AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147600 MtrunA17_Chr7g0234581 97.375 419 5 2 1 416 1 416 0.0 796
Msa1147600 MtrunA17_Chr5g0398471 41.100 309 168 5 97 394 117 422 7.43e-63 208
Msa1147600 MtrunA17_Chr5g0398481 42.193 301 164 5 97 388 113 412 7.27e-62 206
Msa1147600 MtrunA17_Chr4g0062901 41.333 300 171 3 94 392 100 395 6.88e-61 202
Msa1147600 MtrunA17_Chr2g0314491 35.693 339 205 7 70 400 65 398 3.26e-52 179
Msa1147600 MtrunA17_Chr2g0314561 36.129 310 190 4 88 392 71 377 4.00e-48 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147600 AT3G25410.1 73.529 374 87 4 31 403 56 418 0.0 532
Msa1147600 AT4G22840.1 41.317 334 173 6 72 394 82 403 3.09e-70 227
Msa1147600 AT4G12030.2 39.883 341 180 7 74 397 75 407 5.72e-65 213
Msa1147600 AT4G12030.4 41.479 311 168 5 98 397 9 316 1.26e-64 210
Msa1147600 AT2G26900.1 41.667 300 170 3 94 392 99 394 4.65e-61 203
Msa1147600 AT4G12030.1 43.116 276 143 5 133 397 1 273 4.01e-57 189
Msa1147600 AT4G12030.5 43.116 276 143 5 133 397 1 273 4.01e-57 189
Msa1147600 AT4G12030.3 43.116 276 143 5 133 397 1 273 4.01e-57 189
Msa1147600 AT1G78560.1 33.673 392 240 9 11 394 14 393 1.15e-48 171

Find 130 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTCACAGCTTGTGTTTC+AGG 0.064988 7_4:+26980213 Msa1147600:CDS
GTCTCTGTCTTGCCTCATTT+TGG 0.084396 7_4:+26982083 Msa1147600:CDS
AAATCTTCGTTTCTTAAATT+TGG 0.131700 7_4:+26978798 Msa1147600:CDS
TTATTAACCGGTCTTCTAAT+TGG 0.198158 7_4:+26980339 Msa1147600:CDS
CTGCCTTCACCTTAGGATAT+TGG 0.236729 7_4:+26980872 Msa1147600:CDS
ACTTCTCGTTTCTTATTTGT+TGG 0.313744 7_4:+26982180 Msa1147600:exon
AAGCCTGCATAAAACATTCT+AGG 0.319366 7_4:-26980189 None:intergenic
ACGAAGATTTCCCTTCAATA+TGG 0.333533 7_4:-26978785 None:intergenic
CATGTCAAAGTCAATATTAC+AGG 0.348460 7_4:+26980389 Msa1147600:CDS
ATGCAGAGCTCCACACTTGC+AGG 0.351140 7_4:+26981983 Msa1147600:CDS
GTGTTGATTGCAAAGGCTTT+TGG 0.352496 7_4:+26980162 Msa1147600:CDS
TGTTGTAGCCATGGCTATAA+TGG 0.352603 7_4:+26982060 Msa1147600:CDS
CATGCTGCTGCCTTCACCTT+AGG 0.359179 7_4:+26980865 Msa1147600:CDS
ATTAGAAGACCGGTTAATAA+AGG 0.370953 7_4:-26980336 None:intergenic
TCTCAAACCTTCCATCCTTA+AGG 0.384028 7_4:+26980896 Msa1147600:CDS
AACAATAACCGACGCAATAG+TGG 0.386749 7_4:-26980310 None:intergenic
ATTGTTACGCCTTTATTAAC+CGG 0.394459 7_4:+26980327 Msa1147600:CDS
TTAGGCCTCAAAAGCAGAAT+TGG 0.395698 7_4:-26982158 None:intergenic
CTTTCATTTGTTCTCATTCA+CGG 0.400308 7_4:+26978287 Msa1147600:five_prime_UTR
GTTGTTGGTGGTGGTGATGT+TGG 0.401073 7_4:+26978843 Msa1147600:CDS
AGAAGAAGACCAAGTGTTAC+CGG 0.402472 7_4:-26980682 None:intergenic
GGACAATGAATTTAATATAG+TGG 0.410351 7_4:+26982211 Msa1147600:three_prime_UTR
AGCATAATCCCGCCAAGTGC+TGG 0.410739 7_4:-26979932 None:intergenic
GGCGGGATTATGCTGTCCAT+TGG 0.417685 7_4:+26979941 Msa1147600:CDS
GTTGTAGCCATGGCTATAAT+GGG 0.430006 7_4:+26982061 Msa1147600:CDS
GCAGTAACAGCAACAACAAA+AGG 0.435076 7_4:-26978903 None:intergenic
TGCTCAACTTCTAAGTTTCA+CGG 0.437682 7_4:+26978744 Msa1147600:CDS
GACATGGCAACTGCATCAAC+CGG 0.444864 7_4:-26980372 None:intergenic
CAAATAAGAAACGAGAAGTT+AGG 0.445610 7_4:-26982176 None:intergenic
GGGAGTGAATGGAGAGAAAA+CGG 0.449174 7_4:-26978616 None:intergenic
GGTGTGAAGAGGAATGAGGG+AGG 0.451446 7_4:-26978563 None:intergenic
TTGTCACAGGCAGGAAGAAC+AGG 0.451789 7_4:+26981931 Msa1147600:intron
AAGAGAGGGTGGAAAGATAG+AGG 0.456832 7_4:-26978657 None:intergenic
GTTGGGTTTAACCATATTGA+AGG 0.457040 7_4:+26978774 Msa1147600:CDS
TGAGACCCTTTGAAGGGAAA+AGG 0.463191 7_4:-26978694 None:intergenic
CACCCTTTGAGACCCTTTGA+AGG 0.464243 7_4:-26978701 None:intergenic
TCTTATTTGTTGGCATTCGT+TGG 0.467302 7_4:+26982190 Msa1147600:three_prime_UTR
GTTCTTGCTCCGGTAACACT+TGG 0.469417 7_4:+26980673 Msa1147600:CDS
AGTTTCACGGTGGAAGAGTT+GGG 0.470701 7_4:+26978757 Msa1147600:CDS
GCGGGATTATGCTGTCCATT+GGG 0.473353 7_4:+26979942 Msa1147600:CDS
TTTCATTTGTTCTCATTCAC+GGG 0.473707 7_4:+26978288 Msa1147600:five_prime_UTR
TTCCCTTCAAAGGGTCTCAA+AGG 0.483931 7_4:+26978698 Msa1147600:CDS
CGCCTGACAAAATTTGACTT+CGG 0.484249 7_4:-26980807 None:intergenic
ATGCAAGCTTTATAAGCAAA+GGG 0.488212 7_4:+26980253 Msa1147600:CDS
AAAACCCTTTCCCCAAAATG+AGG 0.492404 7_4:-26982095 None:intergenic
TTTACAGGTTGTTCTTGCTC+CGG 0.494195 7_4:+26980663 Msa1147600:intron
TCCCTTCAAAGGGTCTCAAA+GGG 0.498763 7_4:+26978699 Msa1147600:CDS
CAGAGATGGCTAGGAAATGT+AGG 0.501301 7_4:+26982243 Msa1147600:three_prime_UTR
AATCCAATGGAAAGTGGTAA+AGG 0.501425 7_4:-26980105 None:intergenic
GAATGAGAACAAATGAAAGT+AGG 0.506594 7_4:-26978283 None:intergenic
GGGAATGGAAGCCATTGAAA+AGG 0.508240 7_4:-26978595 None:intergenic
GTCAGGCGAAGGTCTTCGAT+TGG 0.511001 7_4:+26980822 Msa1147600:CDS
GTGAAGGTAATGATGACAAC+AGG 0.512253 7_4:-26982129 None:intergenic
TATATGCTCCAGCACTTGGC+GGG 0.513534 7_4:+26979924 Msa1147600:CDS
TGCAAGAAGGCCTGCAAGTG+TGG 0.515778 7_4:-26981993 None:intergenic
AATGAGAACAAATGAAAGTA+GGG 0.515899 7_4:-26978282 None:intergenic
AAGATTGAAGAAGAAGATGA+GGG 0.516460 7_4:-26978535 None:intergenic
AAGTTTCACGGTGGAAGAGT+TGG 0.516801 7_4:+26978756 Msa1147600:CDS
TGCATGTTCTGTTGTAGCCA+TGG 0.517184 7_4:+26982051 Msa1147600:CDS
GCTTGTAAGAACAATGCATA+AGG 0.519680 7_4:-26980283 None:intergenic
AGGCCTTTACCACTTTCCAT+TGG 0.519903 7_4:+26980102 Msa1147600:intron
GAAGATTGAAGAAGAAGATG+AGG 0.520443 7_4:-26978536 None:intergenic
GGTCGAAGAATAGATACAAC+TGG 0.521194 7_4:-26980721 None:intergenic
GCAATCAACACACCAAGTAC+AGG 0.525650 7_4:-26980150 None:intergenic
TTTCAAGTGTATAGGTTAGT+CGG 0.531710 7_4:+26982277 Msa1147600:three_prime_UTR
TCTAATTGGATCTGTTGTGC+CGG 0.531991 7_4:+26980353 Msa1147600:CDS
TGAGAGTGATGATAGATAGA+TGG 0.532391 7_4:-26978251 None:intergenic
GGAACCCCACCAAGTAAAAG+TGG 0.532912 7_4:-26978949 None:intergenic
CTGTAATATTGACTTTGACA+TGG 0.533145 7_4:-26980388 None:intergenic
GCAGCATGAAATATTAATAC+CGG 0.533156 7_4:-26980850 None:intergenic
GTGATGTTGGTGAAAGAGAT+TGG 0.536602 7_4:+26978856 Msa1147600:CDS
GAGTTATATGCTCCAGCACT+TGG 0.538754 7_4:+26979920 Msa1147600:CDS
ACTTGGTGTGTTGATTGCAA+AGG 0.540051 7_4:+26980155 Msa1147600:CDS
AGGACAATTTCATTATGCAC+TGG 0.540158 7_4:+26981959 Msa1147600:CDS
TGCAAGAGCAAAATCTTCCA+TGG 0.540161 7_4:-26979975 None:intergenic
GTACAAATCATAGCAACAAA+GGG 0.540347 7_4:-26980751 None:intergenic
ATAGCAACAAAGGGCATCAC+AGG 0.544933 7_4:-26980742 None:intergenic
GAAAGTGAAAGTGTTGTTGT+TGG 0.546023 7_4:+26978828 Msa1147600:CDS
TATGCAAGCTTTATAAGCAA+AGG 0.546167 7_4:+26980252 Msa1147600:CDS
CAGCATACCTTAAGGATGGA+AGG 0.547119 7_4:-26980903 None:intergenic
AGTGAAAGTGTTGTTGTTGG+TGG 0.547709 7_4:+26978831 Msa1147600:CDS
GTGATGATAGATAGATGGTT+GGG 0.550665 7_4:-26978246 None:intergenic
ACCCTTTGAGACCCTTTGAA+GGG 0.553739 7_4:-26978700 None:intergenic
GAAGAGCGAGTGCGTAAGAG+AGG 0.554459 7_4:-26978672 None:intergenic
GAAAGTGTTGTTGTTGGTGG+TGG 0.556199 7_4:+26978834 Msa1147600:CDS
TTGGGTTTAACCATATTGAA+GGG 0.556859 7_4:+26978775 Msa1147600:CDS
TATGTACTGAAACCTGTACT+TGG 0.557862 7_4:+26980138 Msa1147600:CDS
TTATATGCTCCAGCACTTGG+CGG 0.558780 7_4:+26979923 Msa1147600:CDS
GGAATGGAAGCCATTGAAAA+GGG 0.558838 7_4:-26978594 None:intergenic
AGGTCTTCGATTGGTTGCTC+CGG 0.561129 7_4:+26980831 Msa1147600:CDS
AGCGAGTGCGTAAGAGAGGG+TGG 0.561510 7_4:-26978668 None:intergenic
GCAATAAATCCAATGGAAAG+TGG 0.561801 7_4:-26980111 None:intergenic
TACTAATATCAGAGATGGCT+AGG 0.561824 7_4:+26982234 Msa1147600:three_prime_UTR
AACAGATCCAATTAGAAGAC+CGG 0.566058 7_4:-26980346 None:intergenic
CATTGGGATAGGACTATCCA+TGG 0.567638 7_4:+26979958 Msa1147600:CDS
ATTTGTACTTCATTGTGCAT+TGG 0.567873 7_4:+26980766 Msa1147600:CDS
AAGCTATACCACTATTGCGT+CGG 0.568809 7_4:+26980302 Msa1147600:CDS
AGCCATTGAAAAGGGAGAGA+GGG 0.569606 7_4:-26978586 None:intergenic
ATTATGCTGTCCATTGGGAT+AGG 0.571663 7_4:+26979947 Msa1147600:CDS
GAATGGAGAGAAAACGGGAA+TGG 0.572060 7_4:-26978610 None:intergenic
AAGACAGCATACCTTAAGGA+TGG 0.572336 7_4:-26980907 None:intergenic
GGAGTGAATGGAGAGAAAAC+GGG 0.572507 7_4:-26978615 None:intergenic
AGTGATGATAGATAGATGGT+TGG 0.572789 7_4:-26978247 None:intergenic
TGACTTCGGTTTATAGCAAG+AGG 0.580840 7_4:-26980793 None:intergenic
GCAGAATTGGTTCTGAGTGA+AGG 0.580855 7_4:-26982145 None:intergenic
GCCATTGAAAAGGGAGAGAG+GGG 0.583889 7_4:-26978585 None:intergenic
ATATTGAGCAATAAATCCAA+TGG 0.589160 7_4:-26980118 None:intergenic
AGTGGTACTAATATCAGAGA+TGG 0.590087 7_4:+26982229 Msa1147600:three_prime_UTR
GTTTGAGAACCAATATCCTA+AGG 0.590940 7_4:-26980881 None:intergenic
TAGTAGCAAGTCTATGTACA+AGG 0.596487 7_4:-26982416 None:intergenic
CATGGATAGTCCTATCCCAA+TGG 0.597745 7_4:-26979957 None:intergenic
GGCAGGAAGAACAGGTGAGT+AGG 0.607044 7_4:+26981939 Msa1147600:intron
CTTCAAAGGGTCTCAAAGGG+TGG 0.608490 7_4:+26978702 Msa1147600:CDS
AGTACAAATCATAGCAACAA+AGG 0.608493 7_4:-26980752 None:intergenic
GAACCAATATCCTAAGGTGA+AGG 0.613291 7_4:-26980875 None:intergenic
AAGAGCGAGTGCGTAAGAGA+GGG 0.620085 7_4:-26978671 None:intergenic
ACAGAGACCCATTATAGCCA+TGG 0.620465 7_4:-26982068 None:intergenic
AAGCCATTGAAAAGGGAGAG+AGG 0.621806 7_4:-26978587 None:intergenic
CCCCACCAAGTAAAAGTGGA+AGG 0.630594 7_4:-26978945 None:intergenic
GTGTGAAGAGGAATGAGGGA+GGG 0.633319 7_4:-26978562 None:intergenic
GACTTCGGTTTATAGCAAGA+GGG 0.640397 7_4:-26980792 None:intergenic
ATGGCTACAACAGAACATGC+AGG 0.649051 7_4:-26982049 None:intergenic
AGATTGAAGAAGAAGATGAG+GGG 0.662587 7_4:-26978534 None:intergenic
CTCCTGAAACACAAGCTGTG+AGG 0.689260 7_4:-26980215 None:intergenic
TAACACTGTATACACGACCA+AGG 0.698470 7_4:+26982315 Msa1147600:three_prime_UTR
TGCAAGCTTTATAAGCAAAG+GGG 0.704367 7_4:+26980254 Msa1147600:CDS
GCTACAACAGAACATGCAGG+AGG 0.738196 7_4:-26982046 None:intergenic
CCATTGAAAAGGGAGAGAGG+GGG 0.761711 7_4:-26978584 None:intergenic
AAAATGTATTCATTGTAACG+CGG 0.769348 7_4:+26982338 Msa1147600:three_prime_UTR
TCAACTTCTAAGTTTCACGG+TGG 0.796235 7_4:+26978747 Msa1147600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATTATATTTAGAAAAAA+AGG + chr7_4:26981495-26981514 Msa1147600:intron 10.0%
!!! ATTAATTAACACTTGTTTTA+AGG + chr7_4:26979022-26979041 Msa1147600:intron 15.0%
!! TACATATAAACTAAACAAAA+GGG - chr7_4:26979119-26979138 None:intergenic 15.0%
!! ATACATATAAACTAAACAAA+AGG - chr7_4:26979120-26979139 None:intergenic 15.0%
!!! TTTAGTTTATATGTATGTAT+TGG + chr7_4:26979124-26979143 Msa1147600:intron 15.0%
!!! TGTTTTTTTATTCAGATTAT+TGG + chr7_4:26979164-26979183 Msa1147600:intron 15.0%
!!! GTTTTTTTATTCAGATTATT+GGG + chr7_4:26979165-26979184 Msa1147600:intron 15.0%
!!! TTTTTTTATTCAGATTATTG+GGG + chr7_4:26979166-26979185 Msa1147600:intron 15.0%
!!! AAATATATTGATTGACAAAT+TGG - chr7_4:26979718-26979737 None:intergenic 15.0%
!! TTTATAAAGTAGAATAACTT+TGG - chr7_4:26979747-26979766 None:intergenic 15.0%
!!! TTAATTTGTCAAAATTTTAC+AGG + chr7_4:26980648-26980667 Msa1147600:intron 15.0%
!! AAATATATATCTTTCCTATA+AGG + chr7_4:26981295-26981314 Msa1147600:intron 15.0%
!! TATATATAATTGTTCCTTAT+AGG - chr7_4:26981312-26981331 None:intergenic 15.0%
!!! GGTTTTTCTATTTTTAAAAT+AGG + chr7_4:26981621-26981640 Msa1147600:intron 15.0%
!!! GTGTTTTTGTAACAATAAAA+AGG - chr7_4:26978389-26978408 None:intergenic 20.0%
!! AAATCTTCGTTTCTTAAATT+TGG + chr7_4:26978798-26978817 Msa1147600:CDS 20.0%
!!! GAATAAAAAAACAACTTTTC+AGG - chr7_4:26979157-26979176 None:intergenic 20.0%
!!! AAAATTTGCTTATAATTGAG+AGG + chr7_4:26979459-26979478 Msa1147600:intron 20.0%
!!! AAATTTGCTTATAATTGAGA+GGG + chr7_4:26979460-26979479 Msa1147600:intron 20.0%
!! TAATGAATATTGAAAGAAGT+TGG - chr7_4:26980064-26980083 None:intergenic 20.0%
!! ATTAGTTATGTTTGTTCATT+TGG + chr7_4:26980989-26981008 Msa1147600:intron 20.0%
!! GTTAATTTACAACATTCAAT+AGG - chr7_4:26981158-26981177 None:intergenic 20.0%
!! TATATTCTTATTACTGAGAT+TGG + chr7_4:26981330-26981349 Msa1147600:intron 20.0%
!! ATTTAGTACATACAGAAAAA+TGG + chr7_4:26981521-26981540 Msa1147600:intron 20.0%
!!! TTTTTAAAATAGGTCCAATT+TGG + chr7_4:26981631-26981650 Msa1147600:intron 20.0%
!!! TAGCAAAAAACAGAATTTTA+GGG - chr7_4:26981688-26981707 None:intergenic 20.0%
!!! ATAGCAAAAAACAGAATTTT+AGG - chr7_4:26981689-26981708 None:intergenic 20.0%
!!! ACAAAAATTTTCAAGTGTAT+AGG + chr7_4:26982269-26982288 Msa1147600:three_prime_UTR 20.0%
! AATGAGAACAAATGAAAGTA+GGG - chr7_4:26978285-26978304 None:intergenic 25.0%
!! CAAAAGACATGCAAATTTTA+AGG - chr7_4:26978973-26978992 None:intergenic 25.0%
!! CTTAAAATTTGCATGTCTTT+TGG + chr7_4:26978971-26978990 Msa1147600:intron 25.0%
!! AATTTGCTTATAATTGAGAG+GGG + chr7_4:26979461-26979480 Msa1147600:intron 25.0%
! ATATTGAGCAATAAATCCAA+TGG - chr7_4:26980121-26980140 None:intergenic 25.0%
!! TCAATATTACAGGTAAGTTT+TGG + chr7_4:26980399-26980418 Msa1147600:intron 25.0%
! TACATTTGATAAAGAGCTTT+AGG + chr7_4:26981094-26981113 Msa1147600:intron 25.0%
! ACATTTGATAAAGAGCTTTA+GGG + chr7_4:26981095-26981114 Msa1147600:intron 25.0%
! ATGATAACACTTTCCAAAAT+TGG - chr7_4:26981366-26981385 None:intergenic 25.0%
!! TATTTGACATTGCGTATTTT+GGG - chr7_4:26981424-26981443 None:intergenic 25.0%
! TACAATAAATACTTTGTCAC+AGG + chr7_4:26981918-26981937 Msa1147600:intron 25.0%
! GGACAATGAATTTAATATAG+TGG + chr7_4:26982211-26982230 Msa1147600:three_prime_UTR 25.0%
!! TACAATGAATACATTTTCCT+TGG - chr7_4:26982335-26982354 None:intergenic 25.0%
! AAAATGTATTCATTGTAACG+CGG + chr7_4:26982338-26982357 Msa1147600:three_prime_UTR 25.0%
GAATGAGAACAAATGAAAGT+AGG - chr7_4:26978286-26978305 None:intergenic 30.0%
CTTTCATTTGTTCTCATTCA+CGG + chr7_4:26978287-26978306 Msa1147600:five_prime_UTR 30.0%
TTTCATTTGTTCTCATTCAC+GGG + chr7_4:26978288-26978307 Msa1147600:five_prime_UTR 30.0%
TAAACACTGTAGAAAACTGA+AGG - chr7_4:26978338-26978357 None:intergenic 30.0%
TCTCTCACCTATTTAATAGA+GGG + chr7_4:26978409-26978428 Msa1147600:intron 30.0%
CCATTAACCCTCTATTAAAT+AGG - chr7_4:26978419-26978438 None:intergenic 30.0%
CCTATTTAATAGAGGGTTAA+TGG + chr7_4:26978416-26978435 Msa1147600:intron 30.0%
ATTTAATAGAGGGTTAATGG+AGG + chr7_4:26978419-26978438 Msa1147600:intron 30.0%
TTTAATAGAGGGTTAATGGA+GGG + chr7_4:26978420-26978439 Msa1147600:intron 30.0%
TACACATGAGAGAAAAAAAC+TGG + chr7_4:26978450-26978469 Msa1147600:intron 30.0%
AAGATTGAAGAAGAAGATGA+GGG - chr7_4:26978538-26978557 None:intergenic 30.0%
!! GGTTTATGCTTTTGTTTCAT+GGG - chr7_4:26978639-26978658 None:intergenic 30.0%
!! AGGTTTATGCTTTTGTTTCA+TGG - chr7_4:26978640-26978659 None:intergenic 30.0%
TTGGGTTTAACCATATTGAA+GGG + chr7_4:26978775-26978794 Msa1147600:CDS 30.0%
!!! ATTTGCATGTCTTTTGGTTT+TGG + chr7_4:26978977-26978996 Msa1147600:intron 30.0%
!! TCAGAAGTGTTAGTGATAAA+CGG + chr7_4:26979332-26979351 Msa1147600:intron 30.0%
GCTATCATGTGTTTGATTAA+AGG + chr7_4:26979363-26979382 Msa1147600:intron 30.0%
! ACACATTTGTTAATAGAGAC+CGG - chr7_4:26979409-26979428 None:intergenic 30.0%
ATACTATGCATTTGCATAGT+CGG + chr7_4:26979537-26979556 Msa1147600:intron 30.0%
AATGTCTAATCTTGATCCAA+CGG - chr7_4:26979574-26979593 None:intergenic 30.0%
GTTAGTTGAAGCATATAGAA+AGG + chr7_4:26979837-26979856 Msa1147600:intron 30.0%
TTGAAGCATATAGAAAGGAA+TGG + chr7_4:26979842-26979861 Msa1147600:intron 30.0%
!!! TTCAACTTGTTTTACTGATC+AGG + chr7_4:26979888-26979907 Msa1147600:intron 30.0%
!!! TCAACTTGTTTTACTGATCA+GGG + chr7_4:26979889-26979908 Msa1147600:intron 30.0%
! ATTTTGCTCTTGCATTCAAA+AGG + chr7_4:26979984-26980003 Msa1147600:CDS 30.0%
!! TTTGCCTGTTTTTCAATAAG+TGG + chr7_4:26980032-26980051 Msa1147600:intron 30.0%
TACTCCACTTATTGAAAAAC+AGG - chr7_4:26980039-26980058 None:intergenic 30.0%
!!! TATTTTGATGATTCTGTTGC+AGG + chr7_4:26980082-26980101 Msa1147600:intron 30.0%
! TATGCAAGCTTTATAAGCAA+AGG + chr7_4:26980252-26980271 Msa1147600:CDS 30.0%
! ATGCAAGCTTTATAAGCAAA+GGG + chr7_4:26980253-26980272 Msa1147600:CDS 30.0%
ATTGTTACGCCTTTATTAAC+CGG + chr7_4:26980327-26980346 Msa1147600:CDS 30.0%
ATTAGAAGACCGGTTAATAA+AGG - chr7_4:26980339-26980358 None:intergenic 30.0%
TTATTAACCGGTCTTCTAAT+TGG + chr7_4:26980339-26980358 Msa1147600:CDS 30.0%
!! CTGTAATATTGACTTTGACA+TGG - chr7_4:26980391-26980410 None:intergenic 30.0%
CATGTCAAAGTCAATATTAC+AGG + chr7_4:26980389-26980408 Msa1147600:CDS 30.0%
! TATTAAGCGTTGTCAAATAG+CGG + chr7_4:26980535-26980554 Msa1147600:intron 30.0%
TCTGACATTAAACCAAATTC+AGG - chr7_4:26980628-26980647 None:intergenic 30.0%
GTACAAATCATAGCAACAAA+GGG - chr7_4:26980754-26980773 None:intergenic 30.0%
AGTACAAATCATAGCAACAA+AGG - chr7_4:26980755-26980774 None:intergenic 30.0%
ATTTGTACTTCATTGTGCAT+TGG + chr7_4:26980766-26980785 Msa1147600:CDS 30.0%
GCAGCATGAAATATTAATAC+CGG - chr7_4:26980853-26980872 None:intergenic 30.0%
AGTTATGTTTGTTCATTTGG+TGG + chr7_4:26980992-26981011 Msa1147600:intron 30.0%
TCACATCTCTGATACTAAAA+TGG - chr7_4:26981251-26981270 None:intergenic 30.0%
TGTTATCATGTTATCAAGAG+TGG + chr7_4:26981377-26981396 Msa1147600:intron 30.0%
! CTATTTGACATTGCGTATTT+TGG - chr7_4:26981425-26981444 None:intergenic 30.0%
GATTTATTTCAACTGCTATG+TGG - chr7_4:26981477-26981496 None:intergenic 30.0%
CATACAGAAAAATGGAATGT+AGG + chr7_4:26981529-26981548 Msa1147600:intron 30.0%
CTACGTATTACAGTGAATAT+AGG + chr7_4:26981579-26981598 Msa1147600:intron 30.0%
! CTTCTTGCAACTCAATTTTT+GGG + chr7_4:26982007-26982026 Msa1147600:CDS 30.0%
CAAATAAGAAACGAGAAGTT+AGG - chr7_4:26982179-26982198 None:intergenic 30.0%
! ACTTCTCGTTTCTTATTTGT+TGG + chr7_4:26982180-26982199 Msa1147600:exon 30.0%
! TTTCAAGTGTATAGGTTAGT+CGG + chr7_4:26982277-26982296 Msa1147600:three_prime_UTR 30.0%
GTGATGATAGATAGATGGTT+GGG - chr7_4:26978249-26978268 None:intergenic 35.0%
AGTGATGATAGATAGATGGT+TGG - chr7_4:26978250-26978269 None:intergenic 35.0%
TGAGAGTGATGATAGATAGA+TGG - chr7_4:26978254-26978273 None:intergenic 35.0%
! AGGAGAGAGAGTATAATCAA+AGG - chr7_4:26978369-26978388 None:intergenic 35.0%
CTCTCTCACCTATTTAATAG+AGG + chr7_4:26978408-26978427 Msa1147600:intron 35.0%
ATATGTACGAGTGTGAATGA+GGG - chr7_4:26978489-26978508 None:intergenic 35.0%
TATATGTACGAGTGTGAATG+AGG - chr7_4:26978490-26978509 None:intergenic 35.0%
AGATTGAAGAAGAAGATGAG+GGG - chr7_4:26978537-26978556 None:intergenic 35.0%
GAAGATTGAAGAAGAAGATG+AGG - chr7_4:26978539-26978558 None:intergenic 35.0%
!! TTTTGTTTCATGGGAGTGAA+TGG - chr7_4:26978630-26978649 None:intergenic 35.0%
TGCTCAACTTCTAAGTTTCA+CGG + chr7_4:26978744-26978763 Msa1147600:CDS 35.0%
GTTGGGTTTAACCATATTGA+AGG + chr7_4:26978774-26978793 Msa1147600:CDS 35.0%
ACGAAGATTTCCCTTCAATA+TGG - chr7_4:26978788-26978807 None:intergenic 35.0%
!! GAAAGTGAAAGTGTTGTTGT+TGG + chr7_4:26978828-26978847 Msa1147600:CDS 35.0%
TCACTAACACTTCTGATTGA+AGG - chr7_4:26979328-26979347 None:intergenic 35.0%
ATCAAACACATGATAGCCTA+GGG - chr7_4:26979360-26979379 None:intergenic 35.0%
AATCAAACACATGATAGCCT+AGG - chr7_4:26979361-26979380 None:intergenic 35.0%
! ATTTGTTAATAGAGACCGGA+GGG - chr7_4:26979405-26979424 None:intergenic 35.0%
!! AGGGGATGGAGTATTATTTT+AGG + chr7_4:26979479-26979498 Msa1147600:intron 35.0%
TATTCATTTCCATAGCAGAG+GGG - chr7_4:26979505-26979524 None:intergenic 35.0%
GTATTCATTTCCATAGCAGA+GGG - chr7_4:26979506-26979525 None:intergenic 35.0%
TGTATTCATTTCCATAGCAG+AGG - chr7_4:26979507-26979526 None:intergenic 35.0%
TTGGAGTCAGAATACAGATA+TGG - chr7_4:26979699-26979718 None:intergenic 35.0%
AATCCAATGGAAAGTGGTAA+AGG - chr7_4:26980108-26980127 None:intergenic 35.0%
GCAATAAATCCAATGGAAAG+TGG - chr7_4:26980114-26980133 None:intergenic 35.0%
TATGTACTGAAACCTGTACT+TGG + chr7_4:26980138-26980157 Msa1147600:CDS 35.0%
! TTGCCTAGAATGTTTTATGC+AGG + chr7_4:26980186-26980205 Msa1147600:CDS 35.0%
AAGCCTGCATAAAACATTCT+AGG - chr7_4:26980192-26980211 None:intergenic 35.0%
! TGCAAGCTTTATAAGCAAAG+GGG + chr7_4:26980254-26980273 Msa1147600:CDS 35.0%
GCTTGTAAGAACAATGCATA+AGG - chr7_4:26980286-26980305 None:intergenic 35.0%
AACAGATCCAATTAGAAGAC+CGG - chr7_4:26980349-26980368 None:intergenic 35.0%
GAATCAGTGTTGTCAAATAG+AGG + chr7_4:26980447-26980466 Msa1147600:intron 35.0%
! AACCGAAGTCAAATTTTGTC+AGG + chr7_4:26980805-26980824 Msa1147600:CDS 35.0%
GTTTGAGAACCAATATCCTA+AGG - chr7_4:26980884-26980903 None:intergenic 35.0%
TCTAAAGACAGCATACCTTA+AGG - chr7_4:26980914-26980933 None:intergenic 35.0%
AGCTGAATTATCTACTGACA+AGG - chr7_4:26981018-26981037 None:intergenic 35.0%
TCAGTAGATAATTCAGCTTC+AGG + chr7_4:26981020-26981039 Msa1147600:intron 35.0%
CCAACTTCAATCTTAACTCA+AGG - chr7_4:26981065-26981084 None:intergenic 35.0%
CCTTGAGTTAAGATTGAAGT+TGG + chr7_4:26981062-26981081 Msa1147600:intron 35.0%
! TTTTTCCTTCTCATTCTTGC+TGG + chr7_4:26981184-26981203 Msa1147600:intron 35.0%
! TTTTCCTTCTCATTCTTGCT+GGG + chr7_4:26981185-26981204 Msa1147600:intron 35.0%
! ACTTTCCAAAATTGGTTCAG+AGG - chr7_4:26981358-26981377 None:intergenic 35.0%
!! ATGTTATCAAGAGTGGATTG+CGG + chr7_4:26981384-26981403 Msa1147600:intron 35.0%
ATAGCAATGCTATAGCTTAG+CGG - chr7_4:26981770-26981789 None:intergenic 35.0%
TTGCAAACAAAAGTTAGCAC+AGG - chr7_4:26981834-26981853 None:intergenic 35.0%
ATAAATACTTTGTCACAGGC+AGG + chr7_4:26981922-26981941 Msa1147600:intron 35.0%
AGGACAATTTCATTATGCAC+TGG + chr7_4:26981959-26981978 Msa1147600:CDS 35.0%
! CCAAAAATTGAGTTGCAAGA+AGG - chr7_4:26982009-26982028 None:intergenic 35.0%
! CCTTCTTGCAACTCAATTTT+TGG + chr7_4:26982006-26982025 Msa1147600:CDS 35.0%
! TCTTATTTGTTGGCATTCGT+TGG + chr7_4:26982190-26982209 Msa1147600:three_prime_UTR 35.0%
AGTGGTACTAATATCAGAGA+TGG + chr7_4:26982229-26982248 Msa1147600:three_prime_UTR 35.0%
TACTAATATCAGAGATGGCT+AGG + chr7_4:26982234-26982253 Msa1147600:three_prime_UTR 35.0%
TAGTAGCAAGTCTATGTACA+AGG - chr7_4:26982419-26982438 None:intergenic 35.0%
!! AAAACTGAAGGTATCTCCAC+TGG - chr7_4:26978326-26978345 None:intergenic 40.0%
TATGTACGAGTGTGAATGAG+GGG - chr7_4:26978488-26978507 None:intergenic 40.0%
GGAATGGAAGCCATTGAAAA+GGG - chr7_4:26978597-26978616 None:intergenic 40.0%
! CTCTTCCTTTTCCCTTCAAA+GGG + chr7_4:26978689-26978708 Msa1147600:CDS 40.0%
TCAACTTCTAAGTTTCACGG+TGG + chr7_4:26978747-26978766 Msa1147600:CDS 40.0%
!! AGTGAAAGTGTTGTTGTTGG+TGG + chr7_4:26978831-26978850 Msa1147600:CDS 40.0%
! GTGATGTTGGTGAAAGAGAT+TGG + chr7_4:26978856-26978875 Msa1147600:CDS 40.0%
GCAGTAACAGCAACAACAAA+AGG - chr7_4:26978906-26978925 None:intergenic 40.0%
!! CTCAACCTTCCACTTTTACT+TGG + chr7_4:26978940-26978959 Msa1147600:CDS 40.0%
!! AACCTTCCACTTTTACTTGG+TGG + chr7_4:26978943-26978962 Msa1147600:intron 40.0%
!! ACCTTCCACTTTTACTTGGT+GGG + chr7_4:26978944-26978963 Msa1147600:intron 40.0%
ACATGTGTCAGTGTCAATGT+CGG + chr7_4:26979277-26979296 Msa1147600:intron 40.0%
TCAAACACATGATAGCCTAG+GGG - chr7_4:26979359-26979378 None:intergenic 40.0%
! CATTTGTTAATAGAGACCGG+AGG - chr7_4:26979406-26979425 None:intergenic 40.0%
TGCTTATAATTGAGAGGGGA+TGG + chr7_4:26979465-26979484 Msa1147600:intron 40.0%
ATTATGCTGTCCATTGGGAT+AGG + chr7_4:26979947-26979966 Msa1147600:CDS 40.0%
TGCAAGAGCAAAATCTTCCA+TGG - chr7_4:26979978-26979997 None:intergenic 40.0%
!! ACTTGGTGTGTTGATTGCAA+AGG + chr7_4:26980155-26980174 Msa1147600:CDS 40.0%
!!! GTGTTGATTGCAAAGGCTTT+TGG + chr7_4:26980162-26980181 Msa1147600:CDS 40.0%
AAGCTATACCACTATTGCGT+CGG + chr7_4:26980302-26980321 Msa1147600:CDS 40.0%
AACAATAACCGACGCAATAG+TGG - chr7_4:26980313-26980332 None:intergenic 40.0%
TCTAATTGGATCTGTTGTGC+CGG + chr7_4:26980353-26980372 Msa1147600:CDS 40.0%
TGACAACACTGACCTGAATT+TGG + chr7_4:26980613-26980632 Msa1147600:intron 40.0%
TTTACAGGTTGTTCTTGCTC+CGG + chr7_4:26980663-26980682 Msa1147600:intron 40.0%
AGAAGAAGACCAAGTGTTAC+CGG - chr7_4:26980685-26980704 None:intergenic 40.0%
GGTCGAAGAATAGATACAAC+TGG - chr7_4:26980724-26980743 None:intergenic 40.0%
GACTTCGGTTTATAGCAAGA+GGG - chr7_4:26980795-26980814 None:intergenic 40.0%
TGACTTCGGTTTATAGCAAG+AGG - chr7_4:26980796-26980815 None:intergenic 40.0%
! CGCCTGACAAAATTTGACTT+CGG - chr7_4:26980810-26980829 None:intergenic 40.0%
! AGTCAAATTTTGTCAGGCGA+AGG + chr7_4:26980811-26980830 Msa1147600:CDS 40.0%
GAACCAATATCCTAAGGTGA+AGG - chr7_4:26980878-26980897 None:intergenic 40.0%
TCTCAAACCTTCCATCCTTA+AGG + chr7_4:26980896-26980915 Msa1147600:CDS 40.0%
AAGACAGCATACCTTAAGGA+TGG - chr7_4:26980910-26980929 None:intergenic 40.0%
GTCCAACGACTTATTCTACT+CGG + chr7_4:26981127-26981146 Msa1147600:intron 40.0%
AACCGAGTAGAATAAGTCGT+TGG - chr7_4:26981132-26981151 None:intergenic 40.0%
! TGGTACCTCTGAACCAATTT+TGG + chr7_4:26981350-26981369 Msa1147600:intron 40.0%
CAAATAGCAGATAGTGATGC+TGG + chr7_4:26981438-26981457 Msa1147600:intron 40.0%
GGAGCAGTATCATTACTCTT+TGG + chr7_4:26981600-26981619 Msa1147600:intron 40.0%
ATTGCCATAGTAGCGAAACT+AGG + chr7_4:26981707-26981726 Msa1147600:intron 40.0%
CTATCCTAGTTTCGCTACTA+TGG - chr7_4:26981714-26981733 None:intergenic 40.0%
!! AGCATCACTGTTTTTCGTAG+CGG + chr7_4:26981732-26981751 Msa1147600:intron 40.0%
TGTTGTAGCCATGGCTATAA+TGG + chr7_4:26982060-26982079 Msa1147600:CDS 40.0%
GTTGTAGCCATGGCTATAAT+GGG + chr7_4:26982061-26982080 Msa1147600:CDS 40.0%
! TCTCTGTCTTGCCTCATTTT+GGG + chr7_4:26982084-26982103 Msa1147600:CDS 40.0%
AAAACCCTTTCCCCAAAATG+AGG - chr7_4:26982098-26982117 None:intergenic 40.0%
GTGAAGGTAATGATGACAAC+AGG - chr7_4:26982132-26982151 None:intergenic 40.0%
!! CAGAACCAATTCTGCTTTTG+AGG + chr7_4:26982153-26982172 Msa1147600:CDS 40.0%
TTAGGCCTCAAAAGCAGAAT+TGG - chr7_4:26982161-26982180 None:intergenic 40.0%
TAACACTGTATACACGACCA+AGG + chr7_4:26982315-26982334 Msa1147600:three_prime_UTR 40.0%
TTTGTTCTCATTCACGGGAG+TGG + chr7_4:26978293-26978312 Msa1147600:intron 45.0%
AGCCATTGAAAAGGGAGAGA+GGG - chr7_4:26978589-26978608 None:intergenic 45.0%
AAGCCATTGAAAAGGGAGAG+AGG - chr7_4:26978590-26978609 None:intergenic 45.0%
GGGAATGGAAGCCATTGAAA+AGG - chr7_4:26978598-26978617 None:intergenic 45.0%
GAATGGAGAGAAAACGGGAA+TGG - chr7_4:26978613-26978632 None:intergenic 45.0%
GGAGTGAATGGAGAGAAAAC+GGG - chr7_4:26978618-26978637 None:intergenic 45.0%
GGGAGTGAATGGAGAGAAAA+CGG - chr7_4:26978619-26978638 None:intergenic 45.0%
AAGAGAGGGTGGAAAGATAG+AGG - chr7_4:26978660-26978679 None:intergenic 45.0%
! GCTCTTCCTTTTCCCTTCAA+AGG + chr7_4:26978688-26978707 Msa1147600:CDS 45.0%
! TGAGACCCTTTGAAGGGAAA+AGG - chr7_4:26978697-26978716 None:intergenic 45.0%
TTCCCTTCAAAGGGTCTCAA+AGG + chr7_4:26978698-26978717 Msa1147600:CDS 45.0%
TCCCTTCAAAGGGTCTCAAA+GGG + chr7_4:26978699-26978718 Msa1147600:CDS 45.0%
!! ACCCTTTGAGACCCTTTGAA+GGG - chr7_4:26978703-26978722 None:intergenic 45.0%
AAGTTTCACGGTGGAAGAGT+TGG + chr7_4:26978756-26978775 Msa1147600:CDS 45.0%
AGTTTCACGGTGGAAGAGTT+GGG + chr7_4:26978757-26978776 Msa1147600:CDS 45.0%
!! GAAAGTGTTGTTGTTGGTGG+TGG + chr7_4:26978834-26978853 Msa1147600:CDS 45.0%
!! CCTTCCACTTTTACTTGGTG+GGG + chr7_4:26978945-26978964 Msa1147600:intron 45.0%
TTAGTGATAAACGGACCCCT+AGG + chr7_4:26979341-26979360 Msa1147600:intron 45.0%
TTGTAAGACAGTACTCCCTC+CGG + chr7_4:26979387-26979406 Msa1147600:intron 45.0%
!! TATTTTAGGCCCCTCTGCTA+TGG + chr7_4:26979493-26979512 Msa1147600:intron 45.0%
TTGCATAGTCGGTACATCTG+TGG + chr7_4:26979548-26979567 Msa1147600:intron 45.0%
TGACTTTCTGAACGCATGCA+GGG + chr7_4:26979655-26979674 Msa1147600:intron 45.0%
!! ATGCAGGGTATTTTGTCTGC+AGG + chr7_4:26979670-26979689 Msa1147600:intron 45.0%
GAGTTATATGCTCCAGCACT+TGG + chr7_4:26979920-26979939 Msa1147600:CDS 45.0%
TTATATGCTCCAGCACTTGG+CGG + chr7_4:26979923-26979942 Msa1147600:CDS 45.0%
CATGGATAGTCCTATCCCAA+TGG - chr7_4:26979960-26979979 None:intergenic 45.0%
CATTGGGATAGGACTATCCA+TGG + chr7_4:26979958-26979977 Msa1147600:CDS 45.0%
AGGCCTTTACCACTTTCCAT+TGG + chr7_4:26980102-26980121 Msa1147600:intron 45.0%
GCAATCAACACACCAAGTAC+AGG - chr7_4:26980153-26980172 None:intergenic 45.0%
CAGGTCAGTGTTGTCAATCA+CGG - chr7_4:26980609-26980628 None:intergenic 45.0%
!! ATAGCAACAAAGGGCATCAC+AGG - chr7_4:26980745-26980764 None:intergenic 45.0%
CTGCCTTCACCTTAGGATAT+TGG + chr7_4:26980872-26980891 Msa1147600:CDS 45.0%
CAGCATACCTTAAGGATGGA+AGG - chr7_4:26980906-26980925 None:intergenic 45.0%
!! GAGTGGATTGCGGAAAATAG+CGG + chr7_4:26981394-26981413 Msa1147600:intron 45.0%
AAACCGCATGTGTGCCAAAT+TGG - chr7_4:26981648-26981667 None:intergenic 45.0%
ATGGCTACAACAGAACATGC+AGG - chr7_4:26982052-26982071 None:intergenic 45.0%
TGCATGTTCTGTTGTAGCCA+TGG + chr7_4:26982051-26982070 Msa1147600:CDS 45.0%
ACAGAGACCCATTATAGCCA+TGG - chr7_4:26982071-26982090 None:intergenic 45.0%
! GTCTCTGTCTTGCCTCATTT+TGG + chr7_4:26982083-26982102 Msa1147600:CDS 45.0%
! CTCTGTCTTGCCTCATTTTG+GGG + chr7_4:26982085-26982104 Msa1147600:CDS 45.0%
!! TCTTGCCTCATTTTGGGGAA+AGG + chr7_4:26982090-26982109 Msa1147600:CDS 45.0%
!! CTTGCCTCATTTTGGGGAAA+GGG + chr7_4:26982091-26982110 Msa1147600:CDS 45.0%
!! GCAGAATTGGTTCTGAGTGA+AGG - chr7_4:26982148-26982167 None:intergenic 45.0%
CAGAGATGGCTAGGAAATGT+AGG + chr7_4:26982243-26982262 Msa1147600:three_prime_UTR 45.0%
!! TGAAGGTATCTCCACTGGAG+AGG - chr7_4:26978321-26978340 None:intergenic 50.0%
GTGTGAAGAGGAATGAGGGA+GGG - chr7_4:26978565-26978584 None:intergenic 50.0%
CCATTGAAAAGGGAGAGAGG+GGG - chr7_4:26978587-26978606 None:intergenic 50.0%
GCCATTGAAAAGGGAGAGAG+GGG - chr7_4:26978588-26978607 None:intergenic 50.0%
AAGAGCGAGTGCGTAAGAGA+GGG - chr7_4:26978674-26978693 None:intergenic 50.0%
!! CACCCTTTGAGACCCTTTGA+AGG - chr7_4:26978704-26978723 None:intergenic 50.0%
CTTCAAAGGGTCTCAAAGGG+TGG + chr7_4:26978702-26978721 Msa1147600:CDS 50.0%
!! GTTGTTGGTGGTGGTGATGT+TGG + chr7_4:26978843-26978862 Msa1147600:CDS 50.0%
CCCCACCAAGTAAAAGTGGA+AGG - chr7_4:26978948-26978967 None:intergenic 50.0%
GGAACCCCACCAAGTAAAAG+TGG - chr7_4:26978952-26978971 None:intergenic 50.0%
CTGACTTTCTGAACGCATGC+AGG + chr7_4:26979654-26979673 Msa1147600:intron 50.0%
TATATGCTCCAGCACTTGGC+GGG + chr7_4:26979924-26979943 Msa1147600:CDS 50.0%
GCGGGATTATGCTGTCCATT+GGG + chr7_4:26979942-26979961 Msa1147600:CDS 50.0%
GTCCTCACAGCTTGTGTTTC+AGG + chr7_4:26980213-26980232 Msa1147600:CDS 50.0%
CTCCTGAAACACAAGCTGTG+AGG - chr7_4:26980218-26980237 None:intergenic 50.0%
GACATGGCAACTGCATCAAC+CGG - chr7_4:26980375-26980394 None:intergenic 50.0%
!! AGAGGCGCTATAGTGCTACA+AGG + chr7_4:26980465-26980484 Msa1147600:intron 50.0%
! GCGCTATAGCATAGCGGAAT+TGG + chr7_4:26980560-26980579 Msa1147600:intron 50.0%
GTTCTTGCTCCGGTAACACT+TGG + chr7_4:26980673-26980692 Msa1147600:CDS 50.0%
! AGGTCTTCGATTGGTTGCTC+CGG + chr7_4:26980831-26980850 Msa1147600:CDS 50.0%
ACAGCCCAGCAAGAATGAGA+AGG - chr7_4:26981192-26981211 None:intergenic 50.0%
GGTCCAATTTGGCACACATG+CGG + chr7_4:26981642-26981661 Msa1147600:intron 50.0%
TTGTCACAGGCAGGAAGAAC+AGG + chr7_4:26981931-26981950 Msa1147600:intron 50.0%
GCTACAACAGAACATGCAGG+AGG - chr7_4:26982049-26982068 None:intergenic 50.0%
GTACGAGTGTGAATGAGGGG+AGG - chr7_4:26978485-26978504 None:intergenic 55.0%
GGTGTGAAGAGGAATGAGGG+AGG - chr7_4:26978566-26978585 None:intergenic 55.0%
! GGGGGTGTGAAGAGGAATGA+GGG - chr7_4:26978569-26978588 None:intergenic 55.0%
! AGGGGGTGTGAAGAGGAATG+AGG - chr7_4:26978570-26978589 None:intergenic 55.0%
! CCCCCTCTCTCCCTTTTCAA+TGG + chr7_4:26978584-26978603 Msa1147600:exon 55.0%
GAAGAGCGAGTGCGTAAGAG+AGG - chr7_4:26978675-26978694 None:intergenic 55.0%
GGTCACGTGTCAGACACATG+AGG + chr7_4:26979298-26979317 Msa1147600:intron 55.0%
AGCATAATCCCGCCAAGTGC+TGG - chr7_4:26979935-26979954 None:intergenic 55.0%
GGCGGGATTATGCTGTCCAT+TGG + chr7_4:26979941-26979960 Msa1147600:CDS 55.0%
GCGGATGCGCTATAGCATAG+CGG + chr7_4:26980554-26980573 Msa1147600:intron 55.0%
GTCAGGCGAAGGTCTTCGAT+TGG + chr7_4:26980822-26980841 Msa1147600:CDS 55.0%
CATGCTGCTGCCTTCACCTT+AGG + chr7_4:26980865-26980884 Msa1147600:CDS 55.0%
GGCAGGAAGAACAGGTGAGT+AGG + chr7_4:26981939-26981958 Msa1147600:intron 55.0%
ATGCAGAGCTCCACACTTGC+AGG + chr7_4:26981983-26982002 Msa1147600:CDS 55.0%
TGCAAGAAGGCCTGCAAGTG+TGG - chr7_4:26981996-26982015 None:intergenic 55.0%
AGCGAGTGCGTAAGAGAGGG+TGG - chr7_4:26978671-26978690 None:intergenic 60.0%
GTCGGTACATCTGTGGCCGT+TGG + chr7_4:26979555-26979574 Msa1147600:intron 60.0%
CGGGAGTGGATCCTCTCCAG+TGG + chr7_4:26978307-26978326 Msa1147600:intron 65.0%
! GGGAGAGAGGGGGTGTGAAG+AGG - chr7_4:26978577-26978596 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 26978246 26982457 26978246 ID=Msa1147600;Name=Msa1147600
chr7_4 mRNA 26978246 26982457 26978246 ID=Msa1147600-mRNA-1;Parent=Msa1147600;Name=Msa1147600-mRNA-1;_AED=0.18;_eAED=0.18;_QI=168|1|1|1|0.8|0.66|6|277|416
chr7_4 exon 26978246 26978307 26978246 ID=Msa1147600-mRNA-1:exon:6585;Parent=Msa1147600-mRNA-1
chr7_4 exon 26978497 26978961 26978497 ID=Msa1147600-mRNA-1:exon:6586;Parent=Msa1147600-mRNA-1
chr7_4 exon 26979910 26980005 26979910 ID=Msa1147600-mRNA-1:exon:6587;Parent=Msa1147600-mRNA-1
chr7_4 exon 26980104 26980410 26980104 ID=Msa1147600-mRNA-1:exon:6588;Parent=Msa1147600-mRNA-1
chr7_4 exon 26980670 26980917 26980670 ID=Msa1147600-mRNA-1:exon:6589;Parent=Msa1147600-mRNA-1
chr7_4 exon 26981940 26982457 26981940 ID=Msa1147600-mRNA-1:exon:6590;Parent=Msa1147600-mRNA-1
chr7_4 five_prime_UTR 26978246 26978307 26978246 ID=Msa1147600-mRNA-1:five_prime_utr;Parent=Msa1147600-mRNA-1
chr7_4 five_prime_UTR 26978497 26978602 26978497 ID=Msa1147600-mRNA-1:five_prime_utr;Parent=Msa1147600-mRNA-1
chr7_4 CDS 26978603 26978961 26978603 ID=Msa1147600-mRNA-1:cds;Parent=Msa1147600-mRNA-1
chr7_4 CDS 26979910 26980005 26979910 ID=Msa1147600-mRNA-1:cds;Parent=Msa1147600-mRNA-1
chr7_4 CDS 26980104 26980410 26980104 ID=Msa1147600-mRNA-1:cds;Parent=Msa1147600-mRNA-1
chr7_4 CDS 26980670 26980917 26980670 ID=Msa1147600-mRNA-1:cds;Parent=Msa1147600-mRNA-1
chr7_4 CDS 26981940 26982180 26981940 ID=Msa1147600-mRNA-1:cds;Parent=Msa1147600-mRNA-1
chr7_4 three_prime_UTR 26982181 26982457 26982181 ID=Msa1147600-mRNA-1:three_prime_utr;Parent=Msa1147600-mRNA-1
Gene Sequence

>Msa1147600

ATGGCTTCCATTCCCGTTTTCTCTCCATTCACTCCCATGAAACAAAAGCATAAACCTCTATCTTTCCACCCTCTCTTACGCACTCGCTCTTCCTTTTCCCTTCAAAGGGTCTCAAAGGGTGGCTCAATATCGAGTTTTGCTTGCTCAACTTCTAAGTTTCACGGTGGAAGAGTTGGGTTTAACCATATTGAAGGGAAATCTTCGTTTCTTAAATTTGGTGTTGATGAAAGTGAAAGTGTTGTTGTTGGTGGTGGTGATGTTGGTGAAAGAGATTGGTCTCAGATTTTGTCTGCATTGCTTCCTTTTGTTGTTGCTGTTACTGCTGTTGCTGCTCTTTCTCAACCTTCCACTTTTACTTGGGTATCTAAAGAGTTATATGCTCCAGCACTTGGCGGGATTATGCTGTCCATTGGGATAGGACTATCCATGGAAGATTTTGCTCTTGCATTCAAAAGGCCTTTACCACTTTCCATTGGATTTATTGCTCAATATGTACTGAAACCTGTACTTGGTGTGTTGATTGCAAAGGCTTTTGGCTTGCCTAGAATGTTTTATGCAGGCTTTGTCCTCACAGCTTGTGTTTCAGGAGCTCAGTTATCTAGCTATGCAAGCTTTATAAGCAAAGGGGATGTAGCCTTATGCATTGTTCTTACAAGCTATACCACTATTGCGTCGGTTATTGTTACGCCTTTATTAACCGGTCTTCTAATTGGATCTGTTGTGCCGGTTGATGCAGTTGCCATGTCAAAGTCAATATTACAGGTTGTTCTTGCTCCGGTAACACTTGGTCTTCTTCTCAATACGTATGCAAAGCCAGTTGTATCTATTCTTCGACCTGTGATGCCCTTTGTTGCTATGATTTGTACTTCATTGTGCATTGGCAGCCCTCTTGCTATAAACCGAAGTCAAATTTTGTCAGGCGAAGGTCTTCGATTGGTTGCTCCGGTATTAATATTTCATGCTGCTGCCTTCACCTTAGGATATTGGTTCTCAAACCTTCCATCCTTAAGGCAGGAAGAACAGGTGAGTAGGACAATTTCATTATGCACTGGAATGCAGAGCTCCACACTTGCAGGCCTTCTTGCAACTCAATTTTTGGGAAGTAGTCAAGCAGTTCCTCCTGCATGTTCTGTTGTAGCCATGGCTATAATGGGTCTCTGTCTTGCCTCATTTTGGGGAAAGGGTTTTGAAATTAAAAACCTGTTGTCATCATTACCTTCACTCAGAACCAATTCTGCTTTTGAGGCCTAA

Protein sequence

>Msa1147600

MASIPVFSPFTPMKQKHKPLSFHPLLRTRSSFSLQRVSKGGSISSFACSTSKFHGGRVGFNHIEGKSSFLKFGVDESESVVVGGGDVGERDWSQILSALLPFVVAVTAVAALSQPSTFTWVSKELYAPALGGIMLSIGIGLSMEDFALAFKRPLPLSIGFIAQYVLKPVLGVLIAKAFGLPRMFYAGFVLTACVSGAQLSSYASFISKGDVALCIVLTSYTTIASVIVTPLLTGLLIGSVVPVDAVAMSKSILQVVLAPVTLGLLLNTYAKPVVSILRPVMPFVAMICTSLCIGSPLAINRSQILSGEGLRLVAPVLIFHAAAFTLGYWFSNLPSLRQEEQVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVVAMAIMGLCLASFWGKGFEIKNLLSSLPSLRTNSAFEA*