AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095810 MtrunA17_Chr1g0169361 99.107 784 7 0 1 784 1 784 0.0 1573
Msa0095810 MtrunA17_Chr6g0465161 36.858 681 353 15 133 784 78 710 2.58e-135 417
Msa0095810 MtrunA17_Chr4g0012061 42.888 464 256 5 132 589 100 560 3.57e-131 407
Msa0095810 MtrunA17_Chr7g0230671 37.353 597 329 10 132 708 88 659 1.58e-123 386
Msa0095810 MtrunA17_Chr3g0136721 37.059 510 289 7 183 677 134 626 4.40e-104 335
Msa0095810 MtrunA17_Chr1g0148121 39.093 463 259 7 148 600 95 544 6.36e-101 325
Msa0095810 MtrunA17_Chr1g0199921 32.311 489 299 8 126 585 132 617 5.53e-78 268
Msa0095810 MtrunA17_Chr3g0120791 34.169 439 259 9 142 558 150 580 2.29e-64 228
Msa0095810 MtrunA17_Chr8g0382921 33.002 403 230 10 187 552 198 597 5.27e-55 202
Msa0095810 MtrunA17_Chr3g0129101 32.614 417 239 10 173 552 195 606 1.69e-54 201
Msa0095810 MtrunA17_Chr5g0428451 26.190 378 240 7 187 529 128 501 6.54e-34 137
Msa0095810 MtrunA17_Chr4g0057941 28.966 290 169 9 177 443 62 337 1.55e-28 120
Msa0095810 MtrunA17_Chr1g0147481 26.781 351 220 11 144 468 82 421 1.02e-23 107
Msa0095810 MtrunA17_Chr3g0113361 25.616 406 243 12 174 535 76 466 4.91e-22 100
Msa0095810 MtrunA17_Chr4g0048521 26.804 291 178 7 195 455 229 514 4.62e-21 98.2
Msa0095810 MtrunA17_Chr8g0360981 25.000 288 187 6 187 446 210 496 1.10e-18 90.9
Msa0095810 MtrunA17_Chr5g0433911 26.449 276 172 9 198 455 77 339 1.18e-18 90.1
Msa0095810 MtrunA17_Chr2g0281061 25.342 292 194 6 187 455 218 508 1.24e-18 90.5
Msa0095810 MtrunA17_Chr1g0193751 25.874 286 188 10 197 469 240 514 1.64e-13 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095810 AT3G24190.1 80.454 793 146 4 1 784 1 793 0.0 1268
Msa0095810 AT1G79600.1 42.581 465 258 5 132 590 95 556 1.75e-128 400
Msa0095810 AT1G71810.1 35.456 691 359 17 121 784 62 692 2.17e-126 394
Msa0095810 AT5G24970.3 36.770 514 277 8 183 669 136 628 7.45e-102 330
Msa0095810 AT4G31390.1 38.696 460 265 6 148 600 131 580 3.94e-101 327
Msa0095810 AT5G24970.2 36.770 514 277 8 183 669 175 667 5.27e-101 329
Msa0095810 AT5G24970.1 36.187 514 277 9 183 669 136 625 2.29e-97 318
Msa0095810 AT4G31390.2 36.304 460 251 6 148 600 131 555 1.05e-90 299
Msa0095810 AT4G31390.3 39.695 393 220 6 217 602 1 383 4.15e-88 286
Msa0095810 AT2G39190.2 33.958 480 290 7 129 584 142 618 1.87e-82 280
Msa0095810 AT3G07700.1 34.867 413 249 8 169 568 171 576 5.99e-64 227
Msa0095810 AT3G07700.2 34.867 413 249 8 169 568 171 576 5.99e-64 227
Msa0095810 AT3G07700.4 34.867 413 249 8 169 568 171 576 5.99e-64 227
Msa0095810 AT3G07700.3 33.784 444 241 11 169 568 171 605 2.08e-59 215
Msa0095810 AT5G64940.1 33.580 405 227 9 187 552 222 623 2.02e-53 198
Msa0095810 AT5G64940.2 33.580 405 227 9 187 552 222 623 2.02e-53 198
Msa0095810 AT5G05200.1 27.105 380 234 7 187 529 129 502 4.27e-33 135
Msa0095810 AT2G39190.1 36.564 227 137 5 129 352 142 364 9.28e-33 131
Msa0095810 AT4G24810.6 25.916 382 254 11 177 537 16 389 7.23e-31 127
Msa0095810 AT4G24810.1 25.916 382 254 11 177 537 16 389 7.23e-31 127
Msa0095810 AT4G24810.4 28.070 285 183 7 177 443 16 296 8.79e-31 124
Msa0095810 AT4G24810.5 28.070 285 183 7 177 443 16 296 1.28e-30 123
Msa0095810 AT4G24810.2 25.916 382 254 11 177 537 59 432 1.71e-30 126
Msa0095810 AT4G24810.3 25.707 389 253 12 177 537 16 396 2.77e-29 122
Msa0095810 AT5G50330.1 24.590 305 205 5 184 468 65 364 9.84e-27 115
Msa0095810 AT1G65950.1 27.830 424 252 17 174 575 89 480 9.09e-26 113
Msa0095810 AT1G65950.2 32.353 272 161 11 174 431 89 351 9.28e-26 112
Msa0095810 AT5G24810.1 28.387 310 185 9 184 468 98 395 4.10e-22 102
Msa0095810 AT2G40090.1 29.560 318 195 11 175 467 79 392 6.00e-21 97.8
Msa0095810 AT5G50330.2 22.756 312 199 7 177 468 59 348 6.45e-21 97.1
Msa0095810 AT1G61640.3 27.241 290 168 11 195 449 221 502 7.12e-20 94.7
Msa0095810 AT1G61640.1 26.761 284 177 8 195 449 221 502 1.22e-19 94.4
Msa0095810 AT1G11390.1 24.825 286 189 5 195 455 224 508 1.79e-19 93.6
Msa0095810 AT5G24810.2 26.686 341 182 11 184 468 98 426 5.47e-19 92.8
Msa0095810 AT4G01660.1 27.304 293 175 11 197 469 238 512 7.04e-16 82.4
Msa0095810 AT1G61640.2 26.442 208 134 7 195 389 221 422 4.44e-11 66.6

Find 238 sgRNAs with CRISPR-Local

Find 599 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACTTTGCCCTTATAATT+AGG 0.089687 1_3:+1183352 Msa0095810:CDS
GCTTTACGTTACACTATATA+TGG 0.194317 1_3:+1184098 Msa0095810:CDS
TCAAGAACTCCAGCACTTTC+TGG 0.201641 1_3:-1185313 None:intergenic
CCCCGATAGCCCTAATTATA+AGG 0.235389 1_3:-1183362 None:intergenic
AGCTAGTATTACTGCATATT+GGG 0.247428 1_3:+1177382 Msa0095810:CDS
ATCCTCTCCACCTCCACTTT+TGG 0.254419 1_3:-1184192 None:intergenic
ATACTTTGCCCTTATAATTA+GGG 0.262467 1_3:+1183353 Msa0095810:CDS
ATCTCTCGGACAGGTATATA+AGG 0.270512 1_3:+1179307 Msa0095810:CDS
GATTAATGAACAAGGGTAAA+TGG 0.271358 1_3:-1185747 None:intergenic
AAACCTGTCAACGGTGTCTC+TGG 0.278838 1_3:+1176551 Msa0095810:CDS
AATTAGGGCTATCGGGGTTT+TGG 0.280919 1_3:+1183368 Msa0095810:CDS
AAGGGCCGCCTGAAGGAAAA+TGG 0.288141 1_3:+1179326 Msa0095810:CDS
TATATTATATTTATATATAC+TGG 0.288472 1_3:-1185723 None:intergenic
AATAGCCAGCATAATTGATT+TGG 0.293002 1_3:-1185825 None:intergenic
GTAGGTACCATACCGAAAAT+AGG 0.294048 1_3:-1185218 None:intergenic
CAGCTAGTATTACTGCATAT+TGG 0.297042 1_3:+1177381 Msa0095810:CDS
AATTATACCTGTGCAATATA+TGG 0.302271 1_3:-1183444 None:intergenic
ACGTGAAATTGTGACATCTT+TGG 0.305343 1_3:+1178481 Msa0095810:CDS
AGAACTTCTGCCAGTGTTGC+CGG 0.306484 1_3:+1185542 Msa0095810:CDS
GGTTGTTGTGGCGGTGGGAA+TGG 0.314697 1_3:-1176421 None:intergenic
GTATACTTGCTGTAAGTTCT+TGG 0.331390 1_3:-1180894 None:intergenic
CCCTTATAATTAGGGCTATC+GGG 0.332300 1_3:+1183361 Msa0095810:CDS
CGTGAAATTGTGACATCTTT+GGG 0.332945 1_3:+1178482 Msa0095810:CDS
TTTATTTGCATTCAGAGAAT+TGG 0.338434 1_3:+1176651 Msa0095810:intron
GTTGTTGTGGCGGTGGGAAT+GGG 0.338778 1_3:-1176420 None:intergenic
GGATCTAAATTGACTCCATC+TGG 0.344181 1_3:-1183201 None:intergenic
TTATTTCAGCTGCTTGATAC+TGG 0.344397 1_3:+1181768 Msa0095810:intron
TTCTTAGCAGATTATCTTCT+CGG 0.345784 1_3:+1185592 Msa0095810:CDS
AACTTTATCCTCTTCAGTTA+TGG 0.348424 1_3:-1185276 None:intergenic
CTAATTATAAGGGCAAAGTA+TGG 0.349214 1_3:-1183351 None:intergenic
TTTAACGAAGTCTTTCACTA+TGG 0.351984 1_3:-1183166 None:intergenic
CCTGAAGGAAAATGGGGATT+TGG 0.353495 1_3:+1179334 Msa0095810:CDS
GTCTTTGACCAGGCTTTAGA+AGG 0.356423 1_3:+1183246 Msa0095810:CDS
TGTGGGTGGATTAAGCATTA+AGG 0.366442 1_3:-1185664 None:intergenic
TTGACCGACGATCAAAAGTA+TGG 0.371660 1_3:+1183099 Msa0095810:CDS
GCCCTTATAATTAGGGCTAT+CGG 0.378622 1_3:+1183360 Msa0095810:CDS
CAGGTCTTTCTTCATCATTT+CGG 0.380540 1_3:-1179709 None:intergenic
CCGGTCAGAATATCTCTTGC+CGG 0.382765 1_3:+1184253 Msa0095810:CDS
CCATTGATTTATTCATTATC+CGG 0.385394 1_3:+1179399 Msa0095810:CDS
TACACTATATATGGGAAATC+TGG 0.386187 1_3:+1184107 Msa0095810:CDS
GCAACACTGGCAGAAGTTCT+TGG 0.389343 1_3:-1185539 None:intergenic
AGGTCTCCATTGACGTGGTT+GGG 0.391236 1_3:+1179610 Msa0095810:intron
ACGAAGTCTTTCACTATGGC+TGG 0.396425 1_3:-1183162 None:intergenic
GTGCAGTTATTATCTGTTGC+TGG 0.398582 1_3:+1177437 Msa0095810:CDS
TTTGCAAGCACTGGCAAGAT+AGG 0.409252 1_3:-1183222 None:intergenic
GAGGGAGGTTGTTGTGGCGG+TGG 0.410846 1_3:-1176427 None:intergenic
CATTATCCGGAACCTTGGTT+TGG 0.410931 1_3:+1179412 Msa0095810:CDS
AGAGACACCGTTGACAGGTT+TGG 0.413955 1_3:-1176549 None:intergenic
TATGTGAATGAAGGTGAAAA+TGG 0.419960 1_3:+1179675 Msa0095810:CDS
CCGTCAACGGTTCTTCTTCA+AGG 0.422670 1_3:+1176516 Msa0095810:CDS
TAAGAGAGTGAGAGCGCAAA+TGG 0.424054 1_3:+1176692 Msa0095810:CDS
TTGGAAGGGATAGCTTTAGT+AGG 0.425825 1_3:+1183387 Msa0095810:CDS
TAGGTCTCCATTGACGTGGT+TGG 0.426485 1_3:+1179609 Msa0095810:intron
CCCCTCCACCTTCTAAAGCC+TGG 0.432654 1_3:-1183254 None:intergenic
AGCTTGGGCTTATTACTAAC+CGG 0.433633 1_3:+1184234 Msa0095810:CDS
TGGAAAGCTACCGGCGGCAA+TGG 0.437249 1_3:-1179176 None:intergenic
GGTCCAGCATACATAAAACT+TGG 0.438925 1_3:+1178503 Msa0095810:CDS
GGCTCTTCGAAAATTTCCTC+AGG 0.440365 1_3:+1179433 Msa0095810:CDS
CCCGATAGCCCTAATTATAA+GGG 0.441218 1_3:-1183361 None:intergenic
GATAATCTGCTAAGAACATC+AGG 0.444598 1_3:-1185585 None:intergenic
GCCCGTGTTTCCACTGGCTG+CGG 0.444691 1_3:-1184302 None:intergenic
GTAGTGACAGGAGCAGGTTT+AGG 0.446333 1_3:-1176494 None:intergenic
TCATCAACAATGGCAAAATC+AGG 0.448007 1_3:-1183414 None:intergenic
AGAGGATCTGAAAGGGAGTA+TGG 0.453042 1_3:+1184208 Msa0095810:CDS
GCTGCAGGTGACAGTATATC+AGG 0.453190 1_3:-1178545 None:intergenic
AATGGAAGAAGATGAACAAT+TGG 0.455274 1_3:+1176710 Msa0095810:CDS
AAACTTGCAATACTTGACTT+TGG 0.456974 1_3:+1181843 Msa0095810:CDS
GAAGAGCCAAACCAAGGTTC+CGG 0.457788 1_3:-1179418 None:intergenic
TTCTCGGGTTGCGTGGGATG+TGG 0.458420 1_3:+1177469 Msa0095810:CDS
GAGGTGGAGAGGATCTGAAA+GGG 0.458984 1_3:+1184201 Msa0095810:CDS
TGCAACTCTGTCATTGCTGC+AGG 0.460173 1_3:-1178560 None:intergenic
ATAACCAGAATGAGGTTGCC+AGG 0.461543 1_3:+1178447 Msa0095810:intron
TCTGTCAAGCACATCTAGTC+AGG 0.463598 1_3:+1185349 Msa0095810:CDS
ATTGTGTATATTTGACAGAA+TGG 0.465438 1_3:+1185687 Msa0095810:three_prime_UTR
AGGGAGGTTGTTGTGGCGGT+GGG 0.465926 1_3:-1176426 None:intergenic
CTTTACGTTACACTATATAT+GGG 0.466517 1_3:+1184099 Msa0095810:CDS
CCTCGTCCAAAAGAAATTCT+CGG 0.466532 1_3:-1184364 None:intergenic
GTCGGAGAATTAGTTAATGT+TGG 0.469559 1_3:+1180984 Msa0095810:CDS
ATTTGCAGATGATGTGGCTA+TGG 0.471517 1_3:+1179090 Msa0095810:CDS
AGTCATCTGCTACCTAAAAC+AGG 0.471762 1_3:+1181007 Msa0095810:CDS
AGGGCTGCCCGTGTTTCCAC+TGG 0.474496 1_3:-1184308 None:intergenic
GTGAAAGACTTCGTTAAACT+TGG 0.475881 1_3:+1183171 Msa0095810:CDS
TATTTATATATACTGGTATG+TGG 0.478038 1_3:-1185716 None:intergenic
TTCGGTATGGTACCTACCAT+TGG 0.478269 1_3:+1185224 Msa0095810:CDS
CTCCATTGACGTGGTTGGGT+TGG 0.481448 1_3:+1179614 Msa0095810:CDS
AGGGCCGCCTGAAGGAAAAT+GGG 0.482279 1_3:+1179327 Msa0095810:CDS
AACCAACCCAACCACGTCAA+TGG 0.482943 1_3:-1179616 None:intergenic
GTAACTGTCTCGAGAACAAA+AGG 0.487145 1_3:-1179377 None:intergenic
AACCTGTCAACGGTGTCTCT+GGG 0.487214 1_3:+1176552 Msa0095810:CDS
ACACCGTTGACAGGTTTGGC+AGG 0.488797 1_3:-1176545 None:intergenic
CGATTCCGCGGTAGATGAGT+TGG 0.493275 1_3:-1176379 None:intergenic
CCGGATAATGAATAAATCAA+TGG 0.495772 1_3:-1179399 None:intergenic
TTTATTACAGCTGCCAAAAG+TGG 0.497079 1_3:+1184179 Msa0095810:CDS
GACCAGGCTTTAGAAGGTGG+AGG 0.497384 1_3:+1183252 Msa0095810:CDS
TGCATTCTGAACTCCTAGTA+AGG 0.499806 1_3:-1185192 None:intergenic
GTAAGAATTATGTCCTTACT+AGG 0.500477 1_3:+1185179 Msa0095810:CDS
AAAGGGAGTATGGCTGAGCT+TGG 0.501167 1_3:+1184218 Msa0095810:CDS
TAGGTACCATACCGAAAATA+GGG 0.501824 1_3:-1185217 None:intergenic
GGTTGGGTTGGTTGACGAGT+GGG 0.502534 1_3:+1179626 Msa0095810:CDS
TCTTAGCAGATTATCTTCTC+GGG 0.503708 1_3:+1185593 Msa0095810:CDS
TAATTATAAGGGCAAAGTAT+GGG 0.504028 1_3:-1183350 None:intergenic
GCAGAGATGCCCGGCAACAC+TGG 0.505198 1_3:-1185552 None:intergenic
CGGTCAGAATATCTCTTGCC+GGG 0.507660 1_3:+1184254 Msa0095810:CDS
TTTATCCTCTTCAGTTATGG+TGG 0.508378 1_3:-1185273 None:intergenic
GGAAAGCTACCGGCGGCAAT+GGG 0.509268 1_3:-1179175 None:intergenic
GTGCTGGAGTTCTTGACTGC+AGG 0.510421 1_3:+1185320 Msa0095810:CDS
GGAGGGTTCTTACAACAGAA+TGG 0.511423 1_3:+1180922 Msa0095810:CDS
GGAGGTGGAGAGGATCTGAA+AGG 0.512007 1_3:+1184200 Msa0095810:CDS
TTCACGTATTTCAATAGCCC+TGG 0.512127 1_3:-1178465 None:intergenic
CCTTGAAGAAGAACCGTTGA+CGG 0.513312 1_3:-1176516 None:intergenic
TGCTGTGACAAGGGAACAAA+TGG 0.515122 1_3:+1185157 Msa0095810:CDS
AACCGCAGCCAGTGGAAACA+CGG 0.515912 1_3:+1184300 Msa0095810:CDS
ATAAGCCAAATCAATTATGC+TGG 0.516259 1_3:+1185820 Msa0095810:three_prime_UTR
CAATATGCAGTAATACTAGC+TGG 0.516377 1_3:-1177380 None:intergenic
AATATGATCCGCACTCCTGA+TGG 0.516841 1_3:+1181819 Msa0095810:CDS
TGTCAAATATACACAATTGT+GGG 0.517727 1_3:-1185681 None:intergenic
GCTCTAATTGAAGAGGAACT+TGG 0.518860 1_3:+1179112 Msa0095810:CDS
TTACTGATAGAGACTCTTGA+CGG 0.519048 1_3:+1184052 Msa0095810:intron
GAACTTCTGCCAGTGTTGCC+GGG 0.520134 1_3:+1185543 Msa0095810:CDS
CGGTGGCGACAGCGGAGATA+CGG 0.520949 1_3:-1176469 None:intergenic
CTGTCAAATATACACAATTG+TGG 0.521036 1_3:-1185682 None:intergenic
GCTTGCAAAGGTCTTTGACC+AGG 0.523145 1_3:+1183236 Msa0095810:CDS
ACCCCAGAGACACCGTTGAC+AGG 0.523907 1_3:-1176554 None:intergenic
TCAAAGACCTTTGCAAGCAC+TGG 0.524525 1_3:-1183231 None:intergenic
TCTCTCGGACAGGTATATAA+GGG 0.528745 1_3:+1179308 Msa0095810:CDS
GACGGAGAGGGAGGTTGTTG+TGG 0.530054 1_3:-1176433 None:intergenic
TTATTCATTATCCGGAACCT+TGG 0.531153 1_3:+1179407 Msa0095810:CDS
TCCTTCATTTGCAGATGATG+TGG 0.531156 1_3:+1179084 Msa0095810:CDS
TTGACGGTAGTGACAGGAGC+AGG 0.531550 1_3:-1176500 None:intergenic
GATGTTACAGACTGGAATCC+CGG 0.531571 1_3:-1184272 None:intergenic
CGGATGAATCCCCTCGGCTA+AGG 0.532282 1_3:+1184072 Msa0095810:CDS
TTTGACCAGGCTTTAGAAGG+TGG 0.532307 1_3:+1183249 Msa0095810:CDS
AATTGCTCATCTCATCCATC+GGG 0.532594 1_3:+1183134 Msa0095810:CDS
AAACATCAACTTTCAGGAGC+TGG 0.534626 1_3:+1183281 Msa0095810:CDS
TTTCATGCTGATCCTCACCC+GGG 0.534686 1_3:+1181795 Msa0095810:CDS
ACCAGGCTTTAGAAGGTGGA+GGG 0.538065 1_3:+1183253 Msa0095810:CDS
GATTCCGCGGTAGATGAGTT+GGG 0.538602 1_3:-1176378 None:intergenic
GTGGGATGTGGTTAACAAGA+AGG 0.539335 1_3:+1177481 Msa0095810:CDS
GAGAATTGGTGATGTTTCGA+AGG 0.539608 1_3:+1176665 Msa0095810:intron
GCTACCGGCGGCAATGGGAG+AGG 0.540075 1_3:-1179170 None:intergenic
AAACTTGGTTTCATCCCAGA+TGG 0.540981 1_3:+1183186 Msa0095810:CDS
GCCACATCATCTGCAAATGA+AGG 0.542980 1_3:-1179085 None:intergenic
GAATGGGACGAGCGGAGTAA+AGG 0.543025 1_3:-1176404 None:intergenic
AAGGGAGTATGGCTGAGCTT+GGG 0.543384 1_3:+1184219 Msa0095810:CDS
GTATTGGACTCACCTGTGGC+AGG 0.546086 1_3:-1179728 None:intergenic
TTATCCTCTTCAGTTATGGT+GGG 0.547564 1_3:-1185272 None:intergenic
CCGCCTGCCAAACCTGTCAA+CGG 0.550645 1_3:+1176542 Msa0095810:CDS
TGGTTGGGTTGGTTGACGAG+TGG 0.551378 1_3:+1179625 Msa0095810:CDS
TCTTCATCATTTCGGCGAAG+CGG 0.553476 1_3:-1179701 None:intergenic
ATATGCAGCATCTCTCGGAC+AGG 0.554501 1_3:+1179298 Msa0095810:intron
AAGTAGTGAATTTCTACCAT+TGG 0.554621 1_3:+1177349 Msa0095810:CDS
GAACCGTTGACGGTAGTGAC+AGG 0.554849 1_3:-1176506 None:intergenic
CAATTGCTCATCTCATCCAT+CGG 0.555375 1_3:+1183133 Msa0095810:CDS
AATTATAAGGGCAAAGTATG+GGG 0.557155 1_3:-1183349 None:intergenic
ACAACCTCCCTCTCCGTCGC+CGG 0.558871 1_3:+1176438 Msa0095810:CDS
GGTATATAAGGGCCGCCTGA+AGG 0.559240 1_3:+1179319 Msa0095810:CDS
CAGAGCAAAGAAAGCAATGT+CGG 0.560609 1_3:+1180966 Msa0095810:CDS
GGGCATTGATGCTGTGACAA+GGG 0.561217 1_3:+1185148 Msa0095810:CDS
ACCGCAGCCAGTGGAAACAC+GGG 0.564302 1_3:+1184301 Msa0095810:CDS
GGTTAACAAGAAGGTTAAAG+AGG 0.566410 1_3:+1177490 Msa0095810:CDS
ATGCGAGTTGCAACGGAGCG+AGG 0.567245 1_3:-1177413 None:intergenic
CTGCACAATGCGAGTTGCAA+CGG 0.568797 1_3:-1177420 None:intergenic
CGGATCATATTCCCCGGGTG+AGG 0.570070 1_3:-1181807 None:intergenic
TAATGATTCGCTCTTTGCTG+AGG 0.570101 1_3:+1176767 Msa0095810:CDS
ACAGCTGCCAAAAGTGGAGG+TGG 0.572452 1_3:+1184185 Msa0095810:CDS
AACGCCGGCGACGGAGAGGG+AGG 0.573158 1_3:-1176442 None:intergenic
AAGAGGAACTTGGTCAGCCA+TGG 0.574058 1_3:+1179122 Msa0095810:CDS
GAAACATATGCAGCATCTCT+CGG 0.574141 1_3:+1179293 Msa0095810:intron
CCTTATAATTAGGGCTATCG+GGG 0.576502 1_3:+1183362 Msa0095810:CDS
GAACAATGTCCAGAAAGTGC+TGG 0.577732 1_3:+1185304 Msa0095810:CDS
AGCCTATCCATATATTGCAC+AGG 0.579392 1_3:+1183437 Msa0095810:CDS
TGCCAAAAGTGGAGGTGGAG+AGG 0.579882 1_3:+1184190 Msa0095810:CDS
TAGAACGCCGGCGACGGAGA+GGG 0.580222 1_3:-1176445 None:intergenic
GGAGTGCGGATCATATTCCC+CGG 0.581565 1_3:-1181813 None:intergenic
CCGTTGACAGGTTTGGCAGG+CGG 0.583407 1_3:-1176542 None:intergenic
TACGGTTAGAACGCCGGCGA+CGG 0.585185 1_3:-1176451 None:intergenic
CTTACAACAGAATGGATTGA+CGG 0.585861 1_3:+1180930 Msa0095810:CDS
TATACCCACCATAACTGAAG+AGG 0.586389 1_3:+1185268 Msa0095810:CDS
ATTACAGCTGCCAAAAGTGG+AGG 0.587817 1_3:+1184182 Msa0095810:CDS
GATCTAAATTGACTCCATCT+GGG 0.588365 1_3:-1183200 None:intergenic
GTAAAGCACTCCTTAGCCGA+GGG 0.589316 1_3:-1184082 None:intergenic
GCTCCTGTCACTACCGTCAA+CGG 0.591944 1_3:+1176503 Msa0095810:CDS
GGCTTAAAGCGTCCAATGGT+AGG 0.593364 1_3:-1185236 None:intergenic
CCAGGCTTTAGAAGGTGGAG+GGG 0.593525 1_3:+1183254 Msa0095810:CDS
AGCACTTTAGCAGAGATGCC+CGG 0.594680 1_3:-1185561 None:intergenic
ATGGTGGGTATAAGAGCTGC+GGG 0.595967 1_3:-1185257 None:intergenic
GATTGACTGCAGATTGTCAA+GGG 0.597608 1_3:+1185128 Msa0095810:intron
AGGGCATTGATGCTGTGACA+AGG 0.597768 1_3:+1185147 Msa0095810:CDS
GCTATAATGATTAATGAACA+AGG 0.600527 1_3:-1185755 None:intergenic
GGCTATGGCTCTAATTGAAG+AGG 0.600972 1_3:+1179105 Msa0095810:CDS
TATCCTAAAAGGATAATCAA+AGG 0.601605 1_3:-1183325 None:intergenic
CCGGCAAGAGATATTCTGAC+CGG 0.601734 1_3:-1184253 None:intergenic
TCAACCTCTCCCATTGCCGC+CGG 0.601960 1_3:+1179166 Msa0095810:CDS
ATCTCAACAACCGCAGCCAG+TGG 0.604477 1_3:+1184292 Msa0095810:CDS
GGCGGTGGGAATGGGACGAG+CGG 0.606626 1_3:-1176412 None:intergenic
CGGAGATACGGTTAGAACGC+CGG 0.607587 1_3:-1176457 None:intergenic
GGAGAGGGAGGTTGTTGTGG+CGG 0.608879 1_3:-1176430 None:intergenic
TACCTGTGCAATATATGGAT+AGG 0.609388 1_3:-1183439 None:intergenic
TAACCAGAATGAGGTTGCCA+GGG 0.609399 1_3:+1178448 Msa0095810:intron
TGTTCAGCTACGTCTTGTTG+AGG 0.610684 1_3:+1176794 Msa0095810:CDS
TGGATAGGCTTCATCAACAA+TGG 0.610971 1_3:-1183424 None:intergenic
TGCGGGCTTAAAGCGTCCAA+TGG 0.612041 1_3:-1185240 None:intergenic
CTATGGCTGGATAATCCCGA+TGG 0.613934 1_3:-1183149 None:intergenic
GCTAGTATTACTGCATATTG+GGG 0.615592 1_3:+1177383 Msa0095810:CDS
CAGTTATTATCTGTTGCTGG+AGG 0.617050 1_3:+1177440 Msa0095810:CDS
TGATTGACTGCAGATTGTCA+AGG 0.617529 1_3:+1185127 Msa0095810:intron
TATCTTGCCAGTGCTTGCAA+AGG 0.619857 1_3:+1183224 Msa0095810:CDS
GAGTTAGACTATGTGAATGA+AGG 0.620549 1_3:+1179666 Msa0095810:CDS
TTTAGGATCGGTGGCGACAG+CGG 0.620973 1_3:-1176477 None:intergenic
AGGAGCAGGTTTAGGATCGG+TGG 0.621321 1_3:-1176486 None:intergenic
GACAGGAGCAGGTTTAGGAT+CGG 0.623701 1_3:-1176489 None:intergenic
GTCCAGCATACATAAAACTT+GGG 0.627157 1_3:+1178504 Msa0095810:CDS
CAAATATACACAATTGTGGG+TGG 0.628614 1_3:-1185678 None:intergenic
TATGGTGGGTATAAGAGCTG+CGG 0.631457 1_3:-1185258 None:intergenic
ACCTGTCAACGGTGTCTCTG+GGG 0.632413 1_3:+1176553 Msa0095810:CDS
CTTACAGCAAGTATACATCA+AGG 0.633014 1_3:+1180901 Msa0095810:CDS
CGTAAAGCACTCCTTAGCCG+AGG 0.633199 1_3:-1184083 None:intergenic
GTTGTTGAGATGTTACAGAC+TGG 0.636049 1_3:-1184280 None:intergenic
AGAAGTTCTTGGATAATCTG+AGG 0.636314 1_3:-1185528 None:intergenic
AGTCTTATGAGAGGTCTTCG+TGG 0.637623 1_3:+1176735 Msa0095810:CDS
GAGTAAACAGCATTCCACAA+TGG 0.640499 1_3:+1176343 Msa0095810:exon
GAGTGCGGATCATATTCCCC+GGG 0.640776 1_3:-1181812 None:intergenic
TTAGAACGCCGGCGACGGAG+AGG 0.642104 1_3:-1176446 None:intergenic
GATGAAGAAAGACCTGCCAC+AGG 0.643598 1_3:+1179716 Msa0095810:CDS
CTATAATGATTAATGAACAA+GGG 0.644603 1_3:-1185754 None:intergenic
GGATGATGCTGTATCCATTG+TGG 0.645105 1_3:-1176357 None:intergenic
CTAGCTGGATCATACACCAA+TGG 0.649269 1_3:-1177365 None:intergenic
TCTTGACGGATGAATCCCCT+CGG 0.651670 1_3:+1184066 Msa0095810:CDS
AGCTGTAATAAAATTCTCGA+AGG 0.654599 1_3:-1184168 None:intergenic
CAGCAAGTATACATCAAGGA+GGG 0.655370 1_3:+1180905 Msa0095810:CDS
ATTATAAGGGCAAAGTATGG+GGG 0.655388 1_3:-1183348 None:intergenic
GGGCCGCCTGAAGGAAAATG+GGG 0.676507 1_3:+1179328 Msa0095810:CDS
TTCATGCTGATCCTCACCCG+GGG 0.678599 1_3:+1181796 Msa0095810:CDS
GGAGTAAAGGATCGATTCCG+CGG 0.682638 1_3:-1176391 None:intergenic
CAATTGGCAAGTCTTATGAG+AGG 0.695083 1_3:+1176726 Msa0095810:CDS
ACAGCAAGTATACATCAAGG+AGG 0.696808 1_3:+1180904 Msa0095810:CDS
TCATCCCAACTCATCTACCG+CGG 0.706405 1_3:+1176374 Msa0095810:CDS
TAAAGCACTCCTTAGCCGAG+GGG 0.715422 1_3:-1184081 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATAATTATTATAA+TGG - chr1_3:1180821-1180840 None:intergenic 0.0%
!!! AATATTTATTCAATGAATTT+TGG - chr1_3:1177147-1177166 None:intergenic 10.0%
!! ATAAATATTTAGATATTAGT+CGG + chr1_3:1177959-1177978 Msa0095810:intron 10.0%
!! CAAACTAATAAATATAATTA+AGG + chr1_3:1180388-1180407 Msa0095810:intron 10.0%
!!! TGGTTTATTTTTAATTTTTT+TGG + chr1_3:1180506-1180525 Msa0095810:intron 10.0%
!!! TTAATTTTTTTTTTTAGTGT+AGG + chr1_3:1181677-1181696 Msa0095810:intron 10.0%
!!! TAATTTTTTTTTTTAGTGTA+GGG + chr1_3:1181678-1181697 Msa0095810:intron 10.0%
!!! GATTTTTTATTTATGAAAAT+AGG + chr1_3:1182475-1182494 Msa0095810:intron 10.0%
!!! ATCCATATTTTTTAATTTTA+CGG - chr1_3:1182652-1182671 None:intergenic 10.0%
!! AAAAAATTATAACTATGATA+TGG - chr1_3:1182852-1182871 None:intergenic 10.0%
!! GAAAAAAATAGAAATATCAT+AGG - chr1_3:1177198-1177217 None:intergenic 15.0%
!!! TTTTTAATTTCTTGCATATT+TGG + chr1_3:1178065-1178084 Msa0095810:intron 15.0%
!! ATAAGTTTCAATTATCTAAA+AGG - chr1_3:1178383-1178402 None:intergenic 15.0%
!! AAGAAAGTAATATATCAAAA+TGG - chr1_3:1179204-1179223 None:intergenic 15.0%
!!! AATGTTAAGTTTTTCATAAT+AGG + chr1_3:1180153-1180172 Msa0095810:intron 15.0%
!!! TATTAGTTTGTTTCTAAAAT+AGG - chr1_3:1180378-1180397 None:intergenic 15.0%
!! ACTAATAAATATAATTAAGG+AGG + chr1_3:1180391-1180410 Msa0095810:intron 15.0%
!!! AATAATAAATTACCTGTTTT+AGG - chr1_3:1181022-1181041 None:intergenic 15.0%
!!! AAAATAATTTTGACAAATTC+AGG + chr1_3:1181619-1181638 Msa0095810:intron 15.0%
!!! AAATAATTTTGACAAATTCA+GGG + chr1_3:1181620-1181639 Msa0095810:intron 15.0%
!! GTTTATAAAGAATTTACTTA+AGG - chr1_3:1181722-1181741 None:intergenic 15.0%
!! TACCGTAAAATTAAAAAATA+TGG + chr1_3:1182647-1182666 Msa0095810:intron 15.0%
!! TATACATTGTAAAACAAAAT+TGG + chr1_3:1182704-1182723 Msa0095810:intron 15.0%
!! AAAATGAAGTTAAAAGAAAA+CGG - chr1_3:1182807-1182826 None:intergenic 15.0%
!!! AAATGGTTACTATTAAATTT+TGG + chr1_3:1183818-1183837 Msa0095810:intron 15.0%
!! AGTATAATAACTAAATTACT+TGG - chr1_3:1184446-1184465 None:intergenic 15.0%
!! TAGTATAAAAATATGATTGT+AGG - chr1_3:1184585-1184604 None:intergenic 15.0%
!!! GATAAATTTGTTTTGATTTG+AGG + chr1_3:1177839-1177858 Msa0095810:intron 20.0%
!! CGATATAGATTCATTTAAAA+AGG - chr1_3:1178662-1178681 None:intergenic 20.0%
!!! AAGTTATTAACTTTTTTCTC+TGG - chr1_3:1178708-1178727 None:intergenic 20.0%
!! GTTAATAACTTGATATTAGT+TGG + chr1_3:1178717-1178736 Msa0095810:intron 20.0%
!!! TGCTTTTTACCTAATTTTTT+AGG + chr1_3:1179590-1179609 Msa0095810:intron 20.0%
!!! CATAAGAAATAAGAAAGTAT+TGG - chr1_3:1179747-1179766 None:intergenic 20.0%
!! ATTATAAAAATTGTCATGAG+AGG + chr1_3:1180829-1180848 Msa0095810:intron 20.0%
!! ATTTCAATTTATACAGCTTA+GGG + chr1_3:1181115-1181134 Msa0095810:intron 20.0%
!!! TACATAAATTTTTGAAACAC+AGG - chr1_3:1181210-1181229 None:intergenic 20.0%
!! TGTGTTTCAAAAATTTATGT+AGG + chr1_3:1181209-1181228 Msa0095810:intron 20.0%
!! AATACTAATGATTATACAAC+AGG - chr1_3:1181249-1181268 None:intergenic 20.0%
!! ATAATCTATCTAAATTACCA+GGG - chr1_3:1181379-1181398 None:intergenic 20.0%
!! TATAATCTATCTAAATTACC+AGG - chr1_3:1181380-1181399 None:intergenic 20.0%
!! AAATGTCTCTAAATAAGTAA+TGG - chr1_3:1181410-1181429 None:intergenic 20.0%
!!! AATTTCATAATGTCTTATTG+AGG - chr1_3:1181975-1181994 None:intergenic 20.0%
!!! TTCTGGTATTTAAAATCTAA+TGG - chr1_3:1182263-1182282 None:intergenic 20.0%
!!! AATTTCTTTTTTACTTGCAA+AGG - chr1_3:1182452-1182471 None:intergenic 20.0%
!!! TTAATTTTACGGTAAATATC+TGG - chr1_3:1182641-1182660 None:intergenic 20.0%
!! TAAAAGAACTTAAACATTAG+TGG - chr1_3:1183012-1183031 None:intergenic 20.0%
!! CATCATTTATCATAATGATT+AGG - chr1_3:1183044-1183063 None:intergenic 20.0%
!! CTAATCATTATGATAAATGA+TGG + chr1_3:1183042-1183061 Msa0095810:intron 20.0%
!! TTCATCAATTTCAAAAACAT+TGG - chr1_3:1183592-1183611 None:intergenic 20.0%
!!! TGATGTAGATATAACAATTT+TGG + chr1_3:1183779-1183798 Msa0095810:intron 20.0%
!!! TTTTATACTAATTACAACAG+AGG + chr1_3:1184595-1184614 Msa0095810:intron 20.0%
!!! AAAGTCGTATATAATTTTTG+TGG + chr1_3:1184789-1184808 Msa0095810:intron 20.0%
!! CTAAAATTGAATAAATCAGT+TGG + chr1_3:1184841-1184860 Msa0095810:intron 20.0%
!!! TGATTTATTTTAGCTTAACA+AGG + chr1_3:1185451-1185470 Msa0095810:intron 20.0%
!! TTATTTATCTATTTGTCTGT+GGG + chr1_3:1185484-1185503 Msa0095810:intron 20.0%
!! TATTTATATATACTGGTATG+TGG - chr1_3:1185719-1185738 None:intergenic 20.0%
!! CTATAATGATTAATGAACAA+GGG - chr1_3:1185757-1185776 None:intergenic 20.0%
! TTTATTTGCATTCAGAGAAT+TGG + chr1_3:1176651-1176670 Msa0095810:intron 25.0%
!!! TAAGTTTTGTGAGTTTGTTT+GGG - chr1_3:1177084-1177103 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGTTTGTT+TGG - chr1_3:1177085-1177104 None:intergenic 25.0%
!! TTCAATGAATTTTGGATTGA+GGG - chr1_3:1177139-1177158 None:intergenic 25.0%
!! ATTCAATGAATTTTGGATTG+AGG - chr1_3:1177140-1177159 None:intergenic 25.0%
! GTATATTCAAGCATCATAAA+TGG - chr1_3:1177240-1177259 None:intergenic 25.0%
!!! GGATTTTATGTTATTTGATG+TGG + chr1_3:1177294-1177313 Msa0095810:intron 25.0%
!!! GTGTATTTTTTCAATTGTGT+AGG + chr1_3:1177319-1177338 Msa0095810:intron 25.0%
! TCTTGTCGATAACTAATATT+AGG + chr1_3:1177614-1177633 Msa0095810:intron 25.0%
! AAACTAAAGATAGTTTCTGA+CGG - chr1_3:1177697-1177716 None:intergenic 25.0%
!! AGAAACTATCTTTAGTTTCT+AGG + chr1_3:1177699-1177718 Msa0095810:intron 25.0%
!! TTCTTTTGTCTATGACTTAA+AGG - chr1_3:1177803-1177822 None:intergenic 25.0%
! TATCTAAAAGGATTGATACA+GGG - chr1_3:1178371-1178390 None:intergenic 25.0%
! TTATCTAAAAGGATTGATAC+AGG - chr1_3:1178372-1178391 None:intergenic 25.0%
!! ATATTTTCATAACCAGAATG+AGG + chr1_3:1178439-1178458 Msa0095810:intron 25.0%
! TTCATTTAAAAAGGACACAA+TGG - chr1_3:1178653-1178672 None:intergenic 25.0%
! AATCTATATCGTCATACATA+GGG + chr1_3:1178671-1178690 Msa0095810:intron 25.0%
!!! GTTTCATTATTCTGAAATGA+AGG - chr1_3:1178799-1178818 None:intergenic 25.0%
! AATAATGAAACACAATTGTC+TGG + chr1_3:1178808-1178827 Msa0095810:intron 25.0%
! AGTAATATATCAAAATGGTC+TGG - chr1_3:1179199-1179218 None:intergenic 25.0%
!! TTTTGAATTAACTAACCAAC+AGG + chr1_3:1179255-1179274 Msa0095810:intron 25.0%
!!! CCATTGATTTATTCATTATC+CGG + chr1_3:1179399-1179418 Msa0095810:CDS 25.0%
! AAATTAGGTAAAAAGCAGTT+GGG - chr1_3:1179587-1179606 None:intergenic 25.0%
! AAAATTAGGTAAAAAGCAGT+TGG - chr1_3:1179588-1179607 None:intergenic 25.0%
! AACGATAAAATACTCTATCA+AGG + chr1_3:1179876-1179895 Msa0095810:intron 25.0%
! TATAACTTCGAAATACATAG+AGG - chr1_3:1179944-1179963 None:intergenic 25.0%
! GTTATCCTTTGTATATATAG+AGG + chr1_3:1180281-1180300 Msa0095810:intron 25.0%
! TGTAACCTCTATATATACAA+AGG - chr1_3:1180289-1180308 None:intergenic 25.0%
!! TTTGTTGTAATTACTTGTAC+AGG - chr1_3:1180313-1180332 None:intergenic 25.0%
! ATATGTATTGTGTAGAGAAA+CGG - chr1_3:1180750-1180769 None:intergenic 25.0%
! AGATGATTAACATTAAACCA+TGG - chr1_3:1180786-1180805 None:intergenic 25.0%
!!! ATTATTTTAATGCTTTCAGC+TGG + chr1_3:1181036-1181055 Msa0095810:intron 25.0%
! CATTTCAATTTATACAGCTT+AGG + chr1_3:1181114-1181133 Msa0095810:intron 25.0%
! AAAAGTTAACAATCCATTGT+CGG - chr1_3:1181301-1181320 None:intergenic 25.0%
!! CAAGAAATATTATCTAGTTC+AGG - chr1_3:1182064-1182083 None:intergenic 25.0%
! CTGAACTAGATAATATTTCT+TGG + chr1_3:1182062-1182081 Msa0095810:intron 25.0%
! GAATGTTATAATGTTTGAAC+TGG + chr1_3:1182291-1182310 Msa0095810:intron 25.0%
! CTTGAAAGATTCTTTGTATA+TGG + chr1_3:1182361-1182380 Msa0095810:intron 25.0%
! TTCTTATTCTTCATAAAGCA+TGG + chr1_3:1182396-1182415 Msa0095810:intron 25.0%
! TCTTATTCTTCATAAAGCAT+GGG + chr1_3:1182397-1182416 Msa0095810:intron 25.0%
!! AAAACAAAATTGGTTTCAGT+AGG + chr1_3:1182714-1182733 Msa0095810:intron 25.0%
!! TTTTAAATGAACCACAAATC+AGG - chr1_3:1182756-1182775 None:intergenic 25.0%
!!! ATTTTTTCTTTGCTTTTGCA+TGG + chr1_3:1182865-1182884 Msa0095810:intron 25.0%
! ACACTTGTCTTAATGTTTAA+AGG - chr1_3:1182904-1182923 None:intergenic 25.0%
!!! TGTTTTGTTATTTGCAATTG+TGG + chr1_3:1182923-1182942 Msa0095810:intron 25.0%
! TATCATAATGATTAGGATAG+TGG - chr1_3:1183037-1183056 None:intergenic 25.0%
!! TTACCTTTGATTATCCTTTT+AGG + chr1_3:1183322-1183341 Msa0095810:CDS 25.0%
! TATCCTAAAAGGATAATCAA+AGG - chr1_3:1183328-1183347 None:intergenic 25.0%
! TAATTATAAGGGCAAAGTAT+GGG - chr1_3:1183353-1183372 None:intergenic 25.0%
! ATACTTTGCCCTTATAATTA+GGG + chr1_3:1183353-1183372 Msa0095810:CDS 25.0%
! AATTATACCTGTGCAATATA+TGG - chr1_3:1183447-1183466 None:intergenic 25.0%
! TACAGAAAAAATTAAGCCAA+TGG + chr1_3:1183675-1183694 Msa0095810:intron 25.0%
! ACAGAAAAAATTAAGCCAAT+GGG + chr1_3:1183676-1183695 Msa0095810:intron 25.0%
!! TAGATATAACAATTTTGGAC+AGG + chr1_3:1183784-1183803 Msa0095810:intron 25.0%
!!! TAGTCTTAGACTTAGTTTTA+TGG + chr1_3:1183848-1183867 Msa0095810:intron 25.0%
!! AATTTTCCGATGAAGAATTT+TGG - chr1_3:1183880-1183899 None:intergenic 25.0%
! TTCACAACTAATATTCATGA+CGG + chr1_3:1183900-1183919 Msa0095810:intron 25.0%
! CTTTACGTTACACTATATAT+GGG + chr1_3:1184099-1184118 Msa0095810:CDS 25.0%
!!! TTTTTTCCGAGAATTTCTTT+TGG + chr1_3:1184358-1184377 Msa0095810:CDS 25.0%
! CAATAAAGTAAAAGAAGTCA+AGG - chr1_3:1184502-1184521 None:intergenic 25.0%
!! ATTGTCGAAGTTTTCAAATT+TGG + chr1_3:1184559-1184578 Msa0095810:intron 25.0%
!! GTTGGTAAAATTAACTGAAA+AGG + chr1_3:1184859-1184878 Msa0095810:intron 25.0%
!! TAACTGAAAAGGTTTGTTTA+TGG + chr1_3:1184870-1184889 Msa0095810:intron 25.0%
! CTTATTTATCTATTTGTCTG+TGG + chr1_3:1185483-1185502 Msa0095810:intron 25.0%
! TGTCAAATATACACAATTGT+GGG - chr1_3:1185684-1185703 None:intergenic 25.0%
! ATTGTGTATATTTGACAGAA+TGG + chr1_3:1185687-1185706 Msa0095810:three_prime_UTR 25.0%
! GCTATAATGATTAATGAACA+AGG - chr1_3:1185758-1185777 None:intergenic 25.0%
AATGGAAGAAGATGAACAAT+TGG + chr1_3:1176710-1176729 Msa0095810:CDS 30.0%
!! AATATACATAAGCATTGAGC+TGG + chr1_3:1177253-1177272 Msa0095810:intron 30.0%
AAGTAGTGAATTTCTACCAT+TGG + chr1_3:1177349-1177368 Msa0095810:CDS 30.0%
AGCTAGTATTACTGCATATT+GGG + chr1_3:1177382-1177401 Msa0095810:CDS 30.0%
!! ATATTAGGCGTGTTGATTTA+AGG + chr1_3:1177629-1177648 Msa0095810:intron 30.0%
AACTAAAGATAGTTTCTGAC+GGG - chr1_3:1177696-1177715 None:intergenic 30.0%
! ATTTGAGGTGAATGATAGAT+CGG + chr1_3:1177854-1177873 Msa0095810:intron 30.0%
ATATCACAAATAAGCAACCA+CGG - chr1_3:1178423-1178442 None:intergenic 30.0%
ACACAATGGCATATATAGAA+GGG - chr1_3:1178639-1178658 None:intergenic 30.0%
GAATCTATATCGTCATACAT+AGG + chr1_3:1178670-1178689 Msa0095810:intron 30.0%
!!! TTCTGAGGTTTTTTTGTTCT+TGG + chr1_3:1179026-1179045 Msa0095810:intron 30.0%
CCGGATAATGAATAAATCAA+TGG - chr1_3:1179402-1179421 None:intergenic 30.0%
CAATGGAGACCTAAAAAATT+AGG - chr1_3:1179602-1179621 None:intergenic 30.0%
TATGTGAATGAAGGTGAAAA+TGG + chr1_3:1179675-1179694 Msa0095810:CDS 30.0%
TCTTTATCTTCCTAGGTATT+CGG - chr1_3:1179857-1179876 None:intergenic 30.0%
TTATCGTTCTTTATCTTCCT+AGG - chr1_3:1179864-1179883 None:intergenic 30.0%
TCTTCACACAACACATTAAT+CGG + chr1_3:1179915-1179934 Msa0095810:intron 30.0%
CAGTTAATTAGTTAGGACTT+AGG - chr1_3:1179971-1179990 None:intergenic 30.0%
GTTAGAGCAGTTAATTAGTT+AGG - chr1_3:1179978-1179997 None:intergenic 30.0%
!! AGGATCATATTGCTTTTATG+AGG + chr1_3:1180173-1180192 Msa0095810:intron 30.0%
!! GGATCATATTGCTTTTATGA+GGG + chr1_3:1180174-1180193 Msa0095810:intron 30.0%
ATGATGAGACTAAGAACATT+AGG + chr1_3:1180437-1180456 Msa0095810:intron 30.0%
!! AATTTGTTGCAACTGATTGA+TGG + chr1_3:1180486-1180505 Msa0095810:intron 30.0%
CTAGTGAATGATTGTATGTA+TGG + chr1_3:1180552-1180571 Msa0095810:intron 30.0%
TATAGAGAGAGAAATAGAGT+GGG - chr1_3:1180692-1180711 None:intergenic 30.0%
ATATAGAGAGAGAAATAGAG+TGG - chr1_3:1180693-1180712 None:intergenic 30.0%
TTAAACCATGGTAGTCAAAT+CGG - chr1_3:1180774-1180793 None:intergenic 30.0%
TCTTATCACAGTTCAATTTC+AGG + chr1_3:1180863-1180882 Msa0095810:intron 30.0%
!!! AAAAGTGTTTTTACCGACAA+TGG + chr1_3:1181285-1181304 Msa0095810:intron 30.0%
!!! GACAATGGATTGTTAACTTT+TGG + chr1_3:1181300-1181319 Msa0095810:intron 30.0%
ATTAAAGATGTCAAGGATAG+TGG - chr1_3:1181347-1181366 None:intergenic 30.0%
GTGAAACATTAAAGATGTCA+AGG - chr1_3:1181354-1181373 None:intergenic 30.0%
TGATATTGTTTAGACTGGAA+AGG + chr1_3:1181496-1181515 Msa0095810:intron 30.0%
!!! TACAATTGTTTTGGGTTCAA+TGG + chr1_3:1181649-1181668 Msa0095810:intron 30.0%
!!! ACAATTGTTTTGGGTTCAAT+GGG + chr1_3:1181650-1181669 Msa0095810:intron 30.0%
AAACTTGCAATACTTGACTT+TGG + chr1_3:1181843-1181862 Msa0095810:CDS 30.0%
ATAACATTCATTGCAAGTTC+TGG - chr1_3:1182280-1182299 None:intergenic 30.0%
TTTGTATATGGTATAAGCGT+AGG + chr1_3:1182373-1182392 Msa0095810:intron 30.0%
! AAATTGGTTTCAGTAGGAAA+TGG + chr1_3:1182720-1182739 Msa0095810:intron 30.0%
! GTGAAATTTAACCTGATTTG+TGG + chr1_3:1182742-1182761 Msa0095810:intron 30.0%
!!! AACTTCATTTTTTCTCCTTC+AGG + chr1_3:1182816-1182835 Msa0095810:intron 30.0%
TTTAACGAAGTCTTTCACTA+TGG - chr1_3:1183169-1183188 None:intergenic 30.0%
AATTATAAGGGCAAAGTATG+GGG - chr1_3:1183352-1183371 None:intergenic 30.0%
CTAATTATAAGGGCAAAGTA+TGG - chr1_3:1183354-1183373 None:intergenic 30.0%
CATACTTTGCCCTTATAATT+AGG + chr1_3:1183352-1183371 Msa0095810:CDS 30.0%
! GATGTCTAAGTTTTACTTGA+AGG + chr1_3:1183554-1183573 Msa0095810:intron 30.0%
!!! AGACAGAAATTTTTTCCCAT+TGG - chr1_3:1183694-1183713 None:intergenic 30.0%
AAAAATTTCTGTCTAGTGTC+TGG + chr1_3:1183700-1183719 Msa0095810:intron 30.0%
TCTAGTGTCTGGAAATAAAA+GGG + chr1_3:1183711-1183730 Msa0095810:intron 30.0%
AGTACACCAAAATTCTTCAT+CGG + chr1_3:1183871-1183890 Msa0095810:intron 30.0%
!!! ATATTCATGACGGATTTTGA+TGG + chr1_3:1183910-1183929 Msa0095810:intron 30.0%
GCTTTACGTTACACTATATA+TGG + chr1_3:1184098-1184117 Msa0095810:CDS 30.0%
TACACTATATATGGGAAATC+TGG + chr1_3:1184107-1184126 Msa0095810:CDS 30.0%
AGCTGTAATAAAATTCTCGA+AGG - chr1_3:1184171-1184190 None:intergenic 30.0%
GGAGTTATTGTACTTTCATA+TGG - chr1_3:1184473-1184492 None:intergenic 30.0%
AGTTAAATCTGAACAAGGTA+TGG + chr1_3:1184698-1184717 Msa0095810:intron 30.0%
! TTTTGTGGTAAAATTCCACA+TGG + chr1_3:1184804-1184823 Msa0095810:intron 30.0%
ATGACTCCAAAAACAGTTTA+TGG - chr1_3:1184956-1184975 None:intergenic 30.0%
GTAAGAATTATGTCCTTACT+AGG + chr1_3:1185179-1185198 Msa0095810:CDS 30.0%
AACTTTATCCTCTTCAGTTA+TGG - chr1_3:1185279-1185298 None:intergenic 30.0%
TTCTTAGCAGATTATCTTCT+CGG + chr1_3:1185592-1185611 Msa0095810:CDS 30.0%
CTGTCAAATATACACAATTG+TGG - chr1_3:1185685-1185704 None:intergenic 30.0%
GATTAATGAACAAGGGTAAA+TGG - chr1_3:1185750-1185769 None:intergenic 30.0%
ATAAGCCAAATCAATTATGC+TGG + chr1_3:1185820-1185839 Msa0095810:three_prime_UTR 30.0%
AATAGCCAGCATAATTGATT+TGG - chr1_3:1185828-1185847 None:intergenic 30.0%
CACGTTGAAATCAGTGAATT+CGG - chr1_3:1176627-1176646 None:intergenic 35.0%
!!! TGGTGAGCTACTTTTTTTCT+TGG + chr1_3:1177273-1177292 Msa0095810:intron 35.0%
CAATATGCAGTAATACTAGC+TGG - chr1_3:1177383-1177402 None:intergenic 35.0%
CAGCTAGTATTACTGCATAT+TGG + chr1_3:1177381-1177400 Msa0095810:CDS 35.0%
GCTAGTATTACTGCATATTG+GGG + chr1_3:1177383-1177402 Msa0095810:CDS 35.0%
GGTTAACAAGAAGGTTAAAG+AGG + chr1_3:1177490-1177509 Msa0095810:CDS 35.0%
AGAGAAGAAACAGAAAGCAA+GGG - chr1_3:1177597-1177616 None:intergenic 35.0%
AAGAGAAGAAACAGAAAGCA+AGG - chr1_3:1177598-1177617 None:intergenic 35.0%
! TTTGAGGTGAATGATAGATC+GGG + chr1_3:1177855-1177874 Msa0095810:intron 35.0%
TAGAAGTTTCCAGTTACGTA+TGG + chr1_3:1177906-1177925 Msa0095810:intron 35.0%
TGTTATCATGTGTGTTGCAT+GGG - chr1_3:1177989-1178008 None:intergenic 35.0%
ATGTTATCATGTGTGTTGCA+TGG - chr1_3:1177990-1178009 None:intergenic 35.0%
TTTGCACAACAACATTGTGT+TGG + chr1_3:1178172-1178191 Msa0095810:intron 35.0%
GTTTACAAAACCAGCTTGTA+AGG - chr1_3:1178327-1178346 None:intergenic 35.0%
TTGTGCTATATATTTCACCG+TGG + chr1_3:1178403-1178422 Msa0095810:intron 35.0%
ACGTGAAATTGTGACATCTT+TGG + chr1_3:1178481-1178500 Msa0095810:CDS 35.0%
CGTGAAATTGTGACATCTTT+GGG + chr1_3:1178482-1178501 Msa0095810:CDS 35.0%
GTCCAGCATACATAAAACTT+GGG + chr1_3:1178504-1178523 Msa0095810:CDS 35.0%
GACACAATGGCATATATAGA+AGG - chr1_3:1178640-1178659 None:intergenic 35.0%
GACAGCAATTCTTGTAAGAA+GGG - chr1_3:1178927-1178946 None:intergenic 35.0%
AGACAGCAATTCTTGTAAGA+AGG - chr1_3:1178928-1178947 None:intergenic 35.0%
! AGAATTGCTGTCTGATGTTT+TGG + chr1_3:1178935-1178954 Msa0095810:intron 35.0%
!!! TGAGGTTTTTTTGTTCTTGG+TGG + chr1_3:1179029-1179048 Msa0095810:intron 35.0%
!!! GAGGTTTTTTTGTTCTTGGT+GGG + chr1_3:1179030-1179049 Msa0095810:intron 35.0%
!!! AGGTTTTTTTGTTCTTGGTG+GGG + chr1_3:1179031-1179050 Msa0095810:intron 35.0%
! GAAGGAACCTTCACATTTTA+TGG - chr1_3:1179070-1179089 None:intergenic 35.0%
! TCAGAATAGACATTTTGCCA+TGG - chr1_3:1179142-1179161 None:intergenic 35.0%
ACAAGAAAACAGATACCTGT+TGG - chr1_3:1179273-1179292 None:intergenic 35.0%
TTATTCATTATCCGGAACCT+TGG + chr1_3:1179407-1179426 Msa0095810:CDS 35.0%
!! ACAAGAATTTAACTTGCCTG+AGG - chr1_3:1179452-1179471 None:intergenic 35.0%
GAGTTAGACTATGTGAATGA+AGG + chr1_3:1179666-1179685 Msa0095810:CDS 35.0%
CAGGTCTTTCTTCATCATTT+CGG - chr1_3:1179712-1179731 None:intergenic 35.0%
TACTGACGTAAAACAGATAG+TGG - chr1_3:1179786-1179805 None:intergenic 35.0%
ACACTAAGCAGAAATTCTTG+TGG + chr1_3:1179809-1179828 Msa0095810:intron 35.0%
CTTTATCTTCCTAGGTATTC+GGG - chr1_3:1179856-1179875 None:intergenic 35.0%
AACTGCTCTAACAGTTTACA+TGG + chr1_3:1179986-1180005 Msa0095810:intron 35.0%
!! GATCGTCCATTTGATTTGTT+GGG + chr1_3:1180042-1180061 Msa0095810:intron 35.0%
GGAAAGAAAGTAACATCAGT+TGG - chr1_3:1180068-1180087 None:intergenic 35.0%
CCTTGACACATATCATCAAT+AGG - chr1_3:1180239-1180258 None:intergenic 35.0%
! CCTATTGATGATATGTGTCA+AGG + chr1_3:1180236-1180255 Msa0095810:intron 35.0%
! TTGATGATATGTGTCAAGGT+TGG + chr1_3:1180240-1180259 Msa0095810:intron 35.0%
GTCTCATCATATTGTGAATC+AGG - chr1_3:1180427-1180446 None:intergenic 35.0%
TAGGCTAGACTTTCATTCAA+TGG + chr1_3:1180456-1180475 Msa0095810:intron 35.0%
GAATTTGTAAAGAAAGAGCG+TGG - chr1_3:1180670-1180689 None:intergenic 35.0%
TAAACCATGGTAGTCAAATC+GGG - chr1_3:1180773-1180792 None:intergenic 35.0%
!! GTATACTTGCTGTAAGTTCT+TGG - chr1_3:1180897-1180916 None:intergenic 35.0%
CTTACAGCAAGTATACATCA+AGG + chr1_3:1180901-1180920 Msa0095810:CDS 35.0%
!! CTTACAACAGAATGGATTGA+CGG + chr1_3:1180930-1180949 Msa0095810:CDS 35.0%
GTCGGAGAATTAGTTAATGT+TGG + chr1_3:1180984-1181003 Msa0095810:CDS 35.0%
AAGATGTAGCTTAAAGCTCA+CGG - chr1_3:1181081-1181100 None:intergenic 35.0%
TCTTTAATGTTTCACTTCCC+TGG + chr1_3:1181359-1181378 Msa0095810:intron 35.0%
CTCTAAATAAGTAATGGCAG+AGG - chr1_3:1181404-1181423 None:intergenic 35.0%
!! GAGATAATTGATAGCGTATG+TGG + chr1_3:1181472-1181491 Msa0095810:intron 35.0%
GTGGATGATATTGTTTAGAC+TGG + chr1_3:1181491-1181510 Msa0095810:intron 35.0%
TTGTTTAGACTGGAAAGGAT+TGG + chr1_3:1181501-1181520 Msa0095810:intron 35.0%
TATTTGGGTCCTCTAAATTC+AGG + chr1_3:1181565-1181584 Msa0095810:intron 35.0%
ATTTGGGTCCTCTAAATTCA+GGG + chr1_3:1181566-1181585 Msa0095810:intron 35.0%
! GGCTCGATTACAATTGTTTT+GGG + chr1_3:1181641-1181660 Msa0095810:intron 35.0%
TTATTTCAGCTGCTTGATAC+TGG + chr1_3:1181768-1181787 Msa0095810:intron 35.0%
! AGTATTGCAAGTTTTCCATC+AGG - chr1_3:1181837-1181856 None:intergenic 35.0%
TTGCAATACTTGACTTTGGT+AGG + chr1_3:1181847-1181866 Msa0095810:intron 35.0%
TTGATTCAAATGTGTGCATG+AGG + chr1_3:1181909-1181928 Msa0095810:intron 35.0%
TGATTCAAATGTGTGCATGA+GGG + chr1_3:1181910-1181929 Msa0095810:intron 35.0%
!! AAGACTTCGTGTGTTTTGTT+TGG + chr1_3:1182030-1182049 Msa0095810:intron 35.0%
TGTGGCTAGATATTGTTCAT+CGG + chr1_3:1182941-1182960 Msa0095810:intron 35.0%
! ATGAAGTTGATCAAGACAAC+AGG - chr1_3:1182973-1182992 None:intergenic 35.0%
!!! TCAACTTCATTGCTTTTTCC+TGG + chr1_3:1182983-1183002 Msa0095810:intron 35.0%
!! GAAATCTTTTGTTGTACCCA+GGG + chr1_3:1183064-1183083 Msa0095810:intron 35.0%
! TCAATTTTGTAACAAGCCCT+GGG - chr1_3:1183083-1183102 None:intergenic 35.0%
! CATTCCATACTTTTGATCGT+CGG - chr1_3:1183106-1183125 None:intergenic 35.0%
GTGAAAGACTTCGTTAAACT+TGG + chr1_3:1183171-1183190 Msa0095810:CDS 35.0%
! GATCTAAATTGACTCCATCT+GGG - chr1_3:1183203-1183222 None:intergenic 35.0%
GGCAAAAAACATCAACTTTC+AGG + chr1_3:1183275-1183294 Msa0095810:CDS 35.0%
ATTATAAGGGCAAAGTATGG+GGG - chr1_3:1183351-1183370 None:intergenic 35.0%
TCATCAACAATGGCAAAATC+AGG - chr1_3:1183417-1183436 None:intergenic 35.0%
TACCTGTGCAATATATGGAT+AGG - chr1_3:1183442-1183461 None:intergenic 35.0%
ATTGCACAGGTATAATTGTC+TGG + chr1_3:1183450-1183469 Msa0095810:intron 35.0%
!! ACTGGCTTATAGCTTTAACT+TGG + chr1_3:1183516-1183535 Msa0095810:intron 35.0%
GTCTAGTGTCTGGAAATAAA+AGG + chr1_3:1183710-1183729 Msa0095810:intron 35.0%
CTAGTGTCTGGAAATAAAAG+GGG + chr1_3:1183712-1183731 Msa0095810:intron 35.0%
TAGTGTCTGGAAATAAAAGG+GGG + chr1_3:1183713-1183732 Msa0095810:intron 35.0%
TTACTGATAGAGACTCTTGA+CGG + chr1_3:1184052-1184071 Msa0095810:intron 35.0%
TTTATTACAGCTGCCAAAAG+TGG + chr1_3:1184179-1184198 Msa0095810:CDS 35.0%
ATCAGACAGCAAAAATGCTA+GGG - chr1_3:1184330-1184349 None:intergenic 35.0%
TATCAGACAGCAAAAATGCT+AGG - chr1_3:1184331-1184350 None:intergenic 35.0%
!! AGCATTTTTGCTGTCTGATA+AGG + chr1_3:1184331-1184350 Msa0095810:CDS 35.0%
!! GCATTTTTGCTGTCTGATAA+GGG + chr1_3:1184332-1184351 Msa0095810:CDS 35.0%
!! CATTTTTGCTGTCTGATAAG+GGG + chr1_3:1184333-1184352 Msa0095810:CDS 35.0%
AGCGTAGTTAAATCTGAACA+AGG + chr1_3:1184693-1184712 Msa0095810:intron 35.0%
! CAAGGTACAATGTTACTTCT+GGG + chr1_3:1184760-1184779 Msa0095810:intron 35.0%
AAACAAAACTTAAGCGCCAT+AGG - chr1_3:1184910-1184929 None:intergenic 35.0%
! TAGCCACCATAAACTGTTTT+TGG + chr1_3:1184947-1184966 Msa0095810:intron 35.0%
ACTCCAAAAACAGTTTATGG+TGG - chr1_3:1184953-1184972 None:intergenic 35.0%
TAGGTACCATACCGAAAATA+GGG - chr1_3:1185220-1185239 None:intergenic 35.0%
TTATCCTCTTCAGTTATGGT+GGG - chr1_3:1185275-1185294 None:intergenic 35.0%
TTTATCCTCTTCAGTTATGG+TGG - chr1_3:1185276-1185295 None:intergenic 35.0%
TTTATCTATTTGTCTGTGGG+TGG + chr1_3:1185487-1185506 Msa0095810:intron 35.0%
AGAAGTTCTTGGATAATCTG+AGG - chr1_3:1185531-1185550 None:intergenic 35.0%
GATAATCTGCTAAGAACATC+AGG - chr1_3:1185588-1185607 None:intergenic 35.0%
TCTTAGCAGATTATCTTCTC+GGG + chr1_3:1185593-1185612 Msa0095810:CDS 35.0%
CAAATATACACAATTGTGGG+TGG - chr1_3:1185681-1185700 None:intergenic 35.0%
GAGTAAACAGCATTCCACAA+TGG + chr1_3:1176343-1176362 Msa0095810:exon 40.0%
!! GAGAATTGGTGATGTTTCGA+AGG + chr1_3:1176665-1176684 Msa0095810:intron 40.0%
! CAATTGGCAAGTCTTATGAG+AGG + chr1_3:1176726-1176745 Msa0095810:CDS 40.0%
TAATGATTCGCTCTTTGCTG+AGG + chr1_3:1176767-1176786 Msa0095810:CDS 40.0%
! ATTTTGGATTGAGGGTCTGT+TGG - chr1_3:1177131-1177150 None:intergenic 40.0%
GTGCAGTTATTATCTGTTGC+TGG + chr1_3:1177437-1177456 Msa0095810:CDS 40.0%
CAGTTATTATCTGTTGCTGG+AGG + chr1_3:1177440-1177459 Msa0095810:CDS 40.0%
! TTGCTGGAGGTTTTCTTTCT+CGG + chr1_3:1177453-1177472 Msa0095810:CDS 40.0%
TAAGCTCATCCATACGTAAC+TGG - chr1_3:1177918-1177937 None:intergenic 40.0%
TGGAAATTCCACCCTAATTG+CGG + chr1_3:1178192-1178211 Msa0095810:intron 40.0%
TCTAGCACCTTCATTGTTCT+GGG + chr1_3:1178266-1178285 Msa0095810:intron 40.0%
ACTCAAACCCAGAACAATGA+AGG - chr1_3:1178276-1178295 None:intergenic 40.0%
! TTCATTGTTCTGGGTTTGAG+TGG + chr1_3:1178275-1178294 Msa0095810:intron 40.0%
! TCATTGTTCTGGGTTTGAGT+GGG + chr1_3:1178276-1178295 Msa0095810:intron 40.0%
TGAGTGGGGAATATAAAGCT+TGG + chr1_3:1178291-1178310 Msa0095810:intron 40.0%
GAGTGGGGAATATAAAGCTT+GGG + chr1_3:1178292-1178311 Msa0095810:intron 40.0%
TTCACGTATTTCAATAGCCC+TGG - chr1_3:1178468-1178487 None:intergenic 40.0%
GGTCCAGCATACATAAAACT+TGG + chr1_3:1178503-1178522 Msa0095810:CDS 40.0%
!! TGCCCAAGTTTTATGTATGC+TGG - chr1_3:1178509-1178528 None:intergenic 40.0%
AGCATGCAATGAAAGGGTAA+AGG - chr1_3:1178616-1178635 None:intergenic 40.0%
!!! GTCACTGCAGAGAGTTTTTT+TGG - chr1_3:1178863-1178882 None:intergenic 40.0%
!!! GTAAGCTCGTACTTTTTCTG+AGG + chr1_3:1179011-1179030 Msa0095810:intron 40.0%
!!! GGTTTTTTTGTTCTTGGTGG+GGG + chr1_3:1179032-1179051 Msa0095810:intron 40.0%
GGGGATTCCATAAAATGTGA+AGG + chr1_3:1179060-1179079 Msa0095810:intron 40.0%
TCCTTCATTTGCAGATGATG+TGG + chr1_3:1179084-1179103 Msa0095810:CDS 40.0%
ATTTGCAGATGATGTGGCTA+TGG + chr1_3:1179090-1179109 Msa0095810:CDS 40.0%
GCTCTAATTGAAGAGGAACT+TGG + chr1_3:1179112-1179131 Msa0095810:CDS 40.0%
AAAATGGTCTGGAAAGCTAC+CGG - chr1_3:1179188-1179207 None:intergenic 40.0%
GAAACATATGCAGCATCTCT+CGG + chr1_3:1179293-1179312 Msa0095810:intron 40.0%
ATCTCTCGGACAGGTATATA+AGG + chr1_3:1179307-1179326 Msa0095810:CDS 40.0%
TCTCTCGGACAGGTATATAA+GGG + chr1_3:1179308-1179327 Msa0095810:CDS 40.0%
GTAACTGTCTCGAGAACAAA+AGG - chr1_3:1179380-1179399 None:intergenic 40.0%
! ATTTTCGAAGAGCCAAACCA+AGG - chr1_3:1179427-1179446 None:intergenic 40.0%
!!! TTTTTAGGTCTCCATTGACG+TGG + chr1_3:1179605-1179624 Msa0095810:intron 40.0%
GCAGAAATTCTTGTGGAATC+TGG + chr1_3:1179816-1179835 Msa0095810:intron 40.0%
!! GGATCGTCCATTTGATTTGT+TGG + chr1_3:1180041-1180060 Msa0095810:intron 40.0%
AGTTGGCCCAACAAATCAAA+TGG - chr1_3:1180051-1180070 None:intergenic 40.0%
GCACATGCAAACAGATCATT+GGG - chr1_3:1180217-1180236 None:intergenic 40.0%
! TTTGTAAAGAAAGAGCGTGG+TGG - chr1_3:1180667-1180686 None:intergenic 40.0%
! ATATCCCGATTTGACTACCA+TGG + chr1_3:1180766-1180785 Msa0095810:intron 40.0%
ACAGCAAGTATACATCAAGG+AGG + chr1_3:1180904-1180923 Msa0095810:CDS 40.0%
CAGCAAGTATACATCAAGGA+GGG + chr1_3:1180905-1180924 Msa0095810:CDS 40.0%
CAGAGCAAAGAAAGCAATGT+CGG + chr1_3:1180966-1180985 Msa0095810:CDS 40.0%
AGTCATCTGCTACCTAAAAC+AGG + chr1_3:1181007-1181026 Msa0095810:CDS 40.0%
AGATGTAGCTTAAAGCTCAC+GGG - chr1_3:1181080-1181099 None:intergenic 40.0%
!! AGGATAGTGGAACATTAGTG+AGG - chr1_3:1181334-1181353 None:intergenic 40.0%
TTAGACTGGAAAGGATTGGA+AGG + chr1_3:1181505-1181524 Msa0095810:intron 40.0%
AATCCAGTCCCTGAATTTAG+AGG - chr1_3:1181577-1181596 None:intergenic 40.0%
! GGGCTCGATTACAATTGTTT+TGG + chr1_3:1181640-1181659 Msa0095810:intron 40.0%
! CGAAGTCTTTTTCTACTTCG+TGG - chr1_3:1182019-1182038 None:intergenic 40.0%
TATGGCTGTCATATTCCTGA+AGG - chr1_3:1182834-1182853 None:intergenic 40.0%
!! TTGCTTTTGCATGGCGATTT+TGG + chr1_3:1182874-1182893 Msa0095810:intron 40.0%
CTTAAACATTAGTGGCATCC+AGG - chr1_3:1183004-1183023 None:intergenic 40.0%
!! GGAAATCTTTTGTTGTACCC+AGG + chr1_3:1183063-1183082 Msa0095810:intron 40.0%
! GTCAATTTTGTAACAAGCCC+TGG - chr1_3:1183084-1183103 None:intergenic 40.0%
TTGACCGACGATCAAAAGTA+TGG + chr1_3:1183099-1183118 Msa0095810:CDS 40.0%
CAATTGCTCATCTCATCCAT+CGG + chr1_3:1183133-1183152 Msa0095810:CDS 40.0%
AATTGCTCATCTCATCCATC+GGG + chr1_3:1183134-1183153 Msa0095810:CDS 40.0%
AAACTTGGTTTCATCCCAGA+TGG + chr1_3:1183186-1183205 Msa0095810:CDS 40.0%
! GGATCTAAATTGACTCCATC+TGG - chr1_3:1183204-1183223 None:intergenic 40.0%
AAACATCAACTTTCAGGAGC+TGG + chr1_3:1183281-1183300 Msa0095810:CDS 40.0%
!! AAGTATGGGGGTATCCTAAA+AGG - chr1_3:1183339-1183358 None:intergenic 40.0%
GCCCTTATAATTAGGGCTAT+CGG + chr1_3:1183360-1183379 Msa0095810:CDS 40.0%
CCCGATAGCCCTAATTATAA+GGG - chr1_3:1183364-1183383 None:intergenic 40.0%
CCCTTATAATTAGGGCTATC+GGG + chr1_3:1183361-1183380 Msa0095810:CDS 40.0%
CCTTATAATTAGGGCTATCG+GGG + chr1_3:1183362-1183381 Msa0095810:CDS 40.0%
!! TTGGAAGGGATAGCTTTAGT+AGG + chr1_3:1183387-1183406 Msa0095810:CDS 40.0%
TGGATAGGCTTCATCAACAA+TGG - chr1_3:1183427-1183446 None:intergenic 40.0%
AGCCTATCCATATATTGCAC+AGG + chr1_3:1183437-1183456 Msa0095810:CDS 40.0%
CAGTTCTTGACAATGACAGA+GGG - chr1_3:1183500-1183519 None:intergenic 40.0%
CTTTCAAGCACTTCTTGTTC+AGG - chr1_3:1183615-1183634 None:intergenic 40.0%
GATGTAATTGGATGCCTTCA+AGG + chr1_3:1183741-1183760 Msa0095810:intron 40.0%
! ACAATTTTGGACAGGATGCA+CGG + chr1_3:1183792-1183811 Msa0095810:intron 40.0%
GCACAAGAAAATTTGCAGTG+TGG - chr1_3:1183981-1184000 None:intergenic 40.0%
AGCTTGGGCTTATTACTAAC+CGG + chr1_3:1184234-1184253 Msa0095810:CDS 40.0%
GTTGTTGAGATGTTACAGAC+TGG - chr1_3:1184283-1184302 None:intergenic 40.0%
CCTCGTCCAAAAGAAATTCT+CGG - chr1_3:1184367-1184386 None:intergenic 40.0%
TAAAAGAAGTCAAGGACGAG+AGG - chr1_3:1184494-1184513 None:intergenic 40.0%
GATCCAAGAAAAATTCGCCA+AGG + chr1_3:1184742-1184761 Msa0095810:intron 40.0%
! GTACCTTGGCGAATTTTTCT+TGG - chr1_3:1184748-1184767 None:intergenic 40.0%
CCAGAAGTAACATTGTACCT+TGG - chr1_3:1184762-1184781 None:intergenic 40.0%
! CCAAGGTACAATGTTACTTC+TGG + chr1_3:1184759-1184778 Msa0095810:intron 40.0%
TGTGGTAAAATTCCACATGG+TGG + chr1_3:1184807-1184826 Msa0095810:intron 40.0%
! TCTGCGCAAGTGTTGTTATA+TGG + chr1_3:1185082-1185101 Msa0095810:intron 40.0%
TGATTGACTGCAGATTGTCA+AGG + chr1_3:1185127-1185146 Msa0095810:intron 40.0%
GATTGACTGCAGATTGTCAA+GGG + chr1_3:1185128-1185147 Msa0095810:intron 40.0%
TGCATTCTGAACTCCTAGTA+AGG - chr1_3:1185195-1185214 None:intergenic 40.0%
! CAGAATGCAAGCCCTATTTT+CGG + chr1_3:1185206-1185225 Msa0095810:CDS 40.0%
GTAGGTACCATACCGAAAAT+AGG - chr1_3:1185221-1185240 None:intergenic 40.0%
TATACCCACCATAACTGAAG+AGG + chr1_3:1185268-1185287 Msa0095810:CDS 40.0%
!! TGTGGGTGGATTAAGCATTA+AGG - chr1_3:1185667-1185686 None:intergenic 40.0%
GGATGATGCTGTATCCATTG+TGG - chr1_3:1176360-1176379 None:intergenic 45.0%
CCTTGAAGAAGAACCGTTGA+CGG - chr1_3:1176519-1176538 None:intergenic 45.0%
! TAAGAGAGTGAGAGCGCAAA+TGG + chr1_3:1176692-1176711 Msa0095810:CDS 45.0%
! AGTCTTATGAGAGGTCTTCG+TGG + chr1_3:1176735-1176754 Msa0095810:CDS 45.0%
! TGTTCAGCTACGTCTTGTTG+AGG + chr1_3:1176794-1176813 Msa0095810:CDS 45.0%
CTAGCTGGATCATACACCAA+TGG - chr1_3:1177368-1177387 None:intergenic 45.0%
! TGCTGGAGGTTTTCTTTCTC+GGG + chr1_3:1177454-1177473 Msa0095810:CDS 45.0%
!! TTTTCTTTCTCGGGTTGCGT+GGG + chr1_3:1177463-1177482 Msa0095810:CDS 45.0%
GTGGGATGTGGTTAACAAGA+AGG + chr1_3:1177481-1177500 Msa0095810:CDS 45.0%
GCAAGCTGCTTAGTCTATCT+TGG - chr1_3:1177529-1177548 None:intergenic 45.0%
CTAAGGGTAGACCGCAATTA+GGG - chr1_3:1178206-1178225 None:intergenic 45.0%
ACCCTTAGGCGCCTTAATAT+CGG + chr1_3:1178218-1178237 Msa0095810:intron 45.0%
!! CAACCCAAGTGCCGATATTA+AGG - chr1_3:1178232-1178251 None:intergenic 45.0%
!! CAGAACAATGAAGGTGCTAG+AGG - chr1_3:1178267-1178286 None:intergenic 45.0%
CTCTAGCACCTTCATTGTTC+TGG + chr1_3:1178265-1178284 Msa0095810:intron 45.0%
! CATTGTTCTGGGTTTGAGTG+GGG + chr1_3:1178277-1178296 Msa0095810:intron 45.0%
ATAACCAGAATGAGGTTGCC+AGG + chr1_3:1178447-1178466 Msa0095810:intron 45.0%
TAACCAGAATGAGGTTGCCA+GGG + chr1_3:1178448-1178467 Msa0095810:intron 45.0%
! GAAGGGAGCATGCAATGAAA+GGG - chr1_3:1178622-1178641 None:intergenic 45.0%
! AGAAGGGAGCATGCAATGAA+AGG - chr1_3:1178623-1178642 None:intergenic 45.0%
GCCACATCATCTGCAAATGA+AGG - chr1_3:1179088-1179107 None:intergenic 45.0%
!! GGCTATGGCTCTAATTGAAG+AGG + chr1_3:1179105-1179124 Msa0095810:CDS 45.0%
! AATCCCCATTTTCCTTCAGG+CGG - chr1_3:1179334-1179353 None:intergenic 45.0%
! CCAAATCCCCATTTTCCTTC+AGG - chr1_3:1179337-1179356 None:intergenic 45.0%
CCTGAAGGAAAATGGGGATT+TGG + chr1_3:1179334-1179353 Msa0095810:CDS 45.0%
CATTATCCGGAACCTTGGTT+TGG + chr1_3:1179412-1179431 Msa0095810:CDS 45.0%
GGCTCTTCGAAAATTTCCTC+AGG + chr1_3:1179433-1179452 Msa0095810:CDS 45.0%
!!! GTGGGCTGCTAGATTTTTTG+AGG + chr1_3:1179644-1179663 Msa0095810:CDS 45.0%
TCTTCATCATTTCGGCGAAG+CGG - chr1_3:1179704-1179723 None:intergenic 45.0%
!! GAAAGTATTGGACTCACCTG+TGG - chr1_3:1179735-1179754 None:intergenic 45.0%
TTTGTTCCTCCCGAATACCT+AGG + chr1_3:1179844-1179863 Msa0095810:intron 45.0%
TATCTTCCTAGGTATTCGGG+AGG - chr1_3:1179853-1179872 None:intergenic 45.0%
CTATCAAGGACTCAAGAGCT+TGG + chr1_3:1179890-1179909 Msa0095810:intron 45.0%
TTTACATGGCCTGCTCTCAA+CGG + chr1_3:1180000-1180019 Msa0095810:intron 45.0%
ATGGACGATCCATGTAAGTC+AGG - chr1_3:1180032-1180051 None:intergenic 45.0%
TTAAAGTGTGCGTCACACAG+AGG - chr1_3:1180089-1180108 None:intergenic 45.0%
GGCACATGCAAACAGATCAT+TGG - chr1_3:1180218-1180237 None:intergenic 45.0%
TTGTGTAGAGAAACGGAGCA+TGG - chr1_3:1180743-1180762 None:intergenic 45.0%
GGAGGGTTCTTACAACAGAA+TGG + chr1_3:1180922-1180941 Msa0095810:CDS 45.0%
! TTTTCATGCTGATCCTCACC+CGG + chr1_3:1181794-1181813 Msa0095810:CDS 45.0%
AATATGATCCGCACTCCTGA+TGG + chr1_3:1181819-1181838 Msa0095810:CDS 45.0%
! CAAGTTTTCCATCAGGAGTG+CGG - chr1_3:1181830-1181849 None:intergenic 45.0%
ACGAAGTCTTTCACTATGGC+TGG - chr1_3:1183165-1183184 None:intergenic 45.0%
!! TTTGCAAGCACTGGCAAGAT+AGG - chr1_3:1183225-1183244 None:intergenic 45.0%
TATCTTGCCAGTGCTTGCAA+AGG + chr1_3:1183224-1183243 Msa0095810:CDS 45.0%
TCAAAGACCTTTGCAAGCAC+TGG - chr1_3:1183234-1183253 None:intergenic 45.0%
!! GTCTTTGACCAGGCTTTAGA+AGG + chr1_3:1183246-1183265 Msa0095810:CDS 45.0%
!! TTTGACCAGGCTTTAGAAGG+TGG + chr1_3:1183249-1183268 Msa0095810:CDS 45.0%
CCCCGATAGCCCTAATTATA+AGG - chr1_3:1183365-1183384 None:intergenic 45.0%
! AATTAGGGCTATCGGGGTTT+TGG + chr1_3:1183368-1183387 Msa0095810:CDS 45.0%
CCAGTTCTTGACAATGACAG+AGG - chr1_3:1183501-1183520 None:intergenic 45.0%
CCTCTGTCATTGTCAAGAAC+TGG + chr1_3:1183498-1183517 Msa0095810:intron 45.0%
AAGGGGGACATCGATGTAAT+TGG + chr1_3:1183729-1183748 Msa0095810:intron 45.0%
TGGATGCCTTCAAGGTTTAG+AGG + chr1_3:1183749-1183768 Msa0095810:intron 45.0%
ATGCCTTCAAGGTTTAGAGG+AGG + chr1_3:1183752-1183771 Msa0095810:intron 45.0%
TGCCTTCAAGGTTTAGAGGA+GGG + chr1_3:1183753-1183772 Msa0095810:intron 45.0%
ATCCCTCCTCTAAACCTTGA+AGG - chr1_3:1183758-1183777 None:intergenic 45.0%
! CAATTTTGGACAGGATGCAC+GGG + chr1_3:1183793-1183812 Msa0095810:intron 45.0%
ATTACAGCTGCCAAAAGTGG+AGG + chr1_3:1184182-1184201 Msa0095810:CDS 45.0%
AGAGGATCTGAAAGGGAGTA+TGG + chr1_3:1184208-1184227 Msa0095810:CDS 45.0%
GATGTTACAGACTGGAATCC+CGG - chr1_3:1184275-1184294 None:intergenic 45.0%
! CCGAGAATTTCTTTTGGACG+AGG + chr1_3:1184364-1184383 Msa0095810:CDS 45.0%
GCAAAAGTAATGCCACCATG+TGG - chr1_3:1184822-1184841 None:intergenic 45.0%
GTTTACTACGAACGAGCGTA+TGG + chr1_3:1184996-1185015 Msa0095810:intron 45.0%
TGCTGTGACAAGGGAACAAA+TGG + chr1_3:1185157-1185176 Msa0095810:CDS 45.0%
! TGCAAGCCCTATTTTCGGTA+TGG + chr1_3:1185211-1185230 Msa0095810:CDS 45.0%
TTCGGTATGGTACCTACCAT+TGG + chr1_3:1185224-1185243 Msa0095810:CDS 45.0%
!! TATGGTGGGTATAAGAGCTG+CGG - chr1_3:1185261-1185280 None:intergenic 45.0%
! GAACAATGTCCAGAAAGTGC+TGG + chr1_3:1185304-1185323 Msa0095810:CDS 45.0%
TCAAGAACTCCAGCACTTTC+TGG - chr1_3:1185316-1185335 None:intergenic 45.0%
TCTGTCAAGCACATCTAGTC+AGG + chr1_3:1185349-1185368 Msa0095810:CDS 45.0%
TGAGGAACATTGAGAGCCTA+AGG - chr1_3:1185513-1185532 None:intergenic 45.0%
!! TATATGTTAATTTATTAATA+TGG + chr1_3:1179491-1179510 Msa0095810:intron 5.0%
!! ACAAATTATTTAAAAATTTA+GGG - chr1_3:1181546-1181565 None:intergenic 5.0%
!! TACAAATTATTTAAAAATTT+AGG - chr1_3:1181547-1181566 None:intergenic 5.0%
!!! ATTTTTAAATAATTTGTATT+TGG + chr1_3:1181549-1181568 Msa0095810:intron 5.0%
!!! TTTTTAAATAATTTGTATTT+GGG + chr1_3:1181550-1181569 Msa0095810:intron 5.0%
!! AATAAAAAAAAATTAATTCA+AGG - chr1_3:1181748-1181767 None:intergenic 5.0%
!! AAAAAAAAAATAATGATATA+CGG - chr1_3:1182169-1182188 None:intergenic 5.0%
!!! AAAATTATTTTAAATTTTCT+TGG + chr1_3:1182609-1182628 Msa0095810:intron 5.0%
!! TATATTATATTTATATATAC+TGG - chr1_3:1185726-1185745 None:intergenic 5.0%
TCATCCCAACTCATCTACCG+CGG + chr1_3:1176374-1176393 Msa0095810:CDS 50.0%
GATTCCGCGGTAGATGAGTT+GGG - chr1_3:1176381-1176400 None:intergenic 50.0%
! GGAGTAAAGGATCGATTCCG+CGG - chr1_3:1176394-1176413 None:intergenic 50.0%
! GACAGGAGCAGGTTTAGGAT+CGG - chr1_3:1176492-1176511 None:intergenic 50.0%
GTAGTGACAGGAGCAGGTTT+AGG - chr1_3:1176497-1176516 None:intergenic 50.0%
CCGTCAACGGTTCTTCTTCA+AGG + chr1_3:1176516-1176535 Msa0095810:CDS 50.0%
AGAGACACCGTTGACAGGTT+TGG - chr1_3:1176552-1176571 None:intergenic 50.0%
AAACCTGTCAACGGTGTCTC+TGG + chr1_3:1176551-1176570 Msa0095810:CDS 50.0%
AACCTGTCAACGGTGTCTCT+GGG + chr1_3:1176552-1176571 Msa0095810:CDS 50.0%
CTGCACAATGCGAGTTGCAA+CGG - chr1_3:1177423-1177442 None:intergenic 50.0%
!! GTTTTCTTTCTCGGGTTGCG+TGG + chr1_3:1177462-1177481 Msa0095810:CDS 50.0%
CTTGACGTGGTGGTCATTGT+CGG + chr1_3:1177556-1177575 Msa0095810:intron 50.0%
! ATAGATCGGGTTGCGTACAC+AGG + chr1_3:1177868-1177887 Msa0095810:intron 50.0%
CCTAAGGGTAGACCGCAATT+AGG - chr1_3:1178207-1178226 None:intergenic 50.0%
CCTAATTGCGGTCTACCCTT+AGG + chr1_3:1178204-1178223 Msa0095810:intron 50.0%
! GCCGATATTAAGGCGCCTAA+GGG - chr1_3:1178222-1178241 None:intergenic 50.0%
! TGCCGATATTAAGGCGCCTA+AGG - chr1_3:1178223-1178242 None:intergenic 50.0%
GCGCCTTAATATCGGCACTT+GGG + chr1_3:1178226-1178245 Msa0095810:intron 50.0%
GGTGCTAGAGGATGCAATGA+AGG - chr1_3:1178255-1178274 None:intergenic 50.0%
GCAGTTCTCACCTTACAAGC+TGG + chr1_3:1178314-1178333 Msa0095810:intron 50.0%
GCTGCAGGTGACAGTATATC+AGG - chr1_3:1178548-1178567 None:intergenic 50.0%
TGCAACTCTGTCATTGCTGC+AGG - chr1_3:1178563-1178582 None:intergenic 50.0%
! TTTTGTTCTTGGTGGGGGTG+TGG + chr1_3:1179037-1179056 Msa0095810:intron 50.0%
! TTTGTTCTTGGTGGGGGTGT+GGG + chr1_3:1179038-1179057 Msa0095810:intron 50.0%
AAGAGGAACTTGGTCAGCCA+TGG + chr1_3:1179122-1179141 Msa0095810:CDS 50.0%
ATATGCAGCATCTCTCGGAC+AGG + chr1_3:1179298-1179317 Msa0095810:intron 50.0%
GAAGAGCCAAACCAAGGTTC+CGG - chr1_3:1179421-1179440 None:intergenic 50.0%
TAGGTCTCCATTGACGTGGT+TGG + chr1_3:1179609-1179628 Msa0095810:intron 50.0%
AGGTCTCCATTGACGTGGTT+GGG + chr1_3:1179610-1179629 Msa0095810:intron 50.0%
AACCAACCCAACCACGTCAA+TGG - chr1_3:1179619-1179638 None:intergenic 50.0%
GATGAAGAAAGACCTGCCAC+AGG + chr1_3:1179716-1179735 Msa0095810:CDS 50.0%
CGGACAAGTCCTGACTTACA+TGG + chr1_3:1180020-1180039 Msa0095810:intron 50.0%
GGACGTGTGGGAAGTTGTAA+AGG - chr1_3:1180646-1180665 None:intergenic 50.0%
ACGGAGCATGGAGAAACAGA+GGG - chr1_3:1180731-1180750 None:intergenic 50.0%
AACGGAGCATGGAGAAACAG+AGG - chr1_3:1180732-1180751 None:intergenic 50.0%
GGTCCTCTAAATTCAGGGAC+TGG + chr1_3:1181571-1181590 Msa0095810:intron 50.0%
TTTCATGCTGATCCTCACCC+GGG + chr1_3:1181795-1181814 Msa0095810:CDS 50.0%
CTATGGCTGGATAATCCCGA+TGG - chr1_3:1183152-1183171 None:intergenic 50.0%
GCTTGCAAAGGTCTTTGACC+AGG + chr1_3:1183236-1183255 Msa0095810:CDS 50.0%
!! ACCAGGCTTTAGAAGGTGGA+GGG + chr1_3:1183253-1183272 Msa0095810:CDS 50.0%
! TCTTGACGGATGAATCCCCT+CGG + chr1_3:1184066-1184085 Msa0095810:CDS 50.0%
! TAAAGCACTCCTTAGCCGAG+GGG - chr1_3:1184084-1184103 None:intergenic 50.0%
! GTAAAGCACTCCTTAGCCGA+GGG - chr1_3:1184085-1184104 None:intergenic 50.0%
! ATCCTCTCCACCTCCACTTT+TGG - chr1_3:1184195-1184214 None:intergenic 50.0%
GAGGTGGAGAGGATCTGAAA+GGG + chr1_3:1184201-1184220 Msa0095810:CDS 50.0%
! AAAGGGAGTATGGCTGAGCT+TGG + chr1_3:1184218-1184237 Msa0095810:CDS 50.0%
! AAGGGAGTATGGCTGAGCTT+GGG + chr1_3:1184219-1184238 Msa0095810:CDS 50.0%
CCGGCAAGAGATATTCTGAC+CGG - chr1_3:1184256-1184275 None:intergenic 50.0%
CCGGTCAGAATATCTCTTGC+CGG + chr1_3:1184253-1184272 Msa0095810:CDS 50.0%
CGGTCAGAATATCTCTTGCC+GGG + chr1_3:1184254-1184273 Msa0095810:CDS 50.0%
!! AGGGCATTGATGCTGTGACA+AGG + chr1_3:1185147-1185166 Msa0095810:CDS 50.0%
!! GGGCATTGATGCTGTGACAA+GGG + chr1_3:1185148-1185167 Msa0095810:CDS 50.0%
! GGCTTAAAGCGTCCAATGGT+AGG - chr1_3:1185239-1185258 None:intergenic 50.0%
!! ATGGTGGGTATAAGAGCTGC+GGG - chr1_3:1185260-1185279 None:intergenic 50.0%
ATTTGTCTGTGGGTGGCCTT+AGG + chr1_3:1185494-1185513 Msa0095810:intron 50.0%
GCAACACTGGCAGAAGTTCT+TGG - chr1_3:1185542-1185561 None:intergenic 50.0%
AGAACTTCTGCCAGTGTTGC+CGG + chr1_3:1185542-1185561 Msa0095810:CDS 50.0%
AGCACTTTAGCAGAGATGCC+CGG - chr1_3:1185564-1185583 None:intergenic 50.0%
CGATTCCGCGGTAGATGAGT+TGG - chr1_3:1176382-1176401 None:intergenic 55.0%
GAATGGGACGAGCGGAGTAA+AGG - chr1_3:1176407-1176426 None:intergenic 55.0%
GTTGTTGTGGCGGTGGGAAT+GGG - chr1_3:1176423-1176442 None:intergenic 55.0%
CGGAGATACGGTTAGAACGC+CGG - chr1_3:1176460-1176479 None:intergenic 55.0%
! TTTAGGATCGGTGGCGACAG+CGG - chr1_3:1176480-1176499 None:intergenic 55.0%
! AGGAGCAGGTTTAGGATCGG+TGG - chr1_3:1176489-1176508 None:intergenic 55.0%
TTGACGGTAGTGACAGGAGC+AGG - chr1_3:1176503-1176522 None:intergenic 55.0%
GCTCCTGTCACTACCGTCAA+CGG + chr1_3:1176503-1176522 Msa0095810:CDS 55.0%
GAACCGTTGACGGTAGTGAC+AGG - chr1_3:1176509-1176528 None:intergenic 55.0%
ACACCGTTGACAGGTTTGGC+AGG - chr1_3:1176548-1176567 None:intergenic 55.0%
ACCTGTCAACGGTGTCTCTG+GGG + chr1_3:1176553-1176572 Msa0095810:CDS 55.0%
GCTTGCGTGCATTCTTGACG+TGG + chr1_3:1177543-1177562 Msa0095810:intron 55.0%
TGCGTGCATTCTTGACGTGG+TGG + chr1_3:1177546-1177565 Msa0095810:intron 55.0%
AGGGTAGACCGCAATTAGGG+TGG - chr1_3:1178203-1178222 None:intergenic 55.0%
GGCGCCTTAATATCGGCACT+TGG + chr1_3:1178225-1178244 Msa0095810:intron 55.0%
TAGCCCTGGCAACCTCATTC+TGG - chr1_3:1178454-1178473 None:intergenic 55.0%
! TTGTTCTTGGTGGGGGTGTG+GGG + chr1_3:1179039-1179058 Msa0095810:intron 55.0%
ATGGTCTGGAAAGCTACCGG+CGG - chr1_3:1179185-1179204 None:intergenic 55.0%
GGTATATAAGGGCCGCCTGA+AGG + chr1_3:1179319-1179338 Msa0095810:CDS 55.0%
AAGGGCCGCCTGAAGGAAAA+TGG + chr1_3:1179326-1179345 Msa0095810:CDS 55.0%
AGGGCCGCCTGAAGGAAAAT+GGG + chr1_3:1179327-1179346 Msa0095810:CDS 55.0%
CTCCATTGACGTGGTTGGGT+TGG + chr1_3:1179614-1179633 Msa0095810:CDS 55.0%
!! TGGTTGGGTTGGTTGACGAG+TGG + chr1_3:1179625-1179644 Msa0095810:CDS 55.0%
!! GGTTGGGTTGGTTGACGAGT+GGG + chr1_3:1179626-1179645 Msa0095810:CDS 55.0%
GTATTGGACTCACCTGTGGC+AGG - chr1_3:1179731-1179750 None:intergenic 55.0%
AGGACTTGTCCGTTGAGAGC+AGG - chr1_3:1180012-1180031 None:intergenic 55.0%
!! AAAGAGCGTGGTGGACGTGT+GGG - chr1_3:1180658-1180677 None:intergenic 55.0%
TTCATGCTGATCCTCACCCG+GGG + chr1_3:1181796-1181815 Msa0095810:CDS 55.0%
GAGTGCGGATCATATTCCCC+GGG - chr1_3:1181815-1181834 None:intergenic 55.0%
GGAGTGCGGATCATATTCCC+CGG - chr1_3:1181816-1181835 None:intergenic 55.0%
!! GACCAGGCTTTAGAAGGTGG+AGG + chr1_3:1183252-1183271 Msa0095810:CDS 55.0%
!! CCAGGCTTTAGAAGGTGGAG+GGG + chr1_3:1183254-1183273 Msa0095810:CDS 55.0%
!!! AGGGCTATCGGGGTTTTGGA+AGG + chr1_3:1183372-1183391 Msa0095810:CDS 55.0%
!!! GGGCTATCGGGGTTTTGGAA+GGG + chr1_3:1183373-1183392 Msa0095810:CDS 55.0%
GACAGGATGCACGGGAGAAA+TGG + chr1_3:1183801-1183820 Msa0095810:intron 55.0%
! CGTAAAGCACTCCTTAGCCG+AGG - chr1_3:1184086-1184105 None:intergenic 55.0%
ACAGCTGCCAAAAGTGGAGG+TGG + chr1_3:1184185-1184204 Msa0095810:CDS 55.0%
TGCCAAAAGTGGAGGTGGAG+AGG + chr1_3:1184190-1184209 Msa0095810:CDS 55.0%
GGAGGTGGAGAGGATCTGAA+AGG + chr1_3:1184200-1184219 Msa0095810:CDS 55.0%
ATCTCAACAACCGCAGCCAG+TGG + chr1_3:1184292-1184311 Msa0095810:CDS 55.0%
AACCGCAGCCAGTGGAAACA+CGG + chr1_3:1184300-1184319 Msa0095810:CDS 55.0%
CTTAAGCGCCATAGGCAGCA+TGG - chr1_3:1184902-1184921 None:intergenic 55.0%
! TGCGGGCTTAAAGCGTCCAA+TGG - chr1_3:1185243-1185262 None:intergenic 55.0%
GTGCTGGAGTTCTTGACTGC+AGG + chr1_3:1185320-1185339 Msa0095810:CDS 55.0%
GAACTTCTGCCAGTGTTGCC+GGG + chr1_3:1185543-1185562 Msa0095810:CDS 55.0%
GGTTGTTGTGGCGGTGGGAA+TGG - chr1_3:1176424-1176443 None:intergenic 60.0%
AGGGAGGTTGTTGTGGCGGT+GGG - chr1_3:1176429-1176448 None:intergenic 60.0%
GGAGAGGGAGGTTGTTGTGG+CGG - chr1_3:1176433-1176452 None:intergenic 60.0%
GACGGAGAGGGAGGTTGTTG+TGG - chr1_3:1176436-1176455 None:intergenic 60.0%
TACGGTTAGAACGCCGGCGA+CGG - chr1_3:1176454-1176473 None:intergenic 60.0%
CCGTTGACAGGTTTGGCAGG+CGG - chr1_3:1176545-1176564 None:intergenic 60.0%
CCGCCTGCCAAACCTGTCAA+CGG + chr1_3:1176542-1176561 Msa0095810:CDS 60.0%
ACCCCAGAGACACCGTTGAC+AGG - chr1_3:1176557-1176576 None:intergenic 60.0%
ATGCGAGTTGCAACGGAGCG+AGG - chr1_3:1177416-1177435 None:intergenic 60.0%
! TTCTCGGGTTGCGTGGGATG+TGG + chr1_3:1177469-1177488 Msa0095810:CDS 60.0%
GACGTGGTGGTCATTGTCGG+TGG + chr1_3:1177559-1177578 Msa0095810:intron 60.0%
! TGTTCTTGGTGGGGGTGTGG+GGG + chr1_3:1179040-1179059 Msa0095810:intron 60.0%
TCAACCTCTCCCATTGCCGC+CGG + chr1_3:1179166-1179185 Msa0095810:CDS 60.0%
GGAAAGCTACCGGCGGCAAT+GGG - chr1_3:1179178-1179197 None:intergenic 60.0%
TGGAAAGCTACCGGCGGCAA+TGG - chr1_3:1179179-1179198 None:intergenic 60.0%
GGGCCGCCTGAAGGAAAATG+GGG + chr1_3:1179328-1179347 Msa0095810:CDS 60.0%
!! GAAAGAGCGTGGTGGACGTG+TGG - chr1_3:1180659-1180678 None:intergenic 60.0%
CGGATCATATTCCCCGGGTG+AGG - chr1_3:1181810-1181829 None:intergenic 60.0%
!! CCCCTCCACCTTCTAAAGCC+TGG - chr1_3:1183257-1183276 None:intergenic 60.0%
CGGATGAATCCCCTCGGCTA+AGG + chr1_3:1184072-1184091 Msa0095810:CDS 60.0%
ACCGCAGCCAGTGGAAACAC+GGG + chr1_3:1184301-1184320 Msa0095810:CDS 60.0%
GGCTACTGCCATGCTGCCTA+TGG + chr1_3:1184891-1184910 Msa0095810:intron 60.0%
GAGGGAGGTTGTTGTGGCGG+TGG - chr1_3:1176430-1176449 None:intergenic 65.0%
ACAACCTCCCTCTCCGTCGC+CGG + chr1_3:1176438-1176457 Msa0095810:CDS 65.0%
TAGAACGCCGGCGACGGAGA+GGG - chr1_3:1176448-1176467 None:intergenic 65.0%
TTAGAACGCCGGCGACGGAG+AGG - chr1_3:1176449-1176468 None:intergenic 65.0%
CGGTGGCGACAGCGGAGATA+CGG - chr1_3:1176472-1176491 None:intergenic 65.0%
! GTTCTTGGTGGGGGTGTGGG+GGG + chr1_3:1179041-1179060 Msa0095810:intron 65.0%
! GCCCGTGTTTCCACTGGCTG+CGG - chr1_3:1184305-1184324 None:intergenic 65.0%
AGGGCTGCCCGTGTTTCCAC+TGG - chr1_3:1184311-1184330 None:intergenic 65.0%
GCAGAGATGCCCGGCAACAC+TGG - chr1_3:1185555-1185574 None:intergenic 65.0%
GGCGGTGGGAATGGGACGAG+CGG - chr1_3:1176415-1176434 None:intergenic 70.0%
GCTACCGGCGGCAATGGGAG+AGG - chr1_3:1179173-1179192 None:intergenic 70.0%
AACGCCGGCGACGGAGAGGG+AGG - chr1_3:1176445-1176464 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 1176255 1185858 1176255 ID=Msa0095810;Name=Msa0095810
chr1_3 mRNA 1176255 1185858 1176255 ID=Msa0095810-mRNA-1;Parent=Msa0095810;Name=Msa0095810-mRNA-1;_AED=0.06;_eAED=0.06;_QI=83|1|1|1|0.92|0.85|14|208|784
chr1_3 exon 1176255 1176286 1176255 ID=Msa0095810-mRNA-1:exon:151;Parent=Msa0095810-mRNA-1
chr1_3 exon 1176311 1176574 1176311 ID=Msa0095810-mRNA-1:exon:152;Parent=Msa0095810-mRNA-1
chr1_3 exon 1176666 1176815 1176666 ID=Msa0095810-mRNA-1:exon:153;Parent=Msa0095810-mRNA-1
chr1_3 exon 1177341 1177511 1177341 ID=Msa0095810-mRNA-1:exon:154;Parent=Msa0095810-mRNA-1
chr1_3 exon 1178455 1178598 1178455 ID=Msa0095810-mRNA-1:exon:155;Parent=Msa0095810-mRNA-1
chr1_3 exon 1179082 1179187 1179082 ID=Msa0095810-mRNA-1:exon:156;Parent=Msa0095810-mRNA-1
chr1_3 exon 1179306 1179454 1179306 ID=Msa0095810-mRNA-1:exon:157;Parent=Msa0095810-mRNA-1
chr1_3 exon 1179612 1179737 1179612 ID=Msa0095810-mRNA-1:exon:158;Parent=Msa0095810-mRNA-1
chr1_3 exon 1180885 1181028 1180885 ID=Msa0095810-mRNA-1:exon:159;Parent=Msa0095810-mRNA-1
chr1_3 exon 1181777 1181864 1181777 ID=Msa0095810-mRNA-1:exon:160;Parent=Msa0095810-mRNA-1
chr1_3 exon 1183085 1183458 1183085 ID=Msa0095810-mRNA-1:exon:161;Parent=Msa0095810-mRNA-1
chr1_3 exon 1184062 1184385 1184062 ID=Msa0095810-mRNA-1:exon:162;Parent=Msa0095810-mRNA-1
chr1_3 exon 1185140 1185370 1185140 ID=Msa0095810-mRNA-1:exon:163;Parent=Msa0095810-mRNA-1
chr1_3 exon 1185516 1185858 1185516 ID=Msa0095810-mRNA-1:exon:164;Parent=Msa0095810-mRNA-1
chr1_3 five_prime_UTR 1176255 1176286 1176255 ID=Msa0095810-mRNA-1:five_prime_utr;Parent=Msa0095810-mRNA-1
chr1_3 five_prime_UTR 1176311 1176361 1176311 ID=Msa0095810-mRNA-1:five_prime_utr;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1176362 1176574 1176362 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1176666 1176815 1176666 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1177341 1177511 1177341 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1178455 1178598 1178455 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1179082 1179187 1179082 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1179306 1179454 1179306 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1179612 1179737 1179612 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1180885 1181028 1180885 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1181777 1181864 1181777 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1183085 1183458 1183085 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1184062 1184385 1184062 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1185140 1185370 1185140 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 CDS 1185516 1185650 1185516 ID=Msa0095810-mRNA-1:cds;Parent=Msa0095810-mRNA-1
chr1_3 three_prime_UTR 1185651 1185858 1185651 ID=Msa0095810-mRNA-1:three_prime_utr;Parent=Msa0095810-mRNA-1
Gene Sequence

>Msa0095810

ATGGATACAGCATCATCCCAACTCATCTACCGCGGAATCGATCCTTTACTCCGCTCGTCCCATTCCCACCGCCACAACAACCTCCCTCTCCGTCGCCGGCGTTCTAACCGTATCTCCGCTGTCGCCACCGATCCTAAACCTGCTCCTGTCACTACCGTCAACGGTTCTTCTTCAAGGTCTCCGCCTGCCAAACCTGTCAACGGTGTCTCTGGGAGAATTGGTGATGTTTCGAAGGAGATTAAGAGAGTGAGAGCGCAAATGGAAGAAGATGAACAATTGGCAAGTCTTATGAGAGGTCTTCGTGGTCAGAGTCTTAATGATTCGCTCTTTGCTGAGGATGATGTTCAGCTACGTCTTGTTGAGGTAGATGAAAGTAGTGAATTTCTACCATTGGTGTATGATCCAGCTAGTATTACTGCATATTGGGGAAAACGTCCTCGCTCCGTTGCAACTCGCATTGTGCAGTTATTATCTGTTGCTGGAGGTTTTCTTTCTCGGGTTGCGTGGGATGTGGTTAACAAGAAGGTTAAAGAGAATGAGGTTGCCAGGGCTATTGAAATACGTGAAATTGTGACATCTTTGGGTCCAGCATACATAAAACTTGGGCAAGCATTGAGCATACGACCTGATATACTGTCACCTGCAGCAATGACAGAGTTGCAGAAGCTCTGTGATAAAGTTCCTTCATTTGCAGATGATGTGGCTATGGCTCTAATTGAAGAGGAACTTGGTCAGCCATGGCAAAATGTCTATTCTGAATTATCAACCTCTCCCATTGCCGCCGCATCTCTCGGACAGGTATATAAGGGCCGCCTGAAGGAAAATGGGGATTTGGTTGCTGTTAAAGTGCAAAGACCTTTTGTTCTCGAGACAGTTACCATTGATTTATTCATTATCCGGAACCTTGGTTTGGCTCTTCGAAAATTTCCTCAGGTCTCCATTGACGTGGTTGGGTTGGTTGACGAGTGGGCTGCTAGATTTTTTGAGGAGTTAGACTATGTGAATGAAGGTGAAAATGGAGACCGCTTCGCCGAAATGATGAAGAAAGACCTGCCACAGGTTGTAATACCAAGAACTTACAGCAAGTATACATCAAGGAGGGTTCTTACAACAGAATGGATTGACGGAGAGAAGCTGTCACAGAGCAAAGAAAGCAATGTCGGAGAATTAGTTAATGTTGGAGTCATCTGCTACCTAAAACAGCTGCTTGATACTGGCTTTTTTCATGCTGATCCTCACCCGGGGAATATGATCCGCACTCCTGATGGAAAACTTGCAATACTTGACTTTGGGCTTGTTACAAAATTGACCGACGATCAAAAGTATGGAATGATTGAAGCAATTGCTCATCTCATCCATCGGGATTATCCAGCCATAGTGAAAGACTTCGTTAAACTTGGTTTCATCCCAGATGGAGTCAATTTAGATCCTATCTTGCCAGTGCTTGCAAAGGTCTTTGACCAGGCTTTAGAAGGTGGAGGGGCAAAAAACATCAACTTTCAGGAGCTGGCATCAGATTTAGCACAAATTACCTTTGATTATCCTTTTAGGATACCCCCATACTTTGCCCTTATAATTAGGGCTATCGGGGTTTTGGAAGGGATAGCTTTAGTAGGAAATCCTGATTTTGCCATTGTTGATGAAGCCTATCCATATATTGCACAGAGACTCTTGACGGATGAATCCCCTCGGCTAAGGAGTGCTTTACGTTACACTATATATGGGAAATCTGGAGTTTTCGATGCTGAAAGATTTATTGATGTCATGCAAGCCTTCGAGAATTTTATTACAGCTGCCAAAAGTGGAGGTGGAGAGGATCTGAAAGGGAGTATGGCTGAGCTTGGGCTTATTACTAACCGGTCAGAATATCTCTTGCCGGGATTCCAGTCTGTAACATCTCAACAACCGCAGCCAGTGGAAACACGGGCAGCCCTAGCATTTTTGCTGTCTGATAAGGGGAATTTTTTCCGAGAATTTCTTTTGGACGAGATTGTCAAGGGCATTGATGCTGTGACAAGGGAACAAATGGTAAGAATTATGTCCTTACTAGGAGTTCAGAATGCAAGCCCTATTTTCGGTATGGTACCTACCATTGGACGCTTTAAGCCCGCAGCTCTTATACCCACCATAACTGAAGAGGATAAAGTTATACTGAACAATGTCCAGAAAGTGCTGGAGTTCTTGACTGCAGGAAGCACTCTGTCAAGCACATCTAGTCAGGCTCTCAATGTTCCTCAGATTATCCAAGAACTTCTGCCAGTGTTGCCGGGCATCTCTGCTAAAGTGCTTCCTGATGTTCTTAGCAGATTATCTTCTCGGGTATTAGCGCGATTAATTCGTGATGCATTTTTGTAA
Protein sequence

>Msa0095810

MDTASSQLIYRGIDPLLRSSHSHRHNNLPLRRRRSNRISAVATDPKPAPVTTVNGSSSRSPPAKPVNGVSGRIGDVSKEIKRVRAQMEEDEQLASLMRGLRGQSLNDSLFAEDDVQLRLVEVDESSEFLPLVYDPASITAYWGKRPRSVATRIVQLLSVAGGFLSRVAWDVVNKKVKENEVARAIEIREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFADDVAMALIEEELGQPWQNVYSELSTSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLALRKFPQVSIDVVGLVDEWAARFFEELDYVNEGENGDRFAEMMKKDLPQVVIPRTYSKYTSRRVLTTEWIDGEKLSQSKESNVGELVNVGVICYLKQLLDTGFFHADPHPGNMIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYPAIVKDFVKLGFIPDGVNLDPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLKGSMAELGLITNRSEYLLPGFQSVTSQQPQPVETRAALAFLLSDKGNFFREFLLDEIVKGIDAVTREQMVRIMSLLGVQNASPIFGMVPTIGRFKPAALIPTITEEDKVILNNVQKVLEFLTAGSTLSSTSSQALNVPQIIQELLPVLPGISAKVLPDVLSRLSSRVLARLIRDAFL*