AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010500 MtrunA17_Chr1g0159481 99.535 215 1 0 1 215 1 215 1.23e-160 442
Msa0010500 MtrunA17_Chr8g0384311 85.990 207 28 1 7 213 3 208 2.77e-133 372
Msa0010500 MtrunA17_Chr3g0130271 83.092 207 33 2 8 213 3 208 4.74e-126 354
Msa0010500 MtrunA17_Chr7g0265001 67.327 202 65 1 14 214 13 214 9.48e-104 298
Msa0010500 MtrunA17_Chr1g0180291 66.500 200 67 0 14 213 11 210 3.10e-102 294
Msa0010500 MtrunA17_Chr1g0197331 61.215 214 79 2 3 214 1 212 1.56e-91 267
Msa0010500 MtrunA17_Chr7g0250531 57.647 170 69 3 13 181 4 171 1.34e-58 183
Msa0010500 MtrunA17_Chr8g0335471 49.754 203 97 4 13 214 4 202 1.12e-57 181
Msa0010500 MtrunA17_Chr2g0276931 49.020 204 97 5 13 214 5 203 2.72e-57 180
Msa0010500 MtrunA17_Chr4g0055651 55.357 168 72 3 13 179 4 169 4.55e-57 179
Msa0010500 MtrunA17_Chr1g0182321 44.545 220 109 7 3 214 1 215 9.84e-55 174
Msa0010500 MtrunA17_Chr1g0182301 44.091 220 110 7 3 214 1 215 3.25e-54 172
Msa0010500 MtrunA17_Chr1g0212521 45.714 210 101 7 13 214 11 215 3.09e-53 170
Msa0010500 MtrunA17_Chr4g0030911 45.673 208 103 7 13 214 11 214 1.53e-52 168
Msa0010500 MtrunA17_Chr7g0263071 49.438 178 82 5 13 184 11 186 6.43e-52 166
Msa0010500 MtrunA17_Chr2g0327911 43.137 204 113 3 13 214 11 213 2.10e-51 165
Msa0010500 MtrunA17_Chr6g0458081 49.405 168 82 3 14 180 3 168 9.73e-51 163
Msa0010500 MtrunA17_Chr2g0290891 49.375 160 78 3 14 172 3 160 9.78e-49 158
Msa0010500 MtrunA17_Chr6g0482721 49.708 171 83 3 15 184 10 178 1.77e-48 158
Msa0010500 MtrunA17_Chr8g0349681 42.157 204 111 4 16 214 383 584 7.42e-48 165
Msa0010500 MtrunA17_Chr8g0349681 44.134 179 91 4 1 172 153 329 2.68e-42 150
Msa0010500 MtrunA17_Chr8g0349681 44.099 161 87 3 16 175 12 170 1.18e-40 145
Msa0010500 MtrunA17_Chr2g0325091 44.976 209 106 6 13 214 7 213 1.27e-47 155
Msa0010500 MtrunA17_Chr8g0349711 47.468 158 80 3 16 172 5 160 1.12e-46 153
Msa0010500 MtrunA17_Chr2g0283131 40.092 217 106 6 13 214 9 216 1.36e-46 153
Msa0010500 MtrunA17_Chr4g0046261 42.932 191 95 4 13 191 9 197 1.74e-46 153
Msa0010500 MtrunA17_Chr2g0319951 48.214 168 84 3 13 179 9 174 3.66e-46 152
Msa0010500 MtrunA17_Chr8g0346421 46.429 168 87 3 13 179 22 187 5.93e-46 152
Msa0010500 MtrunA17_Chr2g0276941 40.000 210 115 5 13 213 11 218 1.27e-45 150
Msa0010500 MtrunA17_Chr4g0040781 42.932 191 95 4 13 191 9 197 1.63e-45 150
Msa0010500 MtrunA17_Chr7g0275991 42.051 195 110 3 13 206 16 208 2.63e-45 150
Msa0010500 MtrunA17_Chr3g0112681 42.077 183 100 4 13 191 8 188 2.76e-45 149
Msa0010500 MtrunA17_Chr2g0315551 45.833 168 88 3 13 179 9 174 4.67e-45 149
Msa0010500 MtrunA17_Chr8g0381841 38.679 212 116 5 14 213 14 223 5.43e-45 149
Msa0010500 MtrunA17_Chr7g0234201 42.202 218 93 7 16 214 12 215 1.15e-44 148
Msa0010500 MtrunA17_Chr4g0032201 40.761 184 103 4 13 192 8 189 1.24e-44 148
Msa0010500 MtrunA17_Chr3g0123821 37.264 212 120 5 13 213 12 221 2.15e-44 147
Msa0010500 MtrunA17_Chr8g0351861 41.204 216 109 6 15 214 14 227 1.24e-43 146
Msa0010500 MtrunA17_Chr1g0189361 41.026 195 103 4 15 208 12 195 1.60e-43 145
Msa0010500 MtrunA17_Chr8g0392931 47.059 170 87 3 13 181 10 177 2.00e-42 142
Msa0010500 MtrunA17_Chr7g0231131 42.262 168 94 3 13 179 11 176 5.47e-42 141
Msa0010500 MtrunA17_Chr1g0174281 37.037 216 119 7 13 214 11 223 7.49e-41 138
Msa0010500 MtrunA17_Chr7g0214241 42.353 170 95 3 16 184 14 181 1.44e-38 132
Msa0010500 MtrunA17_Chr5g0433561 37.056 197 115 6 19 214 12 200 3.49e-36 125
Msa0010500 MtrunA17_Chr1g0199331 40.237 169 96 5 19 185 33 198 2.83e-35 123
Msa0010500 MtrunA17_Chr3g0109721 35.533 197 118 6 19 214 12 200 4.67e-35 123
Msa0010500 MtrunA17_Chr8g0390561 38.272 162 97 3 19 179 11 170 6.72e-34 120
Msa0010500 MtrunA17_Chr4g0055081 38.994 159 94 3 18 175 10 166 5.37e-33 118
Msa0010500 MtrunA17_Chr8g0382221 37.736 159 96 3 18 175 10 166 2.97e-32 116
Msa0010500 MtrunA17_Chr5g0400131 38.365 159 95 3 18 175 10 166 3.84e-32 115
Msa0010500 MtrunA17_Chr3g0123971 37.278 169 103 3 18 185 10 176 4.21e-32 115
Msa0010500 MtrunA17_Chr4g0034871 36.842 171 100 5 17 180 8 177 6.05e-29 107
Msa0010500 MtrunA17_Chr8g0383261 39.444 180 94 7 1 172 1 173 7.80e-29 107
Msa0010500 MtrunA17_Chr2g0331691 34.653 202 106 6 17 211 10 192 7.00e-28 104
Msa0010500 MtrunA17_Chr4g0004661 33.663 202 108 6 17 211 64 246 7.95e-27 103
Msa0010500 MtrunA17_Chr1g0201121 37.423 163 94 5 17 172 8 169 1.54e-26 101
Msa0010500 MtrunA17_Chr6g0466301 38.650 163 92 6 17 172 8 169 2.11e-26 100
Msa0010500 MtrunA17_Chr6g0465491 38.650 163 92 6 17 172 8 169 2.11e-26 100
Msa0010500 MtrunA17_Chr3g0138121 36.813 182 106 7 7 185 2 177 1.57e-25 99.0
Msa0010500 MtrunA17_Chr3g0138101 36.813 182 106 7 7 185 2 177 1.79e-25 99.0
Msa0010500 MtrunA17_Chr3g0138111 36.813 182 106 7 7 185 2 177 2.03e-25 99.0
Msa0010500 MtrunA17_Chr2g0325101 31.250 176 106 5 17 180 6 178 1.79e-23 93.2
Msa0010500 MtrunA17_Chr3g0117931 29.064 203 126 6 8 198 2 198 5.02e-23 92.4
Msa0010500 MtrunA17_Chr6g0486041 30.726 179 109 5 17 183 6 181 5.94e-23 92.0
Msa0010500 MtrunA17_Chr4g0037021 29.609 179 111 5 17 183 6 181 2.74e-22 90.1
Msa0010500 MtrunA17_Chr8g0371501 31.250 176 106 5 17 180 6 178 3.19e-21 87.0
Msa0010500 MtrunA17_Chr5g0405791 30.682 176 107 5 17 180 6 178 7.95e-21 86.3
Msa0010500 MtrunA17_Chr4g0046211 32.258 124 80 3 17 139 6 126 1.97e-17 75.9
Msa0010500 MtrunA17_Chr6g0466431 36.000 100 53 3 17 115 8 97 2.13e-14 66.6
Msa0010500 MtrunA17_Chr6g0465611 36.000 100 53 3 17 115 8 97 2.13e-14 66.6
Msa0010500 MtrunA17_Chr6g0466161 36.641 131 76 5 48 172 22 151 3.93e-14 68.6
Msa0010500 MtrunA17_Chr6g0465471 36.641 131 76 5 48 172 22 151 4.31e-14 68.2
Msa0010500 MtrunA17_Chr5g0434561 31.034 174 97 9 14 176 16 177 1.75e-12 63.5
Msa0010500 MtrunA17_Chr8g0383221 30.675 163 83 6 19 153 23 183 3.62e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010500 AT1G43890.3 85.354 198 29 0 7 204 3 200 4.17e-126 355
Msa0010500 AT1G43890.1 85.354 198 29 0 7 204 3 200 4.17e-126 355
Msa0010500 AT1G43890.2 85.354 198 29 0 7 204 3 200 4.17e-126 355
Msa0010500 AT5G03530.2 66.827 208 69 0 7 214 3 210 1.93e-109 313
Msa0010500 AT5G03530.1 66.827 208 69 0 7 214 3 210 1.93e-109 313
Msa0010500 AT3G09910.3 63.462 208 70 2 7 214 3 204 2.66e-89 261
Msa0010500 AT3G09910.1 63.462 208 70 2 7 214 3 204 2.66e-89 261
Msa0010500 AT3G09910.2 63.462 208 70 2 7 214 3 204 2.66e-89 261
Msa0010500 AT3G09910.5 64.865 185 62 1 7 188 3 187 4.76e-81 240
Msa0010500 AT3G09910.4 64.865 185 62 1 7 188 3 187 4.76e-81 240
Msa0010500 AT1G02130.1 48.768 203 99 4 13 214 4 202 5.44e-57 179
Msa0010500 AT5G47200.1 48.276 203 99 5 13 214 4 201 2.67e-56 177
Msa0010500 AT4G17530.1 48.276 203 99 5 13 214 4 201 4.45e-56 177
Msa0010500 AT4G35860.1 48.925 186 88 4 14 194 3 186 5.64e-54 172
Msa0010500 AT3G53610.2 46.860 207 100 7 13 213 11 213 1.48e-53 171
Msa0010500 AT3G53610.3 46.860 207 100 7 13 213 11 213 1.48e-53 171
Msa0010500 AT3G53610.1 46.860 207 100 7 13 213 11 213 1.48e-53 171
Msa0010500 AT5G59840.1 46.377 207 101 7 13 213 11 213 3.10e-53 170
Msa0010500 AT3G09900.1 47.170 212 100 7 12 215 10 217 1.79e-52 168
Msa0010500 AT3G11730.1 45.320 203 108 3 13 214 4 204 2.06e-52 168
Msa0010500 AT5G03520.1 45.161 217 107 6 6 215 4 215 2.17e-52 168
Msa0010500 AT3G46060.2 45.894 207 102 7 13 213 11 213 5.82e-52 167
Msa0010500 AT3G46060.3 45.894 207 102 7 13 213 11 213 5.82e-52 167
Msa0010500 AT3G46060.1 45.894 207 102 7 13 213 11 213 5.82e-52 167
Msa0010500 AT4G17160.1 42.439 205 112 4 14 214 3 205 1.49e-50 163
Msa0010500 AT4G39990.1 42.105 209 109 5 15 213 15 221 5.29e-50 162
Msa0010500 AT4G17170.1 49.375 160 78 3 14 172 3 160 2.74e-49 160
Msa0010500 AT2G33870.1 41.706 211 112 5 13 214 9 217 1.37e-47 156
Msa0010500 AT5G60860.1 43.455 191 94 4 13 191 9 197 3.05e-46 152
Msa0010500 AT4G18430.1 41.429 210 113 4 13 214 9 216 3.95e-46 152
Msa0010500 AT1G18200.1 48.214 168 84 3 13 179 9 174 4.24e-46 152
Msa0010500 AT1G09630.1 40.000 210 116 4 13 214 8 215 4.45e-46 152
Msa0010500 AT1G73640.1 48.214 168 84 3 13 179 9 174 5.24e-46 152
Msa0010500 AT1G28550.1 47.024 168 86 3 13 179 9 174 5.68e-46 152
Msa0010500 AT1G16920.1 47.619 168 85 3 13 179 9 174 7.11e-46 151
Msa0010500 AT5G45750.1 47.024 168 86 3 13 179 9 174 8.45e-46 151
Msa0010500 AT3G07410.1 41.627 209 111 4 15 214 10 216 1.22e-45 151
Msa0010500 AT1G06400.1 47.619 168 85 3 13 179 9 174 1.92e-45 150
Msa0010500 AT3G15060.1 45.087 173 92 3 13 184 9 179 9.20e-45 149
Msa0010500 AT4G18800.1 41.546 207 114 4 13 214 9 213 1.11e-44 148
Msa0010500 AT2G43130.1 40.777 206 114 5 15 214 10 213 1.58e-44 148
Msa0010500 AT1G05810.1 45.029 171 91 3 15 184 10 178 1.93e-44 148
Msa0010500 AT5G47520.1 44.444 171 92 3 15 184 12 180 3.94e-44 147
Msa0010500 AT1G05810.2 45.029 171 91 3 15 184 56 224 5.43e-44 148
Msa0010500 AT5G65270.1 41.176 170 97 3 13 181 13 180 6.55e-44 147
Msa0010500 AT1G07410.1 40.217 184 104 4 13 192 8 189 1.25e-43 145
Msa0010500 AT3G46830.1 42.197 173 97 3 13 184 8 178 6.95e-43 144
Msa0010500 AT3G46830.2 42.197 173 97 3 13 184 8 178 6.95e-43 144
Msa0010500 AT3G12160.1 38.208 212 119 6 13 214 11 220 7.82e-43 144
Msa0010500 AT2G31680.1 45.783 166 87 3 15 179 10 173 9.22e-43 144
Msa0010500 AT1G01200.1 44.706 170 90 4 13 180 24 191 1.42e-42 144
Msa0010500 AT5G47960.1 36.620 213 122 6 13 214 11 221 3.53e-42 142
Msa0010500 AT5G59150.1 41.040 173 99 3 13 184 8 178 7.24e-42 141
Msa0010500 AT5G03520.2 42.373 177 91 5 45 215 34 205 1.23e-37 130
Msa0010500 AT4G39890.1 38.251 183 109 3 18 197 10 191 1.26e-37 130
Msa0010500 AT4G35860.2 50.407 123 59 2 58 180 2 122 1.79e-36 126
Msa0010500 AT3G54840.1 39.429 175 99 5 6 175 19 191 2.64e-34 121
Msa0010500 AT4G19640.1 36.041 197 117 6 19 214 12 200 2.69e-34 121
Msa0010500 AT5G45130.1 36.041 197 117 6 19 214 12 200 2.78e-34 121
Msa0010500 AT3G54840.3 40.506 158 90 4 20 175 2 157 9.97e-34 119
Msa0010500 AT5G10260.1 39.623 159 93 3 18 175 10 166 1.85e-33 119
Msa0010500 AT3G54840.2 40.764 157 89 4 19 173 35 189 4.88e-33 118
Msa0010500 AT5G45130.2 35.385 195 117 6 21 214 22 208 1.20e-32 117
Msa0010500 AT2G44610.1 38.994 159 94 3 18 175 10 166 1.49e-32 117
Msa0010500 AT2G22290.1 39.623 159 93 3 18 175 10 166 3.10e-32 116
Msa0010500 AT3G18820.1 39.024 164 92 5 17 173 8 170 3.63e-29 108
Msa0010500 AT5G64990.1 37.821 156 94 3 18 172 8 161 7.66e-29 107
Msa0010500 AT1G52280.1 35.149 202 105 6 17 211 8 190 9.59e-29 107
Msa0010500 AT4G09720.1 39.264 163 91 5 17 172 8 169 2.00e-28 106
Msa0010500 AT1G22740.1 38.037 163 93 5 17 172 8 169 3.56e-28 105
Msa0010500 AT3G16100.1 35.149 202 105 6 17 211 8 190 8.71e-28 104
Msa0010500 AT4G09720.4 38.690 168 90 6 17 172 8 174 9.82e-28 104
Msa0010500 AT1G49300.2 38.037 163 93 5 17 172 8 169 1.33e-27 104
Msa0010500 AT1G49300.1 38.037 163 93 5 17 172 8 169 1.33e-27 104
Msa0010500 AT5G39620.1 37.647 170 98 5 18 180 6 174 2.07e-27 103
Msa0010500 AT2G21880.1 37.805 164 92 6 17 172 9 170 7.83e-27 102
Msa0010500 AT4G09720.3 36.782 174 91 6 17 172 8 180 9.57e-27 102
Msa0010500 AT5G55080.1 39.024 164 92 6 18 179 14 171 2.82e-26 101
Msa0010500 AT5G64990.2 36.196 163 94 4 18 172 8 168 4.02e-26 100
Msa0010500 AT5G59150.2 38.211 123 74 2 57 179 2 122 2.36e-25 97.4
Msa0010500 AT4G19640.2 39.844 128 74 3 19 145 12 137 1.07e-24 95.1
Msa0010500 AT4G19640.3 39.098 133 78 3 19 150 12 142 1.61e-24 95.9
Msa0010500 AT2G44690.1 31.667 180 108 5 17 184 18 194 1.70e-24 96.3
Msa0010500 AT5G20010.1 35.789 190 105 8 7 185 2 185 3.64e-24 95.9
Msa0010500 AT5G55190.1 37.356 174 100 7 9 179 4 171 5.00e-24 95.5
Msa0010500 AT5G20020.1 36.932 176 102 7 7 179 2 171 7.08e-24 95.1
Msa0010500 AT4G35020.1 30.168 179 110 5 17 183 6 181 1.01e-22 91.7
Msa0010500 AT4G35020.2 30.168 179 110 5 17 183 6 181 1.01e-22 91.7
Msa0010500 AT4G35020.3 30.168 179 110 5 17 183 6 181 1.01e-22 91.7
Msa0010500 AT3G51300.1 31.034 174 105 5 19 180 8 178 1.30e-22 91.3
Msa0010500 AT3G48040.1 30.526 190 113 7 8 185 2 184 7.80e-22 89.4
Msa0010500 AT4G28950.1 29.379 177 112 5 17 183 6 179 1.00e-21 89.0
Msa0010500 AT2G17800.2 30.114 176 108 5 17 180 6 178 2.04e-21 88.2
Msa0010500 AT2G17800.1 30.114 176 108 5 17 180 6 178 2.04e-21 88.2
Msa0010500 AT4G09720.6 40.458 131 71 4 48 172 6 135 2.22e-21 87.4
Msa0010500 AT4G09720.5 40.458 131 71 4 48 172 6 135 2.22e-21 87.4
Msa0010500 AT4G09720.2 40.458 131 71 4 48 172 6 135 2.22e-21 87.4
Msa0010500 AT1G20090.1 29.545 176 109 5 17 180 5 177 2.46e-21 87.8
Msa0010500 AT1G75840.1 29.545 176 109 5 17 180 6 178 2.82e-21 87.8
Msa0010500 AT4G35950.1 29.545 176 109 5 17 180 6 178 1.09e-20 86.3
Msa0010500 AT5G62880.1 29.189 185 113 6 8 180 2 180 4.00e-20 85.1
Msa0010500 AT5G45970.1 28.488 172 108 5 17 176 6 174 6.67e-20 84.0
Msa0010500 AT3G48040.2 30.939 181 106 7 8 175 2 176 9.31e-20 83.2
Msa0010500 AT2G21880.4 38.636 132 72 5 48 172 16 145 1.46e-19 82.8
Msa0010500 AT2G21880.3 38.636 132 72 5 48 172 16 145 1.46e-19 82.8
Msa0010500 AT2G21880.2 32.927 164 92 7 17 172 9 162 1.49e-17 77.8
Msa0010500 AT5G62880.2 30.000 170 101 6 8 165 2 165 1.97e-17 77.4
Msa0010500 AT3G51290.2 29.605 152 93 4 40 180 631 779 2.31e-15 74.7
Msa0010500 AT4G35020.4 34.483 116 72 3 19 133 8 120 3.12e-15 70.5
Msa0010500 AT4G35020.5 34.483 116 72 3 19 133 8 120 3.12e-15 70.5
Msa0010500 AT5G46025.1 35.577 104 66 1 78 181 6 108 3.71e-15 69.3
Msa0010500 AT5G37680.1 29.545 176 97 9 14 176 16 177 1.22e-12 64.3
Msa0010500 AT3G49870.2 32.934 167 95 9 18 176 1 158 2.39e-12 63.2
Msa0010500 AT3G49870.1 32.749 171 98 9 14 176 16 177 3.97e-12 62.8
Msa0010500 AT5G67560.1 32.749 171 98 9 14 176 16 177 4.40e-12 62.8
Msa0010500 AT5G64813.1 28.221 163 87 6 19 153 24 184 7.61e-11 60.8
Msa0010500 AT5G64813.3 28.221 163 87 6 19 153 24 184 7.61e-11 60.8
Msa0010500 AT5G64813.2 28.221 163 87 6 19 153 24 184 7.61e-11 60.8
Msa0010500 AT3G22950.1 28.244 131 87 3 18 148 18 141 9.47e-11 59.3
Msa0010500 AT3G22950.2 28.244 131 87 3 18 148 18 141 9.47e-11 59.3

Find 61 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTATGATTGGTGATTC+TGG 0.217855 1_1:+15908526 Msa0010500:CDS
ACTGCAGAAGATCCTGAATT+TGG 0.226153 1_1:+15912523 Msa0010500:three_prime_UTR
TTACAAATCTATCTGATATA+TGG 0.238643 1_1:+15911514 Msa0010500:CDS
AGAAGTTAAAACTTGCTATA+TGG 0.282325 1_1:+15909998 Msa0010500:CDS
GAAAGGTTTCGAACACTTAC+TGG 0.285773 1_1:+15910140 Msa0010500:CDS
GTGGACTTTGCAAGGCAATA+TGG 0.296394 1_1:+15911760 Msa0010500:CDS
CTCCTGGCTGAGGGCTCATC+TGG 0.330734 1_1:+15912185 Msa0010500:CDS
AGGTGCACAAGGAATAATTA+TGG 0.331547 1_1:+15910175 Msa0010500:CDS
TGAAAGGGCTGTTACCAAAA+AGG 0.345224 1_1:+15911732 Msa0010500:CDS
AATGGATGTTTCTTCTTCTT+CGG 0.349573 1_1:+15908468 Msa0010500:exon
GAAGTTAAAACTTGCTATAT+GGG 0.357838 1_1:+15909999 Msa0010500:CDS
GAAGATCTTTCTCCCACTAT+TGG 0.364166 1_1:+15908595 Msa0010500:CDS
CGCGAAAGAAAGCCTCCTTT+TGG 0.376354 1_1:-15912616 None:intergenic
TTGTTCAAGCTTCTTATGAT+TGG 0.383844 1_1:+15908517 Msa0010500:CDS
GATTGCATCAAGATGCTTGT+TGG 0.386118 1_1:+15911570 Msa0010500:CDS
TACAAATCTATCTGATATAT+GGG 0.407172 1_1:+15911515 Msa0010500:CDS
CCACAGAAGAAACCAAATTC+AGG 0.409745 1_1:-15912535 None:intergenic
TTCTTCTCGTGCAGCTGGAC+AGG 0.417456 1_1:+15910118 Msa0010500:intron
CTTGTGTTGAATGAATTATA+TGG 0.423704 1_1:-15908382 None:intergenic
TAATGAAACAGAAAGCAAAA+TGG 0.428240 1_1:-15912584 None:intergenic
AATCGCGGTTTATTCTGAAA+TGG 0.435369 1_1:+15908450 Msa0010500:exon
GTTAAATATGTTACACTTGG+TGG 0.437372 1_1:+15909973 Msa0010500:CDS
TTTGGTTTCTTCTGTGGTTG+TGG 0.445334 1_1:+15912541 Msa0010500:three_prime_UTR
CCTGAATTTGGTTTCTTCTG+TGG 0.450279 1_1:+15912535 Msa0010500:three_prime_UTR
TACACCAAGCCTCCTGGCTG+AGG 0.454373 1_1:+15912175 Msa0010500:CDS
ATGATTGGTGATTCTGGTGT+TGG 0.454677 1_1:+15908532 Msa0010500:CDS
TCTGCAGTGCAGAGGGGAAT+GGG 0.455809 1_1:-15912508 None:intergenic
TGGACTTTGCAAGGCAATAT+GGG 0.468552 1_1:+15911761 Msa0010500:CDS
GAGCCCTCAGCCAGGAGGCT+TGG 0.469370 1_1:-15912179 None:intergenic
GGTGCACAAGGAATAATTAT+GGG 0.473429 1_1:+15910176 Msa0010500:CDS
CTTACTGGTTCATATTATAG+AGG 0.473869 1_1:+15910155 Msa0010500:CDS
TTGCACTGCATTCAGTATAG+AGG 0.489926 1_1:-15911786 None:intergenic
TTCTGCAGTGCAGAGGGGAA+TGG 0.490445 1_1:-15912509 None:intergenic
TTTGGATACACCAAGCCTCC+TGG 0.503438 1_1:+15912169 Msa0010500:CDS
ATTCACATCATACTGAAAAG+TGG 0.524648 1_1:-15912310 None:intergenic
TATGAAATCTGTCTCTACAT+AGG 0.529703 1_1:+15912445 Msa0010500:three_prime_UTR
CACCTAGCAGCTGTTGCGCA+TGG 0.530235 1_1:+15912255 Msa0010500:CDS
TCATTATTATGTGAACCAAA+AGG 0.531815 1_1:+15912601 Msa0010500:three_prime_UTR
AGGATCTTCTGCAGTGCAGA+GGG 0.539344 1_1:-15912515 None:intergenic
CACCAGATGAGCCCTCAGCC+AGG 0.548724 1_1:-15912187 None:intergenic
AGGAAGCGGTGGACTTTGCA+AGG 0.556741 1_1:+15911752 Msa0010500:CDS
AAAGTTAAATATGTTACACT+TGG 0.573517 1_1:+15909970 Msa0010500:CDS
CACCATGCGCAACAGCTGCT+AGG 0.581361 1_1:-15912257 None:intergenic
GGTGATGCATCAGACTCTTG+CGG 0.604993 1_1:-15912236 None:intergenic
CAGGATCTTCTGCAGTGCAG+AGG 0.614315 1_1:-15912516 None:intergenic
ACACCAAGCCTCCTGGCTGA+GGG 0.615958 1_1:+15912176 Msa0010500:CDS
TTTGTGAACAAACCAATAGT+GGG 0.616040 1_1:-15908607 None:intergenic
CTCGTGCAGCTGGACAGGAA+AGG 0.620766 1_1:+15910123 Msa0010500:intron
AGCAAACCACACTGTAGACA+AGG 0.624336 1_1:-15912720 None:intergenic
AAACTTGCTATATGGGACAC+GGG 0.627855 1_1:+15910006 Msa0010500:CDS
CACATCATACTGAAAAGTGG+AGG 0.630350 1_1:-15912307 None:intergenic
TTATTATGTGAACCAAAAGG+AGG 0.632285 1_1:+15912604 Msa0010500:three_prime_UTR
AAAACTTGCTATATGGGACA+CGG 0.637080 1_1:+15910005 Msa0010500:CDS
ACATCATACTGAAAAGTGGA+GGG 0.649542 1_1:-15912306 None:intergenic
TCATATTATAGAGGTGCACA+AGG 0.659834 1_1:+15910164 Msa0010500:CDS
TGTTGGAAACAAAGTTGACA+AGG 0.666842 1_1:+15911587 Msa0010500:CDS
CAGATGAGCCCTCAGCCAGG+AGG 0.684281 1_1:-15912184 None:intergenic
TCGAAGCTTAAACTCAATCG+CGG 0.689908 1_1:+15908435 Msa0010500:five_prime_UTR
AAGATGCCTTGTCTACAGTG+TGG 0.720385 1_1:+15912714 Msa0010500:three_prime_UTR
GAACAAGTAATCGAATTCAG+CGG 0.723999 1_1:-15908500 None:intergenic
GGATCTTCTGCAGTGCAGAG+GGG 0.729498 1_1:-15912514 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACGATAATAAAATAAAAA+AGG + chr1_1:15912023-15912042 Msa0010500:intron 10.0%
!! TAAACAAATTTATATTGCAT+TGG + chr1_1:15909780-15909799 Msa0010500:intron 15.0%
!! AAACAAATTTATATTGCATT+GGG + chr1_1:15909781-15909800 Msa0010500:intron 15.0%
!!! CATATCATTATTATTTTAGA+AGG - chr1_1:15910503-15910522 None:intergenic 15.0%
!!! AGTATTTCTTTTTATAAGAT+AGG + chr1_1:15910933-15910952 Msa0010500:intron 15.0%
!!! GTATTTCTTTTTATAAGATA+GGG + chr1_1:15910934-15910953 Msa0010500:intron 15.0%
!!! TTATTATTTTCATGTTTTTG+AGG - chr1_1:15911883-15911902 None:intergenic 15.0%
!!! TTTCTTTTGTTCATGTATTT+TGG + chr1_1:15908661-15908680 Msa0010500:intron 20.0%
!!! GATTTTTGTCAATTTATGTT+TGG + chr1_1:15908873-15908892 Msa0010500:intron 20.0%
!! AATAGTAAACAAGCTAAAAA+AGG - chr1_1:15909604-15909623 None:intergenic 20.0%
!! TACGTCTATATTAACATTAT+AGG - chr1_1:15909762-15909781 None:intergenic 20.0%
!! AACAAATTTATATTGCATTG+GGG + chr1_1:15909782-15909801 Msa0010500:intron 20.0%
!! AAAGTTAAATATGTTACACT+TGG + chr1_1:15909970-15909989 Msa0010500:CDS 20.0%
!!! TTGAAATTCTGTTATTTTCT+TGG + chr1_1:15910064-15910083 Msa0010500:intron 20.0%
!!! TGAAATTCTGTTATTTTCTT+GGG + chr1_1:15910065-15910084 Msa0010500:intron 20.0%
!! AAAATTGTACATCATATTCA+TGG - chr1_1:15910259-15910278 None:intergenic 20.0%
!!! TAAAAGCATTCAAACAAATT+AGG - chr1_1:15910284-15910303 None:intergenic 20.0%
!!! AACTATGAAAGTATAATAAC+AGG - chr1_1:15910408-15910427 None:intergenic 20.0%
!!! AGTGTATTACTTTTTTCAAA+AGG + chr1_1:15910582-15910601 Msa0010500:intron 20.0%
!! TCAATAACATTGGTATTATA+GGG - chr1_1:15910746-15910765 None:intergenic 20.0%
!! ATCAATAACATTGGTATTAT+AGG - chr1_1:15910747-15910766 None:intergenic 20.0%
!! TATAATACCAATGTTATTGA+TGG + chr1_1:15910746-15910765 Msa0010500:intron 20.0%
!! CATATATGGATATAAAGATT+GGG + chr1_1:15910974-15910993 Msa0010500:intron 20.0%
!!! TTATTGTATCTTTTGCTTTT+TGG + chr1_1:15911269-15911288 Msa0010500:intron 20.0%
!! TTACAAATCTATCTGATATA+TGG + chr1_1:15911514-15911533 Msa0010500:CDS 20.0%
!! TACAAATCTATCTGATATAT+GGG + chr1_1:15911515-15911534 Msa0010500:CDS 20.0%
!!! GACTAACGAAATTAATTTTT+TGG - chr1_1:15912366-15912385 None:intergenic 20.0%
! ATATGGAAAGTTGAAAAAGA+AGG - chr1_1:15908368-15908387 None:intergenic 25.0%
! CTTGTGTTGAATGAATTATA+TGG - chr1_1:15908385-15908404 None:intergenic 25.0%
! CATAATGAAAGTGAAAACAA+GGG - chr1_1:15908634-15908653 None:intergenic 25.0%
! ACATAATGAAAGTGAAAACA+AGG - chr1_1:15908635-15908654 None:intergenic 25.0%
! AGAGTCAAAATCAAATTTAG+GGG - chr1_1:15909055-15909074 None:intergenic 25.0%
! CAGAGTCAAAATCAAATTTA+GGG - chr1_1:15909056-15909075 None:intergenic 25.0%
! TCAGAGTCAAAATCAAATTT+AGG - chr1_1:15909057-15909076 None:intergenic 25.0%
!! TTATTAGCTTCTTGAAATCA+CGG - chr1_1:15909272-15909291 None:intergenic 25.0%
! TGATTTCAAGAAGCTAATAA+AGG + chr1_1:15909272-15909291 Msa0010500:intron 25.0%
!!! AGACTTATTGTACTTTTTCA+CGG + chr1_1:15909374-15909393 Msa0010500:intron 25.0%
! TGATGTGAAATTCTATCAAA+TGG + chr1_1:15909532-15909551 Msa0010500:intron 25.0%
! TTTAAGAATTGAGTGTAAGA+TGG - chr1_1:15909739-15909758 None:intergenic 25.0%
! TACTTTAACCTATAATTGAG+TGG - chr1_1:15909893-15909912 None:intergenic 25.0%
!!! AGAAGTTAAAACTTGCTATA+TGG + chr1_1:15909998-15910017 Msa0010500:CDS 25.0%
!!! GAAGTTAAAACTTGCTATAT+GGG + chr1_1:15909999-15910018 Msa0010500:CDS 25.0%
! TTTACCATAAAAACACACAA+GGG - chr1_1:15910367-15910386 None:intergenic 25.0%
!! TTTTACCATAAAAACACACA+AGG - chr1_1:15910368-15910387 None:intergenic 25.0%
!!! GAAATAAAATCGATTAGCTT+AGG - chr1_1:15910442-15910461 None:intergenic 25.0%
!!! TCGATTTTATTTCGAAATTC+AGG + chr1_1:15910449-15910468 Msa0010500:intron 25.0%
! TGTTTCATCCAAAATATTGA+CGG - chr1_1:15910615-15910634 None:intergenic 25.0%
!!! TCAATATTTTGGATGAAACA+TGG + chr1_1:15910615-15910634 Msa0010500:intron 25.0%
!! TGTTACTAAGTTTCTCATTT+TGG + chr1_1:15910686-15910705 Msa0010500:intron 25.0%
!! TTTGGCATTTGATAATCATT+TGG + chr1_1:15910704-15910723 Msa0010500:intron 25.0%
! TATACAGTGTTGTCAAATAT+CGG - chr1_1:15910889-15910908 None:intergenic 25.0%
! TACTAAAGTCATTGCATATA+TGG + chr1_1:15910960-15910979 Msa0010500:intron 25.0%
! GCATATATGGATATAAAGAT+TGG + chr1_1:15910973-15910992 Msa0010500:intron 25.0%
! TGACTAATAACTAATTCTTC+AGG + chr1_1:15911127-15911146 Msa0010500:intron 25.0%
! GACTAATAACTAATTCTTCA+GGG + chr1_1:15911128-15911147 Msa0010500:intron 25.0%
! ATTACATTTAGAAGCAAAAC+AGG - chr1_1:15911350-15911369 None:intergenic 25.0%
! AAACTGACTGATAGATAAAT+GGG - chr1_1:15911427-15911446 None:intergenic 25.0%
! TAAACTGACTGATAGATAAA+TGG - chr1_1:15911428-15911447 None:intergenic 25.0%
! TATAAACTTATCAGTGAATC+TGG + chr1_1:15911451-15911470 Msa0010500:intron 25.0%
! ATAAACTTATCAGTGAATCT+GGG + chr1_1:15911452-15911471 Msa0010500:intron 25.0%
! TGCAAATGCAAATTCATAAA+TGG - chr1_1:15911617-15911636 None:intergenic 25.0%
! TCAAAACTTAACACAAAGTT+TGG - chr1_1:15911653-15911672 None:intergenic 25.0%
! ACTTTCCTAAAATATGAGAT+AGG - chr1_1:15911713-15911732 None:intergenic 25.0%
!!! TCATATTTTAGGAAAGTGAA+AGG + chr1_1:15911716-15911735 Msa0010500:intron 25.0%
!!! CATATTTTAGGAAAGTGAAA+GGG + chr1_1:15911717-15911736 Msa0010500:intron 25.0%
! TTCACAAGAAAAAATTGTCA+AGG - chr1_1:15911953-15911972 None:intergenic 25.0%
! TGATAAGTTTAACTACTTGA+AGG - chr1_1:15911996-15912015 None:intergenic 25.0%
!! AAATCAGTATTTTCAGAAAG+TGG + chr1_1:15912103-15912122 Msa0010500:intron 25.0%
!! TGGAAGTAATGTTTCAATTT+TGG + chr1_1:15912123-15912142 Msa0010500:intron 25.0%
!! GGAAGTAATGTTTCAATTTT+GGG + chr1_1:15912124-15912143 Msa0010500:intron 25.0%
!!! TGGTGATTATGATGTTTTTA+AGG + chr1_1:15912275-15912294 Msa0010500:exon 25.0%
! CATCAATGCATTAAAAAAGT+AGG - chr1_1:15912418-15912437 None:intergenic 25.0%
! TAATGAAACAGAAAGCAAAA+TGG - chr1_1:15912587-15912606 None:intergenic 25.0%
! TCATTATTATGTGAACCAAA+AGG + chr1_1:15912601-15912620 Msa0010500:three_prime_UTR 25.0%
AATGGATGTTTCTTCTTCTT+CGG + chr1_1:15908468-15908487 Msa0010500:exon 30.0%
TTGTTCAAGCTTCTTATGAT+TGG + chr1_1:15908517-15908536 Msa0010500:CDS 30.0%
TTTGTGAACAAACCAATAGT+GGG - chr1_1:15908610-15908629 None:intergenic 30.0%
! TTTTGTGAACAAACCAATAG+TGG - chr1_1:15908611-15908630 None:intergenic 30.0%
!!! TCTGTGTTTTTTCAATGTAG+TGG + chr1_1:15908692-15908711 Msa0010500:intron 30.0%
!! CGTACTATTAACATTGATTC+TGG + chr1_1:15908747-15908766 Msa0010500:intron 30.0%
AGAGTGACATAAAGTGATTT+AGG + chr1_1:15908826-15908845 Msa0010500:intron 30.0%
ATTCAAACATGCATTCAAAG+TGG - chr1_1:15908939-15908958 None:intergenic 30.0%
CCATACCAAAATCAAACTTA+CGG - chr1_1:15908969-15908988 None:intergenic 30.0%
!! AAGTTTGATTTTGGTATGGT+CGG + chr1_1:15908970-15908989 Msa0010500:intron 30.0%
CCTCAAATGTGATTAATGTT+CGG - chr1_1:15909115-15909134 None:intergenic 30.0%
! AGTCAAATGTGATTTGACTT+CGG - chr1_1:15909145-15909164 None:intergenic 30.0%
ATCACATTTGACTAACCAAA+AGG + chr1_1:15909152-15909171 Msa0010500:intron 30.0%
! ACTAACCAAAAGGTGATTTT+TGG + chr1_1:15909162-15909181 Msa0010500:intron 30.0%
CAAGATATTGCATGAATGTA+GGG + chr1_1:15909491-15909510 Msa0010500:intron 30.0%
AAGATATTGCATGAATGTAG+GGG + chr1_1:15909492-15909511 Msa0010500:intron 30.0%
ATTCTATCAAATGGCATTAG+TGG + chr1_1:15909541-15909560 Msa0010500:intron 30.0%
AATTTAAGGAATCAGAATCG+TGG + chr1_1:15909701-15909720 Msa0010500:intron 30.0%
AATTTATATTGCATTGGGGA+AGG + chr1_1:15909786-15909805 Msa0010500:intron 30.0%
CATATGGCTTCTTAAATGAA+AGG - chr1_1:15909823-15909842 None:intergenic 30.0%
AAGAAGCCATATGAATGTTA+CGG + chr1_1:15909830-15909849 Msa0010500:intron 30.0%
TAACCTATAATTGAGTGGTA+GGG - chr1_1:15909888-15909907 None:intergenic 30.0%
TTAACCTATAATTGAGTGGT+AGG - chr1_1:15909889-15909908 None:intergenic 30.0%
GTTAAATATGTTACACTTGG+TGG + chr1_1:15909973-15909992 Msa0010500:CDS 30.0%
!!! CATGCTGATTCAGTTTATTT+TGG + chr1_1:15910037-15910056 Msa0010500:intron 30.0%
!! CTTACTGGTTCATATTATAG+AGG + chr1_1:15910155-15910174 Msa0010500:CDS 30.0%
!! TTATCCCTTGTGTGTTTTTA+TGG + chr1_1:15910360-15910379 Msa0010500:intron 30.0%
TTTAGAAGGAAATGTACAAG+AGG - chr1_1:15910489-15910508 None:intergenic 30.0%
!! TGATATGTTCATTTTCAAGC+TGG + chr1_1:15910516-15910535 Msa0010500:intron 30.0%
!!! ATTCTTTTTCGAGATTGAAG+TGG + chr1_1:15910548-15910567 Msa0010500:intron 30.0%
! GAAATATGCCGTCAATATTT+TGG + chr1_1:15910604-15910623 Msa0010500:intron 30.0%
CAAATCTTCTGTATTTGCAT+AGG - chr1_1:15910668-15910687 None:intergenic 30.0%
AATACCAATGTTATTGATGG+CGG + chr1_1:15910749-15910768 Msa0010500:intron 30.0%
AATGACAAATTTGTGAAGGA+TGG - chr1_1:15910820-15910839 None:intergenic 30.0%
! AAATTTGTCATTGCGGTTTT+CGG + chr1_1:15910828-15910847 Msa0010500:intron 30.0%
GTACTTAAAACCTCAAATCT+AGG + chr1_1:15911017-15911036 Msa0010500:intron 30.0%
! CAAAGTATTTGATCATGACA+TGG - chr1_1:15911054-15911073 None:intergenic 30.0%
! ACTTTGAAAGCTTAAACTGT+CGG + chr1_1:15911068-15911087 Msa0010500:intron 30.0%
CATATTGTACATACATCTTG+AGG - chr1_1:15911183-15911202 None:intergenic 30.0%
AAAGCTGAATAGTGAATTCA+GGG + chr1_1:15911228-15911247 Msa0010500:intron 30.0%
! GTTTGCCTATCTCATATTTT+AGG + chr1_1:15911705-15911724 Msa0010500:intron 30.0%
CAAGAAAAAATTGTCAAGGA+AGG - chr1_1:15911949-15911968 None:intergenic 30.0%
CAAAATCTGGAAACAACAAA+AGG - chr1_1:15912153-15912172 None:intergenic 30.0%
!!! CTTTTGTTGTTTCCAGATTT+TGG + chr1_1:15912151-15912170 Msa0010500:intron 30.0%
ATTCACATCATACTGAAAAG+TGG - chr1_1:15912313-15912332 None:intergenic 30.0%
TATGAAATCTGTCTCTACAT+AGG + chr1_1:15912445-15912464 Msa0010500:three_prime_UTR 30.0%
TTATTATGTGAACCAAAAGG+AGG + chr1_1:15912604-15912623 Msa0010500:three_prime_UTR 30.0%
! AATCGCGGTTTATTCTGAAA+TGG + chr1_1:15908450-15908469 Msa0010500:exon 35.0%
GAACAAGTAATCGAATTCAG+CGG - chr1_1:15908503-15908522 None:intergenic 35.0%
! CTTCTTATGATTGGTGATTC+TGG + chr1_1:15908526-15908545 Msa0010500:CDS 35.0%
!! GCTCTAGAATTATTCGTTTG+AGG + chr1_1:15908716-15908735 Msa0010500:intron 35.0%
!! TAACATTGATTCTGGTTCCA+CGG + chr1_1:15908755-15908774 Msa0010500:intron 35.0%
!! TGAAGCCGTAAGTTTGATTT+TGG + chr1_1:15908961-15908980 Msa0010500:intron 35.0%
!! CCGTAAGTTTGATTTTGGTA+TGG + chr1_1:15908966-15908985 Msa0010500:intron 35.0%
CCGAACATTAATCACATTTG+AGG + chr1_1:15909112-15909131 Msa0010500:intron 35.0%
!! AACCAAAAGGTGATTTTTGG+AGG + chr1_1:15909165-15909184 Msa0010500:intron 35.0%
CCATGTTCTTCTTGAAATCA+TGG - chr1_1:15909325-15909344 None:intergenic 35.0%
CCATGATTTCAAGAAGAACA+TGG + chr1_1:15909322-15909341 Msa0010500:intron 35.0%
AATAAGTCTTCGCATCTGTT+TGG - chr1_1:15909363-15909382 None:intergenic 35.0%
!! TAAGAGGTTTGGTTTGGTTT+GGG + chr1_1:15909432-15909451 Msa0010500:intron 35.0%
GCAAGATATTGCATGAATGT+AGG + chr1_1:15909490-15909509 Msa0010500:intron 35.0%
AGATATTGCATGAATGTAGG+GGG + chr1_1:15909493-15909512 Msa0010500:intron 35.0%
CACAAACCGTAACATTCATA+TGG - chr1_1:15909839-15909858 None:intergenic 35.0%
GACTCTTATGAACATAATGC+AGG + chr1_1:15909937-15909956 Msa0010500:intron 35.0%
!! AAAACTTGCTATATGGGACA+CGG + chr1_1:15910005-15910024 Msa0010500:CDS 35.0%
! TCATATTATAGAGGTGCACA+AGG + chr1_1:15910164-15910183 Msa0010500:CDS 35.0%
AGGTGCACAAGGAATAATTA+TGG + chr1_1:15910175-15910194 Msa0010500:CDS 35.0%
GGTGCACAAGGAATAATTAT+GGG + chr1_1:15910176-15910195 Msa0010500:CDS 35.0%
CTACGAAATGGAGAATATCA+AGG - chr1_1:15910215-15910234 None:intergenic 35.0%
ATATTCATGGTATAGCAAGC+AGG - chr1_1:15910246-15910265 None:intergenic 35.0%
GAACTGTAAATCATGCAACA+TGG + chr1_1:15910311-15910330 Msa0010500:intron 35.0%
ATCTTCTGTATTTGCATAGG+AGG - chr1_1:15910665-15910684 None:intergenic 35.0%
CCTTCACAAATTTGTCATTG+CGG + chr1_1:15910821-15910840 Msa0010500:intron 35.0%
CTTAAAACCTCAAATCTAGG+AGG + chr1_1:15911020-15911039 Msa0010500:intron 35.0%
! CTTTGAAAGCTTAAACTGTC+GGG + chr1_1:15911069-15911088 Msa0010500:intron 35.0%
TAACTAATTCTTCAGGGTCA+AGG + chr1_1:15911134-15911153 Msa0010500:intron 35.0%
GAAAGCTGAATAGTGAATTC+AGG + chr1_1:15911227-15911246 Msa0010500:intron 35.0%
AAGCTGAATAGTGAATTCAG+GGG + chr1_1:15911229-15911248 Msa0010500:intron 35.0%
TGTTGGAAACAAAGTTGACA+AGG + chr1_1:15911587-15911606 Msa0010500:CDS 35.0%
! AAATGTTGAGCAGTGTTTTG+AGG + chr1_1:15911819-15911838 Msa0010500:CDS 35.0%
!! TTTTGAGGAGCTTGTAATGA+AGG + chr1_1:15911834-15911853 Msa0010500:CDS 35.0%
!! TTCATGTTTTTGAGGACATG+AGG - chr1_1:15911875-15911894 None:intergenic 35.0%
ACATCATACTGAAAAGTGGA+GGG - chr1_1:15912309-15912328 None:intergenic 35.0%
TCGAAGCTTAAACTCAATCG+CGG + chr1_1:15908435-15908454 Msa0010500:five_prime_UTR 40.0%
! ATGATTGGTGATTCTGGTGT+TGG + chr1_1:15908532-15908551 Msa0010500:CDS 40.0%
GAAGATCTTTCTCCCACTAT+TGG + chr1_1:15908595-15908614 Msa0010500:CDS 40.0%
!! AACATTGATTCTGGTTCCAC+GGG + chr1_1:15908756-15908775 Msa0010500:intron 40.0%
! AAATTCAATTTTCGTCCCCG+TGG - chr1_1:15908775-15908794 None:intergenic 40.0%
! GACCTCCAAAAATCACCTTT+TGG - chr1_1:15909170-15909189 None:intergenic 40.0%
!! GATTTTTGGAGGTCTAGACT+TGG + chr1_1:15909176-15909195 Msa0010500:intron 40.0%
TCTAGACTTGGAACCAAATG+TGG + chr1_1:15909188-15909207 Msa0010500:intron 40.0%
CTAGACTTGGAACCAAATGT+GGG + chr1_1:15909189-15909208 Msa0010500:intron 40.0%
AGGAAGCTTCTGTAGTAATG+CGG + chr1_1:15909292-15909311 Msa0010500:intron 40.0%
! GTTCACTAAGAGGTTTGGTT+TGG + chr1_1:15909426-15909445 Msa0010500:intron 40.0%
!! CTAAGAGGTTTGGTTTGGTT+TGG + chr1_1:15909431-15909450 Msa0010500:intron 40.0%
!! AAGAGGTTTGGTTTGGTTTG+GGG + chr1_1:15909433-15909452 Msa0010500:intron 40.0%
AAAGGACATGTGAGACAACA+AGG - chr1_1:15909586-15909605 None:intergenic 40.0%
AAAGAGCTTCTCTCTCATAG+TGG + chr1_1:15909667-15909686 Msa0010500:intron 40.0%
AAGAGCTTCTCTCTCATAGT+GGG + chr1_1:15909668-15909687 Msa0010500:intron 40.0%
!! TGGGTGTTGGGAGAAATTTA+AGG + chr1_1:15909687-15909706 Msa0010500:intron 40.0%
TGAATGTTACGGTTTGTGTG+TGG + chr1_1:15909841-15909860 Msa0010500:intron 40.0%
GGGATGATAAAACAGCATCA+TGG - chr1_1:15909868-15909887 None:intergenic 40.0%
CATCCCTACCACTCAATTAT+AGG + chr1_1:15909882-15909901 Msa0010500:intron 40.0%
!! AAACTTGCTATATGGGACAC+GGG + chr1_1:15910006-15910025 Msa0010500:CDS 40.0%
GAAAGGTTTCGAACACTTAC+TGG + chr1_1:15910140-15910159 Msa0010500:CDS 40.0%
!! CGATTAGCTTAGGCTATACA+TGG - chr1_1:15910432-15910451 None:intergenic 40.0%
CTTTCCGCCATCAATAACAT+TGG - chr1_1:15910756-15910775 None:intergenic 40.0%
GACAAATTTGTGAAGGATGG+CGG - chr1_1:15910817-15910836 None:intergenic 40.0%
CCGCAATGACAAATTTGTGA+AGG - chr1_1:15910824-15910843 None:intergenic 40.0%
ATCATAGCCTCCTAGATTTG+AGG - chr1_1:15911030-15911049 None:intergenic 40.0%
AATAGTGAATTCAGGGGTCA+AGG + chr1_1:15911235-15911254 Msa0010500:intron 40.0%
GATTGCATCAAGATGCTTGT+TGG + chr1_1:15911570-15911589 Msa0010500:CDS 40.0%
TGAAAGGGCTGTTACCAAAA+AGG + chr1_1:15911732-15911751 Msa0010500:CDS 40.0%
TGGACTTTGCAAGGCAATAT+GGG + chr1_1:15911761-15911780 Msa0010500:CDS 40.0%
TTGCACTGCATTCAGTATAG+AGG - chr1_1:15911789-15911808 None:intergenic 40.0%
!! AACTCAAGCTTGCTGAAAGT+TGG + chr1_1:15911906-15911925 Msa0010500:intron 40.0%
GCAACTAACTTGAAGCAAGT+AGG - chr1_1:15912074-15912093 None:intergenic 40.0%
CACATCATACTGAAAAGTGG+AGG - chr1_1:15912310-15912329 None:intergenic 40.0%
ACTGCAGAAGATCCTGAATT+TGG + chr1_1:15912523-15912542 Msa0010500:three_prime_UTR 40.0%
CCACAGAAGAAACCAAATTC+AGG - chr1_1:15912538-15912557 None:intergenic 40.0%
! CCTGAATTTGGTTTCTTCTG+TGG + chr1_1:15912535-15912554 Msa0010500:three_prime_UTR 40.0%
! TTTGGTTTCTTCTGTGGTTG+TGG + chr1_1:15912541-15912560 Msa0010500:three_prime_UTR 40.0%
!! ACATTGATTCTGGTTCCACG+GGG + chr1_1:15908757-15908776 Msa0010500:intron 45.0%
!! GATTTTGGTATGGTCGGACT+CGG + chr1_1:15908976-15908995 Msa0010500:intron 45.0%
CGTCTGTTTGGATCTGTGTT+TGG + chr1_1:15909217-15909236 Msa0010500:intron 45.0%
GTTCACCTAACGTGAGTTTG+CGG + chr1_1:15909241-15909260 Msa0010500:intron 45.0%
TTGTTCCGCAAACTCACGTT+AGG - chr1_1:15909249-15909268 None:intergenic 45.0%
GCATCTGTTTGGATATGCGT+TGG - chr1_1:15909352-15909371 None:intergenic 45.0%
CTCGAAAGTTCCCATCTCAA+GGG - chr1_1:15909405-15909424 None:intergenic 45.0%
CTTGAGATGGGAACTTTCGA+GGG + chr1_1:15909404-15909423 Msa0010500:intron 45.0%
ACTTTCGAGGGTTCACTAAG+AGG + chr1_1:15909416-15909435 Msa0010500:intron 45.0%
!! TTCTCTCTCATAGTGGGTGT+TGG + chr1_1:15909674-15909693 Msa0010500:intron 45.0%
!! TCTCTCTCATAGTGGGTGTT+GGG + chr1_1:15909675-15909694 Msa0010500:intron 45.0%
! GTATTTTCTTCTCGTGCAGC+TGG + chr1_1:15910113-15910132 Msa0010500:intron 45.0%
CAGGAAAGGTAGCTACGAAA+TGG - chr1_1:15910227-15910246 None:intergenic 45.0%
CATGGTATAGCAAGCAGGAA+AGG - chr1_1:15910241-15910260 None:intergenic 45.0%
CAAAAATCCGACACATCCGA+CGG + chr1_1:15910777-15910796 Msa0010500:intron 45.0%
TTGTCAAATATCGGCCATGG+CGG - chr1_1:15910880-15910899 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr1_1:15910883-15910902 None:intergenic 45.0%
AAGCTTAAACTGTCGGGTGA+AGG + chr1_1:15911075-15911094 Msa0010500:intron 45.0%
GGCTGTTACCAAAAAGGAAG+CGG + chr1_1:15911738-15911757 Msa0010500:CDS 45.0%
TGTTACCAAAAAGGAAGCGG+TGG + chr1_1:15911741-15911760 Msa0010500:CDS 45.0%
! AAAGTCCACCGCTTCCTTTT+TGG - chr1_1:15911749-15911768 None:intergenic 45.0%
GTGGACTTTGCAAGGCAATA+TGG + chr1_1:15911760-15911779 Msa0010500:CDS 45.0%
!! GTTTTTGAGGACATGAGGAG+AGG - chr1_1:15911870-15911889 None:intergenic 45.0%
AAGCAAGTAGGTGCTTAGGA+GGG - chr1_1:15912062-15912081 None:intergenic 45.0%
CTTGAAGCAAGTAGGTGCTT+AGG - chr1_1:15912066-15912085 None:intergenic 45.0%
!! GGCTTGGTGTATCCAAAATC+TGG - chr1_1:15912166-15912185 None:intergenic 45.0%
!!! ATAATATTTTAAATAGATTA+TGG - chr1_1:15911319-15911338 None:intergenic 5.0%
TCACGGAAAGACCCTTGAGA+TGG + chr1_1:15909391-15909410 Msa0010500:intron 50.0%
CACGGAAAGACCCTTGAGAT+GGG + chr1_1:15909392-15909411 Msa0010500:intron 50.0%
CCTCGAAAGTTCCCATCTCA+AGG - chr1_1:15909406-15909425 None:intergenic 50.0%
CCTTGAGATGGGAACTTTCG+AGG + chr1_1:15909403-15909422 Msa0010500:intron 50.0%
CGAGGGTTCACTAAGAGGTT+TGG + chr1_1:15909421-15909440 Msa0010500:intron 50.0%
GAATGTAGGGGGAAAGTGAC+AGG + chr1_1:15909504-15909523 Msa0010500:intron 50.0%
! CGTCGGATGTGTCGGATTTT+TGG - chr1_1:15910779-15910798 None:intergenic 50.0%
! TCGGGTGAAGGCACAAAAGA+TGG + chr1_1:15911087-15911106 Msa0010500:intron 50.0%
AGCAAGTAGGTGCTTAGGAG+GGG - chr1_1:15912061-15912080 None:intergenic 50.0%
GAAGCAAGTAGGTGCTTAGG+AGG - chr1_1:15912063-15912082 None:intergenic 50.0%
TTTGGATACACCAAGCCTCC+TGG + chr1_1:15912169-15912188 Msa0010500:CDS 50.0%
GGTGATGCATCAGACTCTTG+CGG - chr1_1:15912239-15912258 None:intergenic 50.0%
AGGATCTTCTGCAGTGCAGA+GGG - chr1_1:15912518-15912537 None:intergenic 50.0%
! CGCGAAAGAAAGCCTCCTTT+TGG - chr1_1:15912619-15912638 None:intergenic 50.0%
GGTCGGACTCGGAACTGATT+TGG + chr1_1:15908987-15909006 Msa0010500:intron 55.0%
ACAGACGCTTCGCCCACATT+TGG - chr1_1:15909204-15909223 None:intergenic 55.0%
! ATGTGGGCGAAGCGTCTGTT+TGG + chr1_1:15909205-15909224 Msa0010500:intron 55.0%
TTCTTCTCGTGCAGCTGGAC+AGG + chr1_1:15910118-15910137 Msa0010500:intron 55.0%
AATCCGACACATCCGACGGA+TGG + chr1_1:15910781-15910800 Msa0010500:intron 55.0%
!! CATGGCGGCATAGCGGATAT+CGG - chr1_1:15910865-15910884 None:intergenic 55.0%
! AGGAAGCGGTGGACTTTGCA+AGG + chr1_1:15911752-15911771 Msa0010500:CDS 55.0%
AAGTAGGTGCTTAGGAGGGG+GGG - chr1_1:15912058-15912077 None:intergenic 55.0%
CAAGTAGGTGCTTAGGAGGG+GGG - chr1_1:15912059-15912078 None:intergenic 55.0%
GCAAGTAGGTGCTTAGGAGG+GGG - chr1_1:15912060-15912079 None:intergenic 55.0%
TCTGCAGTGCAGAGGGGAAT+GGG - chr1_1:15912511-15912530 None:intergenic 55.0%
TTCTGCAGTGCAGAGGGGAA+TGG - chr1_1:15912512-15912531 None:intergenic 55.0%
GGATCTTCTGCAGTGCAGAG+GGG - chr1_1:15912517-15912536 None:intergenic 55.0%
CAGGATCTTCTGCAGTGCAG+AGG - chr1_1:15912519-15912538 None:intergenic 55.0%
CTCGTGCAGCTGGACAGGAA+AGG + chr1_1:15910123-15910142 Msa0010500:intron 60.0%
GCACCATCCGTCGGATGTGT+CGG - chr1_1:15910787-15910806 None:intergenic 60.0%
! ACATCCGACGGATGGTGCTG+TGG + chr1_1:15910789-15910808 Msa0010500:intron 60.0%
!! GGCATAGCGGATATCGGTGG+CGG - chr1_1:15910859-15910878 None:intergenic 60.0%
CGATATCCGCTATGCCGCCA+TGG + chr1_1:15910863-15910882 Msa0010500:intron 60.0%
TATCGGCCATGGCGGCATAG+CGG - chr1_1:15910872-15910891 None:intergenic 60.0%
AGTAGGTGCTTAGGAGGGGG+GGG - chr1_1:15912057-15912076 None:intergenic 60.0%
TACACCAAGCCTCCTGGCTG+AGG + chr1_1:15912175-15912194 Msa0010500:CDS 60.0%
ACACCAAGCCTCCTGGCTGA+GGG + chr1_1:15912176-15912195 Msa0010500:CDS 60.0%
CACCTAGCAGCTGTTGCGCA+TGG + chr1_1:15912255-15912274 Msa0010500:CDS 60.0%
CACCATGCGCAACAGCTGCT+AGG - chr1_1:15912260-15912279 None:intergenic 60.0%
GGCACCACAGCACCATCCGT+CGG - chr1_1:15910796-15910815 None:intergenic 65.0%
!! GGCGGCATAGCGGATATCGG+TGG - chr1_1:15910862-15910881 None:intergenic 65.0%
CAGATGAGCCCTCAGCCAGG+AGG - chr1_1:15912187-15912206 None:intergenic 65.0%
CTCCTGGCTGAGGGCTCATC+TGG + chr1_1:15912185-15912204 Msa0010500:CDS 65.0%
CACCAGATGAGCCCTCAGCC+AGG - chr1_1:15912190-15912209 None:intergenic 65.0%
GAGCCCTCAGCCAGGAGGCT+TGG - chr1_1:15912182-15912201 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 15908342 15912733 15908342 ID=Msa0010500;Name=Msa0010500
chr1_1 mRNA 15908342 15912733 15908342 ID=Msa0010500-mRNA-1;Parent=Msa0010500;Name=Msa0010500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=127|1|1|1|1|1|6|453|215
chr1_1 exon 15908342 15908616 15908342 ID=Msa0010500-mRNA-1:exon:5761;Parent=Msa0010500-mRNA-1
chr1_1 exon 15909959 15910027 15909959 ID=Msa0010500-mRNA-1:exon:5762;Parent=Msa0010500-mRNA-1
chr1_1 exon 15910132 15910197 15910132 ID=Msa0010500-mRNA-1:exon:5763;Parent=Msa0010500-mRNA-1
chr1_1 exon 15911487 15911608 15911487 ID=Msa0010500-mRNA-1:exon:5764;Parent=Msa0010500-mRNA-1
chr1_1 exon 15911727 15911855 15911727 ID=Msa0010500-mRNA-1:exon:5765;Parent=Msa0010500-mRNA-1
chr1_1 exon 15912167 15912733 15912167 ID=Msa0010500-mRNA-1:exon:5766;Parent=Msa0010500-mRNA-1
chr1_1 five_prime_UTR 15908342 15908468 15908342 ID=Msa0010500-mRNA-1:five_prime_utr;Parent=Msa0010500-mRNA-1
chr1_1 CDS 15908469 15908616 15908469 ID=Msa0010500-mRNA-1:cds;Parent=Msa0010500-mRNA-1
chr1_1 CDS 15909959 15910027 15909959 ID=Msa0010500-mRNA-1:cds;Parent=Msa0010500-mRNA-1
chr1_1 CDS 15910132 15910197 15910132 ID=Msa0010500-mRNA-1:cds;Parent=Msa0010500-mRNA-1
chr1_1 CDS 15911487 15911608 15911487 ID=Msa0010500-mRNA-1:cds;Parent=Msa0010500-mRNA-1
chr1_1 CDS 15911727 15911855 15911727 ID=Msa0010500-mRNA-1:cds;Parent=Msa0010500-mRNA-1
chr1_1 CDS 15912167 15912280 15912167 ID=Msa0010500-mRNA-1:cds;Parent=Msa0010500-mRNA-1
chr1_1 three_prime_UTR 15912281 15912733 15912281 ID=Msa0010500-mRNA-1:three_prime_utr;Parent=Msa0010500-mRNA-1
Gene Sequence

>Msa0010500

ATGGATGTTTCTTCTTCTTCGGCGAGTAACGCCGCTGAATTCGATTACTTGTTCAAGCTTCTTATGATTGGTGATTCTGGTGTTGGCAAAAGCACGTTGCTTCTTCGATTCACTTCTGATAACTTCGAAGATCTTTCTCCCACTATTGGTGTAGACTTCAAAGTTAAATATGTTACACTTGGTGGAAAGAAGTTAAAACTTGCTATATGGGACACGGCTGGACAGGAAAGGTTTCGAACACTTACTGGTTCATATTATAGAGGTGCACAAGGAATAATTATGGTATACGATGTAACGCGACGTGAAACATTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACTTATACTCAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGACAAGGAAAGTGAAAGGGCTGTTACCAAAAAGGAAGCGGTGGACTTTGCAAGGCAATATGGGTGCCTCTATACTGAATGCAGTGCAAAAACTCGAGTAAATGTTGAGCAGTGTTTTGAGGAGCTTGTAATGAAGATTTTGGATACACCAAGCCTCCTGGCTGAGGGCTCATCTGGTGTGAAAAAGAACATCTTCAAGCAGAAACCGCAAGAGTCTGATGCATCACCTAGCAGCTGTTGCGCATGGTGA
Protein sequence

>Msa0010500

MDVSSSSASNAAEFDYLFKLLMIGDSGVGKSTLLLRFTSDNFEDLSPTIGVDFKVKYVTLGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERAVTKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVMKILDTPSLLAEGSSGVKKNIFKQKPQESDASPSSCCAW*