AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011410 MtrunA17_Chr1g0159921 99.058 531 5 0 1 531 1 531 0.0 1099
Msa0011410 MtrunA17_Chr3g0136771 25.926 351 211 15 210 531 99 429 3.99e-26 112
Msa0011410 MtrunA17_Chr8g0378671 23.077 442 253 22 129 513 2 413 2.47e-14 75.9
Msa0011410 MtrunA17_Chr8g0378721 21.448 359 211 14 213 521 85 422 6.94e-14 74.3
Msa0011410 MtrunA17_Chr8g0378701 21.594 389 221 16 121 455 8 366 3.15e-11 65.5
Msa0011410 MtrunA17_Chr4g0027961 25.862 174 109 6 210 364 93 265 3.76e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011410 AT1G44446.1 75.376 532 124 2 3 527 4 535 0.0 833
Msa0011410 AT1G44446.2 75.417 480 111 2 3 475 4 483 0.0 743
Msa0011410 AT1G44446.4 78.060 433 95 0 95 527 1 433 0.0 718
Msa0011410 AT1G44446.3 72.324 383 99 2 3 378 4 386 0.0 558
Msa0011410 AT2G24820.1 25.000 336 209 12 213 520 88 408 3.61e-25 109
Msa0011410 AT3G44880.1 26.667 225 138 9 210 410 85 306 8.42e-12 68.2

Find 160 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACAACAATCCCCTTTA+AGG 0.138946 1_1:-17142232 None:intergenic
TGCTTTCTCTGCTGACTTAA+AGG 0.172252 1_1:+17139542 Msa0011410:CDS
ATCCTAATTTAAAGAATTTC+TGG 0.191900 1_1:+17139511 Msa0011410:CDS
AGGAACCATGGGTTATCTTT+AGG 0.213560 1_1:+17139743 Msa0011410:CDS
CAGGGTTTGAAAGGTAAATT+TGG 0.219218 1_1:+17138381 Msa0011410:intron
ACAGTGTTAAATCCAATTTA+TGG 0.235520 1_1:+17142174 Msa0011410:three_prime_UTR
GCTTTGTCCTTTCAATTTCC+CGG 0.258774 1_1:-17141103 None:intergenic
CTCCATAGATGTTCCATAAA+AGG 0.264680 1_1:-17141243 None:intergenic
CAGGTGTGTTGAACATTCTT+TGG 0.268435 1_1:-17141127 None:intergenic
TACCAGAAATTCTTTAAATT+AGG 0.270588 1_1:-17139513 None:intergenic
TGGTATAACCACACCCTTAA+AGG 0.278106 1_1:+17142218 Msa0011410:three_prime_UTR
GGTTGAACACGGATTACTTT+TGG 0.283837 1_1:+17140350 Msa0011410:CDS
CATCTGGTCTGCAAGGATAT+TGG 0.286825 1_1:+17141010 Msa0011410:CDS
CTTTATTCATTCTCTCTTGT+TGG 0.291005 1_1:-17141802 None:intergenic
CCTTCTTTACTACCTCCTTC+TGG 0.291205 1_1:+17140158 Msa0011410:CDS
CTTAGTGGCGCTTTAGATCT+TGG 0.291618 1_1:-17138471 None:intergenic
AAGATGGTGAAACCATAAAT+TGG 0.296753 1_1:-17142186 None:intergenic
GGAACCATGGGTTATCTTTA+GGG 0.299759 1_1:+17139744 Msa0011410:CDS
TATGGTTTCACCATCTTAGA+TGG 0.312209 1_1:+17142192 Msa0011410:three_prime_UTR
GTCGATTGGCACCATGAAAA+AGG 0.314224 1_1:+17139138 Msa0011410:CDS
AATGTCGAAGTATGAGTAAA+AGG 0.321362 1_1:-17140399 None:intergenic
AAACTCTTGCTTCAGATATA+TGG 0.329301 1_1:-17139302 None:intergenic
ATCTGGTCTGCAAGGATATT+GGG 0.329604 1_1:+17141011 Msa0011410:CDS
AGCAAGAGTTTCTACTGCTT+TGG 0.334343 1_1:+17139314 Msa0011410:CDS
ACATTTAGCATTCGAGTAGA+TGG 0.343874 1_1:-17140053 None:intergenic
AACCTTGCATTAGAACTTCA+TGG 0.356961 1_1:+17142030 Msa0011410:three_prime_UTR
AAAGGATCTAGCTGGGTTGC+AGG 0.360380 1_1:+17139156 Msa0011410:CDS
ACAGATTGTCATGGAACTTC+CGG 0.364114 1_1:+17140329 Msa0011410:intron
ACACTGTACACAAATTTAAG+AGG 0.365108 1_1:-17142158 None:intergenic
ACTAAGTAAAGGAAAAGTTT+TGG 0.365161 1_1:+17138488 Msa0011410:CDS
TTTGGAGTGTTTGCTGTGTT+TGG 0.368010 1_1:+17138399 Msa0011410:CDS
ATGCTTCTTAAGATCCAATA+AGG 0.383649 1_1:+17141976 Msa0011410:three_prime_UTR
AAGAAAAGCTTAAATGTATC+AGG 0.384915 1_1:+17139471 Msa0011410:CDS
ACTCGCTTACATGGAAGAAT+TGG 0.386034 1_1:+17139341 Msa0011410:CDS
CATACAACAATCCCCTTTAA+GGG 0.387303 1_1:-17142231 None:intergenic
ATCATGCCTAGCTACTTCTA+TGG 0.388459 1_1:-17138523 None:intergenic
AAGAAGGGATGATCTGGATT+TGG 0.390925 1_1:+17140105 Msa0011410:CDS
CCAAGCTTGTCATAGGTAAC+TGG 0.395981 1_1:-17141845 None:intergenic
GGATCCCTATCCGATTGATA+TGG 0.397893 1_1:+17141032 Msa0011410:CDS
GGTATAACCACACCCTTAAA+GGG 0.399225 1_1:+17142219 Msa0011410:three_prime_UTR
CTTCCAAGCTTGACACCAAA+AGG 0.403732 1_1:+17137385 Msa0011410:CDS
TGAATAAAGGTGCAAATGTA+TGG 0.404916 1_1:+17141816 Msa0011410:CDS
GGAGTTTCGACCACCTTGTA+TGG 0.406336 1_1:+17141053 Msa0011410:CDS
TTGAGAAAGAAGGGATGATC+TGG 0.411706 1_1:+17140099 Msa0011410:CDS
TTGGAGGGATGCATTGGAAA+AGG 0.412803 1_1:+17141883 Msa0011410:CDS
CTAAGGGATGGAGTGTTCCT+AGG 0.413929 1_1:+17140424 Msa0011410:CDS
CCTTACTCCAAGCTTGTCAT+AGG 0.414297 1_1:-17141852 None:intergenic
AGCAGTAGCTATGGCATTCA+TGG 0.421129 1_1:-17137331 None:intergenic
TTGGAGTAAGGTATAGGCTT+TGG 0.424370 1_1:+17141864 Msa0011410:CDS
AAGAAAGAGAGGTACCCTTT+TGG 0.427629 1_1:-17137400 None:intergenic
GTATGGTTCTATCAACCATT+GGG 0.429913 1_1:+17141070 Msa0011410:CDS
TTGGAAGTTCTACAAAAGAT+AGG 0.437166 1_1:-17137369 None:intergenic
TCATATCAACACAACATTCC+CGG 0.445027 1_1:-17142078 None:intergenic
TTAATTATTGTGTGTGTTGA+AGG 0.445378 1_1:-17141921 None:intergenic
ACAAGCTTGGAGTAAGGTAT+AGG 0.446291 1_1:+17141858 Msa0011410:CDS
AAAAGTAATCCGTGTTCAAC+CGG 0.447132 1_1:-17140348 None:intergenic
AAGTCAGCAGAGAAAGCAAC+AGG 0.447177 1_1:-17139537 None:intergenic
CTTTGTCCTTTCAATTTCCC+GGG 0.450716 1_1:-17141102 None:intergenic
TTAGGATGGTATGACTGAAC+TGG 0.452128 1_1:-17139495 None:intergenic
GGGTGCGATATTTGATGTAC+AGG 0.456724 1_1:+17138446 Msa0011410:CDS
AGGGGTAAAGATGGCAAACC+TGG 0.457895 1_1:+17139763 Msa0011410:CDS
CCAGAAGGAGGTAGTAAAGA+AGG 0.468373 1_1:-17140158 None:intergenic
TAAAAGGCATATGCTTAAGA+AGG 0.468665 1_1:-17141227 None:intergenic
CAACAAGAGAGAATGAATAA+AGG 0.472000 1_1:+17141803 Msa0011410:CDS
ATGTCGAAGTATGAGTAAAA+GGG 0.472157 1_1:-17140398 None:intergenic
ATGATATTGAGTACTTAGAT+TGG 0.472398 1_1:+17138541 Msa0011410:CDS
TGTATGGTTCTATCAACCAT+TGG 0.476351 1_1:+17141069 Msa0011410:CDS
CATCATGCTCCTCCATGAAA+AGG 0.476387 1_1:+17138587 Msa0011410:CDS
TAAAGCAGAAGCAGTAGCTA+TGG 0.478061 1_1:-17137340 None:intergenic
TCATCTTGGCTCTGTAAATG+AGG 0.484207 1_1:+17139825 Msa0011410:CDS
ATCCCTTCTTTCTCAAAACA+TGG 0.488856 1_1:-17140092 None:intergenic
GGTTCCTCAAAACATTCCAT+TGG 0.490124 1_1:-17139727 None:intergenic
AACAATCCCCTTTAAGGGTG+TGG 0.490466 1_1:-17142226 None:intergenic
TAGGCTTTGGAGGGATGCAT+TGG 0.491835 1_1:+17141877 Msa0011410:CDS
GAGTAAGGTATAGGCTTTGG+AGG 0.496119 1_1:+17141867 Msa0011410:CDS
GTTATCTTTAGGGGTAAAGA+TGG 0.497489 1_1:+17139754 Msa0011410:CDS
GTTCCTCAAAACATTCCATT+GGG 0.498608 1_1:-17139726 None:intergenic
AGAGCATGTCCCCTTCATCT+TGG 0.499561 1_1:+17139811 Msa0011410:CDS
ACCATTGGGATTTCGAAGCC+CGG 0.501562 1_1:+17141084 Msa0011410:CDS
TTTGGATAAACTCGCTTACA+TGG 0.502971 1_1:+17139332 Msa0011410:CDS
TGGAGGGATGCATTGGAAAA+GGG 0.507380 1_1:+17141884 Msa0011410:CDS
TTCACCATCTTAGATGGTGG+TGG 0.507584 1_1:+17142198 Msa0011410:three_prime_UTR
AGAAATTCTTTAAATTAGGA+TGG 0.513147 1_1:-17139509 None:intergenic
CTATGAAAGTGATGAGAAGA+AGG 0.513839 1_1:-17137308 None:intergenic
ACAGATTTATCAGAAGTACT+TGG 0.516953 1_1:-17139423 None:intergenic
GATTGTAACTCAAACCAGTC+AGG 0.519297 1_1:-17142286 None:intergenic
AAACTCCATATCAATCGGAT+AGG 0.523237 1_1:-17141037 None:intergenic
TCATACTTCGACATTTGCTA+AGG 0.523457 1_1:+17140407 Msa0011410:CDS
ATCAACCTAGTGAAGCTACC+CGG 0.523575 1_1:+17142059 Msa0011410:three_prime_UTR
AGCAGACATGTAGTTGGTGC+AGG 0.524754 1_1:-17141146 None:intergenic
CGATGAATACTAACCGTGGT+AGG 0.526765 1_1:-17139863 None:intergenic
ATTGCTATATAGAATGTCAC+TGG 0.528652 1_1:+17141194 Msa0011410:CDS
GGTCGAAACTCCATATCAAT+CGG 0.530169 1_1:-17141042 None:intergenic
GTTGATTAAGAATTCCTGAC+TGG 0.530223 1_1:+17142272 Msa0011410:three_prime_UTR
AAGAAGGAAGTGATGCTGCT+GGG 0.530413 1_1:-17140142 None:intergenic
TTTCACAAAACAGATTGTCA+TGG 0.531019 1_1:+17140320 Msa0011410:intron
TCTAAAGCGCCACTAAGTAA+AGG 0.531979 1_1:+17138477 Msa0011410:CDS
CATTTACAGAGCCAAGATGA+AGG 0.535455 1_1:-17139822 None:intergenic
TCGAAGCCCGGGAAATTGAA+AGG 0.535602 1_1:+17141096 Msa0011410:CDS
CATTCCCGGGTAGCTTCACT+AGG 0.537575 1_1:-17142064 None:intergenic
AGTACTTAGATTGGCGAGCT+CGG 0.538321 1_1:+17138550 Msa0011410:CDS
AAAGAAGGAAGTGATGCTGC+TGG 0.539768 1_1:-17140143 None:intergenic
CCTATGACAAGCTTGGAGTA+AGG 0.541938 1_1:+17141852 Msa0011410:CDS
GGTTTCACCATCTTAGATGG+TGG 0.543297 1_1:+17142195 Msa0011410:three_prime_UTR
AGGGTAAGCAGACATGTAGT+TGG 0.544078 1_1:-17141152 None:intergenic
CCATTGGGATTTCGAAGCCC+GGG 0.544164 1_1:+17141085 Msa0011410:CDS
TGGAAGAATTGGTAAATGAC+AGG 0.544909 1_1:+17139352 Msa0011410:CDS
GGGATGATCTGGATTTGGCC+TGG 0.548326 1_1:+17140110 Msa0011410:CDS
CATACTTCGACATTTGCTAA+GGG 0.548563 1_1:+17140408 Msa0011410:CDS
CATATCAACACAACATTCCC+GGG 0.548627 1_1:-17142077 None:intergenic
AACTCCATATCAATCGGATA+GGG 0.548896 1_1:-17141036 None:intergenic
CCCGGGCTTCGAAATCCCAA+TGG 0.553272 1_1:-17141085 None:intergenic
CTTCGACATTTGCTAAGGGA+TGG 0.553640 1_1:+17140412 Msa0011410:CDS
AAAAGGCATATGCTTAAGAA+GGG 0.554581 1_1:-17141226 None:intergenic
ATCAGAAGTACTTGGAGAAG+AGG 0.554772 1_1:-17139415 None:intergenic
CTGTACATACTGAAAGAAGA+AGG 0.555644 1_1:+17139442 Msa0011410:CDS
CCAGTTACCTATGACAAGCT+TGG 0.556416 1_1:+17141845 Msa0011410:CDS
GCTCGTGAATTCAAGTCGAT+TGG 0.558329 1_1:+17139124 Msa0011410:CDS
ATTAGCAGAAGCACACAGAC+AGG 0.563331 1_1:+17139183 Msa0011410:CDS
TGACTTAAAGGATGATTCCA+TGG 0.565498 1_1:+17139554 Msa0011410:CDS
TATACCACCACCATCTAAGA+TGG 0.570781 1_1:-17142202 None:intergenic
ATTTACAGAGCCAAGATGAA+GGG 0.571447 1_1:-17139821 None:intergenic
GAGGATCTACGGCTAGTAGT+TGG 0.571790 1_1:+17141779 Msa0011410:CDS
AGAAGGAAGTGATGCTGCTG+GGG 0.573018 1_1:-17140141 None:intergenic
GGCTGGGAATATACGACAGA+CGG 0.577816 1_1:+17140014 Msa0011410:intron
TTCCAAGCTTGACACCAAAA+GGG 0.583881 1_1:+17137386 Msa0011410:CDS
AGCAGACAAGAAAAGTGCGT+GGG 0.586221 1_1:+17138425 Msa0011410:CDS
TTCAAGCCATAGAAGTAGCT+AGG 0.586372 1_1:+17138517 Msa0011410:CDS
TATCCTTGCAGACCAGATGC+CGG 0.588286 1_1:-17141006 None:intergenic
ACTTATTAAATACCTCGGCA+TGG 0.591232 1_1:-17140190 None:intergenic
TTCCCTATTCCAGATCCCAA+TGG 0.592203 1_1:+17139711 Msa0011410:intron
CATCTTGGCTCTGTAAATGA+GGG 0.592271 1_1:+17139826 Msa0011410:CDS
AGCCATGAAGTTCTAATGCA+AGG 0.595362 1_1:-17142032 None:intergenic
TCAACCTAGTGAAGCTACCC+GGG 0.600321 1_1:+17142060 Msa0011410:three_prime_UTR
GGGCGTGCGCAAGATCCAAA+AGG 0.603628 1_1:-17140377 None:intergenic
GACTTGAATTCACGAGCTAG+AGG 0.604846 1_1:-17139118 None:intergenic
GATGAATACTAACCGTGGTA+GGG 0.606402 1_1:-17139862 None:intergenic
ATGGAACTTCCGGTTGAACA+CGG 0.610594 1_1:+17140339 Msa0011410:CDS
ACACCGGCATCTGGTCTGCA+AGG 0.613320 1_1:+17141003 Msa0011410:CDS
TAATTATTGTGTGTGTTGAA+GGG 0.617559 1_1:-17141920 None:intergenic
TGTTCCTTTGTAGAATGACA+AGG 0.617585 1_1:+17142104 Msa0011410:three_prime_UTR
TTACCCCTAAAGATAACCCA+TGG 0.624924 1_1:-17139748 None:intergenic
TGTCGAAGTATGAGTAAAAG+GGG 0.625361 1_1:-17140397 None:intergenic
ACTTGGAGAAGAGGACGTCT+CGG 0.627193 1_1:-17139406 None:intergenic
TTTACAGAGCCAAGATGAAG+GGG 0.628748 1_1:-17139820 None:intergenic
GAACCATGGGTTATCTTTAG+GGG 0.632156 1_1:+17139745 Msa0011410:CDS
ATGGTTGATAGAACCATACA+AGG 0.639943 1_1:-17141066 None:intergenic
AGTAAGGTATAGGCTTTGGA+GGG 0.643282 1_1:+17141868 Msa0011410:CDS
AAAGGCATATGCTTAAGAAG+GGG 0.645865 1_1:-17141225 None:intergenic
TGGATTTATAGTCCATGCCG+AGG 0.645907 1_1:+17140178 Msa0011410:CDS
GCATGGACTATAAATCCAGA+AGG 0.652893 1_1:-17140173 None:intergenic
GTATAACCACACCCTTAAAG+GGG 0.658662 1_1:+17142220 Msa0011410:three_prime_UTR
GAAGGAAGTGATGCTGCTGG+GGG 0.661858 1_1:-17140140 None:intergenic
ACAACCTTGTCATTCTACAA+AGG 0.662518 1_1:-17142108 None:intergenic
TGGACTATAAATCCAGAAGG+AGG 0.679360 1_1:-17140170 None:intergenic
AAGCAGACAAGAAAAGTGCG+TGG 0.679985 1_1:+17138424 Msa0011410:CDS
AATGACAAGGTTGTACTCTG+AGG 0.680999 1_1:+17142117 Msa0011410:three_prime_UTR
GCAGACAAGAAAAGTGCGTG+GGG 0.696719 1_1:+17138426 Msa0011410:CDS
GTTGATAGAACCATACAAGG+TGG 0.758266 1_1:-17141063 None:intergenic
CGTATCGCATGTCCCTACCA+CGG 0.775057 1_1:+17139850 Msa0011410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATCTAAATTTAATAG+CGG - chr1_1:17137906-17137925 None:intergenic 10.0%
!! ATTAAGTTTAAATTTAACAA+TGG - chr1_1:17138231-17138250 None:intergenic 10.0%
!! TCAAAAGAACAAAAAAAAAA+AGG - chr1_1:17137449-17137468 None:intergenic 15.0%
!! TATAAATTTAGTCACTATTT+AGG + chr1_1:17137653-17137672 Msa0011410:intron 15.0%
!! TTATGAAATGATAGATTTAT+AGG + chr1_1:17140933-17140952 Msa0011410:intron 15.0%
!!! TATCATACATTGTTTCTTTT+AGG + chr1_1:17137858-17137877 Msa0011410:intron 20.0%
!!! GTTTCTTTTAGGTTTTTAAT+AGG + chr1_1:17137869-17137888 Msa0011410:intron 20.0%
!!! TTTATGTTTTTTGTGTAAAC+TGG + chr1_1:17137928-17137947 Msa0011410:intron 20.0%
!!! TTCTTTAGCTTATACTTTTT+TGG + chr1_1:17138346-17138365 Msa0011410:intron 20.0%
!!! TCTTTAGCTTATACTTTTTT+GGG + chr1_1:17138347-17138366 Msa0011410:intron 20.0%
!! TCTTAATAATCAGAAACTAT+TGG + chr1_1:17139072-17139091 Msa0011410:intron 20.0%
!! AGAAATTCTTTAAATTAGGA+TGG - chr1_1:17139512-17139531 None:intergenic 20.0%
!! ATCCTAATTTAAAGAATTTC+TGG + chr1_1:17139511-17139530 Msa0011410:CDS 20.0%
!! TACCAGAAATTCTTTAAATT+AGG - chr1_1:17139516-17139535 None:intergenic 20.0%
!! ACTATACTTATTAAATACCT+CGG - chr1_1:17140198-17140217 None:intergenic 20.0%
!! AAAAAAGAAGATAAAAGTCA+TGG + chr1_1:17140280-17140299 Msa0011410:intron 20.0%
!! TTGAATCATATCACTTATAA+GGG - chr1_1:17140465-17140484 None:intergenic 20.0%
!! ATTGAATCATATCACTTATA+AGG - chr1_1:17140466-17140485 None:intergenic 20.0%
!! TTCATGTATCATAATAACTT+AGG + chr1_1:17140597-17140616 Msa0011410:intron 20.0%
!! TCATGTATCATAATAACTTA+GGG + chr1_1:17140598-17140617 Msa0011410:intron 20.0%
!! TCAAATAAGCAAATTAAAAC+AGG - chr1_1:17140624-17140643 None:intergenic 20.0%
!! TGTTTAAATTGATGAGTATA+TGG + chr1_1:17141416-17141435 Msa0011410:intron 20.0%
!!! ATTTTTCTGAAATCAAGTTA+TGG - chr1_1:17141590-17141609 None:intergenic 20.0%
!! AAAGAGAAAAATATCCTTAT+TGG - chr1_1:17141993-17142012 None:intergenic 20.0%
!! TTCAAACTCGAATTCTAAAA+TGG - chr1_1:17137795-17137814 None:intergenic 25.0%
!! AATATTATGTCCTTTTACTC+TGG + chr1_1:17138100-17138119 Msa0011410:intron 25.0%
! AAACCATACTCTTTCATATA+TGG - chr1_1:17138322-17138341 None:intergenic 25.0%
!! AAAACTTTTCCTTTACTTAG+TGG - chr1_1:17138489-17138508 None:intergenic 25.0%
!! ACTAAGTAAAGGAAAAGTTT+TGG + chr1_1:17138488-17138507 Msa0011410:CDS 25.0%
! ATGATATTGAGTACTTAGAT+TGG + chr1_1:17138541-17138560 Msa0011410:CDS 25.0%
! TCAATTCAAACAAACATAGA+TGG - chr1_1:17138739-17138758 None:intergenic 25.0%
! TGATTATTAAGATAAGCACA+TGG - chr1_1:17139064-17139083 None:intergenic 25.0%
! ATAAGTTAATGAATTACTGC+AGG + chr1_1:17139278-17139297 Msa0011410:intron 25.0%
!! GATACATTTAAGCTTTTCTT+CGG - chr1_1:17139471-17139490 None:intergenic 25.0%
! AAGAAAAGCTTAAATGTATC+AGG + chr1_1:17139471-17139490 Msa0011410:CDS 25.0%
! CAAAAAATGGTATATTTGCA+AGG - chr1_1:17139636-17139655 None:intergenic 25.0%
! AAAGGACTAAAAGCAAAAAA+TGG - chr1_1:17139649-17139668 None:intergenic 25.0%
! AGACGACAAATATCTTTAAA+AGG - chr1_1:17139667-17139686 None:intergenic 25.0%
! TCTCATAGAAATAAATCTGT+TGG - chr1_1:17139961-17139980 None:intergenic 25.0%
! TCAATATGCGAAAATGAAAT+TGG + chr1_1:17140481-17140500 Msa0011410:intron 25.0%
! AATAAGCAGAAAACAACTTA+TGG - chr1_1:17140716-17140735 None:intergenic 25.0%
!!! CTTGTTTTATCTTTTGAAGA+GGG - chr1_1:17141174-17141193 None:intergenic 25.0%
!!! TCTTGTTTTATCTTTTGAAG+AGG - chr1_1:17141175-17141194 None:intergenic 25.0%
! TTGTGAATTGACATCAAAAA+GGG - chr1_1:17141300-17141319 None:intergenic 25.0%
! ATTGTGAATTGACATCAAAA+AGG - chr1_1:17141301-17141320 None:intergenic 25.0%
!! CTTCAAAAGGAACAAATTTT+GGG + chr1_1:17141366-17141385 Msa0011410:intron 25.0%
!!! GAACAAATTTTGGGTATTTA+TGG + chr1_1:17141375-17141394 Msa0011410:intron 25.0%
! GATTATTAACTACTCAACAT+TGG + chr1_1:17141525-17141544 Msa0011410:intron 25.0%
!!! ATCTTTCTTGTGTTTGTTTT+TGG + chr1_1:17141672-17141691 Msa0011410:intron 25.0%
! TAATTATTGTGTGTGTTGAA+GGG - chr1_1:17141923-17141942 None:intergenic 25.0%
! TTAATTATTGTGTGTGTTGA+AGG - chr1_1:17141924-17141943 None:intergenic 25.0%
! ACAGTGTTAAATCCAATTTA+TGG + chr1_1:17142174-17142193 Msa0011410:three_prime_UTR 25.0%
TTGGAAGTTCTACAAAAGAT+AGG - chr1_1:17137372-17137391 None:intergenic 30.0%
!!! GATTAGTTGCTTGTTTTGTA+AGG + chr1_1:17137467-17137486 Msa0011410:intron 30.0%
!! GTAAACTTAGCTTTTAGTCT+TGG + chr1_1:17137565-17137584 Msa0011410:intron 30.0%
!! TGACTTTAAGTTGACTTGTA+AGG + chr1_1:17137601-17137620 Msa0011410:intron 30.0%
!! TTAAGTTGACTTGTAAGGTA+AGG + chr1_1:17137606-17137625 Msa0011410:intron 30.0%
!! TAAGTTGACTTGTAAGGTAA+GGG + chr1_1:17137607-17137626 Msa0011410:intron 30.0%
! CAATTGATCTAAGATAGGTT+CGG + chr1_1:17137766-17137785 Msa0011410:intron 30.0%
TCTAAATTTAATAGCGGCAT+AGG - chr1_1:17137900-17137919 None:intergenic 30.0%
GAACTTAGAGAAACGAATTT+CGG + chr1_1:17138057-17138076 Msa0011410:intron 30.0%
! TAAAAGTACACCAGAGTAAA+AGG - chr1_1:17138113-17138132 None:intergenic 30.0%
ATACTCTTTCATATATGGAC+CGG - chr1_1:17138317-17138336 None:intergenic 30.0%
! AATTAGCTGAAACCTTTTCA+TGG - chr1_1:17138602-17138621 None:intergenic 30.0%
! GGTACTATATAACTTTTGAC+TGG + chr1_1:17138710-17138729 Msa0011410:intron 30.0%
GACATATTTGAGCTTATCTA+TGG + chr1_1:17138757-17138776 Msa0011410:intron 30.0%
CTTATTTCCATAAACTCTCT+AGG + chr1_1:17138853-17138872 Msa0011410:intron 30.0%
ATATAGGGAGAATACAACAA+CGG - chr1_1:17139023-17139042 None:intergenic 30.0%
GATGCTTTATAGCACATATA+GGG - chr1_1:17139038-17139057 None:intergenic 30.0%
TATTAAGATAAGCACATGGT+GGG - chr1_1:17139060-17139079 None:intergenic 30.0%
TTATTAAGATAAGCACATGG+TGG - chr1_1:17139061-17139080 None:intergenic 30.0%
TAATCAGAAACTATTGGTGT+AGG + chr1_1:17139078-17139097 Msa0011410:intron 30.0%
AAACTCTTGCTTCAGATATA+TGG - chr1_1:17139305-17139324 None:intergenic 30.0%
!! ACAGATTTATCAGAAGTACT+TGG - chr1_1:17139426-17139445 None:intergenic 30.0%
CAGAAACTGAAATTTCCTAA+TGG + chr1_1:17139981-17140000 Msa0011410:intron 30.0%
AACTGAAATTTCCTAATGGT+TGG + chr1_1:17139985-17140004 Msa0011410:intron 30.0%
!!! ATTCCATGTTTTGAGAAAGA+AGG + chr1_1:17140089-17140108 Msa0011410:CDS 30.0%
!!! TTCCATGTTTTGAGAAAGAA+GGG + chr1_1:17140090-17140109 Msa0011410:CDS 30.0%
TAAGTATAGTCTGTCCTAAT+AGG + chr1_1:17140208-17140227 Msa0011410:intron 30.0%
CATAGCTTAGAATACCTATT+AGG - chr1_1:17140225-17140244 None:intergenic 30.0%
! TCTGTTTTGTGAAAAGATAC+CGG - chr1_1:17140314-17140333 None:intergenic 30.0%
TTTCACAAAACAGATTGTCA+TGG + chr1_1:17140320-17140339 Msa0011410:intron 30.0%
!! ATTACTTTTGGACAACCTTT+TGG + chr1_1:17140362-17140381 Msa0011410:CDS 30.0%
ATGTCGAAGTATGAGTAAAA+GGG - chr1_1:17140401-17140420 None:intergenic 30.0%
AATGTCGAAGTATGAGTAAA+AGG - chr1_1:17140402-17140421 None:intergenic 30.0%
! GAAGTCTTTTTCTTTTGACA+AGG + chr1_1:17140543-17140562 Msa0011410:intron 30.0%
CTTATTTGAGCTTATTTACC+TGG + chr1_1:17140635-17140654 Msa0011410:intron 30.0%
! ATGATATGCTTTTATGATGC+AGG + chr1_1:17140828-17140847 Msa0011410:intron 30.0%
!!! CTTTGTGAATTTTTTGACAC+CGG + chr1_1:17140987-17141006 Msa0011410:CDS 30.0%
ATTGCTATATAGAATGTCAC+TGG + chr1_1:17141194-17141213 Msa0011410:CDS 30.0%
! AAAAGGCATATGCTTAAGAA+GGG - chr1_1:17141229-17141248 None:intergenic 30.0%
! TAAAAGGCATATGCTTAAGA+AGG - chr1_1:17141230-17141249 None:intergenic 30.0%
! TCTTAAGCATATGCCTTTTA+TGG + chr1_1:17141230-17141249 Msa0011410:CDS 30.0%
!!! TTTTGAAGCGTAACTCATTT+TGG - chr1_1:17141354-17141373 None:intergenic 30.0%
AAAATGAGTTACGCTTCAAA+AGG + chr1_1:17141353-17141372 Msa0011410:intron 30.0%
! GCTTCAAAAGGAACAAATTT+TGG + chr1_1:17141365-17141384 Msa0011410:intron 30.0%
! TATCTGATTTTCTAACCACT+CGG - chr1_1:17141462-17141481 None:intergenic 30.0%
AATCAGATACCATAAGAAAG+TGG + chr1_1:17141473-17141492 Msa0011410:intron 30.0%
GCACATATGATGAATAGTTA+TGG - chr1_1:17141568-17141587 None:intergenic 30.0%
! CTCGTTTAAAACCTAAAGTA+TGG - chr1_1:17141762-17141781 None:intergenic 30.0%
!!! CATACTTTAGGTTTTAAACG+AGG + chr1_1:17141760-17141779 Msa0011410:intron 30.0%
CTTTATTCATTCTCTCTTGT+TGG - chr1_1:17141805-17141824 None:intergenic 30.0%
CAACAAGAGAGAATGAATAA+AGG + chr1_1:17141803-17141822 Msa0011410:CDS 30.0%
! TGAATAAAGGTGCAAATGTA+TGG + chr1_1:17141816-17141835 Msa0011410:CDS 30.0%
ATGCTTCTTAAGATCCAATA+AGG + chr1_1:17141976-17141995 Msa0011410:three_prime_UTR 30.0%
ACACTGTACACAAATTTAAG+AGG - chr1_1:17142161-17142180 None:intergenic 30.0%
AAGATGGTGAAACCATAAAT+TGG - chr1_1:17142189-17142208 None:intergenic 30.0%
CTATGAAAGTGATGAGAAGA+AGG - chr1_1:17137311-17137330 None:intergenic 35.0%
AGAAGAAGAAGAAGAAAGAG+AGG - chr1_1:17137414-17137433 None:intergenic 35.0%
GTGAGTGGTTTAATAATAGG+TGG + chr1_1:17137741-17137760 Msa0011410:intron 35.0%
! TGGCTCAATTGATCTAAGAT+AGG + chr1_1:17137761-17137780 Msa0011410:intron 35.0%
TGAACATAACTCGACAAAGT+TGG + chr1_1:17137811-17137830 Msa0011410:intron 35.0%
! TGACAACTTGTCATCCATTT+TGG - chr1_1:17137997-17138016 None:intergenic 35.0%
AACACTTCGTACAAAACTGT+AGG - chr1_1:17138185-17138204 None:intergenic 35.0%
AAGAAAGTTTCTCCTGTGTA+GGG + chr1_1:17138281-17138300 Msa0011410:intron 35.0%
GGTCCATATATGAAAGAGTA+TGG + chr1_1:17138316-17138335 Msa0011410:intron 35.0%
!!! GCTTATACTTTTTTGGGTTG+TGG + chr1_1:17138353-17138372 Msa0011410:intron 35.0%
!!! TTTTTGGGTTGTGGATTTTC+AGG + chr1_1:17138362-17138381 Msa0011410:intron 35.0%
!!! TTTTGGGTTGTGGATTTTCA+GGG + chr1_1:17138363-17138382 Msa0011410:intron 35.0%
CAGGGTTTGAAAGGTAAATT+TGG + chr1_1:17138381-17138400 Msa0011410:intron 35.0%
GTTGGATCAAATTAGAGACT+TGG + chr1_1:17138689-17138708 Msa0011410:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG - chr1_1:17138839-17138858 None:intergenic 35.0%
AAGCTATCCTAGAGAGTTTA+TGG - chr1_1:17138863-17138882 None:intergenic 35.0%
AAGCTGTTTATCCAAACAAG+TGG + chr1_1:17138985-17139004 Msa0011410:intron 35.0%
AGCTGTTTATCCAAACAAGT+GGG + chr1_1:17138986-17139005 Msa0011410:intron 35.0%
CAAACTTTATCCCACTTGTT+TGG - chr1_1:17138999-17139018 None:intergenic 35.0%
CAAACAAGTGGGATAAAGTT+TGG + chr1_1:17138997-17139016 Msa0011410:intron 35.0%
GGATGCTTTATAGCACATAT+AGG - chr1_1:17139039-17139058 None:intergenic 35.0%
! CAAATCCGAATTTGAAGCTT+TGG - chr1_1:17139244-17139263 None:intergenic 35.0%
TTTGGATAAACTCGCTTACA+TGG + chr1_1:17139332-17139351 Msa0011410:CDS 35.0%
TGGAAGAATTGGTAAATGAC+AGG + chr1_1:17139352-17139371 Msa0011410:CDS 35.0%
CTGTACATACTGAAAGAAGA+AGG + chr1_1:17139442-17139461 Msa0011410:CDS 35.0%
TGACTTAAAGGATGATTCCA+TGG + chr1_1:17139554-17139573 Msa0011410:CDS 35.0%
GTTCCTCAAAACATTCCATT+GGG - chr1_1:17139729-17139748 None:intergenic 35.0%
! GTTATCTTTAGGGGTAAAGA+TGG + chr1_1:17139754-17139773 Msa0011410:CDS 35.0%
!! CATGTATTTTGAACACATCC+AGG - chr1_1:17139784-17139803 None:intergenic 35.0%
ATTTACAGAGCCAAGATGAA+GGG - chr1_1:17139824-17139843 None:intergenic 35.0%
TAGTAGTGAGTTACATGACA+TGG + chr1_1:17139935-17139954 Msa0011410:intron 35.0%
TTTCCTAATGGTTGGATATC+AGG + chr1_1:17139993-17140012 Msa0011410:intron 35.0%
ACATTTAGCATTCGAGTAGA+TGG - chr1_1:17140056-17140075 None:intergenic 35.0%
ATCCCTTCTTTCTCAAAACA+TGG - chr1_1:17140095-17140114 None:intergenic 35.0%
ACTTATTAAATACCTCGGCA+TGG - chr1_1:17140193-17140212 None:intergenic 35.0%
AAAAGTCATGGTTTCTTACC+CGG + chr1_1:17140292-17140311 Msa0011410:intron 35.0%
! CTGTTTTGTGAAAAGATACC+GGG - chr1_1:17140313-17140332 None:intergenic 35.0%
AAAAGTAATCCGTGTTCAAC+CGG - chr1_1:17140351-17140370 None:intergenic 35.0%
TGTCGAAGTATGAGTAAAAG+GGG - chr1_1:17140400-17140419 None:intergenic 35.0%
! TCATACTTCGACATTTGCTA+AGG + chr1_1:17140407-17140426 Msa0011410:CDS 35.0%
! CATACTTCGACATTTGCTAA+GGG + chr1_1:17140408-17140427 Msa0011410:CDS 35.0%
GGTATAAACGAAACAAACCT+AGG - chr1_1:17140444-17140463 None:intergenic 35.0%
TTATTTCCATGAGTTCTCCA+AGG + chr1_1:17140731-17140750 Msa0011410:intron 35.0%
ATTTACATAAGCTGCTACCT+TGG - chr1_1:17140751-17140770 None:intergenic 35.0%
GCGCAAATCAGAAATATCTA+AGG - chr1_1:17140874-17140893 None:intergenic 35.0%
AACTCCATATCAATCGGATA+GGG - chr1_1:17141039-17141058 None:intergenic 35.0%
AAACTCCATATCAATCGGAT+AGG - chr1_1:17141040-17141059 None:intergenic 35.0%
!! ATGGTTGATAGAACCATACA+AGG - chr1_1:17141069-17141088 None:intergenic 35.0%
! TGTATGGTTCTATCAACCAT+TGG + chr1_1:17141069-17141088 Msa0011410:CDS 35.0%
! GTATGGTTCTATCAACCATT+GGG + chr1_1:17141070-17141089 Msa0011410:CDS 35.0%
! AAAGGCATATGCTTAAGAAG+GGG - chr1_1:17141228-17141247 None:intergenic 35.0%
! TGCCTTTTATGGAACATCTA+TGG + chr1_1:17141241-17141260 Msa0011410:CDS 35.0%
CTCCATAGATGTTCCATAAA+AGG - chr1_1:17141246-17141265 None:intergenic 35.0%
! CTTTTATGGAACATCTATGG+AGG + chr1_1:17141244-17141263 Msa0011410:CDS 35.0%
CAATTGATTGTGTTTGAGCA+AGG + chr1_1:17141317-17141336 Msa0011410:intron 35.0%
GTGTTTGAGCAAGGAATAAA+AGG + chr1_1:17141326-17141345 Msa0011410:intron 35.0%
GCACATATACCACTTTCTTA+TGG - chr1_1:17141485-17141504 None:intergenic 35.0%
AAGTGGTATATGTGCCTAAT+TGG + chr1_1:17141490-17141509 Msa0011410:intron 35.0%
!!! AGGTTTTAAACGAGGATCTA+CGG + chr1_1:17141768-17141787 Msa0011410:intron 35.0%
AACCTTGCATTAGAACTTCA+TGG + chr1_1:17142030-17142049 Msa0011410:three_prime_UTR 35.0%
TCATATCAACACAACATTCC+CGG - chr1_1:17142081-17142100 None:intergenic 35.0%
TGTTCCTTTGTAGAATGACA+AGG + chr1_1:17142104-17142123 Msa0011410:three_prime_UTR 35.0%
ACAACCTTGTCATTCTACAA+AGG - chr1_1:17142111-17142130 None:intergenic 35.0%
TATGGTTTCACCATCTTAGA+TGG + chr1_1:17142192-17142211 Msa0011410:three_prime_UTR 35.0%
CATACAACAATCCCCTTTAA+GGG - chr1_1:17142234-17142253 None:intergenic 35.0%
TCATACAACAATCCCCTTTA+AGG - chr1_1:17142235-17142254 None:intergenic 35.0%
GTTGATTAAGAATTCCTGAC+TGG + chr1_1:17142272-17142291 Msa0011410:three_prime_UTR 35.0%
TAAAGCAGAAGCAGTAGCTA+TGG - chr1_1:17137343-17137362 None:intergenic 40.0%
TTCCAAGCTTGACACCAAAA+GGG + chr1_1:17137386-17137405 Msa0011410:CDS 40.0%
!!! AAGAAAGAGAGGTACCCTTT+TGG - chr1_1:17137403-17137422 None:intergenic 40.0%
!!! GTCACAGGTTTTGAGATTGA+GGG - chr1_1:17137717-17137736 None:intergenic 40.0%
!!! AGTCACAGGTTTTGAGATTG+AGG - chr1_1:17137718-17137737 None:intergenic 40.0%
CAATCTCAAAACCTGTGACT+CGG + chr1_1:17137718-17137737 Msa0011410:intron 40.0%
AATCTCAAAACCTGTGACTC+GGG + chr1_1:17137719-17137738 Msa0011410:intron 40.0%
CGGGTGAGTGGTTTAATAAT+AGG + chr1_1:17137738-17137757 Msa0011410:intron 40.0%
ACATAACTCGACAAAGTTGG+AGG + chr1_1:17137814-17137833 Msa0011410:intron 40.0%
ACCCTAATTTGAGCATGCAA+CGG - chr1_1:17138035-17138054 None:intergenic 40.0%
GAAGAAAGTTTCTCCTGTGT+AGG + chr1_1:17138280-17138299 Msa0011410:intron 40.0%
!! GTGGATTTTCAGGGTTTGAA+AGG + chr1_1:17138372-17138391 Msa0011410:intron 40.0%
!! TTTGGAGTGTTTGCTGTGTT+TGG + chr1_1:17138399-17138418 Msa0011410:CDS 40.0%
! TCTAAAGCGCCACTAAGTAA+AGG + chr1_1:17138477-17138496 Msa0011410:CDS 40.0%
TTCAAGCCATAGAAGTAGCT+AGG + chr1_1:17138517-17138536 Msa0011410:CDS 40.0%
ATCATGCCTAGCTACTTCTA+TGG - chr1_1:17138526-17138545 None:intergenic 40.0%
! TAGCTGAAACCTTTTCATGG+AGG - chr1_1:17138599-17138618 None:intergenic 40.0%
GTCTCTAATTTGATCCAACG+AGG - chr1_1:17138688-17138707 None:intergenic 40.0%
TAAGCCCTTGTGAGACTATT+TGG + chr1_1:17138783-17138802 Msa0011410:intron 40.0%
AAGCCCTTGTGAGACTATTT+GGG + chr1_1:17138784-17138803 Msa0011410:intron 40.0%
TCTCCCAAATAGTCTCACAA+GGG - chr1_1:17138790-17138809 None:intergenic 40.0%
TCAGAAACTATTGGTGTAGG+TGG + chr1_1:17139081-17139100 Msa0011410:intron 40.0%
ACCATGAAAAAGGATCTAGC+TGG + chr1_1:17139148-17139167 Msa0011410:CDS 40.0%
CCATGAAAAAGGATCTAGCT+GGG + chr1_1:17139149-17139168 Msa0011410:CDS 40.0%
AGCCACCAAAGCTTCAAATT+CGG + chr1_1:17139236-17139255 Msa0011410:intron 40.0%
! ATCCGAATTTGAAGCTTTGG+TGG - chr1_1:17139241-17139260 None:intergenic 40.0%
AGCAAGAGTTTCTACTGCTT+TGG + chr1_1:17139314-17139333 Msa0011410:CDS 40.0%
ACTCGCTTACATGGAAGAAT+TGG + chr1_1:17139341-17139360 Msa0011410:CDS 40.0%
!! ATCAGAAGTACTTGGAGAAG+AGG - chr1_1:17139418-17139437 None:intergenic 40.0%
TTAGGATGGTATGACTGAAC+TGG - chr1_1:17139498-17139517 None:intergenic 40.0%
!! TGCTTTCTCTGCTGACTTAA+AGG + chr1_1:17139542-17139561 Msa0011410:CDS 40.0%
GGATTGATATCGACATACCA+TGG - chr1_1:17139574-17139593 None:intergenic 40.0%
! TTCCATTGGGATCTGGAATA+GGG - chr1_1:17139716-17139735 None:intergenic 40.0%
! ATTCCATTGGGATCTGGAAT+AGG - chr1_1:17139717-17139736 None:intergenic 40.0%
CAAAACATTCCATTGGGATC+TGG - chr1_1:17139723-17139742 None:intergenic 40.0%
! GATCCCAATGGAATGTTTTG+AGG + chr1_1:17139723-17139742 Msa0011410:intron 40.0%
GGTTCCTCAAAACATTCCAT+TGG - chr1_1:17139730-17139749 None:intergenic 40.0%
!!! TGGAATGTTTTGAGGAACCA+TGG + chr1_1:17139731-17139750 Msa0011410:CDS 40.0%
!!! GGAATGTTTTGAGGAACCAT+GGG + chr1_1:17139732-17139751 Msa0011410:CDS 40.0%
! AGGAACCATGGGTTATCTTT+AGG + chr1_1:17139743-17139762 Msa0011410:CDS 40.0%
! GGAACCATGGGTTATCTTTA+GGG + chr1_1:17139744-17139763 Msa0011410:CDS 40.0%
! GAACCATGGGTTATCTTTAG+GGG + chr1_1:17139745-17139764 Msa0011410:CDS 40.0%
TTACCCCTAAAGATAACCCA+TGG - chr1_1:17139751-17139770 None:intergenic 40.0%
TTTACAGAGCCAAGATGAAG+GGG - chr1_1:17139823-17139842 None:intergenic 40.0%
CATTTACAGAGCCAAGATGA+AGG - chr1_1:17139825-17139844 None:intergenic 40.0%
!! TCATCTTGGCTCTGTAAATG+AGG + chr1_1:17139825-17139844 Msa0011410:CDS 40.0%
!! CATCTTGGCTCTGTAAATGA+GGG + chr1_1:17139826-17139845 Msa0011410:CDS 40.0%
GATGAATACTAACCGTGGTA+GGG - chr1_1:17139865-17139884 None:intergenic 40.0%
CTACCACGGTTAGTATTCAT+CGG + chr1_1:17139864-17139883 Msa0011410:intron 40.0%
TAATGGTTGGATATCAGGCT+GGG + chr1_1:17139998-17140017 Msa0011410:intron 40.0%
TTGAGAAAGAAGGGATGATC+TGG + chr1_1:17140099-17140118 Msa0011410:CDS 40.0%
AAGAAGGGATGATCTGGATT+TGG + chr1_1:17140105-17140124 Msa0011410:CDS 40.0%
TGGACTATAAATCCAGAAGG+AGG - chr1_1:17140173-17140192 None:intergenic 40.0%
! GCATGGACTATAAATCCAGA+AGG - chr1_1:17140176-17140195 None:intergenic 40.0%
ACAGATTGTCATGGAACTTC+CGG + chr1_1:17140329-17140348 Msa0011410:intron 40.0%
!! GGTTGAACACGGATTACTTT+TGG + chr1_1:17140350-17140369 Msa0011410:CDS 40.0%
!!! AATTTTTTGACACCGGCATC+TGG + chr1_1:17140994-17141013 Msa0011410:CDS 40.0%
ATCTGGTCTGCAAGGATATT+GGG + chr1_1:17141011-17141030 Msa0011410:CDS 40.0%
GGTCGAAACTCCATATCAAT+CGG - chr1_1:17141045-17141064 None:intergenic 40.0%
! GTTGATAGAACCATACAAGG+TGG - chr1_1:17141066-17141085 None:intergenic 40.0%
CTTTGTCCTTTCAATTTCCC+GGG - chr1_1:17141105-17141124 None:intergenic 40.0%
GCTTTGTCCTTTCAATTTCC+CGG - chr1_1:17141106-17141125 None:intergenic 40.0%
CAGGTGTGTTGAACATTCTT+TGG - chr1_1:17141130-17141149 None:intergenic 40.0%
TCTCCATCGAAGAACCAATT+AGG - chr1_1:17141507-17141526 None:intergenic 40.0%
ACAAGCTTGGAGTAAGGTAT+AGG + chr1_1:17141858-17141877 Msa0011410:CDS 40.0%
TTGGAGTAAGGTATAGGCTT+TGG + chr1_1:17141864-17141883 Msa0011410:CDS 40.0%
!! AGTAAGGTATAGGCTTTGGA+GGG + chr1_1:17141868-17141887 Msa0011410:CDS 40.0%
! AGCCATGAAGTTCTAATGCA+AGG - chr1_1:17142035-17142054 None:intergenic 40.0%
CATATCAACACAACATTCCC+GGG - chr1_1:17142080-17142099 None:intergenic 40.0%
AATGACAAGGTTGTACTCTG+AGG + chr1_1:17142117-17142136 Msa0011410:three_prime_UTR 40.0%
TATACCACCACCATCTAAGA+TGG - chr1_1:17142205-17142224 None:intergenic 40.0%
TGGTATAACCACACCCTTAA+AGG + chr1_1:17142218-17142237 Msa0011410:three_prime_UTR 40.0%
GGTATAACCACACCCTTAAA+GGG + chr1_1:17142219-17142238 Msa0011410:three_prime_UTR 40.0%
GTATAACCACACCCTTAAAG+GGG + chr1_1:17142220-17142239 Msa0011410:three_prime_UTR 40.0%
GATTGTAACTCAAACCAGTC+AGG - chr1_1:17142289-17142308 None:intergenic 40.0%
AGCAGTAGCTATGGCATTCA+TGG - chr1_1:17137334-17137353 None:intergenic 45.0%
CTTCCAAGCTTGACACCAAA+AGG + chr1_1:17137385-17137404 Msa0011410:CDS 45.0%
!!! TACCCTTTTGGTGTCAAGCT+TGG - chr1_1:17137391-17137410 None:intergenic 45.0%
!! TCATCCATTTTGGTCCCACA+AGG - chr1_1:17137987-17138006 None:intergenic 45.0%
TGCAACGGCGTTAAAACTCT+TGG - chr1_1:17138020-17138039 None:intergenic 45.0%
GCCGTTGCATGCTCAAATTA+GGG + chr1_1:17138031-17138050 Msa0011410:intron 45.0%
TGTGTAGGGTCTACATCTTC+CGG + chr1_1:17138295-17138314 Msa0011410:intron 45.0%
! AAGCAGACAAGAAAAGTGCG+TGG + chr1_1:17138424-17138443 Msa0011410:CDS 45.0%
! AGCAGACAAGAAAAGTGCGT+GGG + chr1_1:17138425-17138444 Msa0011410:CDS 45.0%
GGGTGCGATATTTGATGTAC+AGG + chr1_1:17138446-17138465 Msa0011410:CDS 45.0%
! CTTAGTGGCGCTTTAGATCT+TGG - chr1_1:17138474-17138493 None:intergenic 45.0%
AGTACTTAGATTGGCGAGCT+CGG + chr1_1:17138550-17138569 Msa0011410:CDS 45.0%
!! CTTTTCATGGAGGAGCATGA+TGG - chr1_1:17138589-17138608 None:intergenic 45.0%
CATCATGCTCCTCCATGAAA+AGG + chr1_1:17138587-17138606 Msa0011410:CDS 45.0%
CTCTCCCAAATAGTCTCACA+AGG - chr1_1:17138791-17138810 None:intergenic 45.0%
GACTTGAATTCACGAGCTAG+AGG - chr1_1:17139121-17139140 None:intergenic 45.0%
GCTCGTGAATTCAAGTCGAT+TGG + chr1_1:17139124-17139143 Msa0011410:CDS 45.0%
GTCGATTGGCACCATGAAAA+AGG + chr1_1:17139138-17139157 Msa0011410:CDS 45.0%
!! CCCAGCTAGATCCTTTTTCA+TGG - chr1_1:17139152-17139171 None:intergenic 45.0%
! ATTAGCAGAAGCACACAGAC+AGG + chr1_1:17139183-17139202 Msa0011410:CDS 45.0%
AAGTCAGCAGAGAAAGCAAC+AGG - chr1_1:17139540-17139559 None:intergenic 45.0%
! ATTGGGATCTGGAATAGGGA+AGG - chr1_1:17139712-17139731 None:intergenic 45.0%
TTCCCTATTCCAGATCCCAA+TGG + chr1_1:17139711-17139730 Msa0011410:intron 45.0%
CGATGAATACTAACCGTGGT+AGG - chr1_1:17139866-17139885 None:intergenic 45.0%
GTTCCGATGAATACTAACCG+TGG - chr1_1:17139870-17139889 None:intergenic 45.0%
CAGCCTGATATCCAACCATT+AGG - chr1_1:17139999-17140018 None:intergenic 45.0%
CTAATGGTTGGATATCAGGC+TGG + chr1_1:17139997-17140016 Msa0011410:intron 45.0%
AAGAAGGAAGTGATGCTGCT+GGG - chr1_1:17140145-17140164 None:intergenic 45.0%
AAAGAAGGAAGTGATGCTGC+TGG - chr1_1:17140146-17140165 None:intergenic 45.0%
CCAGAAGGAGGTAGTAAAGA+AGG - chr1_1:17140161-17140180 None:intergenic 45.0%
CCTTCTTTACTACCTCCTTC+TGG + chr1_1:17140158-17140177 Msa0011410:CDS 45.0%
TGGATTTATAGTCCATGCCG+AGG + chr1_1:17140178-17140197 Msa0011410:CDS 45.0%
ATGGAACTTCCGGTTGAACA+CGG + chr1_1:17140339-17140358 Msa0011410:CDS 45.0%
! CTTCGACATTTGCTAAGGGA+TGG + chr1_1:17140412-17140431 Msa0011410:CDS 45.0%
TTACCTGGCATAAGCACTTG+TGG + chr1_1:17140650-17140669 Msa0011410:intron 45.0%
TACCTGGCATAAGCACTTGT+GGG + chr1_1:17140651-17140670 Msa0011410:intron 45.0%
TAAGCACTTGTGGGACTGTT+TGG + chr1_1:17140660-17140679 Msa0011410:intron 45.0%
CATCTGGTCTGCAAGGATAT+TGG + chr1_1:17141010-17141029 Msa0011410:CDS 45.0%
GGATCCCTATCCGATTGATA+TGG + chr1_1:17141032-17141051 Msa0011410:CDS 45.0%
AGGGTAAGCAGACATGTAGT+TGG - chr1_1:17141155-17141174 None:intergenic 45.0%
!!! ATGGAGGCATTTTGCAGAAC+AGG + chr1_1:17141260-17141279 Msa0011410:CDS 45.0%
TAACCACTCGGACAAATCAC+AGG - chr1_1:17141450-17141469 None:intergenic 45.0%
! GTGCCTAATTGGTTCTTCGA+TGG + chr1_1:17141501-17141520 Msa0011410:intron 45.0%
CCAAGCTTGTCATAGGTAAC+TGG - chr1_1:17141848-17141867 None:intergenic 45.0%
CCAGTTACCTATGACAAGCT+TGG + chr1_1:17141845-17141864 Msa0011410:CDS 45.0%
CCTTACTCCAAGCTTGTCAT+AGG - chr1_1:17141855-17141874 None:intergenic 45.0%
CCTATGACAAGCTTGGAGTA+AGG + chr1_1:17141852-17141871 Msa0011410:CDS 45.0%
! GAGTAAGGTATAGGCTTTGG+AGG + chr1_1:17141867-17141886 Msa0011410:CDS 45.0%
TTGGAGGGATGCATTGGAAA+AGG + chr1_1:17141883-17141902 Msa0011410:CDS 45.0%
TGGAGGGATGCATTGGAAAA+GGG + chr1_1:17141884-17141903 Msa0011410:CDS 45.0%
ATCAACCTAGTGAAGCTACC+CGG + chr1_1:17142059-17142078 Msa0011410:three_prime_UTR 45.0%
GGTTTCACCATCTTAGATGG+TGG + chr1_1:17142195-17142214 Msa0011410:three_prime_UTR 45.0%
! TTCACCATCTTAGATGGTGG+TGG + chr1_1:17142198-17142217 Msa0011410:three_prime_UTR 45.0%
! AACAATCCCCTTTAAGGGTG+TGG - chr1_1:17142229-17142248 None:intergenic 45.0%
!!! AATCATTTTTTTAAATAAAA+AGG - chr1_1:17139595-17139614 None:intergenic 5.0%
ACTCGACAAAGTTGGAGGTG+TGG + chr1_1:17137819-17137838 Msa0011410:intron 50.0%
CGCCGTTGCATGCTCAAATT+AGG + chr1_1:17138030-17138049 Msa0011410:intron 50.0%
GGAAGATGTAGACCCTACAC+AGG - chr1_1:17138296-17138315 None:intergenic 50.0%
! GCAGACAAGAAAAGTGCGTG+GGG + chr1_1:17138426-17138445 Msa0011410:CDS 50.0%
AAAGGATCTAGCTGGGTTGC+AGG + chr1_1:17139156-17139175 Msa0011410:CDS 50.0%
ACTTGGAGAAGAGGACGTCT+CGG - chr1_1:17139409-17139428 None:intergenic 50.0%
AGGGGTAAAGATGGCAAACC+TGG + chr1_1:17139763-17139782 Msa0011410:CDS 50.0%
AGAGCATGTCCCCTTCATCT+TGG + chr1_1:17139811-17139830 Msa0011410:CDS 50.0%
GGCTGGGAATATACGACAGA+CGG + chr1_1:17140014-17140033 Msa0011410:intron 50.0%
AGAAGGAAGTGATGCTGCTG+GGG - chr1_1:17140144-17140163 None:intergenic 50.0%
! CTAAGGGATGGAGTGTTCCT+AGG + chr1_1:17140424-17140443 Msa0011410:CDS 50.0%
CTGCTACCTTGGAGAACTCA+TGG - chr1_1:17140740-17140759 None:intergenic 50.0%
TATCCTTGCAGACCAGATGC+CGG - chr1_1:17141009-17141028 None:intergenic 50.0%
GGAGTTTCGACCACCTTGTA+TGG + chr1_1:17141053-17141072 Msa0011410:CDS 50.0%
ACCATTGGGATTTCGAAGCC+CGG + chr1_1:17141084-17141103 Msa0011410:CDS 50.0%
TCGAAGCCCGGGAAATTGAA+AGG + chr1_1:17141096-17141115 Msa0011410:CDS 50.0%
! AGCAGACATGTAGTTGGTGC+AGG - chr1_1:17141149-17141168 None:intergenic 50.0%
CACTCGGACAAATCACAGGT+TGG - chr1_1:17141446-17141465 None:intergenic 50.0%
! CAACCTGTGATTTGTCCGAG+TGG + chr1_1:17141444-17141463 Msa0011410:intron 50.0%
GAGGATCTACGGCTAGTAGT+TGG + chr1_1:17141779-17141798 Msa0011410:CDS 50.0%
!! TAGGCTTTGGAGGGATGCAT+TGG + chr1_1:17141877-17141896 Msa0011410:CDS 50.0%
TCAACCTAGTGAAGCTACCC+GGG + chr1_1:17142060-17142079 Msa0011410:three_prime_UTR 50.0%
! AAACCTGTGACTCGGGTGAG+TGG + chr1_1:17137726-17137745 Msa0011410:intron 55.0%
AAACCACTCACCCGAGTCAC+AGG - chr1_1:17137732-17137751 None:intergenic 55.0%
GATTACGCAGTTGCGTGCGA+AGG - chr1_1:17137957-17137976 None:intergenic 55.0%
! CGTAATCCCTCGAGCCTTGT+GGG + chr1_1:17137970-17137989 Msa0011410:intron 55.0%
TTTGGTCCCACAAGGCTCGA+GGG - chr1_1:17137979-17137998 None:intergenic 55.0%
! TTTTGGTCCCACAAGGCTCG+AGG - chr1_1:17137980-17137999 None:intergenic 55.0%
! CGAGCCTTGTGGGACCAAAA+TGG + chr1_1:17137980-17137999 Msa0011410:intron 55.0%
CAGACATGCATGCACCTCGT+TGG + chr1_1:17138671-17138690 Msa0011410:intron 55.0%
CGTATCGCATGTCCCTACCA+CGG + chr1_1:17139850-17139869 Msa0011410:CDS 55.0%
GGGATGATCTGGATTTGGCC+TGG + chr1_1:17140110-17140129 Msa0011410:CDS 55.0%
GAAGGAAGTGATGCTGCTGG+GGG - chr1_1:17140143-17140162 None:intergenic 55.0%
GTCCCACAAGTGCTTATGCC+AGG - chr1_1:17140656-17140675 None:intergenic 55.0%
CCATTGGGATTTCGAAGCCC+GGG + chr1_1:17141085-17141104 Msa0011410:CDS 55.0%
CATTCCCGGGTAGCTTCACT+AGG - chr1_1:17142067-17142086 None:intergenic 55.0%
GCGTAATCCCTCGAGCCTTG+TGG + chr1_1:17137969-17137988 Msa0011410:intron 60.0%
GGGCGTGCGCAAGATCCAAA+AGG - chr1_1:17140380-17140399 None:intergenic 60.0%
ACACCGGCATCTGGTCTGCA+AGG + chr1_1:17141003-17141022 Msa0011410:CDS 60.0%
CCCGGGCTTCGAAATCCCAA+TGG - chr1_1:17141088-17141107 None:intergenic 60.0%
GCTGCTGGGGGATCACTGCC+AGG - chr1_1:17140131-17140150 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 17137251 17142332 17137251 ID=Msa0011410;Name=Msa0011410
chr1_1 mRNA 17137251 17142332 17137251 ID=Msa0011410-mRNA-1;Parent=Msa0011410;Name=Msa0011410-mRNA-1;_AED=0.09;_eAED=0.09;_QI=82|1|1|1|1|1|9|389|531
chr1_1 exon 17137251 17137407 17137251 ID=Msa0011410-mRNA-1:exon:6244;Parent=Msa0011410-mRNA-1
chr1_1 exon 17138384 17138608 17138384 ID=Msa0011410-mRNA-1:exon:6245;Parent=Msa0011410-mRNA-1
chr1_1 exon 17139100 17139204 17139100 ID=Msa0011410-mRNA-1:exon:6246;Parent=Msa0011410-mRNA-1
chr1_1 exon 17139300 17139575 17139300 ID=Msa0011410-mRNA-1:exon:6247;Parent=Msa0011410-mRNA-1
chr1_1 exon 17139724 17139871 17139724 ID=Msa0011410-mRNA-1:exon:6248;Parent=Msa0011410-mRNA-1
chr1_1 exon 17140015 17140199 17140015 ID=Msa0011410-mRNA-1:exon:6249;Parent=Msa0011410-mRNA-1
chr1_1 exon 17140333 17140445 17140333 ID=Msa0011410-mRNA-1:exon:6250;Parent=Msa0011410-mRNA-1
chr1_1 exon 17140987 17141281 17140987 ID=Msa0011410-mRNA-1:exon:6251;Parent=Msa0011410-mRNA-1
chr1_1 exon 17141770 17142332 17141770 ID=Msa0011410-mRNA-1:exon:6252;Parent=Msa0011410-mRNA-1
chr1_1 five_prime_UTR 17137251 17137332 17137251 ID=Msa0011410-mRNA-1:five_prime_utr;Parent=Msa0011410-mRNA-1
chr1_1 CDS 17137333 17137407 17137333 ID=Msa0011410-mRNA-1:cds;Parent=Msa0011410-mRNA-1
chr1_1 CDS 17138384 17138608 17138384 ID=Msa0011410-mRNA-1:cds;Parent=Msa0011410-mRNA-1
chr1_1 CDS 17139100 17139204 17139100 ID=Msa0011410-mRNA-1:cds;Parent=Msa0011410-mRNA-1
chr1_1 CDS 17139300 17139575 17139300 ID=Msa0011410-mRNA-1:cds;Parent=Msa0011410-mRNA-1
chr1_1 CDS 17139724 17139871 17139724 ID=Msa0011410-mRNA-1:cds;Parent=Msa0011410-mRNA-1
chr1_1 CDS 17140015 17140199 17140015 ID=Msa0011410-mRNA-1:cds;Parent=Msa0011410-mRNA-1
chr1_1 CDS 17140333 17140445 17140333 ID=Msa0011410-mRNA-1:cds;Parent=Msa0011410-mRNA-1
chr1_1 CDS 17140987 17141281 17140987 ID=Msa0011410-mRNA-1:cds;Parent=Msa0011410-mRNA-1
chr1_1 CDS 17141770 17141943 17141770 ID=Msa0011410-mRNA-1:cds;Parent=Msa0011410-mRNA-1
chr1_1 three_prime_UTR 17141944 17142332 17141944 ID=Msa0011410-mRNA-1:three_prime_utr;Parent=Msa0011410-mRNA-1
Gene Sequence

>Msa0011410

ATGAATGCCATAGCTACTGCTTCTGCTTTATCTCTTCCTATCTTTTGTAGAACTTCCAAGCTTGACACCAAAAGGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCGATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTTTTGGATGTATTTCAAGCCATAGAAGTAGCTAGGCATGATATTGAGTACTTAGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCGCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGTCCAGTTCAGTCATACCATCCTAATTTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTGCTGACTTAAAGGATGATTCCATGATCCCAATGGAATGTTTTGAGGAACCATGGGTTATCTTTAGGGGTAAAGATGGCAAACCTGGATGTGTTCAAAATACATGTGCACACAGAGCATGTCCCCTTCATCTTGGCTCTGTAAATGAGGGTCGTATCGCATGTCCCTACCACGGCTGGGAATATACGACAGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACACGGATTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGGATTTCGAAGCCCGGGAAATTGAAAGGACAAAGCACCAAAGAATGTTCAACACACCTGCACCAACTACATGTCTGCTTACCCTCTTCAAAAGATAAAACAAGATTGCTATATAGAATGTCACTGGATTTCGCTCCCCTTCTTAAGCATATGCCTTTTATGGAACATCTATGGAGGCATTTTGCAGAACAGGTTTTAAACGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTACCAGTTACCTATGACAAGCTTGGAGTAAGGTATAGGCTTTGGAGGGATGCATTGGAAAAGGGAGATAAGCAACTACCCTTCAACACACACAATAATTAA
Protein sequence

>Msa0011410

MNAIATASALSLPIFCRTSKLDTKRGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVLDVFQAIEVARHDIEYLDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGPVQSYHPNLKNFWYPVAFSADLKDDSMIPMECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIACPYHGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLKGQSTKECSTHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHMPFMEHLWRHFAEQVLNEDLRLVVGQQERMNKGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFNTHNN*