AlfalfaGEDB | Msa0378920

M. sativa cultivar zhongmu-4 / Msa0378920

KEGG: K15382
GO: GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944
PFAM: PF03083.19

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378920	XP_003602778.1	96.753	308	9	1	1	307	1	308	0.0	609

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378920	sp\|O82587\|SWT12_ARATH	55.686	255	93	3	5	259	7	241	1.95e-93	281

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378920	G7J3C8	96.753	308	9	1	1	307	1	308	0.0	609

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0025060	Msa0378920	0.803391	3.565534e-49	-8.615850e-47
Msa0027610	Msa0378920	0.807020	6.198852e-50	-8.615850e-47
Msa0072590	Msa0378920	0.804758	1.852400e-49	-8.615850e-47
Msa0075370	Msa0378920	0.817258	3.619197e-52	-8.615850e-47
Msa0099090	Msa0378920	0.817789	2.748646e-52	-8.615850e-47
Msa0123310	Msa0378920	0.803323	3.682334e-49	-8.615850e-47
Msa0167800	Msa0378920	0.805433	1.338100e-49	-8.615850e-47
Msa0378920	Msa0415910	0.809985	1.443451e-50	-8.615850e-47
Msa0378920	Msa0428530	0.926583	3.840314e-91	-8.615850e-47
Msa0378920	Msa0474870	0.971755	1.151142e-133	-8.615850e-47
Msa0378920	Msa0474890	0.951844	8.649336e-110	-8.615850e-47
Msa0378920	Msa0508000	0.800142	1.655811e-48	-8.615850e-47
Msa0378920	Msa0646180	0.806141	9.502213e-50	-8.615850e-47
Msa0378920	Msa0783680	-0.800591	1.341066e-48	-8.615850e-47
Msa0378920	Msa1147600	0.818277	2.132102e-52	-8.615850e-47
Msa0378920	Msa1203210	0.861430	1.031420e-63	-8.615850e-47
Msa0378920	Msa1255500	0.852583	4.198449e-61	-8.615850e-47
Msa0378920	Msa1295840	0.854671	1.053972e-61	-8.615850e-47
Msa0378920	Msa1359880	0.803184	3.935021e-49	-8.615850e-47
Msa0378920	Msa1441220	0.822211	2.674603e-53	-8.615850e-47
Msa0378920	Msa1465700	-0.817688	2.896367e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378920	MtrunA17_Chr3g0131951	96.753	308	9	1	1	307	63	370	0.0	609
Msa0378920	MtrunA17_Chr8g0386001	64.017	239	86	0	10	248	10	248	6.71e-115	333
Msa0378920	MtrunA17_Chr8g0386011	52.321	237	108	3	1	233	1	236	3.60e-85	256
Msa0378920	MtrunA17_Chr7g0214181	52.941	238	107	2	1	238	1	233	1.46e-81	248
Msa0378920	MtrunA17_Chr7g0214191	46.454	282	133	4	1	282	1	264	2.87e-81	247
Msa0378920	MtrunA17_Chr5g0428281	47.464	276	135	4	1	275	1	267	1.17e-79	243
Msa0378920	MtrunA17_Chr3g0131961	48.052	231	117	3	4	233	5	233	2.09e-75	232
Msa0378920	MtrunA17_Chr7g0215601	50.218	229	112	2	1	228	1	228	2.14e-71	221
Msa0378920	MtrunA17_Chr5g0444031	45.082	244	129	2	8	247	28	270	1.65e-68	214
Msa0378920	MtrunA17_Chr2g0295681	41.148	209	122	1	9	217	5	212	2.74e-49	164
Msa0378920	MtrunA17_Chr2g0278491	40.179	224	126	5	56	275	1	220	1.38e-47	159
Msa0378920	MtrunA17_Chr3g0119951	36.179	246	150	5	11	252	10	252	6.61e-44	150
Msa0378920	MtrunA17_Chr3g0125861	36.161	224	137	4	4	225	2	221	7.27e-42	145
Msa0378920	MtrunA17_Chr8g0388621	33.465	254	160	5	1	251	1	248	2.39e-41	144
Msa0378920	MtrunA17_Chr1g0158931	36.986	219	133	3	8	222	5	222	7.69e-41	142
Msa0378920	MtrunA17_Chr3g0119991	36.481	233	141	5	24	252	2	231	1.07e-40	142
Msa0378920	MtrunA17_Chr6g0450941	38.426	216	127	4	13	223	85	299	2.17e-40	143
Msa0378920	MtrunA17_Chr1g0159431	37.220	223	130	4	10	228	6	222	5.64e-40	140
Msa0378920	MtrunA17_Chr3g0126421	36.255	251	146	9	8	250	5	249	7.90e-37	132
Msa0378920	MtrunA17_Chr3g0126411	35.458	251	148	8	8	250	5	249	2.67e-36	130
Msa0378920	MtrunA17_Chr8g0359261	36.967	211	125	3	11	217	16	222	3.74e-36	130
Msa0378920	MtrunA17_Chr4g0059191	33.014	209	137	2	25	231	1	208	1.20e-35	127
Msa0378920	MtrunA17_Chr6g0450951	39.062	192	113	3	29	217	5	195	1.73e-34	125
Msa0378920	MtrunA17_Chr2g0314571	34.562	217	138	2	11	225	16	230	1.49e-33	123
Msa0378920	MtrunA17_Chr6g0450931	36.000	200	122	4	29	223	5	203	1.73e-32	119

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378920	AT5G23660.1	55.686	255	93	3	5	259	7	241	1.98e-94	281
Msa0378920	AT5G50800.1	51.014	296	131	6	1	288	1	290	7.89e-94	280
Msa0378920	AT3G48740.1	49.827	289	134	4	9	296	11	289	1.80e-90	271
Msa0378920	AT4G25010.1	50.719	278	131	4	5	279	5	279	6.82e-89	267
Msa0378920	AT5G13170.1	45.724	304	148	6	1	304	4	290	1.48e-87	264
Msa0378920	AT5G50790.1	43.197	294	153	5	1	285	1	289	4.44e-81	247
Msa0378920	AT2G39060.1	42.972	249	122	2	8	237	8	255	3.72e-65	206
Msa0378920	AT4G15920.1	36.967	211	133	0	9	219	5	215	1.97e-51	170
Msa0378920	AT3G16690.3	37.220	223	138	2	2	223	33	254	3.40e-51	170
Msa0378920	AT3G16690.1	36.986	219	136	2	6	223	2	219	2.52e-50	166
Msa0378920	AT1G21460.1	40.408	245	130	6	12	254	8	238	1.66e-47	160
Msa0378920	AT4G10850.1	35.268	224	142	2	3	223	4	227	1.13e-43	150
Msa0378920	AT1G66770.1	32.489	237	158	1	13	247	14	250	1.66e-40	142
Msa0378920	AT5G40260.1	39.631	217	125	5	7	218	6	221	2.04e-39	139
Msa0378920	AT5G53190.1	31.119	286	160	8	8	284	5	262	2.98e-39	139
Msa0378920	AT5G62850.1	33.790	219	139	4	1	216	1	216	5.45e-39	137
Msa0378920	AT1G21460.2	43.243	185	101	3	12	194	8	190	3.70e-37	132
Msa0378920	AT3G14770.1	35.945	217	131	4	13	226	18	229	8.75e-35	126
Msa0378920	AT3G28007.1	38.095	210	123	4	13	218	12	218	1.49e-34	126
Msa0378920	AT5G40260.2	40.838	191	107	5	7	192	6	195	3.08e-33	122
Msa0378920	AT5G62850.2	34.973	183	114	3	13	192	12	192	2.83e-32	119
Msa0378920	AT3G16690.2	32.812	192	113	3	6	182	2	192	3.48e-27	105

Find 76 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACATCATTTCTTTGCTTTC+TGG	0.098038	3_1:+79788472	Msa0378920:CDS
CTCAATTCTAGACAAGTTTA+TGG	0.157039	3_1:+79790298	Msa0378920:three_prime_UTR
GAAGGAAGATTTAATTTAAA+AGG	0.168383	3_1:-79788328	None:intergenic
AAGAAGAGTTTCACCCTTCT+TGG	0.240770	3_1:-79788708	None:intergenic
GCACTCACAATAATGCTTAA+AGG	0.256613	3_1:-79789192	None:intergenic
TACACGTACCCTAACTTTCT+TGG	0.259331	3_1:-79788798	None:intergenic
TTATGGAAATTATTATCTTA+TGG	0.274592	3_1:+79790315	Msa0378920:three_prime_UTR
GGGCATATATTATTATAATT+AGG	0.291098	3_1:-79790276	None:intergenic
TACAACTTGTGGGTTAATAT+TGG	0.291724	3_1:-79790381	None:intergenic
CTTACTGCCCCAAGAAAGTT+AGG	0.295172	3_1:+79788789	Msa0378920:CDS
TCTTTCGCCTTTGGAGTTCT+AGG	0.295855	3_1:+79788443	Msa0378920:CDS
ACACGTACCCTAACTTTCTT+GGG	0.302349	3_1:-79788797	None:intergenic
TTGATGAACTTTGTGGGATT+TGG	0.311697	3_1:+79789066	Msa0378920:CDS
TATTGTGACTGTAGAGAAAA+AGG	0.313551	3_1:+79789914	Msa0378920:CDS
AGTTTCACCCTTCTTGGTAT+AGG	0.322134	3_1:-79788702	None:intergenic
AACGTTGTGGGGTTAACATT+TGG	0.325987	3_1:+79789729	Msa0378920:CDS
AGGAAGGAACTCTACACTTT+TGG	0.334515	3_1:-79789345	None:intergenic
TGGTAGCTTCTCATCAATTA+CGG	0.338030	3_1:-79789796	None:intergenic
CACTCACAATAATGCTTAAA+GGG	0.349067	3_1:-79789191	None:intergenic
AGTCATCTATCTTTCGCCTT+TGG	0.350886	3_1:+79788434	Msa0378920:CDS
CACTATTTAGTGCAATGCTT+TGG	0.369787	3_1:+79788669	Msa0378920:CDS
CACACAACCGAATGCATTGA+TGG	0.370212	3_1:-79788735	None:intergenic
GGTAGCTTCTCATCAATTAC+GGG	0.374020	3_1:-79789795	None:intergenic
TTGATGTACTCTAAAGATTA+CGG	0.375925	3_1:+79790343	Msa0378920:three_prime_UTR
GAAGGACGTATCAAGCTTCT+TGG	0.381738	3_1:+79789129	Msa0378920:CDS
AATGTTAACCCCACAACGTT+CGG	0.388997	3_1:-79789726	None:intergenic
CATAAACTTGTCTAGAATTG+AGG	0.394159	3_1:-79790297	None:intergenic
ACAATGTCTCCTTTATGTTC+TGG	0.402350	3_1:-79789816	None:intergenic
CTAAATAGTGCAGCCACATA+TGG	0.415521	3_1:-79788656	None:intergenic
CTTATCACCATCAATGCATT+CGG	0.422646	3_1:+79788728	Msa0378920:CDS
AGGAGAAGTGAAAGTGGAAA+AGG	0.437747	3_1:-79789365	None:intergenic
ATGTTAACCCCACAACGTTC+GGG	0.444928	3_1:-79789725	None:intergenic
ATAAACTTGTCTAGAATTGA+GGG	0.446053	3_1:-79790296	None:intergenic
GGACAGCTCCCGAACGTTGT+GGG	0.447921	3_1:+79789717	Msa0378920:intron
TCCTTCTCTCCCTTCTCACA+AGG	0.455581	3_1:+79788345	Msa0378920:five_prime_UTR
CAGCCACATATGGAATTGAT+TGG	0.459983	3_1:-79788646	None:intergenic
TGATGAGAATGAGAAGAAAC+AGG	0.461226	3_1:+79789959	Msa0378920:CDS
TTACAAATTCGATAAAATGT+TGG	0.461818	3_1:-79788602	None:intergenic
TCCTCATAAGCGCGGTTATG+TGG	0.463599	3_1:+79789387	Msa0378920:CDS
GATTGTGTTGATGAACTTTG+TGG	0.471961	3_1:+79789059	Msa0378920:CDS
ATGAGGAGGAGAAGTGAAAG+TGG	0.474274	3_1:-79789371	None:intergenic
TTTCCAATCAATTCCATATG+TGG	0.478701	3_1:+79788643	Msa0378920:CDS
CCCTTGTGAGAAGGGAGAGA+AGG	0.480289	3_1:-79788346	None:intergenic
GCCACATAACCGCGCTTATG+AGG	0.482912	3_1:-79789388	None:intergenic
GAGAAGCTACCAGAACATAA+AGG	0.487420	3_1:+79789807	Msa0378920:CDS
TCTCTGTTTACATCTACTTG+TGG	0.498460	3_1:+79790195	Msa0378920:three_prime_UTR
GTTAGTGGTTGAGAAATAGT+TGG	0.504921	3_1:+79790056	Msa0378920:exon
CTGAATTATCCCTTGTGAGA+AGG	0.505869	3_1:-79788355	None:intergenic
GCGGTTATGTGGCTGTTGTA+TGG	0.506943	3_1:+79789398	Msa0378920:CDS
TGAATTATCCCTTGTGAGAA+GGG	0.510719	3_1:-79788354	None:intergenic
TGGACAGCTCCCGAACGTTG+TGG	0.525233	3_1:+79789716	Msa0378920:intron
AAAACAGAAGAGAAGGTTAG+TGG	0.526127	3_1:+79790041	Msa0378920:CDS
TTACAGTAACATAGATATCT+CGG	0.536034	3_1:-79789430	None:intergenic
ATTGTGTTGATGAACTTTGT+GGG	0.543350	3_1:+79789060	Msa0378920:CDS
CGCATATAAAGGAGAAGAGA+CGG	0.552967	3_1:+79790146	Msa0378920:three_prime_UTR
GACGTATCAAGCTTCTTGGA+TGG	0.557609	3_1:+79789133	Msa0378920:CDS
CCTTCTCTCCCTTCTCACAA+GGG	0.557625	3_1:+79788346	Msa0378920:five_prime_UTR
TATCAACAAAACAGAAGAGA+AGG	0.559044	3_1:+79790034	Msa0378920:CDS
TTCCTAGCAAAACAAGAAGA+AGG	0.574175	3_1:+79789111	Msa0378920:CDS
TGTAAGAAGAAATCAACAGA+AGG	0.576661	3_1:+79788620	Msa0378920:CDS
GTGGTTGAGAAATAGTTGGC+GGG	0.578004	3_1:+79790060	Msa0378920:exon
GACAGCTCCCGAACGTTGTG+GGG	0.582179	3_1:+79789718	Msa0378920:intron
AGTGGTTGAGAAATAGTTGG+CGG	0.598698	3_1:+79790059	Msa0378920:exon
TTATGTAGATGTCAACATTG+AGG	0.602218	3_1:+79789034	Msa0378920:intron
GAAGTGAAAGTGGAAAAGGA+AGG	0.605323	3_1:-79789361	None:intergenic
GAAAGATAGATGACTGTGGT+GGG	0.607987	3_1:-79788426	None:intergenic
CGAAAGATAGATGACTGTGG+TGG	0.609394	3_1:-79788427	None:intergenic
ATGACTGTGGTGGGACGACA+TGG	0.619238	3_1:-79788417	None:intergenic
ACATAACCGCGCTTATGAGG+AGG	0.633283	3_1:-79789385	None:intergenic
TTACTGCCCCAAGAAAGTTA+GGG	0.638169	3_1:+79788790	Msa0378920:CDS
ACTTCTCCTCCTCATAAGCG+CGG	0.645264	3_1:+79789379	Msa0378920:CDS
AATGTTGCCTAGAACTCCAA+AGG	0.654062	3_1:-79788450	None:intergenic
CACGTACCCTAACTTTCTTG+GGG	0.660388	3_1:-79788796	None:intergenic
ACTCACAATAATGCTTAAAG+GGG	0.675502	3_1:-79789190	None:intergenic
AGTAACTCAAGACAAAACAA+AGG	0.690695	3_1:+79789986	Msa0378920:CDS
AGGCGAAAGATAGATGACTG+TGG	0.756668	3_1:-79788430	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTTACAATTAAATGAAG+TGG	-	chr3_1:79788532-79788551	None:intergenic	15.0%
!!	AAAATAATTAATGTTGATCA+TGG	-	chr3_1:79789003-79789022	None:intergenic	15.0%
!!	AAAATCAATACTACTAAATT+TGG	+	chr3_1:79789492-79789511	Msa0378920:intron	15.0%
!!	CATTTGTATTAATTAATTTC+TGG	+	chr3_1:79789638-79789657	Msa0378920:intron	15.0%
!!!	CAAAATCTTATGTTTTTTTA+TGG	+	chr3_1:79789696-79789715	Msa0378920:intron	15.0%
!!	TTATGGAAATTATTATCTTA+TGG	+	chr3_1:79790315-79790334	Msa0378920:three_prime_UTR	15.0%
!!	AAATTTACAATTAAATGAAG+TGG	-	chr3_1:79788532-79788551	None:intergenic	15.0%
!!	AAAATAATTAATGTTGATCA+TGG	-	chr3_1:79789003-79789022	None:intergenic	15.0%
!!	AAAATCAATACTACTAAATT+TGG	+	chr3_1:79789492-79789511	Msa0378920:intron	15.0%
!!	CATTTGTATTAATTAATTTC+TGG	+	chr3_1:79789638-79789657	Msa0378920:intron	15.0%
!!!	CAAAATCTTATGTTTTTTTA+TGG	+	chr3_1:79789696-79789715	Msa0378920:intron	15.0%
!!	TTATGGAAATTATTATCTTA+TGG	+	chr3_1:79790315-79790334	Msa0378920:three_prime_UTR	15.0%
!!!	GAAGGAAGATTTAATTTAAA+AGG	-	chr3_1:79788331-79788350	None:intergenic	20.0%
!!	TTACAAATTCGATAAAATGT+TGG	-	chr3_1:79788605-79788624	None:intergenic	20.0%
!!	GGGCATATATTATTATAATT+AGG	-	chr3_1:79790279-79790298	None:intergenic	20.0%
!!!	GAAGGAAGATTTAATTTAAA+AGG	-	chr3_1:79788331-79788350	None:intergenic	20.0%
!!	TTACAAATTCGATAAAATGT+TGG	-	chr3_1:79788605-79788624	None:intergenic	20.0%
!!	GGGCATATATTATTATAATT+AGG	-	chr3_1:79790279-79790298	None:intergenic	20.0%
!	ACAAAAATTAAGCTAGAGTT+TGG	+	chr3_1:79788301-79788320	Msa0378920:five_prime_UTR	25.0%
!	ATTATTCTTTCTACTTACAG+TGG	-	chr3_1:79788500-79788519	None:intergenic	25.0%
!	TTTAACATTCCAACAATGTT+GGG	-	chr3_1:79788867-79788886	None:intergenic	25.0%
!	ATTTAACATTCCAACAATGT+TGG	-	chr3_1:79788868-79788887	None:intergenic	25.0%
!!!	TTTTTTTTGACAAAGTTGCT+AGG	+	chr3_1:79788895-79788914	Msa0378920:intron	25.0%
!	TTACAGTAACATAGATATCT+CGG	-	chr3_1:79789433-79789452	None:intergenic	25.0%
!!!	TAGTTGCTATTTTGTCTTTA+TGG	+	chr3_1:79789661-79789680	Msa0378920:intron	25.0%
!!!	ATATTTTGAGACGCATATAA+AGG	+	chr3_1:79790135-79790154	Msa0378920:three_prime_UTR	25.0%
!!	ATAAACTTGTCTAGAATTGA+GGG	-	chr3_1:79790299-79790318	None:intergenic	25.0%
!!	TTGATGTACTCTAAAGATTA+CGG	+	chr3_1:79790343-79790362	Msa0378920:three_prime_UTR	25.0%
!	ACAAAAATTAAGCTAGAGTT+TGG	+	chr3_1:79788301-79788320	Msa0378920:five_prime_UTR	25.0%
!	ATTATTCTTTCTACTTACAG+TGG	-	chr3_1:79788500-79788519	None:intergenic	25.0%
!	TTTAACATTCCAACAATGTT+GGG	-	chr3_1:79788867-79788886	None:intergenic	25.0%
!	ATTTAACATTCCAACAATGT+TGG	-	chr3_1:79788868-79788887	None:intergenic	25.0%
!!!	TTTTTTTTGACAAAGTTGCT+AGG	+	chr3_1:79788895-79788914	Msa0378920:intron	25.0%
!	TTACAGTAACATAGATATCT+CGG	-	chr3_1:79789433-79789452	None:intergenic	25.0%
!!!	TAGTTGCTATTTTGTCTTTA+TGG	+	chr3_1:79789661-79789680	Msa0378920:intron	25.0%
!!!	ATATTTTGAGACGCATATAA+AGG	+	chr3_1:79790135-79790154	Msa0378920:three_prime_UTR	25.0%
!!	ATAAACTTGTCTAGAATTGA+GGG	-	chr3_1:79790299-79790318	None:intergenic	25.0%
!!	TTGATGTACTCTAAAGATTA+CGG	+	chr3_1:79790343-79790362	Msa0378920:three_prime_UTR	25.0%
	TACATCATTTCTTTGCTTTC+TGG	+	chr3_1:79788472-79788491	Msa0378920:CDS	30.0%
	TGTAAGAAGAAATCAACAGA+AGG	+	chr3_1:79788620-79788639	Msa0378920:CDS	30.0%
	TTTCCAATCAATTCCATATG+TGG	+	chr3_1:79788643-79788662	Msa0378920:CDS	30.0%
!	TTTTATGCCTATACCAAGAA+GGG	+	chr3_1:79788695-79788714	Msa0378920:CDS	30.0%
	TTATGTAGATGTCAACATTG+AGG	+	chr3_1:79789034-79789053	Msa0378920:intron	30.0%
!	ATTGTGTTGATGAACTTTGT+GGG	+	chr3_1:79789060-79789079	Msa0378920:CDS	30.0%
	ACTCACAATAATGCTTAAAG+GGG	-	chr3_1:79789193-79789212	None:intergenic	30.0%
	CACTCACAATAATGCTTAAA+GGG	-	chr3_1:79789194-79789213	None:intergenic	30.0%
	AAAAGCTAATTCTAGCATGT+CGG	-	chr3_1:79789233-79789252	None:intergenic	30.0%
	AGGATGATTAAAATCATGCA+TGG	-	chr3_1:79789305-79789324	None:intergenic	30.0%
!!!	TCATCATTTGTTGTTTTGCT+TGG	-	chr3_1:79789870-79789889	None:intergenic	30.0%
	TATTGTGACTGTAGAGAAAA+AGG	+	chr3_1:79789914-79789933	Msa0378920:CDS	30.0%
!!	TTGTTTTGTCTTGAGTTACT+TGG	-	chr3_1:79789986-79790005	None:intergenic	30.0%
	AGTAACTCAAGACAAAACAA+AGG	+	chr3_1:79789986-79790005	Msa0378920:CDS	30.0%
	TATCAACAAAACAGAAGAGA+AGG	+	chr3_1:79790034-79790053	Msa0378920:CDS	30.0%
!	CATAAACTTGTCTAGAATTG+AGG	-	chr3_1:79790300-79790319	None:intergenic	30.0%
	CTCAATTCTAGACAAGTTTA+TGG	+	chr3_1:79790298-79790317	Msa0378920:three_prime_UTR	30.0%
	TACATCATTTCTTTGCTTTC+TGG	+	chr3_1:79788472-79788491	Msa0378920:CDS	30.0%
	TGTAAGAAGAAATCAACAGA+AGG	+	chr3_1:79788620-79788639	Msa0378920:CDS	30.0%
	TTTCCAATCAATTCCATATG+TGG	+	chr3_1:79788643-79788662	Msa0378920:CDS	30.0%
!	TTTTATGCCTATACCAAGAA+GGG	+	chr3_1:79788695-79788714	Msa0378920:CDS	30.0%
	TTATGTAGATGTCAACATTG+AGG	+	chr3_1:79789034-79789053	Msa0378920:intron	30.0%
!	ATTGTGTTGATGAACTTTGT+GGG	+	chr3_1:79789060-79789079	Msa0378920:CDS	30.0%
	ACTCACAATAATGCTTAAAG+GGG	-	chr3_1:79789193-79789212	None:intergenic	30.0%
	CACTCACAATAATGCTTAAA+GGG	-	chr3_1:79789194-79789213	None:intergenic	30.0%
	AAAAGCTAATTCTAGCATGT+CGG	-	chr3_1:79789233-79789252	None:intergenic	30.0%
	AGGATGATTAAAATCATGCA+TGG	-	chr3_1:79789305-79789324	None:intergenic	30.0%
!!!	TCATCATTTGTTGTTTTGCT+TGG	-	chr3_1:79789870-79789889	None:intergenic	30.0%
	TATTGTGACTGTAGAGAAAA+AGG	+	chr3_1:79789914-79789933	Msa0378920:CDS	30.0%
!!	TTGTTTTGTCTTGAGTTACT+TGG	-	chr3_1:79789986-79790005	None:intergenic	30.0%
	AGTAACTCAAGACAAAACAA+AGG	+	chr3_1:79789986-79790005	Msa0378920:CDS	30.0%
	TATCAACAAAACAGAAGAGA+AGG	+	chr3_1:79790034-79790053	Msa0378920:CDS	30.0%
!	CATAAACTTGTCTAGAATTG+AGG	-	chr3_1:79790300-79790319	None:intergenic	30.0%
	CTCAATTCTAGACAAGTTTA+TGG	+	chr3_1:79790298-79790317	Msa0378920:three_prime_UTR	30.0%
	TGAATTATCCCTTGTGAGAA+GGG	-	chr3_1:79788357-79788376	None:intergenic	35.0%
	CACTATTTAGTGCAATGCTT+TGG	+	chr3_1:79788669-79788688	Msa0378920:CDS	35.0%
!	GTTTTATGCCTATACCAAGA+AGG	+	chr3_1:79788694-79788713	Msa0378920:CDS	35.0%
	CTTATCACCATCAATGCATT+CGG	+	chr3_1:79788728-79788747	Msa0378920:CDS	35.0%
	AGTAAGTGACAAAAACTGCA+AGG	-	chr3_1:79788775-79788794	None:intergenic	35.0%
!	GATTGTGTTGATGAACTTTG+TGG	+	chr3_1:79789059-79789078	Msa0378920:CDS	35.0%
	TTGATGAACTTTGTGGGATT+TGG	+	chr3_1:79789066-79789085	Msa0378920:CDS	35.0%
	TTCCTAGCAAAACAAGAAGA+AGG	+	chr3_1:79789111-79789130	Msa0378920:CDS	35.0%
	GCACTCACAATAATGCTTAA+AGG	-	chr3_1:79789195-79789214	None:intergenic	35.0%
	TGGTAGCTTCTCATCAATTA+CGG	-	chr3_1:79789799-79789818	None:intergenic	35.0%
	ACAATGTCTCCTTTATGTTC+TGG	-	chr3_1:79789819-79789838	None:intergenic	35.0%
	TGATGAGAATGAGAAGAAAC+AGG	+	chr3_1:79789959-79789978	Msa0378920:CDS	35.0%
	AAAACAGAAGAGAAGGTTAG+TGG	+	chr3_1:79790041-79790060	Msa0378920:CDS	35.0%
	GTTAGTGGTTGAGAAATAGT+TGG	+	chr3_1:79790056-79790075	Msa0378920:exon	35.0%
	TCTCTGTTTACATCTACTTG+TGG	+	chr3_1:79790195-79790214	Msa0378920:three_prime_UTR	35.0%
	TGAATTATCCCTTGTGAGAA+GGG	-	chr3_1:79788357-79788376	None:intergenic	35.0%
	CACTATTTAGTGCAATGCTT+TGG	+	chr3_1:79788669-79788688	Msa0378920:CDS	35.0%
!	GTTTTATGCCTATACCAAGA+AGG	+	chr3_1:79788694-79788713	Msa0378920:CDS	35.0%
	CTTATCACCATCAATGCATT+CGG	+	chr3_1:79788728-79788747	Msa0378920:CDS	35.0%
	AGTAAGTGACAAAAACTGCA+AGG	-	chr3_1:79788775-79788794	None:intergenic	35.0%
!	GATTGTGTTGATGAACTTTG+TGG	+	chr3_1:79789059-79789078	Msa0378920:CDS	35.0%
	TTGATGAACTTTGTGGGATT+TGG	+	chr3_1:79789066-79789085	Msa0378920:CDS	35.0%
	TTCCTAGCAAAACAAGAAGA+AGG	+	chr3_1:79789111-79789130	Msa0378920:CDS	35.0%
	GCACTCACAATAATGCTTAA+AGG	-	chr3_1:79789195-79789214	None:intergenic	35.0%
	TGGTAGCTTCTCATCAATTA+CGG	-	chr3_1:79789799-79789818	None:intergenic	35.0%
	ACAATGTCTCCTTTATGTTC+TGG	-	chr3_1:79789819-79789838	None:intergenic	35.0%
	TGATGAGAATGAGAAGAAAC+AGG	+	chr3_1:79789959-79789978	Msa0378920:CDS	35.0%
	AAAACAGAAGAGAAGGTTAG+TGG	+	chr3_1:79790041-79790060	Msa0378920:CDS	35.0%
	GTTAGTGGTTGAGAAATAGT+TGG	+	chr3_1:79790056-79790075	Msa0378920:exon	35.0%
	TCTCTGTTTACATCTACTTG+TGG	+	chr3_1:79790195-79790214	Msa0378920:three_prime_UTR	35.0%
	CTGAATTATCCCTTGTGAGA+AGG	-	chr3_1:79788358-79788377	None:intergenic	40.0%
	GAAAGATAGATGACTGTGGT+GGG	-	chr3_1:79788429-79788448	None:intergenic	40.0%
	AGTCATCTATCTTTCGCCTT+TGG	+	chr3_1:79788434-79788453	Msa0378920:CDS	40.0%
	AATGTTGCCTAGAACTCCAA+AGG	-	chr3_1:79788453-79788472	None:intergenic	40.0%
	CAGCCACATATGGAATTGAT+TGG	-	chr3_1:79788649-79788668	None:intergenic	40.0%
	CTAAATAGTGCAGCCACATA+TGG	-	chr3_1:79788659-79788678	None:intergenic	40.0%
	AGTTTCACCCTTCTTGGTAT+AGG	-	chr3_1:79788705-79788724	None:intergenic	40.0%
	AAGAAGAGTTTCACCCTTCT+TGG	-	chr3_1:79788711-79788730	None:intergenic	40.0%
	TTACTGCCCCAAGAAAGTTA+GGG	+	chr3_1:79788790-79788809	Msa0378920:CDS	40.0%
	ACACGTACCCTAACTTTCTT+GGG	-	chr3_1:79788800-79788819	None:intergenic	40.0%
	TACACGTACCCTAACTTTCT+TGG	-	chr3_1:79788801-79788820	None:intergenic	40.0%
	AGCTAAAGTCCCAACATTGT+TGG	+	chr3_1:79788855-79788874	Msa0378920:intron	40.0%
!!!	GTCCTTCTTCTTGTTTTGCT+AGG	-	chr3_1:79789116-79789135	None:intergenic	40.0%
!	AGGAAGGAACTCTACACTTT+TGG	-	chr3_1:79789348-79789367	None:intergenic	40.0%
	GAAGTGAAAGTGGAAAAGGA+AGG	-	chr3_1:79789364-79789383	None:intergenic	40.0%
	AGGAGAAGTGAAAGTGGAAA+AGG	-	chr3_1:79789368-79789387	None:intergenic	40.0%
	AATGTTAACCCCACAACGTT+CGG	-	chr3_1:79789729-79789748	None:intergenic	40.0%
	AACGTTGTGGGGTTAACATT+TGG	+	chr3_1:79789729-79789748	Msa0378920:CDS	40.0%
	GGTAGCTTCTCATCAATTAC+GGG	-	chr3_1:79789798-79789817	None:intergenic	40.0%
	GAGAAGCTACCAGAACATAA+AGG	+	chr3_1:79789807-79789826	Msa0378920:CDS	40.0%
	AGTGGTTGAGAAATAGTTGG+CGG	+	chr3_1:79790059-79790078	Msa0378920:exon	40.0%
	CGCATATAAAGGAGAAGAGA+CGG	+	chr3_1:79790146-79790165	Msa0378920:three_prime_UTR	40.0%
	CTGAATTATCCCTTGTGAGA+AGG	-	chr3_1:79788358-79788377	None:intergenic	40.0%
	GAAAGATAGATGACTGTGGT+GGG	-	chr3_1:79788429-79788448	None:intergenic	40.0%
	AGTCATCTATCTTTCGCCTT+TGG	+	chr3_1:79788434-79788453	Msa0378920:CDS	40.0%
	AATGTTGCCTAGAACTCCAA+AGG	-	chr3_1:79788453-79788472	None:intergenic	40.0%
	CAGCCACATATGGAATTGAT+TGG	-	chr3_1:79788649-79788668	None:intergenic	40.0%
	CTAAATAGTGCAGCCACATA+TGG	-	chr3_1:79788659-79788678	None:intergenic	40.0%
	AGTTTCACCCTTCTTGGTAT+AGG	-	chr3_1:79788705-79788724	None:intergenic	40.0%
	AAGAAGAGTTTCACCCTTCT+TGG	-	chr3_1:79788711-79788730	None:intergenic	40.0%
	TTACTGCCCCAAGAAAGTTA+GGG	+	chr3_1:79788790-79788809	Msa0378920:CDS	40.0%
	ACACGTACCCTAACTTTCTT+GGG	-	chr3_1:79788800-79788819	None:intergenic	40.0%
	TACACGTACCCTAACTTTCT+TGG	-	chr3_1:79788801-79788820	None:intergenic	40.0%
	AGCTAAAGTCCCAACATTGT+TGG	+	chr3_1:79788855-79788874	Msa0378920:intron	40.0%
!!!	GTCCTTCTTCTTGTTTTGCT+AGG	-	chr3_1:79789116-79789135	None:intergenic	40.0%
!	AGGAAGGAACTCTACACTTT+TGG	-	chr3_1:79789348-79789367	None:intergenic	40.0%
	GAAGTGAAAGTGGAAAAGGA+AGG	-	chr3_1:79789364-79789383	None:intergenic	40.0%
	AGGAGAAGTGAAAGTGGAAA+AGG	-	chr3_1:79789368-79789387	None:intergenic	40.0%
	AATGTTAACCCCACAACGTT+CGG	-	chr3_1:79789729-79789748	None:intergenic	40.0%
	AACGTTGTGGGGTTAACATT+TGG	+	chr3_1:79789729-79789748	Msa0378920:CDS	40.0%
	GGTAGCTTCTCATCAATTAC+GGG	-	chr3_1:79789798-79789817	None:intergenic	40.0%
	GAGAAGCTACCAGAACATAA+AGG	+	chr3_1:79789807-79789826	Msa0378920:CDS	40.0%
	AGTGGTTGAGAAATAGTTGG+CGG	+	chr3_1:79790059-79790078	Msa0378920:exon	40.0%
	CGCATATAAAGGAGAAGAGA+CGG	+	chr3_1:79790146-79790165	Msa0378920:three_prime_UTR	40.0%
	CGAAAGATAGATGACTGTGG+TGG	-	chr3_1:79788430-79788449	None:intergenic	45.0%
	AGGCGAAAGATAGATGACTG+TGG	-	chr3_1:79788433-79788452	None:intergenic	45.0%
!!	TCTTTCGCCTTTGGAGTTCT+AGG	+	chr3_1:79788443-79788462	Msa0378920:CDS	45.0%
	CACACAACCGAATGCATTGA+TGG	-	chr3_1:79788738-79788757	None:intergenic	45.0%
	CTTACTGCCCCAAGAAAGTT+AGG	+	chr3_1:79788789-79788808	Msa0378920:CDS	45.0%
	CACGTACCCTAACTTTCTTG+GGG	-	chr3_1:79788799-79788818	None:intergenic	45.0%
	GAAGGACGTATCAAGCTTCT+TGG	+	chr3_1:79789129-79789148	Msa0378920:CDS	45.0%
	GACGTATCAAGCTTCTTGGA+TGG	+	chr3_1:79789133-79789152	Msa0378920:CDS	45.0%
	TGCGAATAACAACTCTCTGC+AGG	-	chr3_1:79789325-79789344	None:intergenic	45.0%
	ATGAGGAGGAGAAGTGAAAG+TGG	-	chr3_1:79789374-79789393	None:intergenic	45.0%
	ATGTTAACCCCACAACGTTC+GGG	-	chr3_1:79789728-79789747	None:intergenic	45.0%
	GTGGTTGAGAAATAGTTGGC+GGG	+	chr3_1:79790060-79790079	Msa0378920:exon	45.0%
	CGAAAGATAGATGACTGTGG+TGG	-	chr3_1:79788430-79788449	None:intergenic	45.0%
	AGGCGAAAGATAGATGACTG+TGG	-	chr3_1:79788433-79788452	None:intergenic	45.0%
!!	TCTTTCGCCTTTGGAGTTCT+AGG	+	chr3_1:79788443-79788462	Msa0378920:CDS	45.0%
	CACACAACCGAATGCATTGA+TGG	-	chr3_1:79788738-79788757	None:intergenic	45.0%
	CTTACTGCCCCAAGAAAGTT+AGG	+	chr3_1:79788789-79788808	Msa0378920:CDS	45.0%
	CACGTACCCTAACTTTCTTG+GGG	-	chr3_1:79788799-79788818	None:intergenic	45.0%
	GAAGGACGTATCAAGCTTCT+TGG	+	chr3_1:79789129-79789148	Msa0378920:CDS	45.0%
	GACGTATCAAGCTTCTTGGA+TGG	+	chr3_1:79789133-79789152	Msa0378920:CDS	45.0%
	TGCGAATAACAACTCTCTGC+AGG	-	chr3_1:79789325-79789344	None:intergenic	45.0%
	ATGAGGAGGAGAAGTGAAAG+TGG	-	chr3_1:79789374-79789393	None:intergenic	45.0%
	ATGTTAACCCCACAACGTTC+GGG	-	chr3_1:79789728-79789747	None:intergenic	45.0%
	GTGGTTGAGAAATAGTTGGC+GGG	+	chr3_1:79790060-79790079	Msa0378920:exon	45.0%
	TCCTTCTCTCCCTTCTCACA+AGG	+	chr3_1:79788345-79788364	Msa0378920:five_prime_UTR	50.0%
	CCTTCTCTCCCTTCTCACAA+GGG	+	chr3_1:79788346-79788365	Msa0378920:five_prime_UTR	50.0%
	ACTTCTCCTCCTCATAAGCG+CGG	+	chr3_1:79789379-79789398	Msa0378920:CDS	50.0%
	ACATAACCGCGCTTATGAGG+AGG	-	chr3_1:79789388-79789407	None:intergenic	50.0%
	TCCTCATAAGCGCGGTTATG+TGG	+	chr3_1:79789387-79789406	Msa0378920:CDS	50.0%
	GCGGTTATGTGGCTGTTGTA+TGG	+	chr3_1:79789398-79789417	Msa0378920:CDS	50.0%
	TCCTTCTCTCCCTTCTCACA+AGG	+	chr3_1:79788345-79788364	Msa0378920:five_prime_UTR	50.0%
	CCTTCTCTCCCTTCTCACAA+GGG	+	chr3_1:79788346-79788365	Msa0378920:five_prime_UTR	50.0%
	ACTTCTCCTCCTCATAAGCG+CGG	+	chr3_1:79789379-79789398	Msa0378920:CDS	50.0%
	ACATAACCGCGCTTATGAGG+AGG	-	chr3_1:79789388-79789407	None:intergenic	50.0%
	TCCTCATAAGCGCGGTTATG+TGG	+	chr3_1:79789387-79789406	Msa0378920:CDS	50.0%
	GCGGTTATGTGGCTGTTGTA+TGG	+	chr3_1:79789398-79789417	Msa0378920:CDS	50.0%
	CCCTTGTGAGAAGGGAGAGA+AGG	-	chr3_1:79788349-79788368	None:intergenic	55.0%
!	ATGACTGTGGTGGGACGACA+TGG	-	chr3_1:79788420-79788439	None:intergenic	55.0%
	GCCACATAACCGCGCTTATG+AGG	-	chr3_1:79789391-79789410	None:intergenic	55.0%
	CCCTTGTGAGAAGGGAGAGA+AGG	-	chr3_1:79788349-79788368	None:intergenic	55.0%
!	ATGACTGTGGTGGGACGACA+TGG	-	chr3_1:79788420-79788439	None:intergenic	55.0%
	GCCACATAACCGCGCTTATG+AGG	-	chr3_1:79789391-79789410	None:intergenic	55.0%
	TGGACAGCTCCCGAACGTTG+TGG	+	chr3_1:79789716-79789735	Msa0378920:intron	60.0%
	GGACAGCTCCCGAACGTTGT+GGG	+	chr3_1:79789717-79789736	Msa0378920:intron	60.0%
	GACAGCTCCCGAACGTTGTG+GGG	+	chr3_1:79789718-79789737	Msa0378920:intron	60.0%
	TGGACAGCTCCCGAACGTTG+TGG	+	chr3_1:79789716-79789735	Msa0378920:intron	60.0%
	GGACAGCTCCCGAACGTTGT+GGG	+	chr3_1:79789717-79789736	Msa0378920:intron	60.0%
	GACAGCTCCCGAACGTTGTG+GGG	+	chr3_1:79789718-79789737	Msa0378920:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	79788284	79790389	79788284	ID=Msa0378920;Name=Msa0378920
chr3_1	mRNA	79788284	79790389	79788284	ID=Msa0378920-mRNA-1;Parent=Msa0378920;Name=Msa0378920-mRNA-1;_AED=0.19;_eAED=0.19;_QI=135\|1\|1\|1\|1\|1\|5\|322\|307
chr3_1	exon	79788284	79788501	79788284	ID=Msa0378920-mRNA-1:exon:19771;Parent=Msa0378920-mRNA-1
chr3_1	exon	79788601	79788811	79788601	ID=Msa0378920-mRNA-1:exon:19772;Parent=Msa0378920-mRNA-1
chr3_1	exon	79789042	79789206	79789042	ID=Msa0378920-mRNA-1:exon:19773;Parent=Msa0378920-mRNA-1
chr3_1	exon	79789329	79789448	79789329	ID=Msa0378920-mRNA-1:exon:19774;Parent=Msa0378920-mRNA-1
chr3_1	exon	79789723	79790389	79789723	ID=Msa0378920-mRNA-1:exon:19775;Parent=Msa0378920-mRNA-1
chr3_1	five_prime_UTR	79788284	79788418	79788284	ID=Msa0378920-mRNA-1:five_prime_utr;Parent=Msa0378920-mRNA-1
chr3_1	CDS	79788419	79788501	79788419	ID=Msa0378920-mRNA-1:cds;Parent=Msa0378920-mRNA-1
chr3_1	CDS	79788601	79788811	79788601	ID=Msa0378920-mRNA-1:cds;Parent=Msa0378920-mRNA-1
chr3_1	CDS	79789042	79789206	79789042	ID=Msa0378920-mRNA-1:cds;Parent=Msa0378920-mRNA-1
chr3_1	CDS	79789329	79789448	79789329	ID=Msa0378920-mRNA-1:cds;Parent=Msa0378920-mRNA-1
chr3_1	CDS	79789723	79790067	79789723	ID=Msa0378920-mRNA-1:cds;Parent=Msa0378920-mRNA-1
chr3_1	three_prime_UTR	79790068	79790389	79790068	ID=Msa0378920-mRNA-1:three_prime_utr;Parent=Msa0378920-mRNA-1

Gene Sequence

>Msa0378920

ATGTCGTCCCACCACAGTCATCTATCTTTCGCCTTTGGAGTTCTAGGCAACATTACATCATTTCTTTGCTTTCTGGCACCACTACCAACATTTTATCGAATTTGTAAGAAGAAATCAACAGAAGGTTTCCAATCAATTCCATATGTGGCTGCACTATTTAGTGCAATGCTTTGGATGTTTTATGCCTATACCAAGAAGGGTGAAACTCTTCTTATCACCATCAATGCATTCGGTTGTGTGATAGAGACAATTTACCTTGCAGTTTTTGTCACTTACTGCCCCAAGAAAGTTAGGATGTCAACATTGAGGATGATTGTGTTGATGAACTTTGTGGGATTTGGCACGATTGTCTTGTTAACTCACTTCCTAGCAAAACAAGAAGAAGGACGTATCAAGCTTCTTGGATGGATTTGTGTAGTTTTTGCAACTAGTGTTTTTGCTGCCCCTTTAAGCATTATTAGAGTTGTTATTCGCACCAAAAGTGTAGAGTTCCTTCCTTTTCCACTTTCACTTCTCCTCCTCATAAGCGCGGTTATGTGGCTGTTGTATGGTCTTTCTCTCCGAGATATCTATGTTACTCTCCCGAACGTTGTGGGGTTAACATTTGGAATAGTTCAGATCACACTCTATGCAATGTACAGAAACAGCAAACCCGTAATTGATGAGAAGCTACCAGAACATAAAGGAGACATTGTCGACAAAGAAATTGAAAACGTAGTTGTTCCAAGCAAAACAACAAATGATGAGAAGAAACTAGAAGTGAATGTTGATATTGTGACTGTAGAGAAAAAGGAAGAGAAACAAGATGAAGAACATGATGAGAATGAGAAGAAACAGGACCAAGTAACTCAAGACAAAACAAAGGTTAAGAATGAAAATGACAACACTAATATCAACAAAACAGAAGAGAAGGTTAGTGGTTGA

Protein sequence

>Msa0378920

MSSHHSHLSFAFGVLGNITSFLCFLAPLPTFYRICKKKSTEGFQSIPYVAALFSAMLWMFYAYTKKGETLLITINAFGCVIETIYLAVFVTYCPKKVRMSTLRMIVLMNFVGFGTIVLLTHFLAKQEEGRIKLLGWICVVFATSVFAAPLSIIRVVIRTKSVEFLPFPLSLLLLISAVMWLLYGLSLRDIYVTLPNVVGLTFGIVQITLYAMYRNSKPVIDEKLPEHKGDIVDKEIENVVVPSKTTNDEKKLEVNVDIVTVEKKEEKQDEEHDENEKKQDQVTQDKTKVKNENDNTNINKTEEKVSG*