG+TGG + chr1_1:3966329-3966348 Msa0002110:CDS 50.0%
CTTGACGTGGTGGTCATTGT+CGG + chr1_1:3966423-3966442 Msa0002110:intron 50.0%
! ATAGATCGGGTTGCGTACAC+AGG + chr1_1:3966735-3966754 Msa0002110:intron 50.0%
CCTAAGGGTAGACCGCAATT+AGG - chr1_1:3967066-3967085 None:intergenic 50.0%
CCTAATTGCGGTCTACCCTT+AGG + chr1_1:3967063-3967082 Msa0002110:intron 50.0%
! GCCGATATTAAGGCGCCTAA+GGG - chr1_1:3967081-3967100 None:intergenic 50.0%
! TGCCGATATTAAGGCGCCTA+AGG - chr1_1:3967082-3967101 None:intergenic 50.0%
GCGCCTTAATATCGGCACTT+GGG + chr1_1:3967085-3967104 Msa0002110:intron 50.0%
GGTGCTAGAGGATGCAATGA+AGG - chr1_1:3967114-3967133 None:intergenic 50.0%
GCAGTTCTCACCTTACAAGC+TGG + chr1_1:3967173-3967192 Msa0002110:intron 50.0%
GCTGCAGGTGACAGTATATC+AGG - chr1_1:3967407-3967426 None:intergenic 50.0%
TGCAACTCTGTCATTGCTGC+AGG - chr1_1:3967422-3967441 None:intergenic 50.0%
! TTTTGTTCTTGGTGGGGGTG+TGG + chr1_1:3967896-3967915 Msa0002110:intron 50.0%
! TTTGTTCTTGGTGGGGGTGT+GGG + chr1_1:3967897-3967916 Msa0002110:intron 50.0%
AAGAGGAACTTGGTCAGCCA+TGG + chr1_1:3967981-3968000 Msa0002110:CDS 50.0%
ATATGCAGCATCTCTCGGAC+AGG + chr1_1:3968157-3968176 Msa0002110:intron 50.0%
GAAGAGCCAAACCAAGGTTC+CGG - chr1_1:3968280-3968299 None:intergenic 50.0%
TAGGTCTCCATTGACGTGGT+TGG + chr1_1:3968468-3968487 Msa0002110:intron 50.0%
AGGTCTCCATTGACGTGGTT+GGG + chr1_1:3968469-3968488 Msa0002110:intron 50.0%
AACCAACCCAACCACGTCAA+TGG - chr1_1:3968478-3968497 None:intergenic 50.0%
GATGAAGAAAGACCTGCCAC+AGG + chr1_1:3968576-3968595 Msa0002110:CDS 50.0%
CGGACAAGTCCTGACTTACA+TGG + chr1_1:3968880-3968899 Msa0002110:intron 50.0%
GGACGTGTGGGAAGTTGTAA+AGG - chr1_1:3969507-3969526 None:intergenic 50.0%
ACGGAGCATGGAGAAACAGA+GGG - chr1_1:3969587-3969606 None:intergenic 50.0%
AACGGAGCATGGAGAAACAG+AGG - chr1_1:3969588-3969607 None:intergenic 50.0%
GGTCCTCTAAATTCAGGGAC+TGG + chr1_1:3970427-3970446 Msa0002110:intron 50.0%
TTTCATGCTGATCCTCACCC+GGG + chr1_1:3970652-3970671 Msa0002110:CDS 50.0%
CTATGGCTGGATAATCCCGA+TGG - chr1_1:3972005-3972024 None:intergenic 50.0%
GCTTGCAAAGGTCTTTGACC+AGG + chr1_1:3972089-3972108 Msa0002110:CDS 50.0%
!! ACCAGGCTTTAGAAGGTGGA+GGG + chr1_1:3972106-3972125 Msa0002110:CDS 50.0%
! TCTTGACGGATGAATCCCCT+CGG + chr1_1:3972916-3972935 Msa0002110:CDS 50.0%
! TAAAGCACTCCTTAGCCGAG+GGG - chr1_1:3972934-3972953 None:intergenic 50.0%
! GTAAAGCACTCCTTAGCCGA+GGG - chr1_1:3972935-3972954 None:intergenic 50.0%
! ATCCTCTCCACCTCCACTTT+TGG - chr1_1:3973045-3973064 None:intergenic 50.0%
GAGGTGGAGAGGATCTGAAA+GGG + chr1_1:3973051-3973070 Msa0002110:CDS 50.0%
! AAAGGGAGTATGGCTGAGCT+TGG + chr1_1:3973068-3973087 Msa0002110:CDS 50.0%
! AAGGGAGTATGGCTGAGCTT+GGG + chr1_1:3973069-3973088 Msa0002110:CDS 50.0%
CCGGCAAGAGATATTCTGAC+CGG - chr1_1:3973106-3973125 None:intergenic 50.0%
CCGGTCAGAATATCTCTTGC+CGG + chr1_1:3973103-3973122 Msa0002110:CDS 50.0%
CGGTCAGAATATCTCTTGCC+GGG + chr1_1:3973104-3973123 Msa0002110:CDS 50.0%
!! AGGGCATTGATGCTGTGACA+AGG + chr1_1:3973994-3974013 Msa0002110:CDS 50.0%
!! GGGCATTGATGCTGTGACAA+GGG + chr1_1:3973995-3974014 Msa0002110:CDS 50.0%
! GGCTTAAAGCGTCCAATGGT+AGG - chr1_1:3974086-3974105 None:intergenic 50.0%
!! ATGGTGGGTATAAGAGCTGC+GGG - chr1_1:3974107-3974126 None:intergenic 50.0%
ATTTGTCTGTGGGTGGCCTT+AGG + chr1_1:3974341-3974360 Msa0002110:intron 50.0%
GCAACACTGGCAGAAGTTCT+TGG - chr1_1:3974389-3974408 None:intergenic 50.0%
AGAACTTCTGCCAGTGTTGC+CGG + chr1_1:3974389-3974408 Msa0002110:CDS 50.0%
AGCACTTTAGCAGAGATGCC+CGG - chr1_1:3974411-3974430 None:intergenic 50.0%
GTGTGGTGCGAAGTGTGACA+AGG - chr1_1:3965064-3965083 None:intergenic 55.0%
CGATTCCGCGGTAGATGAGT+TGG - chr1_1:3965256-3965275 None:intergenic 55.0%
GAATGGGACGAGCGGAGTAA+AGG - chr1_1:3965281-3965300 None:intergenic 55.0%
GTTGTTGTGGCGGTGGGAAT+GGG - chr1_1:3965297-3965316 None:intergenic 55.0%
CGGAGATACGGTTAGAACGC+CGG - chr1_1:3965334-3965353 None:intergenic 55.0%
! TTTAGGATCGGTGGCGACAG+CGG - chr1_1:3965354-3965373 None:intergenic 55.0%
! AGGAGCAGGTTTAGGATCGG+TGG - chr1_1:3965363-3965382 None:intergenic 55.0%
TTGACGGTAGTGACAGGAGC+AGG - chr1_1:3965377-3965396 None:intergenic 55.0%
GCTCCTGTCACTACCGTCAA+CGG + chr1_1:3965377-3965396 Msa0002110:CDS 55.0%
GAACCGTTGACGGTAGTGAC+AGG - chr1_1:3965383-3965402 None:intergenic 55.0%
ACACCGTTGACAGGTTTGGC+AGG - chr1_1:3965422-3965441 None:intergenic 55.0%
ACCTGTCAACGGTGTCTCTG+GGG + chr1_1:3965427-3965446 Msa0002110:CDS 55.0%
GCTTGCGTGCATTCTTGACG+TGG + chr1_1:3966410-3966429 Msa0002110:intron 55.0%
TGCGTGCATTCTTGACGTGG+TGG + chr1_1:3966413-3966432 Msa0002110:intron 55.0%
AGGGTAGACCGCAATTAGGG+TGG - chr1_1:3967062-3967081 None:intergenic 55.0%
GGCGCCTTAATATCGGCACT+TGG + chr1_1:3967084-3967103 Msa0002110:intron 55.0%
TAGCCCTGGCAACCTCATTC+TGG - chr1_1:3967313-3967332 None:intergenic 55.0%
! TTGTTCTTGGTGGGGGTGTG+GGG + chr1_1:3967898-3967917 Msa0002110:intron 55.0%
ATGGTCTGGAAAGCTACCGG+CGG - chr1_1:3968044-3968063 None:intergenic 55.0%
GGTATATAAGGGCCGCCTGA+AGG + chr1_1:3968178-3968197 Msa0002110:CDS 55.0%
AAGGGCCGCCTGAAGGAAAA+TGG + chr1_1:3968185-3968204 Msa0002110:CDS 55.0%
AGGGCCGCCTGAAGGAAAAT+GGG + chr1_1:3968186-3968205 Msa0002110:CDS 55.0%
CTCCATTGACGTGGTTGGGT+TGG + chr1_1:3968473-3968492 Msa0002110:intron 55.0%
!! TGGTTGGGTTGGTTGACGAG+TGG + chr1_1:3968484-3968503 Msa0002110:intron 55.0%
!! GGTTGGGTTGGTTGACGAGT+GGG + chr1_1:3968485-3968504 Msa0002110:intron 55.0%
GTATTGGACTCACCTGTGGC+AGG - chr1_1:3968591-3968610 None:intergenic 55.0%
AGGACTTGTCCGTTGAGAGC+AGG - chr1_1:3968872-3968891 None:intergenic 55.0%
!! GAAAAGCGTGGTGGACGTGT+GGG - chr1_1:3969519-3969538 None:intergenic 55.0%
!! AGAAAAGCGTGGTGGACGTG+TGG - chr1_1:3969520-3969539 None:intergenic 55.0%
TTCATGCTGATCCTCACCCG+GGG + chr1_1:3970653-3970672 Msa0002110:CDS 55.0%
GAGTGCGGATCATATTCCCC+GGG - chr1_1:3970672-3970691 None:intergenic 55.0%
GGAGTGCGGATCATATTCCC+CGG - chr1_1:3970673-3970692 None:intergenic 55.0%
!! GACCAGGCTTTAGAAGGTGG+AGG + chr1_1:3972105-3972124 Msa0002110:CDS 55.0%
!! CCAGGCTTTAGAAGGTGGAG+GGG + chr1_1:3972107-3972126 Msa0002110:CDS 55.0%
!!! AGGGCTATCGGGGTTTTGGA+AGG + chr1_1:3972225-3972244 Msa0002110:CDS 55.0%
!!! GGGCTATCGGGGTTTTGGAA+GGG + chr1_1:3972226-3972245 Msa0002110:CDS 55.0%
GACAGGATGCACGGGAGAAA+TGG + chr1_1:3972651-3972670 Msa0002110:intron 55.0%
! CGTAAAGCACTCCTTAGCCG+AGG - chr1_1:3972936-3972955 None:intergenic 55.0%
ACAGCTGCCAAAAGTGGAGG+TGG + chr1_1:3973035-3973054 Msa0002110:CDS 55.0%
TGCCAAAAGTGGAGGTGGAG+AGG + chr1_1:3973040-3973059 Msa0002110:CDS 55.0%
GGAGGTGGAGAGGATCTGAA+AGG + chr1_1:3973050-3973069 Msa0002110:CDS 55.0%
ATCTCAACAACCGCAGCCAG+TGG + chr1_1:3973142-3973161 Msa0002110:CDS 55.0%
AACCGCAGCCAGTGGAAACA+CGG + chr1_1:3973150-3973169 Msa0002110:CDS 55.0%
CTTAAGCGCCATAGGCAGCA+TGG - chr1_1:3973749-3973768 None:intergenic 55.0%
! TGCGGGCTTAAAGCGTCCAA+TGG - chr1_1:3974090-3974109 None:intergenic 55.0%
GTGCTGGAGTTCTTGACTGC+AGG + chr1_1:3974167-3974186 Msa0002110:CDS 55.0%
GAACTTCTGCCAGTGTTGCC+GGG + chr1_1:3974390-3974409 Msa0002110:CDS 55.0%
GGTTGTTGTGGCGGTGGGAA+TGG - chr1_1:3965298-3965317 None:intergenic 60.0%
AGGGAGGTTGTTGTGGCGGT+GGG - chr1_1:3965303-3965322 None:intergenic 60.0%
GGAGAGGGAGGTTGTTGTGG+CGG - chr1_1:3965307-3965326 None:intergenic 60.0%
GACGGAGAGGGAGGTTGTTG+TGG - chr1_1:3965310-3965329 None:intergenic 60.0%
TACGGTTAGAACGCCGGCGA+CGG - chr1_1:3965328-3965347 None:intergenic 60.0%
CCGTTGACAGGTTTGGCAGG+CGG - chr1_1:3965419-3965438 None:intergenic 60.0%
CCGCCTGCCAAACCTGTCAA+CGG + chr1_1:3965416-3965435 Msa0002110:CDS 60.0%
ACCCCAGAGACACCGTTGAC+AGG - chr1_1:3965431-3965450 None:intergenic 60.0%
ATGCGAGTTGCAACGGAGCG+AGG - chr1_1:3966283-3966302 None:intergenic 60.0%
! TTCTCGGGTTGCGTGGGATG+TGG + chr1_1:3966336-3966355 Msa0002110:CDS 60.0%
GACGTGGTGGTCATTGTCGG+TGG + chr1_1:3966426-3966445 Msa0002110:intron 60.0%
! TGTTCTTGGTGGGGGTGTGG+GGG + chr1_1:3967899-3967918 Msa0002110:intron 60.0%
TCAACCTCTCCCATTGCCGC+CGG + chr1_1:3968025-3968044 Msa0002110:CDS 60.0%
GGAAAGCTACCGGCGGCAAT+GGG - chr1_1:3968037-3968056 None:intergenic 60.0%
TGGAAAGCTACCGGCGGCAA+TGG - chr1_1:3968038-3968057 None:intergenic 60.0%
GGGCCGCCTGAAGGAAAATG+GGG + chr1_1:3968187-3968206 Msa0002110:CDS 60.0%
CGGATCATATTCCCCGGGTG+AGG - chr1_1:3970667-3970686 None:intergenic 60.0%
!! CCCCTCCACCTTCTAAAGCC+TGG - chr1_1:3972110-3972129 None:intergenic 60.0%
CGGATGAATCCCCTCGGCTA+AGG + chr1_1:3972922-3972941 Msa0002110:CDS 60.0%
ACCGCAGCCAGTGGAAACAC+GGG + chr1_1:3973151-3973170 Msa0002110:CDS 60.0%
GGCTACTGCCATGCTGCCTA+TGG + chr1_1:3973738-3973757 Msa0002110:intron 60.0%
GAGGGAGGTTGTTGTGGCGG+TGG - chr1_1:3965304-3965323 None:intergenic 65.0%
ACAACCTCCCTCTCCGTCGC+CGG + chr1_1:3965312-3965331 Msa0002110:CDS 65.0%
TAGAACGCCGGCGACGGAGA+GGG - chr1_1:3965322-3965341 None:intergenic 65.0%
TTAGAACGCCGGCGACGGAG+AGG - chr1_1:3965323-3965342 None:intergenic 65.0%
CGGTGGCGACAGCGGAGATA+CGG - chr1_1:3965346-3965365 None:intergenic 65.0%
! GTTCTTGGTGGGGGTGTGGG+GGG + chr1_1:3967900-3967919 Msa0002110:intron 65.0%
! GCCCGTGTTTCCACTGGCTG+CGG - chr1_1:3973155-3973174 None:intergenic 65.0%
AGGGCTGCCCGTGTTTCCAC+TGG - chr1_1:3973161-3973180 None:intergenic 65.0%
GCAGAGATGCCCGGCAACAC+TGG - chr1_1:3974402-3974421 None:intergenic 65.0%
GGCGGTGGGAATGGGACGAG+CGG - chr1_1:3965289-3965308 None:intergenic 70.0%
GCTACCGGCGGCAATGGGAG+AGG - chr1_1:3968032-3968051 None:intergenic 70.0%
AACGCCGGCGACGGAGAGGG+AGG - chr1_1:3965319-3965338 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3965052 3974704 3965052 ID=Msa0002110;Name=Msa0002110
chr1_1 mRNA 3965052 3974704 3965052 ID=Msa0002110-mRNA-1;Parent=Msa0002110;Name=Msa0002110-mRNA-1;_AED=0.09;_eAED=0.09;_QI=160|0.92|0.85|1|0.92|0.85|14|207|760
chr1_1 exon 3965052 3965162 3965052 ID=Msa0002110-mRNA-1:exon:1148;Parent=Msa0002110-mRNA-1
chr1_1 exon 3965187 3965448 3965187 ID=Msa0002110-mRNA-1:exon:1149;Parent=Msa0002110-mRNA-1
chr1_1 exon 3965540 3965689 3965540 ID=Msa0002110-mRNA-1:exon:1150;Parent=Msa0002110-mRNA-1
chr1_1 exon 3966208 3966378 3966208 ID=Msa0002110-mRNA-1:exon:1151;Parent=Msa0002110-mRNA-1
chr1_1 exon 3967314 3967457 3967314 ID=Msa0002110-mRNA-1:exon:1152;Parent=Msa0002110-mRNA-1
chr1_1 exon 3967941 3968046 3967941 ID=Msa0002110-mRNA-1:exon:1153;Parent=Msa0002110-mRNA-1
chr1_1 exon 3968165 3968317 3968165 ID=Msa0002110-mRNA-1:exon:1154;Parent=Msa0002110-mRNA-1
chr1_1 exon 3968548 3968597 3968548 ID=Msa0002110-mRNA-1:exon:1155;Parent=Msa0002110-mRNA-1
chr1_1 exon 3969741 3969884 3969741 ID=Msa0002110-mRNA-1:exon:1156;Parent=Msa0002110-mRNA-1
chr1_1 exon 3970634 3970721 3970634 ID=Msa0002110-mRNA-1:exon:1157;Parent=Msa0002110-mRNA-1
chr1_1 exon 3971938 3972311 3971938 ID=Msa0002110-mRNA-1:exon:1158;Parent=Msa0002110-mRNA-1
chr1_1 exon 3972912 3973235 3972912 ID=Msa0002110-mRNA-1:exon:1159;Parent=Msa0002110-mRNA-1
chr1_1 exon 3973987 3974217 3973987 ID=Msa0002110-mRNA-1:exon:1160;Parent=Msa0002110-mRNA-1
chr1_1 exon 3974363 3974704 3974363 ID=Msa0002110-mRNA-1:exon:1161;Parent=Msa0002110-mRNA-1
chr1_1 five_prime_UTR 3965052 3965162 3965052 ID=Msa0002110-mRNA-1:five_prime_utr;Parent=Msa0002110-mRNA-1
chr1_1 five_prime_UTR 3965187 3965235 3965187 ID=Msa0002110-mRNA-1:five_prime_utr;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3965236 3965448 3965236 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3965540 3965689 3965540 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3966208 3966378 3966208 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3967314 3967457 3967314 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3967941 3968046 3967941 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3968165 3968317 3968165 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3968548 3968597 3968548 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3969741 3969884 3969741 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3970634 3970721 3970634 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3971938 3972311 3971938 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3972912 3973235 3972912 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3973987 3974217 3973987 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 CDS 3974363 3974497 3974363 ID=Msa0002110-mRNA-1:cds;Parent=Msa0002110-mRNA-1
chr1_1 three_prime_UTR 3974498 3974704 3974498 ID=Msa0002110-mRNA-1:three_prime_utr;Parent=Msa0002110-mRNA-1
Gene Sequence

>Msa0002110

ATGGATACAGCATCATCCCAACTCATCTACCGCGGAATCGATCCTTTACTCCGCTCGTCCCATTCCCACCGCCACAACAACCTCCCTCTCCGTCGCCGGCGTTCTAACCGTATCTCCGCTGTCGCCACCGATCCTAAACCTGCTCCTGTCACTACCGTCAACGGTTCTTCTTCAAGGTCTCCGCCTGCCAAACCTGTCAACGGTGTCTCTGGGAGAATTGGTGATGTTTCGAAGGAGATTAAGAGAGTGAGAGCGCAAATGGAAGAAGATGAACAATTGGCAAGTCTTATGAGAGGTCTTCGTGGTCAGAGTCTTAATGATTCGCTCTTTGCTGAGGATGATGTTCAGCTACGTCTTGTTGAGGTAGATGAAAGTAGTGAATTTCTACCATTGGTGTATGATCCAGCTAGTATTACTGCATATTGGGGAAAACGTCCTCGCTCCGTTGCAACTCGCATTGTGCAGTTATTATCTGTTGCTGGAGGTTTTCTTTCTCGGGTTGCGTGGGATGTGGTTAACAAGAAGGTTAAAGAGAATGAGGTTGCCAGGGCTATTGAAATACGTGAAATTGTGACATCTTTGGGTCCAGCATACATAAAACTTGGGCAAGCATTGAGCATACGACCTGATATACTGTCACCTGCAGCAATGACAGAGTTGCAGAAGCTCTGTGATAAAGTTCCTTCATTTGCAGATGATGTGGCTATGGCTCTAATTGAAGAGGAACTTGGTCAGCCATGGCAAAATGTCTATTCTGAATTATCAACCTCTCCCATTGCCGCCGCATCTCTCGGACAGGTATATAAGGGCCGCCTGAAGGAAAATGGGGATTTGGTTGCTGTTAAAGTGCAAAGACCTTTTGTTCTCGAGACAGTTACCATTGATTTATTCATTATCCGGAACCTTGGTTTGGCTCTTCGAAAATTTCCTCAGGCAAGTGAAAATGGAGACCGCTTCGCCGAAATGATGAAGAAAGACCTGCCACAGGTTGTAATACCAAGAACTTACAGCAAGTATACATCAAGGAGGGTTCTTACAACAGAATGGATTGACGGAGAGAAGCTGTCACAGAGCAAAGAAAGCAATGTCGGAGAATTAGTTAATGTTGGAGTCATCTGCTACCTAAAACAGCTGCTTGATACTGGCTTTTTTCATGCTGATCCTCACCCGGGGAATATGATCCGCACTCCTGATGGAAAACTTGCAATACTTGACTTTGGGCTTGTTACAAAATTGACCGACGATCAAAAGTATGGAATGATTGAAGCAATTGCTCATCTCATCCATCGGGATTATCCAGCCATAGTGAAAGACTTCGTTAAACTTGGTTTCATCCCAGATGGAGTCAATTTAGATCCTATCTTGCCAGTGCTTGCAAAGGTCTTTGACCAGGCTTTAGAAGGTGGAGGGGCAAAAAACATCAACTTTCAGGAGCTGGCATCAGATTTAGCACAAATTACCTTTGATTATCCTTTTAGGATACCCCCATACTTTGCCCTTATAATTAGGGCTATCGGGGTTTTGGAAGGGATAGCTTTAGTAGGAAATCCTGATTTTGCCATTGTTGATGAAGCCTATCCATATATTGCACAGAGACTCTTGACGGATGAATCCCCTCGGCTAAGGAGTGCTTTACGTTACACTATATATGGGAAATCTGGAGTTTTCGATGCTGAAAGATTTATTGATGTCATGCAAGCCTTCGAGAATTTTATTACAGCTGCCAAAAGTGGAGGTGGAGAGGATCTGAAAGGGAGTATGGCTGAGCTTGGGCTTATTACTAACCGGTCAGAATATCTCTTGCCGGGATTCCAGTCTGTAACATCTCAACAACCGCAGCCAGTGGAAACACGGGCAGCCCTAGCATTTTTGCTGTCTGATAAGGGGAATTTTTTCCGAGAATTTCTTTTGGACGAGATTGTCAAGGGCATTGATGCTGTGACAAGGGAACAAATGGTAAGAATTATGTCCTTACTAGGAGTTCAGAATGCAAGCCCTATTTTCGGTATGGTACCTACCATTGGACGCTTTAAGCCCGCAGCTCTTATACCCACCATAACTGAAGAGGATAAAGTTATACTGAACAATGTCCAGAAAGTGCTGGAGTTCTTGACTGCAGGAAGCACTCTGTCAAGCACATCTAGTCAGGCTCTCAATGTTCCTCAGATTATCCAAGAACTTCTGCCAGTGTTGCCGGGCATCTCTGCTAAAGTGCTTCCTGATGTTCTTAGCAGATTATCTTCTCGGGTATTAGCGCGATTAATTCGTGATGCATTTTTGTAA
Protein sequence

>Msa0002110

MDTASSQLIYRGIDPLLRSSHSHRHNNLPLRRRRSNRISAVATDPKPAPVTTVNGSSSRSPPAKPVNGVSGRIGDVSKEIKRVRAQMEEDEQLASLMRGLRGQSLNDSLFAEDDVQLRLVEVDESSEFLPLVYDPASITAYWGKRPRSVATRIVQLLSVAGGFLSRVAWDVVNKKVKENEVARAIEIREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFADDVAMALIEEELGQPWQNVYSELSTSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLALRKFPQASENGDRFAEMMKKDLPQVVIPRTYSKYTSRRVLTTEWIDGEKLSQSKESNVGELVNVGVICYLKQLLDTGFFHADPHPGNMIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYPAIVKDFVKLGFIPDGVNLDPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLKGSMAELGLITNRSEYLLPGFQSVTSQQPQPVETRAALAFLLSDKGNFFREFLLDEIVKGIDAVTREQMVRIMSLLGVQNASPIFGMVPTIGRFKPAALIPTITEEDKVILNNVQKVLEFLTAGSTLSSTSSQALNVPQIIQELLPVLPGISAKVLPDVLSRLSSRVLARLIRDAFL*