Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404050 | AES61532.1 | 96.491 | 114 | 2 | 2 | 11 | 122 | 1 | 114 | 5.33e-71 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404050 | G7IAF1 | 96.491 | 114 | 2 | 2 | 11 | 122 | 1 | 114 | 2.55e-71 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0404050 | 0.851923 | 6.467307e-61 | -8.615850e-47 |
| Msa0010500 | Msa0404050 | 0.842820 | 2.047175e-58 | -8.615850e-47 |
| Msa0059950 | Msa0404050 | 0.842250 | 2.900889e-58 | -8.615850e-47 |
| Msa0126880 | Msa0404050 | 0.813709 | 2.230987e-51 | -8.615850e-47 |
| Msa0144430 | Msa0404050 | 0.809951 | 1.467692e-50 | -8.615850e-47 |
| Msa0404050 | Msa0569780 | 0.801090 | 1.061003e-48 | -8.615850e-47 |
| Msa0404050 | Msa0569960 | 0.800193 | 1.616522e-48 | -8.615850e-47 |
| Msa0404050 | Msa0657120 | 0.833501 | 5.142930e-56 | -8.615850e-47 |
| Msa0404050 | Msa0659790 | 0.834430 | 3.011772e-56 | -8.615850e-47 |
| Msa0404050 | Msa0701100 | 0.835315 | 1.802734e-56 | -8.615850e-47 |
| Msa0404050 | Msa0974950 | 0.802607 | 5.178154e-49 | -8.615850e-47 |
| Msa0404050 | Msa1093100 | 0.827157 | 1.826496e-54 | -8.615850e-47 |
| Msa0404050 | Msa1206650 | 0.807483 | 4.943885e-50 | -8.615850e-47 |
| Msa0404050 | Msa1277410 | 0.804463 | 2.134316e-49 | -8.615850e-47 |
| Msa0404050 | Msa1307160 | 0.801486 | 8.803612e-49 | -8.615850e-47 |
| Msa0404050 | Msa1307180 | 0.841016 | 6.133371e-58 | -8.615850e-47 |
| Msa0404050 | Msa1316360 | 0.841303 | 5.157761e-58 | -8.615850e-47 |
| Msa0404050 | Msa1336560 | 0.803341 | 3.651560e-49 | -8.615850e-47 |
| Msa0404050 | Msa1352890 | 0.803747 | 3.007976e-49 | -8.615850e-47 |
| Msa0404050 | Msa1382020 | 0.841225 | 5.407016e-58 | -8.615850e-47 |
| Msa0404050 | Msa1395730 | 0.805380 | 1.372859e-49 | -8.615850e-47 |
| Msa0404050 | Msa1433010 | 0.886396 | 3.548550e-72 | -8.615850e-47 |
| Msa0404050 | Msa1459960 | 0.801258 | 9.803306e-49 | -8.615850e-47 |
| Msa0404050 | Msa1462470 | 0.832135 | 1.123685e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404050 | MtrunA17_Chr1g0193481 | 96.491 | 114 | 2 | 2 | 11 | 122 | 1 | 114 | 4.91e-75 | 218 |
| Msa0404050 | MtrunA17_Chr7g0271161 | 54.622 | 119 | 38 | 4 | 5 | 122 | 11 | 114 | 1.79e-31 | 107 |
| Msa0404050 | MtrunA17_Chr7g0271171 | 58.416 | 101 | 35 | 4 | 1 | 98 | 3 | 99 | 1.72e-30 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404050 | AT5G26731.1 | 49.275 | 69 | 32 | 2 | 19 | 86 | 6 | 72 | 8.05e-12 | 57.8 |
Find 25 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCTTCCTCGTGTTTA+TGG | 0.149688 | 3_2:-34729845 | Msa0404050:CDS |
| TTCTTTATACTATTGTTTAA+TGG | 0.218332 | 3_2:-34729692 | Msa0404050:three_prime_UTR |
| TACAGAACTGGTAGCTTCTA+AGG | 0.267532 | 3_2:+34730057 | None:intergenic |
| AGTCTGACAGAAAGAATTAA+AGG | 0.303186 | 3_2:-34730026 | Msa0404050:CDS |
| TTGTTTAGGACTGAATCTTT+TGG | 0.327957 | 3_2:-34730134 | Msa0404050:CDS |
| TGACTATGAATCCATTGTTT+AGG | 0.347576 | 3_2:-34730148 | Msa0404050:CDS |
| ATTATTCTTGACACAAATAT+TGG | 0.365022 | 3_2:-34729720 | Msa0404050:three_prime_UTR |
| CTTCCTCGTGTTTATGGTAG+TGG | 0.375838 | 3_2:-34729839 | Msa0404050:exon |
| GACTCTTCTTTCTACAGAAC+TGG | 0.387643 | 3_2:+34730045 | None:intergenic |
| AAGTTGTATGGTTAAAGTTA+AGG | 0.414266 | 3_2:-34729983 | Msa0404050:CDS |
| ACGAGGAAGAATCAACTTTA+CGG | 0.429447 | 3_2:+34729853 | None:intergenic |
| TAGTCACACTTCCCATGTCT+TGG | 0.452486 | 3_2:+34730165 | None:intergenic |
| ATCATGGTGTAGTTCTGATC+AGG | 0.472496 | 3_2:+34730098 | None:intergenic |
| TAACTGTCTCTTCTCTATCA+TGG | 0.494793 | 3_2:+34730082 | None:intergenic |
| TTCGTGCTAAGAAAGTTGTA+TGG | 0.497025 | 3_2:-34729995 | Msa0404050:CDS |
| AAGACAAATGAATTACAGAC+AGG | 0.551965 | 3_2:+34729800 | None:intergenic |
| GCTGTGAAAACCTTCTTCTA+CGG | 0.552047 | 3_2:+34729901 | None:intergenic |
| TGCTCGTGGACTAAGAAAGT+TGG | 0.556478 | 3_2:-34729958 | Msa0404050:CDS |
| AAGAATCAACTTTACGGTGG+TGG | 0.557630 | 3_2:+34729859 | None:intergenic |
| TCAAAGTTCAAACCAAGACA+TGG | 0.558259 | 3_2:-34730177 | Msa0404050:CDS |
| AAAGATTCAGTCCTAAACAA+TGG | 0.590266 | 3_2:+34730137 | None:intergenic |
| CAAAGTTCAAACCAAGACAT+GGG | 0.635268 | 3_2:-34730176 | Msa0404050:CDS |
| TTAAAGTTAAGGTATGCTCG+TGG | 0.673922 | 3_2:-34729972 | Msa0404050:CDS |
| AGGAAGAATCAACTTTACGG+TGG | 0.745414 | 3_2:+34729856 | None:intergenic |
| TTACCACTACCATAAACACG+AGG | 0.787473 | 3_2:+34729836 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATAAAAATAAAAGTTTA+GGG | + | chr3_2:34730058-34730077 | None:intergenic | 10.0% |
| !! | TTGATAAAAATAAAAGTTTA+GGG | + | chr3_2:34730058-34730077 | None:intergenic | 10.0% |
| !! | TTATCTTAATATTCCAATTA+AGG | + | chr3_2:34729996-34730015 | None:intergenic | 15.0% |
| !! | ATATTAAGATAAATCATACT+TGG | - | chr3_2:34730004-34730023 | Msa0404050:CDS | 15.0% |
| !! | CTTGATAAAAATAAAAGTTT+AGG | + | chr3_2:34730059-34730078 | None:intergenic | 15.0% |
| !! | TTCTTTATACTATTGTTTAA+TGG | - | chr3_2:34731116-34731135 | Msa0404050:intron | 15.0% |
| !! | TTATCTTAATATTCCAATTA+AGG | + | chr3_2:34729996-34730015 | None:intergenic | 15.0% |
| !! | ATATTAAGATAAATCATACT+TGG | - | chr3_2:34730004-34730023 | Msa0404050:CDS | 15.0% |
| !! | CTTGATAAAAATAAAAGTTT+AGG | + | chr3_2:34730059-34730078 | None:intergenic | 15.0% |
| !! | TTCTTTATACTATTGTTTAA+TGG | - | chr3_2:34731116-34731135 | Msa0404050:intron | 15.0% |
| !!! | TAATTATTTTTTGGGGATTT+TGG | + | chr3_2:34729815-34729834 | None:intergenic | 20.0% |
| !!! | TGCCACAATAATTATTTTTT+GGG | + | chr3_2:34729823-34729842 | None:intergenic | 20.0% |
| !! | TTATCGATGTTTAATCAAAA+AGG | + | chr3_2:34730107-34730126 | None:intergenic | 20.0% |
| !!! | AGCACATTATTTTAATGTAT+AGG | + | chr3_2:34730330-34730349 | None:intergenic | 20.0% |
| !! | GAATATGAATATGAAGTATA+AGG | + | chr3_2:34730487-34730506 | None:intergenic | 20.0% |
| !! | AAGAAAAAGAAGAATAAAAG+GGG | + | chr3_2:34730514-34730533 | None:intergenic | 20.0% |
| !! | GAAGAAAAAGAAGAATAAAA+GGG | + | chr3_2:34730515-34730534 | None:intergenic | 20.0% |
| !! | TGAAGAAAAAGAAGAATAAA+AGG | + | chr3_2:34730516-34730535 | None:intergenic | 20.0% |
| !!! | TAAGTTTTAAGATTAGAGTT+TGG | - | chr3_2:34731045-34731064 | Msa0404050:intron | 20.0% |
| !! | ATTATTCTTGACACAAATAT+TGG | - | chr3_2:34731088-34731107 | Msa0404050:intron | 20.0% |
| !!! | TAATTATTTTTTGGGGATTT+TGG | + | chr3_2:34729815-34729834 | None:intergenic | 20.0% |
| !!! | TGCCACAATAATTATTTTTT+GGG | + | chr3_2:34729823-34729842 | None:intergenic | 20.0% |
| !! | TTATCGATGTTTAATCAAAA+AGG | + | chr3_2:34730107-34730126 | None:intergenic | 20.0% |
| !!! | AGCACATTATTTTAATGTAT+AGG | + | chr3_2:34730330-34730349 | None:intergenic | 20.0% |
| !! | GAATATGAATATGAAGTATA+AGG | + | chr3_2:34730487-34730506 | None:intergenic | 20.0% |
| !! | AAGAAAAAGAAGAATAAAAG+GGG | + | chr3_2:34730514-34730533 | None:intergenic | 20.0% |
| !! | GAAGAAAAAGAAGAATAAAA+GGG | + | chr3_2:34730515-34730534 | None:intergenic | 20.0% |
| !! | TGAAGAAAAAGAAGAATAAA+AGG | + | chr3_2:34730516-34730535 | None:intergenic | 20.0% |
| !!! | TAAGTTTTAAGATTAGAGTT+TGG | - | chr3_2:34731045-34731064 | Msa0404050:intron | 20.0% |
| !! | ATTATTCTTGACACAAATAT+TGG | - | chr3_2:34731088-34731107 | Msa0404050:intron | 20.0% |
| ! | TCCCCAAAAAATAATTATTG+TGG | - | chr3_2:34729818-34729837 | Msa0404050:three_prime_UTR | 25.0% |
| !!! | GCCACAATAATTATTTTTTG+GGG | + | chr3_2:34729822-34729841 | None:intergenic | 25.0% |
| !!! | GTGCCACAATAATTATTTTT+TGG | + | chr3_2:34729824-34729843 | None:intergenic | 25.0% |
| !!! | ACTCTCTTTTTTTTGTTACA+AGG | + | chr3_2:34730198-34730217 | None:intergenic | 25.0% |
| ! | TTGTAACAAAAAAAAGAGAG+TGG | - | chr3_2:34730197-34730216 | Msa0404050:intron | 25.0% |
| !! | TTCTTCTTTCTTAAGTATTG+GGG | + | chr3_2:34730354-34730373 | None:intergenic | 25.0% |
| ! | CTTCTTCTTTCTTAAGTATT+GGG | + | chr3_2:34730355-34730374 | None:intergenic | 25.0% |
| ! | TCTTCTTCTTTCTTAAGTAT+TGG | + | chr3_2:34730356-34730375 | None:intergenic | 25.0% |
| ! | AGAAAAAGAAGAATAAAAGG+GGG | + | chr3_2:34730513-34730532 | None:intergenic | 25.0% |
| !!! | ACTTTGTAGTTTTTCAAAGA+TGG | + | chr3_2:34730557-34730576 | None:intergenic | 25.0% |
| ! | AAGTTGTATGGTTAAAGTTA+AGG | - | chr3_2:34730825-34730844 | Msa0404050:intron | 25.0% |
| !!! | TTTTTTCCAAGGTTTAAATG+CGG | - | chr3_2:34730875-34730894 | Msa0404050:intron | 25.0% |
| ! | TCCCCAAAAAATAATTATTG+TGG | - | chr3_2:34729818-34729837 | Msa0404050:three_prime_UTR | 25.0% |
| !!! | GCCACAATAATTATTTTTTG+GGG | + | chr3_2:34729822-34729841 | None:intergenic | 25.0% |
| !!! | GTGCCACAATAATTATTTTT+TGG | + | chr3_2:34729824-34729843 | None:intergenic | 25.0% |
| !!! | ACTCTCTTTTTTTTGTTACA+AGG | + | chr3_2:34730198-34730217 | None:intergenic | 25.0% |
| ! | TTGTAACAAAAAAAAGAGAG+TGG | - | chr3_2:34730197-34730216 | Msa0404050:intron | 25.0% |
| !! | TTCTTCTTTCTTAAGTATTG+GGG | + | chr3_2:34730354-34730373 | None:intergenic | 25.0% |
| ! | CTTCTTCTTTCTTAAGTATT+GGG | + | chr3_2:34730355-34730374 | None:intergenic | 25.0% |
| ! | TCTTCTTCTTTCTTAAGTAT+TGG | + | chr3_2:34730356-34730375 | None:intergenic | 25.0% |
| ! | AGAAAAAGAAGAATAAAAGG+GGG | + | chr3_2:34730513-34730532 | None:intergenic | 25.0% |
| !!! | ACTTTGTAGTTTTTCAAAGA+TGG | + | chr3_2:34730557-34730576 | None:intergenic | 25.0% |
| ! | AAGTTGTATGGTTAAAGTTA+AGG | - | chr3_2:34730825-34730844 | Msa0404050:intron | 25.0% |
| !!! | TTTTTTCCAAGGTTTAAATG+CGG | - | chr3_2:34730875-34730894 | Msa0404050:intron | 25.0% |
| ATTCGAATTACACGTGTAAA+TGG | + | chr3_2:34729687-34729706 | None:intergenic | 30.0% | |
| AGTAATTCGAATTACTTGGA+GGG | + | chr3_2:34729788-34729807 | None:intergenic | 30.0% | |
| AAGTAATTCGAATTACTTGG+AGG | + | chr3_2:34729789-34729808 | None:intergenic | 30.0% | |
| CTGAAGTAATTCGAATTACT+TGG | + | chr3_2:34729792-34729811 | None:intergenic | 30.0% | |
| GGAAATAACTCATCTTAATG+CGG | - | chr3_2:34729875-34729894 | Msa0404050:CDS | 30.0% | |
| !! | AAAAATGGCTTTGTATTTGC+TGG | + | chr3_2:34729934-34729953 | None:intergenic | 30.0% |
| AATACGCATAATCAAAGTAG+GGG | + | chr3_2:34729959-34729978 | None:intergenic | 30.0% | |
| GAATACGCATAATCAAAGTA+GGG | + | chr3_2:34729960-34729979 | None:intergenic | 30.0% | |
| TGAATACGCATAATCAAAGT+AGG | + | chr3_2:34729961-34729980 | None:intergenic | 30.0% | |
| ATATGCATATGAGCCTTAAT+TGG | - | chr3_2:34729980-34729999 | Msa0404050:CDS | 30.0% | |
| ! | TAAGCTCTTCTTCTTTTAGA+TGG | + | chr3_2:34730276-34730295 | None:intergenic | 30.0% |
| TATAATAACACGTTGACAAC+TGG | + | chr3_2:34730300-34730319 | None:intergenic | 30.0% | |
| AAACAAAGCAATTCCAAATC+AGG | - | chr3_2:34730444-34730463 | Msa0404050:intron | 30.0% | |
| TGACTATGAATCCATTGTTT+AGG | - | chr3_2:34730660-34730679 | Msa0404050:intron | 30.0% | |
| AAAGATTCAGTCCTAAACAA+TGG | + | chr3_2:34730674-34730693 | None:intergenic | 30.0% | |
| !! | TTGTTTAGGACTGAATCTTT+TGG | - | chr3_2:34730674-34730693 | Msa0404050:intron | 30.0% |
| AGTCTGACAGAAAGAATTAA+AGG | - | chr3_2:34730782-34730801 | Msa0404050:intron | 30.0% | |
| TAAAAACCGCATTTAAACCT+TGG | + | chr3_2:34730884-34730903 | None:intergenic | 30.0% | |
| ! | GTTTTTATTACCGTAGAAGA+AGG | - | chr3_2:34730897-34730916 | Msa0404050:intron | 30.0% |
| AAGACAAATGAATTACAGAC+AGG | + | chr3_2:34731011-34731030 | None:intergenic | 30.0% | |
| !! | CTATTGTTTAATGGTTTTGC+TGG | - | chr3_2:34731125-34731144 | Msa0404050:intron | 30.0% |
| ATTCGAATTACACGTGTAAA+TGG | + | chr3_2:34729687-34729706 | None:intergenic | 30.0% | |
| AGTAATTCGAATTACTTGGA+GGG | + | chr3_2:34729788-34729807 | None:intergenic | 30.0% | |
| AAGTAATTCGAATTACTTGG+AGG | + | chr3_2:34729789-34729808 | None:intergenic | 30.0% | |
| CTGAAGTAATTCGAATTACT+TGG | + | chr3_2:34729792-34729811 | None:intergenic | 30.0% | |
| GGAAATAACTCATCTTAATG+CGG | - | chr3_2:34729875-34729894 | Msa0404050:CDS | 30.0% | |
| !! | AAAAATGGCTTTGTATTTGC+TGG | + | chr3_2:34729934-34729953 | None:intergenic | 30.0% |
| AATACGCATAATCAAAGTAG+GGG | + | chr3_2:34729959-34729978 | None:intergenic | 30.0% | |
| GAATACGCATAATCAAAGTA+GGG | + | chr3_2:34729960-34729979 | None:intergenic | 30.0% | |
| TGAATACGCATAATCAAAGT+AGG | + | chr3_2:34729961-34729980 | None:intergenic | 30.0% | |
| ATATGCATATGAGCCTTAAT+TGG | - | chr3_2:34729980-34729999 | Msa0404050:CDS | 30.0% | |
| ! | TAAGCTCTTCTTCTTTTAGA+TGG | + | chr3_2:34730276-34730295 | None:intergenic | 30.0% |
| TATAATAACACGTTGACAAC+TGG | + | chr3_2:34730300-34730319 | None:intergenic | 30.0% | |
| AAACAAAGCAATTCCAAATC+AGG | - | chr3_2:34730444-34730463 | Msa0404050:intron | 30.0% | |
| TGACTATGAATCCATTGTTT+AGG | - | chr3_2:34730660-34730679 | Msa0404050:intron | 30.0% | |
| AAAGATTCAGTCCTAAACAA+TGG | + | chr3_2:34730674-34730693 | None:intergenic | 30.0% | |
| !! | TTGTTTAGGACTGAATCTTT+TGG | - | chr3_2:34730674-34730693 | Msa0404050:intron | 30.0% |
| AGTCTGACAGAAAGAATTAA+AGG | - | chr3_2:34730782-34730801 | Msa0404050:intron | 30.0% | |
| TAAAAACCGCATTTAAACCT+TGG | + | chr3_2:34730884-34730903 | None:intergenic | 30.0% | |
| ! | GTTTTTATTACCGTAGAAGA+AGG | - | chr3_2:34730897-34730916 | Msa0404050:intron | 30.0% |
| AAGACAAATGAATTACAGAC+AGG | + | chr3_2:34731011-34731030 | None:intergenic | 30.0% | |
| !! | CTATTGTTTAATGGTTTTGC+TGG | - | chr3_2:34731125-34731144 | Msa0404050:intron | 30.0% |
| ATCAAAGTAGGGGACAAAAA+TGG | + | chr3_2:34729949-34729968 | None:intergenic | 35.0% | |
| ! | CATCGATAATTTGCATGCTT+TGG | - | chr3_2:34730118-34730137 | Msa0404050:CDS | 35.0% |
| TTTGTTACAAGGAGAAAGCA+TGG | + | chr3_2:34730187-34730206 | None:intergenic | 35.0% | |
| ! | CTCTTCTTCTTTTAGATGGA+CGG | + | chr3_2:34730272-34730291 | None:intergenic | 35.0% |
| AAAGTTCAACGAACCTGATT+TGG | + | chr3_2:34730460-34730479 | None:intergenic | 35.0% | |
| ! | GAACTTTGAAGAACTCTGTT+TGG | + | chr3_2:34730620-34730639 | None:intergenic | 35.0% |
| TCAAAGTTCAAACCAAGACA+TGG | - | chr3_2:34730631-34730650 | Msa0404050:intron | 35.0% | |
| CAAAGTTCAAACCAAGACAT+GGG | - | chr3_2:34730632-34730651 | Msa0404050:intron | 35.0% | |
| TAACTGTCTCTTCTCTATCA+TGG | + | chr3_2:34730729-34730748 | None:intergenic | 35.0% | |
| TTCGTGCTAAGAAAGTTGTA+TGG | - | chr3_2:34730813-34730832 | Msa0404050:intron | 35.0% | |
| TTAAAGTTAAGGTATGCTCG+TGG | - | chr3_2:34730836-34730855 | Msa0404050:intron | 35.0% | |
| !!! | GAAAGTTGGTGTTTTTTCCA+AGG | - | chr3_2:34730864-34730883 | Msa0404050:intron | 35.0% |
| ACGAGGAAGAATCAACTTTA+CGG | + | chr3_2:34730958-34730977 | None:intergenic | 35.0% | |
| TTGATTCTTCCTCGTGTTTA+TGG | - | chr3_2:34730963-34730982 | Msa0404050:intron | 35.0% | |
| !! | TGTTTAATGGTTTTGCTGGT+AGG | - | chr3_2:34731129-34731148 | Msa0404050:intron | 35.0% |
| ATCAAAGTAGGGGACAAAAA+TGG | + | chr3_2:34729949-34729968 | None:intergenic | 35.0% | |
| ! | CATCGATAATTTGCATGCTT+TGG | - | chr3_2:34730118-34730137 | Msa0404050:CDS | 35.0% |
| TTTGTTACAAGGAGAAAGCA+TGG | + | chr3_2:34730187-34730206 | None:intergenic | 35.0% | |
| ! | CTCTTCTTCTTTTAGATGGA+CGG | + | chr3_2:34730272-34730291 | None:intergenic | 35.0% |
| AAAGTTCAACGAACCTGATT+TGG | + | chr3_2:34730460-34730479 | None:intergenic | 35.0% | |
| ! | GAACTTTGAAGAACTCTGTT+TGG | + | chr3_2:34730620-34730639 | None:intergenic | 35.0% |
| TCAAAGTTCAAACCAAGACA+TGG | - | chr3_2:34730631-34730650 | Msa0404050:intron | 35.0% | |
| CAAAGTTCAAACCAAGACAT+GGG | - | chr3_2:34730632-34730651 | Msa0404050:intron | 35.0% | |
| TAACTGTCTCTTCTCTATCA+TGG | + | chr3_2:34730729-34730748 | None:intergenic | 35.0% | |
| TTCGTGCTAAGAAAGTTGTA+TGG | - | chr3_2:34730813-34730832 | Msa0404050:intron | 35.0% | |
| TTAAAGTTAAGGTATGCTCG+TGG | - | chr3_2:34730836-34730855 | Msa0404050:intron | 35.0% | |
| !!! | GAAAGTTGGTGTTTTTTCCA+AGG | - | chr3_2:34730864-34730883 | Msa0404050:intron | 35.0% |
| ACGAGGAAGAATCAACTTTA+CGG | + | chr3_2:34730958-34730977 | None:intergenic | 35.0% | |
| TTGATTCTTCCTCGTGTTTA+TGG | - | chr3_2:34730963-34730982 | Msa0404050:intron | 35.0% | |
| !! | TGTTTAATGGTTTTGCTGGT+AGG | - | chr3_2:34731129-34731148 | Msa0404050:intron | 35.0% |
| CGAATCATGAAGTTTGTGTC+AGG | + | chr3_2:34729745-34729764 | None:intergenic | 40.0% | |
| CGTAAATTTAACGCGAATGC+AGG | - | chr3_2:34729854-34729873 | Msa0404050:CDS | 40.0% | |
| AAGGAGACTCTGACTTTACT+CGG | + | chr3_2:34730088-34730107 | None:intergenic | 40.0% | |
| AGAGTGGAAGATGTTTGCAA+TGG | - | chr3_2:34730213-34730232 | Msa0404050:intron | 40.0% | |
| TAAGACTTTAAGCCACTGTG+TGG | - | chr3_2:34730396-34730415 | Msa0404050:intron | 40.0% | |
| CAAAGATGGAGACAAATACG+TGG | + | chr3_2:34730543-34730562 | None:intergenic | 40.0% | |
| !! | ATCATGGTGTAGTTCTGATC+AGG | + | chr3_2:34730713-34730732 | None:intergenic | 40.0% |
| TACAGAACTGGTAGCTTCTA+AGG | + | chr3_2:34730754-34730773 | None:intergenic | 40.0% | |
| GACTCTTCTTTCTACAGAAC+TGG | + | chr3_2:34730766-34730785 | None:intergenic | 40.0% | |
| GCTGTGAAAACCTTCTTCTA+CGG | + | chr3_2:34730910-34730929 | None:intergenic | 40.0% | |
| AAGAATCAACTTTACGGTGG+TGG | + | chr3_2:34730952-34730971 | None:intergenic | 40.0% | |
| AGGAAGAATCAACTTTACGG+TGG | + | chr3_2:34730955-34730974 | None:intergenic | 40.0% | |
| TTACCACTACCATAAACACG+AGG | + | chr3_2:34730975-34730994 | None:intergenic | 40.0% | |
| CGAATCATGAAGTTTGTGTC+AGG | + | chr3_2:34729745-34729764 | None:intergenic | 40.0% | |
| CGTAAATTTAACGCGAATGC+AGG | - | chr3_2:34729854-34729873 | Msa0404050:CDS | 40.0% | |
| AAGGAGACTCTGACTTTACT+CGG | + | chr3_2:34730088-34730107 | None:intergenic | 40.0% | |
| AGAGTGGAAGATGTTTGCAA+TGG | - | chr3_2:34730213-34730232 | Msa0404050:intron | 40.0% | |
| TAAGACTTTAAGCCACTGTG+TGG | - | chr3_2:34730396-34730415 | Msa0404050:intron | 40.0% | |
| CAAAGATGGAGACAAATACG+TGG | + | chr3_2:34730543-34730562 | None:intergenic | 40.0% | |
| !! | ATCATGGTGTAGTTCTGATC+AGG | + | chr3_2:34730713-34730732 | None:intergenic | 40.0% |
| TACAGAACTGGTAGCTTCTA+AGG | + | chr3_2:34730754-34730773 | None:intergenic | 40.0% | |
| GACTCTTCTTTCTACAGAAC+TGG | + | chr3_2:34730766-34730785 | None:intergenic | 40.0% | |
| GCTGTGAAAACCTTCTTCTA+CGG | + | chr3_2:34730910-34730929 | None:intergenic | 40.0% | |
| AAGAATCAACTTTACGGTGG+TGG | + | chr3_2:34730952-34730971 | None:intergenic | 40.0% | |
| AGGAAGAATCAACTTTACGG+TGG | + | chr3_2:34730955-34730974 | None:intergenic | 40.0% | |
| TTACCACTACCATAAACACG+AGG | + | chr3_2:34730975-34730994 | None:intergenic | 40.0% | |
| TTGGAGGGTGATTCGAATCA+GGG | + | chr3_2:34729773-34729792 | None:intergenic | 45.0% | |
| ! | GAGTGACTACAAAGTACCAG+TGG | - | chr3_2:34729899-34729918 | Msa0404050:CDS | 45.0% |
| ! | CTACAAAGTACCAGTGGACT+TGG | - | chr3_2:34729905-34729924 | Msa0404050:CDS | 45.0% |
| TAGTCACACTTCCCATGTCT+TGG | + | chr3_2:34730646-34730665 | None:intergenic | 45.0% | |
| ! | TGCTCGTGGACTAAGAAAGT+TGG | - | chr3_2:34730850-34730869 | Msa0404050:intron | 45.0% |
| CTTCCTCGTGTTTATGGTAG+TGG | - | chr3_2:34730969-34730988 | Msa0404050:intron | 45.0% | |
| TTGGAGGGTGATTCGAATCA+GGG | + | chr3_2:34729773-34729792 | None:intergenic | 45.0% | |
| ! | GAGTGACTACAAAGTACCAG+TGG | - | chr3_2:34729899-34729918 | Msa0404050:CDS | 45.0% |
| ! | CTACAAAGTACCAGTGGACT+TGG | - | chr3_2:34729905-34729924 | Msa0404050:CDS | 45.0% |
| TAGTCACACTTCCCATGTCT+TGG | + | chr3_2:34730646-34730665 | None:intergenic | 45.0% | |
| ! | TGCTCGTGGACTAAGAAAGT+TGG | - | chr3_2:34730850-34730869 | Msa0404050:intron | 45.0% |
| CTTCCTCGTGTTTATGGTAG+TGG | - | chr3_2:34730969-34730988 | Msa0404050:intron | 45.0% | |
| CTTGGAGGGTGATTCGAATC+AGG | + | chr3_2:34729774-34729793 | None:intergenic | 50.0% | |
| ! | TTGCTGGTTACCAAGTCCAC+TGG | + | chr3_2:34729918-34729937 | None:intergenic | 50.0% |
| GAGACTCTGACTTTACTCGG+AGG | + | chr3_2:34730085-34730104 | None:intergenic | 50.0% | |
| GACTTTAAGCCACTGTGTGG+TGG | - | chr3_2:34730399-34730418 | Msa0404050:intron | 50.0% | |
| ! | GTTTTCGCTGCGTTATGACC+AGG | + | chr3_2:34730428-34730447 | None:intergenic | 50.0% |
| CTTGGAGGGTGATTCGAATC+AGG | + | chr3_2:34729774-34729793 | None:intergenic | 50.0% | |
| ! | TTGCTGGTTACCAAGTCCAC+TGG | + | chr3_2:34729918-34729937 | None:intergenic | 50.0% |
| GAGACTCTGACTTTACTCGG+AGG | + | chr3_2:34730085-34730104 | None:intergenic | 50.0% | |
| GACTTTAAGCCACTGTGTGG+TGG | - | chr3_2:34730399-34730418 | Msa0404050:intron | 50.0% | |
| ! | GTTTTCGCTGCGTTATGACC+AGG | + | chr3_2:34730428-34730447 | None:intergenic | 50.0% |
| ACCAGGACGCCACCACACAG+TGG | + | chr3_2:34730411-34730430 | None:intergenic | 65.0% | |
| ACCAGGACGCCACCACACAG+TGG | + | chr3_2:34730411-34730430 | None:intergenic | 65.0% | |
| ! | GCCACTGTGTGGTGGCGTCC+TGG | - | chr3_2:34730407-34730426 | Msa0404050:intron | 70.0% |
| ! | GCCACTGTGTGGTGGCGTCC+TGG | - | chr3_2:34730407-34730426 | Msa0404050:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 34729660 | 34731170 | 34729660 | ID=Msa0404050;Name=Msa0404050 |
| chr3_2 | mRNA | 34729660 | 34731170 | 34729660 | ID=Msa0404050-mRNA-1;Parent=Msa0404050;Name=Msa0404050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.5|0.5|0|0.5|2|182|122 |
| chr3_2 | exon | 34729660 | 34730205 | 34729660 | ID=Msa0404050-mRNA-1:exon:7090;Parent=Msa0404050-mRNA-1 |
| chr3_2 | exon | 34731166 | 34731170 | 34731166 | ID=Msa0404050-mRNA-1:exon:7089;Parent=Msa0404050-mRNA-1 |
| chr3_2 | CDS | 34731166 | 34731170 | 34731166 | ID=Msa0404050-mRNA-1:cds;Parent=Msa0404050-mRNA-1 |
| chr3_2 | CDS | 34729842 | 34730205 | 34729842 | ID=Msa0404050-mRNA-1:cds;Parent=Msa0404050-mRNA-1 |
| chr3_2 | three_prime_UTR | 34729660 | 34729841 | 34729660 | ID=Msa0404050-mRNA-1:three_prime_utr;Parent=Msa0404050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
