Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144430 | XP_003588819.1 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 6.25e-126 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144430 | sp|Q6P011|EMC4_DANRE | 35.088 | 171 | 95 | 4 | 14 | 175 | 24 | 187 | 4.60e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144430 | G7I7L8 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 2.99e-126 | 361 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008200 | Msa0144430 | 0.835533 | 1.588117e-56 | -8.615850e-47 |
| Msa0010490 | Msa0144430 | 0.810516 | 1.108683e-50 | -8.615850e-47 |
| Msa0017320 | Msa0144430 | 0.803386 | 3.573892e-49 | -8.615850e-47 |
| Msa0020390 | Msa0144430 | 0.835341 | 1.775681e-56 | -8.615850e-47 |
| Msa0029260 | Msa0144430 | 0.812016 | 5.240930e-51 | -8.615850e-47 |
| Msa0029630 | Msa0144430 | 0.804051 | 2.600322e-49 | -8.615850e-47 |
| Msa0030300 | Msa0144430 | 0.834214 | 3.411493e-56 | -8.615850e-47 |
| Msa0033880 | Msa0144430 | 0.844724 | 6.331588e-59 | -8.615850e-47 |
| Msa0036540 | Msa0144430 | 0.856346 | 3.422714e-62 | -8.615850e-47 |
| Msa0047640 | Msa0144430 | 0.804716 | 1.889991e-49 | -8.615850e-47 |
| Msa0059950 | Msa0144430 | 0.826916 | 2.085661e-54 | -8.615850e-47 |
| Msa0068020 | Msa0144430 | 0.834732 | 2.528964e-56 | -8.615850e-47 |
| Msa0074750 | Msa0144430 | 0.809697 | 1.664414e-50 | -8.615850e-47 |
| Msa0077900 | Msa0144430 | 0.856440 | 3.213799e-62 | -8.615850e-47 |
| Msa0081650 | Msa0144430 | 0.804156 | 2.473318e-49 | -8.615850e-47 |
| Msa0081940 | Msa0144430 | 0.830896 | 2.268116e-55 | -8.615850e-47 |
| Msa0082050 | Msa0144430 | 0.817171 | 3.787726e-52 | -8.615850e-47 |
| Msa0090510 | Msa0144430 | 0.815638 | 8.343023e-52 | -8.615850e-47 |
| Msa0090550 | Msa0144430 | 0.816861 | 4.445214e-52 | -8.615850e-47 |
| Msa0093010 | Msa0144430 | 0.852535 | 4.330971e-61 | -8.615850e-47 |
| Msa0095360 | Msa0144430 | 0.822715 | 2.042240e-53 | -8.615850e-47 |
| Msa0095770 | Msa0144430 | 0.827194 | 1.790214e-54 | -8.615850e-47 |
| Msa0099910 | Msa0144430 | 0.814346 | 1.614511e-51 | -8.615850e-47 |
| Msa0103790 | Msa0144430 | 0.809292 | 2.033903e-50 | -8.615850e-47 |
| Msa0113240 | Msa0144430 | 0.844239 | 8.549684e-59 | -8.615850e-47 |
| Msa0115370 | Msa0144430 | 0.800822 | 1.203459e-48 | -8.615850e-47 |
| Msa0125790 | Msa0144430 | 0.810797 | 9.641536e-51 | -8.615850e-47 |
| Msa0126840 | Msa0144430 | 0.816707 | 4.812378e-52 | -8.615850e-47 |
| Msa0126880 | Msa0144430 | 0.830524 | 2.798342e-55 | -8.615850e-47 |
| Msa0127040 | Msa0144430 | 0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0127850 | Msa0144430 | 0.845632 | 3.597761e-59 | -8.615850e-47 |
| Msa0128430 | Msa0144430 | 0.818752 | 1.663275e-52 | -8.615850e-47 |
| Msa0137510 | Msa0144430 | 0.812871 | 3.408561e-51 | -8.615850e-47 |
| Msa0139670 | Msa0144430 | 0.830732 | 2.488974e-55 | -8.615850e-47 |
| Msa0142410 | Msa0144430 | 0.818231 | 2.183105e-52 | -8.615850e-47 |
| Msa0142500 | Msa0144430 | 0.801327 | 9.488420e-49 | -8.615850e-47 |
| Msa0144420 | Msa0144430 | 0.974454 | 3.484084e-138 | -8.615850e-47 |
| Msa0144430 | Msa0146080 | 0.829730 | 4.370559e-55 | -8.615850e-47 |
| Msa0144430 | Msa0146420 | 0.824551 | 7.590653e-54 | -8.615850e-47 |
| Msa0144430 | Msa0149440 | 0.840041 | 1.103708e-57 | -8.615850e-47 |
| Msa0144430 | Msa0150260 | 0.803785 | 2.952928e-49 | -8.615850e-47 |
| Msa0144430 | Msa0169300 | 0.810767 | 9.787811e-51 | -8.615850e-47 |
| Msa0144430 | Msa0170430 | 0.804016 | 2.644603e-49 | -8.615850e-47 |
| Msa0144430 | Msa0171940 | 0.804497 | 2.099824e-49 | -8.615850e-47 |
| Msa0144430 | Msa0171980 | 0.816682 | 4.875363e-52 | -8.615850e-47 |
| Msa0144430 | Msa0174000 | 0.834642 | 2.663376e-56 | -8.615850e-47 |
| Msa0144430 | Msa0183870 | 0.841656 | 4.162874e-58 | -8.615850e-47 |
| Msa0144430 | Msa0183910 | 0.825938 | 3.567495e-54 | -8.615850e-47 |
| Msa0144430 | Msa0191070 | 0.840164 | 1.025602e-57 | -8.615850e-47 |
| Msa0144430 | Msa0202410 | 0.821105 | 4.817321e-53 | -8.615850e-47 |
| Msa0144430 | Msa0202490 | 0.800316 | 1.526328e-48 | -8.615850e-47 |
| Msa0144430 | Msa0209080 | 0.800037 | 1.738861e-48 | -8.615850e-47 |
| Msa0144430 | Msa0216850 | -0.800414 | 1.457619e-48 | -8.615850e-47 |
| Msa0144430 | Msa0230530 | 0.812212 | 4.749417e-51 | -8.615850e-47 |
| Msa0144430 | Msa0231790 | 0.801037 | 1.087478e-48 | -8.615850e-47 |
| Msa0144430 | Msa0233370 | 0.845399 | 4.160738e-59 | -8.615850e-47 |
| Msa0144430 | Msa0241830 | 0.810517 | 1.108129e-50 | -8.615850e-47 |
| Msa0144430 | Msa0244970 | 0.839467 | 1.557198e-57 | -8.615850e-47 |
| Msa0144430 | Msa0244980 | 0.850344 | 1.804665e-60 | -8.615850e-47 |
| Msa0144430 | Msa0245430 | 0.848717 | 5.131478e-60 | -8.615850e-47 |
| Msa0144430 | Msa0245580 | 0.842573 | 2.381256e-58 | -8.615850e-47 |
| Msa0144430 | Msa0257490 | 0.838614 | 2.589405e-57 | -8.615850e-47 |
| Msa0144430 | Msa0265600 | 0.812774 | 3.579249e-51 | -8.615850e-47 |
| Msa0144430 | Msa0269470 | 0.863980 | 1.689534e-64 | -8.615850e-47 |
| Msa0144430 | Msa0283420 | 0.842437 | 2.587571e-58 | -8.615850e-47 |
| Msa0144430 | Msa0284180 | 0.820220 | 7.695317e-53 | -8.615850e-47 |
| Msa0144430 | Msa0296790 | 0.838136 | 3.440360e-57 | -8.615850e-47 |
| Msa0144430 | Msa0296920 | 0.861529 | 9.623649e-64 | -8.615850e-47 |
| Msa0144430 | Msa0300280 | 0.806091 | 9.734252e-50 | -8.615850e-47 |
| Msa0144430 | Msa0303460 | 0.806940 | 6.443000e-50 | -8.615850e-47 |
| Msa0144430 | Msa0311720 | 0.817964 | 2.508723e-52 | -8.615850e-47 |
| Msa0144430 | Msa0317970 | 0.806377 | 8.471483e-50 | -8.615850e-47 |
| Msa0144430 | Msa0321690 | 0.834932 | 2.251797e-56 | -8.615850e-47 |
| Msa0144430 | Msa0322240 | 0.826816 | 2.204280e-54 | -8.615850e-47 |
| Msa0144430 | Msa0322900 | 0.806865 | 6.684466e-50 | -8.615850e-47 |
| Msa0144430 | Msa0336450 | 0.826821 | 2.198180e-54 | -8.615850e-47 |
| Msa0144430 | Msa0336540 | 0.803557 | 3.292753e-49 | -8.615850e-47 |
| Msa0144430 | Msa0378010 | 0.812132 | 4.944778e-51 | -8.615850e-47 |
| Msa0144430 | Msa0382310 | 0.851482 | 8.622358e-61 | -8.615850e-47 |
| Msa0144430 | Msa0382370 | 0.827432 | 1.569872e-54 | -8.615850e-47 |
| Msa0144430 | Msa0385500 | 0.847739 | 9.555896e-60 | -8.615850e-47 |
| Msa0144430 | Msa0403770 | 0.812244 | 4.674040e-51 | -8.615850e-47 |
| Msa0144430 | Msa0404050 | 0.809951 | 1.467692e-50 | -8.615850e-47 |
| Msa0144430 | Msa0427580 | 0.832370 | 9.826419e-56 | -8.615850e-47 |
| Msa0144430 | Msa0427860 | -0.805665 | 1.196514e-49 | -8.615850e-47 |
| Msa0144430 | Msa0430240 | 0.804243 | 2.371859e-49 | -8.615850e-47 |
| Msa0144430 | Msa0431210 | 0.835405 | 1.710185e-56 | -8.615850e-47 |
| Msa0144430 | Msa0432160 | 0.803827 | 2.894817e-49 | -8.615850e-47 |
| Msa0144430 | Msa0460740 | 0.804739 | 1.869504e-49 | -8.615850e-47 |
| Msa0144430 | Msa0474090 | -0.805272 | 1.446488e-49 | -8.615850e-47 |
| Msa0144430 | Msa0476680 | 0.805100 | 1.570987e-49 | -8.615850e-47 |
| Msa0144430 | Msa0482940 | 0.816807 | 4.571351e-52 | -8.615850e-47 |
| Msa0144430 | Msa0485710 | 0.805991 | 1.021820e-49 | -8.615850e-47 |
| Msa0144430 | Msa0491000 | 0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0144430 | Msa0518170 | 0.827967 | 1.167557e-54 | -8.615850e-47 |
| Msa0144430 | Msa0520270 | 0.843660 | 1.222403e-58 | -8.615850e-47 |
| Msa0144430 | Msa0521010 | 0.801273 | 9.733324e-49 | -8.615850e-47 |
| Msa0144430 | Msa0531250 | 0.802032 | 6.799490e-49 | -8.615850e-47 |
| Msa0144430 | Msa0544540 | 0.827297 | 1.691095e-54 | -8.615850e-47 |
| Msa0144430 | Msa0547160 | 0.812984 | 3.218955e-51 | -8.615850e-47 |
| Msa0144430 | Msa0547990 | 0.831925 | 1.265731e-55 | -8.615850e-47 |
| Msa0144430 | Msa0560500 | 0.825585 | 4.325457e-54 | -8.615850e-47 |
| Msa0144430 | Msa0569960 | 0.811770 | 5.927804e-51 | -8.615850e-47 |
| Msa0144430 | Msa0580230 | 0.800003 | 1.766753e-48 | -8.615850e-47 |
| Msa0144430 | Msa0581110 | 0.826813 | 2.207336e-54 | -8.615850e-47 |
| Msa0144430 | Msa0583670 | 0.821022 | 5.035432e-53 | -8.615850e-47 |
| Msa0144430 | Msa0593700 | 0.831437 | 1.670389e-55 | -8.615850e-47 |
| Msa0144430 | Msa0600450 | 0.806010 | 1.012514e-49 | -8.615850e-47 |
| Msa0144430 | Msa0605510 | 0.831187 | 1.923751e-55 | -8.615850e-47 |
| Msa0144430 | Msa0607690 | 0.811197 | 7.895666e-51 | -8.615850e-47 |
| Msa0144430 | Msa0610250 | 0.804787 | 1.826972e-49 | -8.615850e-47 |
| Msa0144430 | Msa0610550 | 0.817792 | 2.744214e-52 | -8.615850e-47 |
| Msa0144430 | Msa0615580 | 0.806765 | 7.016079e-50 | -8.615850e-47 |
| Msa0144430 | Msa0618950 | 0.815405 | 9.401308e-52 | -8.615850e-47 |
| Msa0144430 | Msa0622790 | 0.814050 | 1.876709e-51 | -8.615850e-47 |
| Msa0144430 | Msa0628420 | 0.800476 | 1.416028e-48 | -8.615850e-47 |
| Msa0144430 | Msa0633570 | 0.835218 | 1.907384e-56 | -8.615850e-47 |
| Msa0144430 | Msa0640940 | 0.803933 | 2.751949e-49 | -8.615850e-47 |
| Msa0144430 | Msa0642970 | 0.827869 | 1.232852e-54 | -8.615850e-47 |
| Msa0144430 | Msa0644030 | 0.816672 | 4.900785e-52 | -8.615850e-47 |
| Msa0144430 | Msa0646470 | 0.843766 | 1.145273e-58 | -8.615850e-47 |
| Msa0144430 | Msa0657120 | 0.821779 | 3.366862e-53 | -8.615850e-47 |
| Msa0144430 | Msa0659790 | 0.818140 | 2.289226e-52 | -8.615850e-47 |
| Msa0144430 | Msa0662630 | 0.841142 | 5.684610e-58 | -8.615850e-47 |
| Msa0144430 | Msa0679360 | 0.817404 | 3.356356e-52 | -8.615850e-47 |
| Msa0144430 | Msa0689440 | 0.841538 | 4.473050e-58 | -8.615850e-47 |
| Msa0144430 | Msa0693210 | 0.832101 | 1.145741e-55 | -8.615850e-47 |
| Msa0144430 | Msa0697720 | 0.828914 | 6.897061e-55 | -8.615850e-47 |
| Msa0144430 | Msa0701100 | 0.825047 | 5.799607e-54 | -8.615850e-47 |
| Msa0144430 | Msa0705390 | 0.838016 | 3.693108e-57 | -8.615850e-47 |
| Msa0144430 | Msa0709120 | 0.830409 | 2.984918e-55 | -8.615850e-47 |
| Msa0144430 | Msa0746170 | 0.830366 | 3.057739e-55 | -8.615850e-47 |
| Msa0144430 | Msa0746210 | 0.828255 | 9.949670e-55 | -8.615850e-47 |
| Msa0144430 | Msa0800370 | 0.834971 | 2.201366e-56 | -8.615850e-47 |
| Msa0144430 | Msa0822180 | 0.802959 | 4.379359e-49 | -8.615850e-47 |
| Msa0144430 | Msa0831100 | 0.809879 | 1.521444e-50 | -8.615850e-47 |
| Msa0144430 | Msa0833190 | -0.819315 | 1.239146e-52 | -8.615850e-47 |
| Msa0144430 | Msa0838370 | 0.838927 | 2.150033e-57 | -8.615850e-47 |
| Msa0144430 | Msa0844280 | 0.802138 | 6.467274e-49 | -8.615850e-47 |
| Msa0144430 | Msa0858440 | 0.828036 | 1.123583e-54 | -8.615850e-47 |
| Msa0144430 | Msa0880730 | 0.809894 | 1.510093e-50 | -8.615850e-47 |
| Msa0144430 | Msa0892640 | 0.807522 | 4.850827e-50 | -8.615850e-47 |
| Msa0144430 | Msa0903780 | 0.800026 | 1.747903e-48 | -8.615850e-47 |
| Msa0144430 | Msa0905750 | 0.801285 | 9.676898e-49 | -8.615850e-47 |
| Msa0144430 | Msa0907850 | 0.807865 | 4.102934e-50 | -8.615850e-47 |
| Msa0144430 | Msa0913240 | 0.814427 | 1.549607e-51 | -8.615850e-47 |
| Msa0144430 | Msa0968440 | 0.807351 | 5.274088e-50 | -8.615850e-47 |
| Msa0144430 | Msa0971850 | 0.814024 | 1.902092e-51 | -8.615850e-47 |
| Msa0144430 | Msa0980540 | 0.811326 | 7.404863e-51 | -8.615850e-47 |
| Msa0144430 | Msa1007290 | 0.803292 | 3.737902e-49 | -8.615850e-47 |
| Msa0144430 | Msa1025940 | 0.801808 | 7.561226e-49 | -8.615850e-47 |
| Msa0144430 | Msa1039810 | 0.843137 | 1.685302e-58 | -8.615850e-47 |
| Msa0144430 | Msa1039900 | 0.840065 | 1.087960e-57 | -8.615850e-47 |
| Msa0144430 | Msa1043630 | 0.836070 | 1.160411e-56 | -8.615850e-47 |
| Msa0144430 | Msa1072710 | 0.807348 | 5.280577e-50 | -8.615850e-47 |
| Msa0144430 | Msa1074110 | 0.837538 | 4.901108e-57 | -8.615850e-47 |
| Msa0144430 | Msa1089320 | 0.810336 | 1.212673e-50 | -8.615850e-47 |
| Msa0144430 | Msa1089450 | 0.810956 | 8.908311e-51 | -8.615850e-47 |
| Msa0144430 | Msa1107200 | 0.801873 | 7.332193e-49 | -8.615850e-47 |
| Msa0144430 | Msa1109780 | -0.846156 | 2.592236e-59 | -8.615850e-47 |
| Msa0144430 | Msa1123350 | 0.854824 | 9.517555e-62 | -8.615850e-47 |
| Msa0144430 | Msa1123780 | 0.800348 | 1.503077e-48 | -8.615850e-47 |
| Msa0144430 | Msa1126830 | 0.827961 | 1.171638e-54 | -8.615850e-47 |
| Msa0144430 | Msa1128270 | 0.849923 | 2.367213e-60 | -8.615850e-47 |
| Msa0144430 | Msa1128280 | 0.855434 | 6.323554e-62 | -8.615850e-47 |
| Msa0144430 | Msa1131090 | 0.818019 | 2.439013e-52 | -8.615850e-47 |
| Msa0144430 | Msa1165270 | 0.866552 | 2.623662e-65 | -8.615850e-47 |
| Msa0144430 | Msa1165780 | 0.852380 | 4.794341e-61 | -8.615850e-47 |
| Msa0144430 | Msa1169920 | 0.801119 | 1.046400e-48 | -8.615850e-47 |
| Msa0144430 | Msa1178580 | 0.821651 | 3.605387e-53 | -8.615850e-47 |
| Msa0144430 | Msa1183140 | 0.819686 | 1.019745e-52 | -8.615850e-47 |
| Msa0144430 | Msa1194230 | 0.806317 | 8.723705e-50 | -8.615850e-47 |
| Msa0144430 | Msa1197070 | 0.801505 | 8.724477e-49 | -8.615850e-47 |
| Msa0144430 | Msa1205590 | 0.805069 | 1.594998e-49 | -8.615850e-47 |
| Msa0144430 | Msa1206650 | 0.881732 | 1.879473e-70 | -8.615850e-47 |
| Msa0144430 | Msa1208020 | 0.808551 | 2.930007e-50 | -8.615850e-47 |
| Msa0144430 | Msa1218500 | 0.809568 | 1.774742e-50 | -8.615850e-47 |
| Msa0144430 | Msa1229480 | 0.800301 | 1.537183e-48 | -8.615850e-47 |
| Msa0144430 | Msa1233850 | 0.847052 | 1.476153e-59 | -8.615850e-47 |
| Msa0144430 | Msa1234620 | 0.814490 | 1.500701e-51 | -8.615850e-47 |
| Msa0144430 | Msa1264210 | 0.813966 | 1.958885e-51 | -8.615850e-47 |
| Msa0144430 | Msa1276150 | 0.818056 | 2.391516e-52 | -8.615850e-47 |
| Msa0144430 | Msa1276970 | 0.829703 | 4.438955e-55 | -8.615850e-47 |
| Msa0144430 | Msa1277410 | 0.817078 | 3.974154e-52 | -8.615850e-47 |
| Msa0144430 | Msa1298100 | 0.899060 | 2.880287e-77 | -8.615850e-47 |
| Msa0144430 | Msa1304810 | 0.824548 | 7.606217e-54 | -8.615850e-47 |
| Msa0144430 | Msa1307160 | 0.827511 | 1.502558e-54 | -8.615850e-47 |
| Msa0144430 | Msa1307180 | 0.862039 | 6.718789e-64 | -8.615850e-47 |
| Msa0144430 | Msa1309760 | 0.804762 | 1.849104e-49 | -8.615850e-47 |
| Msa0144430 | Msa1316360 | 0.855730 | 5.183593e-62 | -8.615850e-47 |
| Msa0144430 | Msa1336040 | 0.800235 | 1.585086e-48 | -8.615850e-47 |
| Msa0144430 | Msa1336560 | 0.837460 | 5.132262e-57 | -8.615850e-47 |
| Msa0144430 | Msa1341060 | 0.801007 | 1.103097e-48 | -8.615850e-47 |
| Msa0144430 | Msa1351540 | 0.833473 | 5.226918e-56 | -8.615850e-47 |
| Msa0144430 | Msa1352890 | 0.814589 | 1.426521e-51 | -8.615850e-47 |
| Msa0144430 | Msa1356610 | 0.829072 | 6.317232e-55 | -8.615850e-47 |
| Msa0144430 | Msa1364210 | 0.812080 | 5.074659e-51 | -8.615850e-47 |
| Msa0144430 | Msa1369690 | 0.812251 | 4.656324e-51 | -8.615850e-47 |
| Msa0144430 | Msa1369890 | 0.808867 | 2.507448e-50 | -8.615850e-47 |
| Msa0144430 | Msa1370590 | 0.822467 | 2.332398e-53 | -8.615850e-47 |
| Msa0144430 | Msa1374170 | 0.872552 | 2.913961e-67 | -8.615850e-47 |
| Msa0144430 | Msa1382020 | 0.838217 | 3.279447e-57 | -8.615850e-47 |
| Msa0144430 | Msa1382670 | 0.869258 | 3.542162e-66 | -8.615850e-47 |
| Msa0144430 | Msa1384100 | 0.821968 | 3.044450e-53 | -8.615850e-47 |
| Msa0144430 | Msa1385730 | 0.800915 | 1.151858e-48 | -8.615850e-47 |
| Msa0144430 | Msa1391480 | 0.815676 | 8.182876e-52 | -8.615850e-47 |
| Msa0144430 | Msa1395730 | 0.852607 | 4.131534e-61 | -8.615850e-47 |
| Msa0144430 | Msa1398790 | 0.810535 | 1.098453e-50 | -8.615850e-47 |
| Msa0144430 | Msa1407190 | 0.806854 | 6.720618e-50 | -8.615850e-47 |
| Msa0144430 | Msa1411950 | 0.805317 | 1.415197e-49 | -8.615850e-47 |
| Msa0144430 | Msa1412110 | 0.814254 | 1.691825e-51 | -8.615850e-47 |
| Msa0144430 | Msa1421560 | 0.800940 | 1.138291e-48 | -8.615850e-47 |
| Msa0144430 | Msa1432130 | 0.801570 | 8.460016e-49 | -8.615850e-47 |
| Msa0144430 | Msa1444120 | 0.817681 | 2.906865e-52 | -8.615850e-47 |
| Msa0144430 | Msa1447890 | 0.851246 | 1.005902e-60 | -8.615850e-47 |
| Msa0144430 | Msa1450720 | 0.803112 | 4.072879e-49 | -8.615850e-47 |
| Msa0144430 | Msa1458090 | 0.806794 | 6.917891e-50 | -8.615850e-47 |
| Msa0144430 | Msa1459960 | 0.815426 | 9.300651e-52 | -8.615850e-47 |
| Msa0144430 | Msa1462470 | 0.812213 | 4.748405e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144430 | MtrunA17_Chr8g0347021 | 99.160 | 119 | 1 | 0 | 60 | 178 | 28 | 146 | 2.74e-83 | 242 |
| Msa0144430 | MtrunA17_Chr8g0347341 | 100.000 | 118 | 0 | 0 | 61 | 178 | 179 | 296 | 8.40e-81 | 241 |
| Msa0144430 | MtrunA17_Chr8g0347341 | 92.063 | 63 | 5 | 0 | 1 | 63 | 1 | 63 | 5.38e-34 | 121 |
| Msa0144430 | MtrunA17_Chr1g0150351 | 90.984 | 122 | 0 | 1 | 1 | 111 | 1 | 122 | 1.25e-74 | 220 |
| Msa0144430 | MtrunA17_Chr8g0347031 | 93.651 | 63 | 4 | 0 | 1 | 63 | 1 | 63 | 1.67e-36 | 121 |
| Msa0144430 | MtrunA17_Chr8g0347041 | 92.063 | 63 | 5 | 0 | 1 | 63 | 1 | 63 | 1.70e-34 | 121 |
| Msa0144430 | MtrunA17_Chr8g0347041 | 92.157 | 51 | 0 | 1 | 61 | 111 | 179 | 225 | 7.24e-24 | 94.0 |
| Msa0144430 | MtrunA17_Chr1g0150341 | 98.182 | 55 | 1 | 0 | 112 | 166 | 7 | 61 | 4.80e-33 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144430 | AT5G10780.1 | 81.768 | 181 | 29 | 2 | 1 | 178 | 1 | 180 | 3.52e-88 | 256 |
| Msa0144430 | AT5G10780.2 | 82.840 | 169 | 25 | 2 | 1 | 166 | 1 | 168 | 8.18e-82 | 240 |
Find 93 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTCTTGGAGGAATTTA+AGG | 0.091841 | 1_4:+3927769 | Msa0144430:three_prime_UTR |
| GGTATTCATCGCCCTTAATT+TGG | 0.174653 | 1_4:+3926544 | Msa0144430:CDS |
| TCTTCAGCGATTCAATTAAA+TGG | 0.185762 | 1_4:+3924848 | Msa0144430:exon |
| AACACTCTGTAAGGCACTTA+TGG | 0.194375 | 1_4:-3925604 | None:intergenic |
| TACTGCAAATCTGATGTAAA+AGG | 0.202542 | 1_4:+3928012 | Msa0144430:three_prime_UTR |
| ATCATTAACAAGTTCTTAAA+TGG | 0.219625 | 1_4:-3925504 | None:intergenic |
| GTAACATGCCTCCCAAATTA+AGG | 0.244098 | 1_4:-3926556 | None:intergenic |
| CTTGGAGGAATTTAAGGATT+TGG | 0.280619 | 1_4:+3927775 | Msa0144430:three_prime_UTR |
| CTTCACAATGGGAAGGTTAC+AGG | 0.295260 | 1_4:-3928147 | None:intergenic |
| TGAAGCAGGTATACAAAATA+TGG | 0.299528 | 1_4:+3928165 | Msa0144430:three_prime_UTR |
| TGGATTCAGCATCTTTCTTT+TGG | 0.301710 | 1_4:-3925010 | None:intergenic |
| CTGAAAGAACAATAAGAATT+CGG | 0.312632 | 1_4:-3928092 | None:intergenic |
| TCTTCTGCAGCTCAATTCAT+TGG | 0.332546 | 1_4:+3926954 | Msa0144430:intron |
| CTTTGTATCTCTTTGTATGT+AGG | 0.333936 | 1_4:+3927950 | Msa0144430:three_prime_UTR |
| GTATCACCTTCTCAGCTCTT+TGG | 0.334333 | 1_4:+3925577 | Msa0144430:CDS |
| AAGGGTGTGATGGGATCTTC+TGG | 0.346236 | 1_4:+3924879 | Msa0144430:CDS |
| GTATTCATCGCCCTTAATTT+GGG | 0.348550 | 1_4:+3926545 | Msa0144430:CDS |
| TACAAACCATGTCTAATCTT+TGG | 0.367592 | 1_4:-3927888 | None:intergenic |
| CTCTTTCATTCATTCATAGT+TGG | 0.368002 | 1_4:+3924764 | None:intergenic |
| GATGCTAAAGTGGAGCTTCT+TGG | 0.369452 | 1_4:+3926512 | Msa0144430:CDS |
| AATAGCATACTAGAAATGTT+AGG | 0.385259 | 1_4:+3928036 | Msa0144430:three_prime_UTR |
| ATTTAAGAACTTGTTAATGA+TGG | 0.394212 | 1_4:+3925506 | Msa0144430:CDS |
| ATCGCGAGAAGTTGAATTAT+CGG | 0.394794 | 1_4:-3924925 | None:intergenic |
| GAGGGAAGCGCGTGAGAAAC+CGG | 0.398618 | 1_4:-3924961 | None:intergenic |
| AATTTGGGAGGCATGTTACT+AGG | 0.402445 | 1_4:+3926560 | Msa0144430:CDS |
| GAGGCATGTTACTAGGTGTT+TGG | 0.405795 | 1_4:+3926567 | Msa0144430:CDS |
| CGATTCAATTAAATGGATAA+AGG | 0.406344 | 1_4:+3924855 | Msa0144430:exon |
| ATGCTAAAGTGGAGCTTCTT+GGG | 0.409851 | 1_4:+3926513 | Msa0144430:CDS |
| TCCACTTTAGCATCTTTGTA+AGG | 0.413449 | 1_4:-3926503 | None:intergenic |
| TGAAAGAACAATAAGAATTC+GGG | 0.413709 | 1_4:-3928091 | None:intergenic |
| CTTCTGCAGCTCAATTCATT+GGG | 0.415950 | 1_4:+3926955 | Msa0144430:intron |
| TGGTCACAAATGATCTCATT+AGG | 0.422294 | 1_4:+3927817 | Msa0144430:three_prime_UTR |
| AAGAATGAGTGAAGAGAAGA+AGG | 0.424461 | 1_4:-3924829 | None:intergenic |
| ATTGTTGGAAACAGAAAGCT+TGG | 0.427332 | 1_4:+3925466 | Msa0144430:intron |
| ACACTCTGTAAGGCACTTAT+GGG | 0.435288 | 1_4:-3925603 | None:intergenic |
| TTTAAGAACTTGTTAATGAT+GGG | 0.445845 | 1_4:+3925507 | Msa0144430:CDS |
| AGAAAGATGCTGAATCCAAT+TGG | 0.446637 | 1_4:+3925015 | Msa0144430:CDS |
| TAACCTTCCCATTGTGAAGC+AGG | 0.447117 | 1_4:+3928151 | Msa0144430:three_prime_UTR |
| ATAGCATACTAGAAATGTTA+GGG | 0.456027 | 1_4:+3928037 | Msa0144430:three_prime_UTR |
| TAACATGCCTCCCAAATTAA+GGG | 0.464691 | 1_4:-3926555 | None:intergenic |
| GGGTTTATGATGTGGATGGC+TGG | 0.475763 | 1_4:+3925528 | Msa0144430:CDS |
| AACATAGACATTTAAAAGAA+AGG | 0.477427 | 1_4:-3928118 | None:intergenic |
| TTGTATACCTGCTTCACAAT+GGG | 0.483638 | 1_4:-3928158 | None:intergenic |
| TTCCTACCCACACATCAGAC+TGG | 0.494006 | 1_4:+3926983 | Msa0144430:CDS |
| TGGGATCTTCTGGACGAAGA+TGG | 0.499581 | 1_4:+3924889 | Msa0144430:CDS |
| TGAATCCAATTGGAAATCTC+AGG | 0.499594 | 1_4:+3925025 | Msa0144430:CDS |
| AAAGAAAATCCAACCTGAGC+AGG | 0.500189 | 1_4:-3927021 | None:intergenic |
| TCTTTGGTGACTGCAAGTAT+TGG | 0.501455 | 1_4:-3927872 | None:intergenic |
| CAGGAGGTGGAGTACTCAGG+TGG | 0.509179 | 1_4:+3927704 | Msa0144430:intron |
| GTCATCCTTAGCACCTGCTC+AGG | 0.516236 | 1_4:+3927008 | Msa0144430:CDS |
| GTACTGTTAGCATGTTGTAA+TGG | 0.518335 | 1_4:+3927797 | Msa0144430:three_prime_UTR |
| GATAAAGGAAAGGGTGTGAT+GGG | 0.521901 | 1_4:+3924870 | Msa0144430:CDS |
| CTTCAGGAGGTGGAGTACTC+AGG | 0.524189 | 1_4:+3927701 | Msa0144430:intron |
| GAGGTGGAGTACTCAGGTGG+GGG | 0.524742 | 1_4:+3927707 | Msa0144430:CDS |
| GGATAAAGGAAAGGGTGTGA+TGG | 0.525644 | 1_4:+3924869 | Msa0144430:CDS |
| GGAGCTTCTTGGGCCTAAGT+TGG | 0.528352 | 1_4:+3926523 | Msa0144430:CDS |
| CGCGATATTATCGATCCTCC+CGG | 0.529746 | 1_4:+3924942 | Msa0144430:CDS |
| ACCTTACAAAGATGCTAAAG+TGG | 0.529869 | 1_4:+3926502 | Msa0144430:CDS |
| GGGATCTTCTGGACGAAGAT+GGG | 0.531311 | 1_4:+3924890 | Msa0144430:CDS |
| ACTGTTCACTTGTTTAGCAT+CGG | 0.532087 | 1_4:+3925555 | Msa0144430:CDS |
| GCATACCTGAGATTTCCAAT+TGG | 0.533753 | 1_4:-3925030 | None:intergenic |
| AGGAGGTGGAGTACTCAGGT+GGG | 0.535718 | 1_4:+3927705 | Msa0144430:intron |
| AATTAAATGGATAAAGGAAA+GGG | 0.536006 | 1_4:+3924861 | Msa0144430:exon |
| CATGTTACTAGGTGTTTGGA+AGG | 0.537062 | 1_4:+3926571 | Msa0144430:CDS |
| GAAAGCTTGGGAAGTTGCAC+AGG | 0.537408 | 1_4:+3925479 | Msa0144430:intron |
| TCCAACCTGAGCAGGTGCTA+AGG | 0.537452 | 1_4:-3927013 | None:intergenic |
| CAGTCACCAAAGATTAGACA+TGG | 0.538585 | 1_4:+3927882 | Msa0144430:three_prime_UTR |
| CTTAAGAACTGGAGCATCAA+CGG | 0.547901 | 1_4:-3927739 | None:intergenic |
| GGAGGTGGAGTACTCAGGTG+GGG | 0.550312 | 1_4:+3927706 | Msa0144430:intron |
| TCCTACCCACACATCAGACT+GGG | 0.552562 | 1_4:+3926984 | Msa0144430:CDS |
| CAATTAAATGGATAAAGGAA+AGG | 0.554170 | 1_4:+3924860 | Msa0144430:exon |
| AGGGCGATGAATACCAACTT+AGG | 0.558217 | 1_4:-3926536 | None:intergenic |
| AGGGAAGCGCGTGAGAAACC+GGG | 0.558868 | 1_4:-3924960 | None:intergenic |
| TTGTTGGAAACAGAAAGCTT+GGG | 0.565750 | 1_4:+3925467 | Msa0144430:intron |
| TTAAGAACTTGTTAATGATG+GGG | 0.568371 | 1_4:+3925508 | Msa0144430:CDS |
| TTTGTATACCTGCTTCACAA+TGG | 0.573399 | 1_4:-3928159 | None:intergenic |
| TTCATCGCCCTTAATTTGGG+AGG | 0.578157 | 1_4:+3926548 | Msa0144430:CDS |
| GGGTTGCCAAAGAGCTGAGA+AGG | 0.582231 | 1_4:-3925583 | None:intergenic |
| GGTAGAATCGTCTTGATCGA+GGG | 0.585755 | 1_4:-3924979 | None:intergenic |
| AGAATGAGTGAAGAGAAGAA+GGG | 0.591696 | 1_4:-3924828 | None:intergenic |
| TAATGATGGGGTTTATGATG+TGG | 0.592983 | 1_4:+3925520 | Msa0144430:CDS |
| ATAAGTGCCTTACAGAGTGT+TGG | 0.594768 | 1_4:+3925606 | Msa0144430:CDS |
| GGGTAGAATCGTCTTGATCG+AGG | 0.613210 | 1_4:-3924980 | None:intergenic |
| TGAATTATCGGAGAAATCAA+CGG | 0.616548 | 1_4:-3924913 | None:intergenic |
| ATACCTGCTTCACAATGGGA+AGG | 0.628040 | 1_4:-3928154 | None:intergenic |
| ACATACAAAGAGATACAAAG+AGG | 0.639704 | 1_4:-3927947 | None:intergenic |
| GATGGGGTTTATGATGTGGA+TGG | 0.644891 | 1_4:+3925524 | Msa0144430:CDS |
| CATACTAGAAATGTTAGGGG+AGG | 0.666754 | 1_4:+3928041 | Msa0144430:three_prime_UTR |
| TGACACCCAGTCTGATGTGT+GGG | 0.677476 | 1_4:-3926989 | None:intergenic |
| TAGCATACTAGAAATGTTAG+GGG | 0.703626 | 1_4:+3928038 | Msa0144430:three_prime_UTR |
| ATGACACCCAGTCTGATGTG+TGG | 0.709294 | 1_4:-3926990 | None:intergenic |
| GAAGCGCGTGAGAAACCGGG+AGG | 0.725314 | 1_4:-3924957 | None:intergenic |
| ACCCAGTCTGATGTGTGGGT+AGG | 0.740029 | 1_4:-3926985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGATTAATTATATTGT+TGG | + | chr1_4:3925451-3925470 | Msa0144430:intron | 10.0% |
| !! | GAAAAATAATAATAAGTATA+TGG | - | chr1_4:3926913-3926932 | None:intergenic | 10.0% |
| !! | AAAATACAGAAATTATACAT+AGG | - | chr1_4:3925106-3925125 | None:intergenic | 15.0% |
| !! | TATTTAACAAAACAACAAAA+AGG | - | chr1_4:3925666-3925685 | None:intergenic | 15.0% |
| !! | TTTATATTATGGATGAAATT+AGG | + | chr1_4:3925886-3925905 | Msa0144430:intron | 15.0% |
| !! | TATGTTCTATAATATATTTG+AGG | + | chr1_4:3926823-3926842 | Msa0144430:intron | 15.0% |
| !! | TTGTATGTTATTAAAATGTT+TGG | + | chr1_4:3927214-3927233 | Msa0144430:intron | 15.0% |
| !! | TGTATGTTATTAAAATGTTT+GGG | + | chr1_4:3927215-3927234 | Msa0144430:intron | 15.0% |
| !! | TTTGAAAATAAATCTATAAC+TGG | + | chr1_4:3927553-3927572 | Msa0144430:intron | 15.0% |
| !!! | AAAAAAAATCTATAACTTGT+TGG | + | chr1_4:3927586-3927605 | Msa0144430:intron | 15.0% |
| !! | AATTAAATGGATAAAGGAAA+GGG | + | chr1_4:3924861-3924880 | Msa0144430:exon | 20.0% |
| !! | AGTTACAATAATTAGTTACA+TGG | - | chr1_4:3925377-3925396 | None:intergenic | 20.0% |
| !! | ATCATTAACAAGTTCTTAAA+TGG | - | chr1_4:3925507-3925526 | None:intergenic | 20.0% |
| !!! | ATTTAAGAACTTGTTAATGA+TGG | + | chr1_4:3925506-3925525 | Msa0144430:CDS | 20.0% |
| !!! | TTTAAGAACTTGTTAATGAT+GGG | + | chr1_4:3925507-3925526 | Msa0144430:CDS | 20.0% |
| !! | CAATGTTGATATTATTAGAA+TGG | - | chr1_4:3925748-3925767 | None:intergenic | 20.0% |
| !! | ATACAATTACAATCATTGAA+TGG | - | chr1_4:3925800-3925819 | None:intergenic | 20.0% |
| !!! | GAGGTTGATTATTTATATTA+TGG | + | chr1_4:3925875-3925894 | Msa0144430:intron | 20.0% |
| !!! | CTTAATATGTATTTGTTGAA+TGG | + | chr1_4:3926162-3926181 | Msa0144430:intron | 20.0% |
| !!! | GAACACTTTATTTTAAATTG+TGG | + | chr1_4:3926318-3926337 | Msa0144430:intron | 20.0% |
| !!! | TTTAACTCATTTTTGTTTCA+AGG | - | chr1_4:3926607-3926626 | None:intergenic | 20.0% |
| !!! | TTACCTCAAATTTTAAGTTT+TGG | + | chr1_4:3926768-3926787 | Msa0144430:intron | 20.0% |
| !!! | CTATAATATATTTGAGGTTT+AGG | + | chr1_4:3926829-3926848 | Msa0144430:intron | 20.0% |
| !! | TTAATAACATACAATGCTAT+GGG | - | chr1_4:3927208-3927227 | None:intergenic | 20.0% |
| !! | TTTAATAACATACAATGCTA+TGG | - | chr1_4:3927209-3927228 | None:intergenic | 20.0% |
| !!! | TGGTTTTTTTTTTTTTTCCT+GGG | - | chr1_4:3927257-3927276 | None:intergenic | 20.0% |
| !!! | CATTATTTCTGATATTAAAG+TGG | - | chr1_4:3927527-3927546 | None:intergenic | 20.0% |
| !!! | AGTTATAGATTTTTTTTCAG+TGG | - | chr1_4:3927583-3927602 | None:intergenic | 20.0% |
| !! | AACATAGACATTTAAAAGAA+AGG | - | chr1_4:3928121-3928140 | None:intergenic | 20.0% |
| ! | CGATTCAATTAAATGGATAA+AGG | + | chr1_4:3924855-3924874 | Msa0144430:exon | 25.0% |
| ! | CAATTAAATGGATAAAGGAA+AGG | + | chr1_4:3924860-3924879 | Msa0144430:exon | 25.0% |
| ! | TCAACTGATAATAAACGAAA+GGG | - | chr1_4:3925240-3925259 | None:intergenic | 25.0% |
| !! | AACAATCGTAAATAGTTTGT+TGG | - | chr1_4:3925282-3925301 | None:intergenic | 25.0% |
| ! | CATCTGATTGTAATTGTTTA+AGG | + | chr1_4:3925405-3925424 | Msa0144430:intron | 25.0% |
| !!! | TTAAGAACTTGTTAATGATG+GGG | + | chr1_4:3925508-3925527 | Msa0144430:CDS | 25.0% |
| ! | AAAGAAAAATAAAGTCGAAC+TGG | + | chr1_4:3925984-3926003 | Msa0144430:intron | 25.0% |
| ! | ATCTTATGAAAACAACGTAT+AGG | - | chr1_4:3926020-3926039 | None:intergenic | 25.0% |
| ! | TATAAGCTGAAAACAACTTA+TGG | + | chr1_4:3926059-3926078 | Msa0144430:intron | 25.0% |
| !! | TATTTGTTGAATGGAATCAT+TGG | + | chr1_4:3926171-3926190 | Msa0144430:intron | 25.0% |
| ! | AAAATATGTAATTGCGTGTT+TGG | + | chr1_4:3926257-3926276 | Msa0144430:intron | 25.0% |
| ! | TTTCAAGAATTGTGAAAAGA+TGG | + | chr1_4:3926411-3926430 | Msa0144430:intron | 25.0% |
| ! | ATTGATAAACTCTTGATTCT+AGG | + | chr1_4:3926701-3926720 | Msa0144430:intron | 25.0% |
| ! | TTGATAAACTCTTGATTCTA+GGG | + | chr1_4:3926702-3926721 | Msa0144430:intron | 25.0% |
| ! | ACAAAACCATGTATATACTT+AGG | - | chr1_4:3926748-3926767 | None:intergenic | 25.0% |
| ! | GAACCAAAACTTAAAATTTG+AGG | - | chr1_4:3926774-3926793 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGGTTCATTTTGT+TGG | + | chr1_4:3926781-3926800 | Msa0144430:intron | 25.0% |
| ! | ATTCTCAAGTTTGAAAATCT+TGG | + | chr1_4:3926885-3926904 | Msa0144430:intron | 25.0% |
| !! | TTCAGAGGACTAAAATATTT+TGG | - | chr1_4:3927085-3927104 | None:intergenic | 25.0% |
| !!! | CGTTTTAATTAATGTTTCAG+AGG | - | chr1_4:3927100-3927119 | None:intergenic | 25.0% |
| !! | ACATAATTTTACTGTCTTCA+AGG | + | chr1_4:3927125-3927144 | Msa0144430:intron | 25.0% |
| !!! | CTGGTTTTTTTTTTTTTTCC+TGG | - | chr1_4:3927258-3927277 | None:intergenic | 25.0% |
| ! | GGAAAAAAAAAAAAAACCAG+AGG | + | chr1_4:3927258-3927277 | Msa0144430:intron | 25.0% |
| !! | TTGCTTTATTGAGATGAAAT+TGG | + | chr1_4:3927315-3927334 | Msa0144430:intron | 25.0% |
| ! | ATTTATACACCAAATGATTG+TGG | - | chr1_4:3927413-3927432 | None:intergenic | 25.0% |
| ! | ACTTAAAGAAAAGAAACCAA+GGG | - | chr1_4:3927657-3927676 | None:intergenic | 25.0% |
| ! | AAGACAAAAAACTTAAGAAC+TGG | - | chr1_4:3927753-3927772 | None:intergenic | 25.0% |
| !!! | TTAAGTTTTTTGTCTTCTCT+TGG | + | chr1_4:3927757-3927776 | Msa0144430:three_prime_UTR | 25.0% |
| ! | AATAGCATACTAGAAATGTT+AGG | + | chr1_4:3928036-3928055 | Msa0144430:three_prime_UTR | 25.0% |
| ! | ATAGCATACTAGAAATGTTA+GGG | + | chr1_4:3928037-3928056 | Msa0144430:three_prime_UTR | 25.0% |
| ! | TGAAAGAACAATAAGAATTC+GGG | - | chr1_4:3928094-3928113 | None:intergenic | 25.0% |
| ! | CTGAAAGAACAATAAGAATT+CGG | - | chr1_4:3928095-3928114 | None:intergenic | 25.0% |
| TCTTCAGCGATTCAATTAAA+TGG | + | chr1_4:3924848-3924867 | Msa0144430:exon | 30.0% | |
| TGAATTATCGGAGAAATCAA+CGG | - | chr1_4:3924916-3924935 | None:intergenic | 30.0% | |
| CTCAACTGATAATAAACGAA+AGG | - | chr1_4:3925241-3925260 | None:intergenic | 30.0% | |
| TGGAGTAGTACTTATTAGAT+CGG | - | chr1_4:3925357-3925376 | None:intergenic | 30.0% | |
| ACAAAACAACAAAAAGGAAG+CGG | - | chr1_4:3925660-3925679 | None:intergenic | 30.0% | |
| ! | TGGATGAAATTAGGTTTGTT+TGG | + | chr1_4:3925895-3925914 | Msa0144430:intron | 30.0% |
| ATACATATTAAGACCCTGTT+TGG | - | chr1_4:3926154-3926173 | None:intergenic | 30.0% | |
| !! | TTGGTTTGTTGTAACTCATT+AGG | + | chr1_4:3926222-3926241 | Msa0144430:intron | 30.0% |
| ! | CTTGCGATGTTAAATCTTTT+AGG | + | chr1_4:3926341-3926360 | Msa0144430:intron | 30.0% |
| TATCAGCCTAAGTATATACA+TGG | + | chr1_4:3926739-3926758 | Msa0144430:intron | 30.0% | |
| ! | GTTCATTTTGTTGGATAGTT+GGG | + | chr1_4:3926790-3926809 | Msa0144430:intron | 30.0% |
| CTTACTACAAGTAATTTCTG+TGG | + | chr1_4:3927360-3927379 | Msa0144430:intron | 30.0% | |
| GTGGTTCATCTATATTATTC+TGG | - | chr1_4:3927394-3927413 | None:intergenic | 30.0% | |
| ATAGATGAACCACAATCATT+TGG | + | chr1_4:3927401-3927420 | Msa0144430:intron | 30.0% | |
| AATCTACCAATTCTTCACTA+TGG | - | chr1_4:3927449-3927468 | None:intergenic | 30.0% | |
| AAATCACAAAAGGATGAAGT+AGG | - | chr1_4:3927619-3927638 | None:intergenic | 30.0% | |
| CACTTAAAGAAAAGAAACCA+AGG | - | chr1_4:3927658-3927677 | None:intergenic | 30.0% | |
| CCTGAAGATACAAAAAAGTA+AGG | - | chr1_4:3927688-3927707 | None:intergenic | 30.0% | |
| !!! | CCTTACTTTTTTGTATCTTC+AGG | + | chr1_4:3927685-3927704 | Msa0144430:intron | 30.0% |
| !!! | TACTTTTTTGTATCTTCAGG+AGG | + | chr1_4:3927688-3927707 | Msa0144430:intron | 30.0% |
| TACAAACCATGTCTAATCTT+TGG | - | chr1_4:3927891-3927910 | None:intergenic | 30.0% | |
| ACATACAAAGAGATACAAAG+AGG | - | chr1_4:3927950-3927969 | None:intergenic | 30.0% | |
| CTTTGTATCTCTTTGTATGT+AGG | + | chr1_4:3927950-3927969 | Msa0144430:three_prime_UTR | 30.0% | |
| TACTGCAAATCTGATGTAAA+AGG | + | chr1_4:3928012-3928031 | Msa0144430:three_prime_UTR | 30.0% | |
| TAGCATACTAGAAATGTTAG+GGG | + | chr1_4:3928038-3928057 | Msa0144430:three_prime_UTR | 30.0% | |
| !!! | AGGAGAATTTTTTTAGCAGT+GGG | + | chr1_4:3928061-3928080 | Msa0144430:three_prime_UTR | 30.0% |
| TGAAGCAGGTATACAAAATA+TGG | + | chr1_4:3928165-3928184 | Msa0144430:three_prime_UTR | 30.0% | |
| AGAATGAGTGAAGAGAAGAA+GGG | - | chr1_4:3924831-3924850 | None:intergenic | 35.0% | |
| AAGAATGAGTGAAGAGAAGA+AGG | - | chr1_4:3924832-3924851 | None:intergenic | 35.0% | |
| ATCGCGAGAAGTTGAATTAT+CGG | - | chr1_4:3924928-3924947 | None:intergenic | 35.0% | |
| ! | ATCTTTCTTTTGGCGACTAA+GGG | - | chr1_4:3925003-3925022 | None:intergenic | 35.0% |
| ! | TGGATTCAGCATCTTTCTTT+TGG | - | chr1_4:3925013-3925032 | None:intergenic | 35.0% |
| AGAAAGATGCTGAATCCAAT+TGG | + | chr1_4:3925015-3925034 | Msa0144430:CDS | 35.0% | |
| TGAATCCAATTGGAAATCTC+AGG | + | chr1_4:3925025-3925044 | Msa0144430:CDS | 35.0% | |
| ACTGATAATAAACGAAAGGG+AGG | - | chr1_4:3925237-3925256 | None:intergenic | 35.0% | |
| ATTGTTGGAAACAGAAAGCT+TGG | + | chr1_4:3925466-3925485 | Msa0144430:intron | 35.0% | |
| TTGTTGGAAACAGAAAGCTT+GGG | + | chr1_4:3925467-3925486 | Msa0144430:intron | 35.0% | |
| ! | TAATGATGGGGTTTATGATG+TGG | + | chr1_4:3925520-3925539 | Msa0144430:CDS | 35.0% |
| ACTGTTCACTTGTTTAGCAT+CGG | + | chr1_4:3925555-3925574 | Msa0144430:CDS | 35.0% | |
| !! | ACTTTTTCCAACACTCTGTA+AGG | - | chr1_4:3925616-3925635 | None:intergenic | 35.0% |
| TTGAATGGAGAGATTCAGTA+AGG | - | chr1_4:3925785-3925804 | None:intergenic | 35.0% | |
| CTTGATGTCTATAGATAACG+AGG | + | chr1_4:3925856-3925875 | Msa0144430:intron | 35.0% | |
| AAGATATCCTAGTGAGCTTA+TGG | + | chr1_4:3926035-3926054 | Msa0144430:intron | 35.0% | |
| CTTATATCCATAAGCTCACT+AGG | - | chr1_4:3926045-3926064 | None:intergenic | 35.0% | |
| ! | GTCAGTCTCATAATTGCTTT+TGG | + | chr1_4:3926102-3926121 | Msa0144430:intron | 35.0% |
| TCAAATAAGTCGATCCAAAC+AGG | + | chr1_4:3926137-3926156 | Msa0144430:intron | 35.0% | |
| CAAATAAGTCGATCCAAACA+GGG | + | chr1_4:3926138-3926157 | Msa0144430:intron | 35.0% | |
| AACCAAAAGAGAAGAGAACT+GGG | - | chr1_4:3926208-3926227 | None:intergenic | 35.0% | |
| AAACCAAAAGAGAAGAGAAC+TGG | - | chr1_4:3926209-3926228 | None:intergenic | 35.0% | |
| !!! | TCTTTTAGGACCTTTGCAAT+TGG | + | chr1_4:3926355-3926374 | Msa0144430:intron | 35.0% |
| ACCTTACAAAGATGCTAAAG+TGG | + | chr1_4:3926502-3926521 | Msa0144430:CDS | 35.0% | |
| TCCACTTTAGCATCTTTGTA+AGG | - | chr1_4:3926506-3926525 | None:intergenic | 35.0% | |
| GTATTCATCGCCCTTAATTT+GGG | + | chr1_4:3926545-3926564 | Msa0144430:CDS | 35.0% | |
| TAACATGCCTCCCAAATTAA+GGG | - | chr1_4:3926558-3926577 | None:intergenic | 35.0% | |
| ! | GGTTCATTTTGTTGGATAGT+TGG | + | chr1_4:3926789-3926808 | Msa0144430:intron | 35.0% |
| AGGCAGTAACATGAATAACA+GGG | - | chr1_4:3926935-3926954 | None:intergenic | 35.0% | |
| ! | CTTCAAGGTATTATGACAAG+AGG | + | chr1_4:3927140-3927159 | Msa0144430:intron | 35.0% |
| TAACATACAATGCTATGGGT+AGG | - | chr1_4:3927204-3927223 | None:intergenic | 35.0% | |
| CATATGCCATAGTGAAGAAT+TGG | + | chr1_4:3927440-3927459 | Msa0144430:intron | 35.0% | |
| !!! | TTTTTTGTATCTTCAGGAGG+TGG | + | chr1_4:3927691-3927710 | Msa0144430:intron | 35.0% |
| !!! | AGTTTTTTGTCTTCTCTTGG+AGG | + | chr1_4:3927760-3927779 | Msa0144430:three_prime_UTR | 35.0% |
| TCTTCTCTTGGAGGAATTTA+AGG | + | chr1_4:3927769-3927788 | Msa0144430:three_prime_UTR | 35.0% | |
| CTTGGAGGAATTTAAGGATT+TGG | + | chr1_4:3927775-3927794 | Msa0144430:three_prime_UTR | 35.0% | |
| GTACTGTTAGCATGTTGTAA+TGG | + | chr1_4:3927797-3927816 | Msa0144430:three_prime_UTR | 35.0% | |
| TGGTCACAAATGATCTCATT+AGG | + | chr1_4:3927817-3927836 | Msa0144430:three_prime_UTR | 35.0% | |
| !!! | GAGGAGAATTTTTTTAGCAG+TGG | + | chr1_4:3928060-3928079 | Msa0144430:three_prime_UTR | 35.0% |
| !!! | GGAGAATTTTTTTAGCAGTG+GGG | + | chr1_4:3928062-3928081 | Msa0144430:three_prime_UTR | 35.0% |
| TTGTATACCTGCTTCACAAT+GGG | - | chr1_4:3928161-3928180 | None:intergenic | 35.0% | |
| TTTGTATACCTGCTTCACAA+TGG | - | chr1_4:3928162-3928181 | None:intergenic | 35.0% | |
| ! | GATAAAGGAAAGGGTGTGAT+GGG | + | chr1_4:3924870-3924889 | Msa0144430:CDS | 40.0% |
| ! | CATCTTTCTTTTGGCGACTA+AGG | - | chr1_4:3925004-3925023 | None:intergenic | 40.0% |
| GCATACCTGAGATTTCCAAT+TGG | - | chr1_4:3925033-3925052 | None:intergenic | 40.0% | |
| ATCAGTTGAGATGTGAGATG+TGG | + | chr1_4:3925251-3925270 | Msa0144430:intron | 40.0% | |
| TCAGTTGAGATGTGAGATGT+GGG | + | chr1_4:3925252-3925271 | Msa0144430:intron | 40.0% | |
| ! | ACACTCTGTAAGGCACTTAT+GGG | - | chr1_4:3925606-3925625 | None:intergenic | 40.0% |
| ! | AACACTCTGTAAGGCACTTA+TGG | - | chr1_4:3925607-3925626 | None:intergenic | 40.0% |
| ATAAGTGCCTTACAGAGTGT+TGG | + | chr1_4:3925606-3925625 | Msa0144430:CDS | 40.0% | |
| ! | ATCCCAGTTCTCTTCTCTTT+TGG | + | chr1_4:3926203-3926222 | Msa0144430:intron | 40.0% |
| ATCCACAGTTCCAATTGCAA+AGG | - | chr1_4:3926368-3926387 | None:intergenic | 40.0% | |
| ATGCTAAAGTGGAGCTTCTT+GGG | + | chr1_4:3926513-3926532 | Msa0144430:CDS | 40.0% | |
| GGTATTCATCGCCCTTAATT+TGG | + | chr1_4:3926544-3926563 | Msa0144430:CDS | 40.0% | |
| GTAACATGCCTCCCAAATTA+AGG | - | chr1_4:3926559-3926578 | None:intergenic | 40.0% | |
| ! | AATTTGGGAGGCATGTTACT+AGG | + | chr1_4:3926560-3926579 | Msa0144430:CDS | 40.0% |
| CATGTTACTAGGTGTTTGGA+AGG | + | chr1_4:3926571-3926590 | Msa0144430:CDS | 40.0% | |
| AGGCTGATAAATTCACTGCT+AGG | - | chr1_4:3926728-3926747 | None:intergenic | 40.0% | |
| GAGGCAGTAACATGAATAAC+AGG | - | chr1_4:3926936-3926955 | None:intergenic | 40.0% | |
| AATGAATTGAGCTGCAGAAG+AGG | - | chr1_4:3926955-3926974 | None:intergenic | 40.0% | |
| TCTTCTGCAGCTCAATTCAT+TGG | + | chr1_4:3926954-3926973 | Msa0144430:intron | 40.0% | |
| CTTCTGCAGCTCAATTCATT+GGG | + | chr1_4:3926955-3926974 | Msa0144430:intron | 40.0% | |
| AAAGAAAATCCAACCTGAGC+AGG | - | chr1_4:3927024-3927043 | None:intergenic | 40.0% | |
| AAGCATGTAATCATTGCCTC+TGG | - | chr1_4:3927277-3927296 | None:intergenic | 40.0% | |
| CAGCTCATGGAAATCACAAA+AGG | - | chr1_4:3927629-3927648 | None:intergenic | 40.0% | |
| ! | CTTAAGAACTGGAGCATCAA+CGG | - | chr1_4:3927742-3927761 | None:intergenic | 40.0% |
| ! | TCTTTGGTGACTGCAAGTAT+TGG | - | chr1_4:3927875-3927894 | None:intergenic | 40.0% |
| CAGTCACCAAAGATTAGACA+TGG | + | chr1_4:3927882-3927901 | Msa0144430:three_prime_UTR | 40.0% | |
| CATACTAGAAATGTTAGGGG+AGG | + | chr1_4:3928041-3928060 | Msa0144430:three_prime_UTR | 40.0% | |
| ! | GGATAAAGGAAAGGGTGTGA+TGG | + | chr1_4:3924869-3924888 | Msa0144430:CDS | 45.0% |
| GGTAGAATCGTCTTGATCGA+GGG | - | chr1_4:3924982-3925001 | None:intergenic | 45.0% | |
| CTCAACTCATAGATGCCGAA+CGG | + | chr1_4:3925321-3925340 | Msa0144430:intron | 45.0% | |
| TCAACTCATAGATGCCGAAC+GGG | + | chr1_4:3925322-3925341 | Msa0144430:intron | 45.0% | |
| ATCGGTCAATCATTCCCGTT+CGG | - | chr1_4:3925339-3925358 | None:intergenic | 45.0% | |
| GATGGGGTTTATGATGTGGA+TGG | + | chr1_4:3925524-3925543 | Msa0144430:CDS | 45.0% | |
| GTATCACCTTCTCAGCTCTT+TGG | + | chr1_4:3925577-3925596 | Msa0144430:CDS | 45.0% | |
| CTAGGTGTGTGAGTTTCAAG+TGG | - | chr1_4:3925705-3925724 | None:intergenic | 45.0% | |
| CACTTGAAACTCACACACCT+AGG | + | chr1_4:3925703-3925722 | Msa0144430:intron | 45.0% | |
| ATCTTCACCTGAGATCTCCT+AGG | - | chr1_4:3925723-3925742 | None:intergenic | 45.0% | |
| GACCTTTGCAATTGGAACTG+TGG | + | chr1_4:3926363-3926382 | Msa0144430:intron | 45.0% | |
| GATGCTAAAGTGGAGCTTCT+TGG | + | chr1_4:3926512-3926531 | Msa0144430:CDS | 45.0% | |
| AGGGCGATGAATACCAACTT+AGG | - | chr1_4:3926539-3926558 | None:intergenic | 45.0% | |
| ! | TTCATCGCCCTTAATTTGGG+AGG | + | chr1_4:3926548-3926567 | Msa0144430:CDS | 45.0% |
| GAGGCATGTTACTAGGTGTT+TGG | + | chr1_4:3926567-3926586 | Msa0144430:CDS | 45.0% | |
| GCAACAATATCTGTAGACCC+AGG | + | chr1_4:3927237-3927256 | Msa0144430:intron | 45.0% | |
| CTTCACAATGGGAAGGTTAC+AGG | - | chr1_4:3928150-3928169 | None:intergenic | 45.0% | |
| TAACCTTCCCATTGTGAAGC+AGG | + | chr1_4:3928151-3928170 | Msa0144430:three_prime_UTR | 45.0% | |
| ATACCTGCTTCACAATGGGA+AGG | - | chr1_4:3928157-3928176 | None:intergenic | 45.0% | |
| ! | AAGGGTGTGATGGGATCTTC+TGG | + | chr1_4:3924879-3924898 | Msa0144430:CDS | 50.0% |
| TGGGATCTTCTGGACGAAGA+TGG | + | chr1_4:3924889-3924908 | Msa0144430:CDS | 50.0% | |
| GGGATCTTCTGGACGAAGAT+GGG | + | chr1_4:3924890-3924909 | Msa0144430:CDS | 50.0% | |
| CGCGATATTATCGATCCTCC+CGG | + | chr1_4:3924942-3924961 | Msa0144430:CDS | 50.0% | |
| GGGTAGAATCGTCTTGATCG+AGG | - | chr1_4:3924983-3925002 | None:intergenic | 50.0% | |
| GAAAGCTTGGGAAGTTGCAC+AGG | + | chr1_4:3925479-3925498 | Msa0144430:intron | 50.0% | |
| GGGTTTATGATGTGGATGGC+TGG | + | chr1_4:3925528-3925547 | Msa0144430:CDS | 50.0% | |
| TCACACACCTAGGAGATCTC+AGG | + | chr1_4:3925713-3925732 | Msa0144430:intron | 50.0% | |
| TTCCTACCCACACATCAGAC+TGG | + | chr1_4:3926983-3927002 | Msa0144430:CDS | 50.0% | |
| TCCTACCCACACATCAGACT+GGG | + | chr1_4:3926984-3927003 | Msa0144430:CDS | 50.0% | |
| TGACACCCAGTCTGATGTGT+GGG | - | chr1_4:3926992-3927011 | None:intergenic | 50.0% | |
| ATGACACCCAGTCTGATGTG+TGG | - | chr1_4:3926993-3927012 | None:intergenic | 50.0% | |
| GGGTTGCCAAAGAGCTGAGA+AGG | - | chr1_4:3925586-3925605 | None:intergenic | 55.0% | |
| GGAGCTTCTTGGGCCTAAGT+TGG | + | chr1_4:3926523-3926542 | Msa0144430:CDS | 55.0% | |
| ACCCAGTCTGATGTGTGGGT+AGG | - | chr1_4:3926988-3927007 | None:intergenic | 55.0% | |
| GTCATCCTTAGCACCTGCTC+AGG | + | chr1_4:3927008-3927027 | Msa0144430:CDS | 55.0% | |
| TCCTTAGCACCTGCTCAGGT+TGG | + | chr1_4:3927012-3927031 | Msa0144430:intron | 55.0% | |
| TCCAACCTGAGCAGGTGCTA+AGG | - | chr1_4:3927016-3927035 | None:intergenic | 55.0% | |
| TCCATGAGCTGCAACACCCT+TGG | + | chr1_4:3927638-3927657 | Msa0144430:intron | 55.0% | |
| !! | ACCAAGGGTGTTGCAGCTCA+TGG | - | chr1_4:3927642-3927661 | None:intergenic | 55.0% |
| ! | CTTCAGGAGGTGGAGTACTC+AGG | + | chr1_4:3927701-3927720 | Msa0144430:intron | 55.0% |
| ! | AGGAGGTGGAGTACTCAGGT+GGG | + | chr1_4:3927705-3927724 | Msa0144430:intron | 55.0% |
| ! | AGGGAAGCGCGTGAGAAACC+GGG | - | chr1_4:3924963-3924982 | None:intergenic | 60.0% |
| ! | GAGGGAAGCGCGTGAGAAAC+CGG | - | chr1_4:3924964-3924983 | None:intergenic | 60.0% |
| ! | CAGGAGGTGGAGTACTCAGG+TGG | + | chr1_4:3927704-3927723 | Msa0144430:intron | 60.0% |
| ! | GGAGGTGGAGTACTCAGGTG+GGG | + | chr1_4:3927706-3927725 | Msa0144430:intron | 60.0% |
| ! | GAGGTGGAGTACTCAGGTGG+GGG | + | chr1_4:3927707-3927726 | Msa0144430:CDS | 60.0% |
| GAAGCGCGTGAGAAACCGGG+AGG | - | chr1_4:3924960-3924979 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 3924766 | 3928192 | 3924766 | ID=Msa0144430;Name=Msa0144430 |
| chr1_4 | mRNA | 3924766 | 3928192 | 3924766 | ID=Msa0144430-mRNA-1;Parent=Msa0144430;Name=Msa0144430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=101|1|1|1|1|1|5|447|178 |
| chr1_4 | exon | 3924766 | 3925046 | 3924766 | ID=Msa0144430-mRNA-1:exon:1619;Parent=Msa0144430-mRNA-1 |
| chr1_4 | exon | 3925480 | 3925633 | 3925480 | ID=Msa0144430-mRNA-1:exon:1620;Parent=Msa0144430-mRNA-1 |
| chr1_4 | exon | 3926495 | 3926592 | 3926495 | ID=Msa0144430-mRNA-1:exon:1621;Parent=Msa0144430-mRNA-1 |
| chr1_4 | exon | 3926964 | 3927029 | 3926964 | ID=Msa0144430-mRNA-1:exon:1622;Parent=Msa0144430-mRNA-1 |
| chr1_4 | exon | 3927707 | 3928192 | 3927707 | ID=Msa0144430-mRNA-1:exon:1623;Parent=Msa0144430-mRNA-1 |
| chr1_4 | five_prime_UTR | 3924766 | 3924866 | 3924766 | ID=Msa0144430-mRNA-1:five_prime_utr;Parent=Msa0144430-mRNA-1 |
| chr1_4 | CDS | 3924867 | 3925046 | 3924867 | ID=Msa0144430-mRNA-1:cds;Parent=Msa0144430-mRNA-1 |
| chr1_4 | CDS | 3925480 | 3925633 | 3925480 | ID=Msa0144430-mRNA-1:cds;Parent=Msa0144430-mRNA-1 |
| chr1_4 | CDS | 3926495 | 3926592 | 3926495 | ID=Msa0144430-mRNA-1:cds;Parent=Msa0144430-mRNA-1 |
| chr1_4 | CDS | 3926964 | 3927029 | 3926964 | ID=Msa0144430-mRNA-1:cds;Parent=Msa0144430-mRNA-1 |
| chr1_4 | CDS | 3927707 | 3927745 | 3927707 | ID=Msa0144430-mRNA-1:cds;Parent=Msa0144430-mRNA-1 |
| chr1_4 | three_prime_UTR | 3927746 | 3928192 | 3927746 | ID=Msa0144430-mRNA-1:three_prime_utr;Parent=Msa0144430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
