AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010490 MtrunA17_Chr1g0159481 99.535 215 1 0 1 215 1 215 1.23e-160 442
Msa0010490 MtrunA17_Chr8g0384311 85.990 207 28 1 7 213 3 208 2.77e-133 372
Msa0010490 MtrunA17_Chr3g0130271 83.092 207 33 2 8 213 3 208 4.74e-126 354
Msa0010490 MtrunA17_Chr7g0265001 67.327 202 65 1 14 214 13 214 9.48e-104 298
Msa0010490 MtrunA17_Chr1g0180291 66.500 200 67 0 14 213 11 210 3.10e-102 294
Msa0010490 MtrunA17_Chr1g0197331 61.215 214 79 2 3 214 1 212 1.56e-91 267
Msa0010490 MtrunA17_Chr7g0250531 57.647 170 69 3 13 181 4 171 1.34e-58 183
Msa0010490 MtrunA17_Chr8g0335471 49.754 203 97 4 13 214 4 202 1.12e-57 181
Msa0010490 MtrunA17_Chr2g0276931 49.020 204 97 5 13 214 5 203 2.72e-57 180
Msa0010490 MtrunA17_Chr4g0055651 55.357 168 72 3 13 179 4 169 4.55e-57 179
Msa0010490 MtrunA17_Chr1g0182321 44.545 220 109 7 3 214 1 215 9.84e-55 174
Msa0010490 MtrunA17_Chr1g0182301 44.091 220 110 7 3 214 1 215 3.25e-54 172
Msa0010490 MtrunA17_Chr1g0212521 45.714 210 101 7 13 214 11 215 3.09e-53 170
Msa0010490 MtrunA17_Chr4g0030911 45.673 208 103 7 13 214 11 214 1.53e-52 168
Msa0010490 MtrunA17_Chr7g0263071 49.438 178 82 5 13 184 11 186 6.43e-52 166
Msa0010490 MtrunA17_Chr2g0327911 43.137 204 113 3 13 214 11 213 2.10e-51 165
Msa0010490 MtrunA17_Chr6g0458081 49.405 168 82 3 14 180 3 168 9.73e-51 163
Msa0010490 MtrunA17_Chr2g0290891 49.375 160 78 3 14 172 3 160 9.78e-49 158
Msa0010490 MtrunA17_Chr6g0482721 49.708 171 83 3 15 184 10 178 1.77e-48 158
Msa0010490 MtrunA17_Chr8g0349681 42.157 204 111 4 16 214 383 584 7.42e-48 165
Msa0010490 MtrunA17_Chr8g0349681 44.134 179 91 4 1 172 153 329 2.68e-42 150
Msa0010490 MtrunA17_Chr8g0349681 44.099 161 87 3 16 175 12 170 1.18e-40 145
Msa0010490 MtrunA17_Chr2g0325091 44.976 209 106 6 13 214 7 213 1.27e-47 155
Msa0010490 MtrunA17_Chr8g0349711 47.468 158 80 3 16 172 5 160 1.12e-46 153
Msa0010490 MtrunA17_Chr2g0283131 40.092 217 106 6 13 214 9 216 1.36e-46 153
Msa0010490 MtrunA17_Chr4g0046261 42.932 191 95 4 13 191 9 197 1.74e-46 153
Msa0010490 MtrunA17_Chr2g0319951 48.214 168 84 3 13 179 9 174 3.66e-46 152
Msa0010490 MtrunA17_Chr8g0346421 46.429 168 87 3 13 179 22 187 5.93e-46 152
Msa0010490 MtrunA17_Chr2g0276941 40.000 210 115 5 13 213 11 218 1.27e-45 150
Msa0010490 MtrunA17_Chr4g0040781 42.932 191 95 4 13 191 9 197 1.63e-45 150
Msa0010490 MtrunA17_Chr7g0275991 42.051 195 110 3 13 206 16 208 2.63e-45 150
Msa0010490 MtrunA17_Chr3g0112681 42.077 183 100 4 13 191 8 188 2.76e-45 149
Msa0010490 MtrunA17_Chr2g0315551 45.833 168 88 3 13 179 9 174 4.67e-45 149
Msa0010490 MtrunA17_Chr8g0381841 38.679 212 116 5 14 213 14 223 5.43e-45 149
Msa0010490 MtrunA17_Chr7g0234201 42.202 218 93 7 16 214 12 215 1.15e-44 148
Msa0010490 MtrunA17_Chr4g0032201 40.761 184 103 4 13 192 8 189 1.24e-44 148
Msa0010490 MtrunA17_Chr3g0123821 37.264 212 120 5 13 213 12 221 2.15e-44 147
Msa0010490 MtrunA17_Chr8g0351861 41.204 216 109 6 15 214 14 227 1.24e-43 146
Msa0010490 MtrunA17_Chr1g0189361 41.026 195 103 4 15 208 12 195 1.60e-43 145
Msa0010490 MtrunA17_Chr8g0392931 47.059 170 87 3 13 181 10 177 2.00e-42 142
Msa0010490 MtrunA17_Chr7g0231131 42.262 168 94 3 13 179 11 176 5.47e-42 141
Msa0010490 MtrunA17_Chr1g0174281 37.037 216 119 7 13 214 11 223 7.49e-41 138
Msa0010490 MtrunA17_Chr7g0214241 42.353 170 95 3 16 184 14 181 1.44e-38 132
Msa0010490 MtrunA17_Chr5g0433561 37.056 197 115 6 19 214 12 200 3.49e-36 125
Msa0010490 MtrunA17_Chr1g0199331 40.237 169 96 5 19 185 33 198 2.83e-35 123
Msa0010490 MtrunA17_Chr3g0109721 35.533 197 118 6 19 214 12 200 4.67e-35 123
Msa0010490 MtrunA17_Chr8g0390561 38.272 162 97 3 19 179 11 170 6.72e-34 120
Msa0010490 MtrunA17_Chr4g0055081 38.994 159 94 3 18 175 10 166 5.37e-33 118
Msa0010490 MtrunA17_Chr8g0382221 37.736 159 96 3 18 175 10 166 2.97e-32 116
Msa0010490 MtrunA17_Chr5g0400131 38.365 159 95 3 18 175 10 166 3.84e-32 115
Msa0010490 MtrunA17_Chr3g0123971 37.278 169 103 3 18 185 10 176 4.21e-32 115
Msa0010490 MtrunA17_Chr4g0034871 36.842 171 100 5 17 180 8 177 6.05e-29 107
Msa0010490 MtrunA17_Chr8g0383261 39.444 180 94 7 1 172 1 173 7.80e-29 107
Msa0010490 MtrunA17_Chr2g0331691 34.653 202 106 6 17 211 10 192 7.00e-28 104
Msa0010490 MtrunA17_Chr4g0004661 33.663 202 108 6 17 211 64 246 7.95e-27 103
Msa0010490 MtrunA17_Chr1g0201121 37.423 163 94 5 17 172 8 169 1.54e-26 101
Msa0010490 MtrunA17_Chr6g0466301 38.650 163 92 6 17 172 8 169 2.11e-26 100
Msa0010490 MtrunA17_Chr6g0465491 38.650 163 92 6 17 172 8 169 2.11e-26 100
Msa0010490 MtrunA17_Chr3g0138121 36.813 182 106 7 7 185 2 177 1.57e-25 99.0
Msa0010490 MtrunA17_Chr3g0138101 36.813 182 106 7 7 185 2 177 1.79e-25 99.0
Msa0010490 MtrunA17_Chr3g0138111 36.813 182 106 7 7 185 2 177 2.03e-25 99.0
Msa0010490 MtrunA17_Chr2g0325101 31.250 176 106 5 17 180 6 178 1.79e-23 93.2
Msa0010490 MtrunA17_Chr3g0117931 29.064 203 126 6 8 198 2 198 5.02e-23 92.4
Msa0010490 MtrunA17_Chr6g0486041 30.726 179 109 5 17 183 6 181 5.94e-23 92.0
Msa0010490 MtrunA17_Chr4g0037021 29.609 179 111 5 17 183 6 181 2.74e-22 90.1
Msa0010490 MtrunA17_Chr8g0371501 31.250 176 106 5 17 180 6 178 3.19e-21 87.0
Msa0010490 MtrunA17_Chr5g0405791 30.682 176 107 5 17 180 6 178 7.95e-21 86.3
Msa0010490 MtrunA17_Chr4g0046211 32.258 124 80 3 17 139 6 126 1.97e-17 75.9
Msa0010490 MtrunA17_Chr6g0466431 36.000 100 53 3 17 115 8 97 2.13e-14 66.6
Msa0010490 MtrunA17_Chr6g0465611 36.000 100 53 3 17 115 8 97 2.13e-14 66.6
Msa0010490 MtrunA17_Chr6g0466161 36.641 131 76 5 48 172 22 151 3.93e-14 68.6
Msa0010490 MtrunA17_Chr6g0465471 36.641 131 76 5 48 172 22 151 4.31e-14 68.2
Msa0010490 MtrunA17_Chr5g0434561 31.034 174 97 9 14 176 16 177 1.75e-12 63.5
Msa0010490 MtrunA17_Chr8g0383221 30.675 163 83 6 19 153 23 183 3.62e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010490 AT1G43890.3 85.354 198 29 0 7 204 3 200 4.17e-126 355
Msa0010490 AT1G43890.1 85.354 198 29 0 7 204 3 200 4.17e-126 355
Msa0010490 AT1G43890.2 85.354 198 29 0 7 204 3 200 4.17e-126 355
Msa0010490 AT5G03530.2 66.827 208 69 0 7 214 3 210 1.93e-109 313
Msa0010490 AT5G03530.1 66.827 208 69 0 7 214 3 210 1.93e-109 313
Msa0010490 AT3G09910.3 63.462 208 70 2 7 214 3 204 2.66e-89 261
Msa0010490 AT3G09910.1 63.462 208 70 2 7 214 3 204 2.66e-89 261
Msa0010490 AT3G09910.2 63.462 208 70 2 7 214 3 204 2.66e-89 261
Msa0010490 AT3G09910.5 64.865 185 62 1 7 188 3 187 4.76e-81 240
Msa0010490 AT3G09910.4 64.865 185 62 1 7 188 3 187 4.76e-81 240
Msa0010490 AT1G02130.1 48.768 203 99 4 13 214 4 202 5.44e-57 179
Msa0010490 AT5G47200.1 48.276 203 99 5 13 214 4 201 2.67e-56 177
Msa0010490 AT4G17530.1 48.276 203 99 5 13 214 4 201 4.45e-56 177
Msa0010490 AT4G35860.1 48.925 186 88 4 14 194 3 186 5.64e-54 172
Msa0010490 AT3G53610.2 46.860 207 100 7 13 213 11 213 1.48e-53 171
Msa0010490 AT3G53610.3 46.860 207 100 7 13 213 11 213 1.48e-53 171
Msa0010490 AT3G53610.1 46.860 207 100 7 13 213 11 213 1.48e-53 171
Msa0010490 AT5G59840.1 46.377 207 101 7 13 213 11 213 3.10e-53 170
Msa0010490 AT3G09900.1 47.170 212 100 7 12 215 10 217 1.79e-52 168
Msa0010490 AT3G11730.1 45.320 203 108 3 13 214 4 204 2.06e-52 168
Msa0010490 AT5G03520.1 45.161 217 107 6 6 215 4 215 2.17e-52 168
Msa0010490 AT3G46060.2 45.894 207 102 7 13 213 11 213 5.82e-52 167
Msa0010490 AT3G46060.3 45.894 207 102 7 13 213 11 213 5.82e-52 167
Msa0010490 AT3G46060.1 45.894 207 102 7 13 213 11 213 5.82e-52 167
Msa0010490 AT4G17160.1 42.439 205 112 4 14 214 3 205 1.49e-50 163
Msa0010490 AT4G39990.1 42.105 209 109 5 15 213 15 221 5.29e-50 162
Msa0010490 AT4G17170.1 49.375 160 78 3 14 172 3 160 2.74e-49 160
Msa0010490 AT2G33870.1 41.706 211 112 5 13 214 9 217 1.37e-47 156
Msa0010490 AT5G60860.1 43.455 191 94 4 13 191 9 197 3.05e-46 152
Msa0010490 AT4G18430.1 41.429 210 113 4 13 214 9 216 3.95e-46 152
Msa0010490 AT1G18200.1 48.214 168 84 3 13 179 9 174 4.24e-46 152
Msa0010490 AT1G09630.1 40.000 210 116 4 13 214 8 215 4.45e-46 152
Msa0010490 AT1G73640.1 48.214 168 84 3 13 179 9 174 5.24e-46 152
Msa0010490 AT1G28550.1 47.024 168 86 3 13 179 9 174 5.68e-46 152
Msa0010490 AT1G16920.1 47.619 168 85 3 13 179 9 174 7.11e-46 151
Msa0010490 AT5G45750.1 47.024 168 86 3 13 179 9 174 8.45e-46 151
Msa0010490 AT3G07410.1 41.627 209 111 4 15 214 10 216 1.22e-45 151
Msa0010490 AT1G06400.1 47.619 168 85 3 13 179 9 174 1.92e-45 150
Msa0010490 AT3G15060.1 45.087 173 92 3 13 184 9 179 9.20e-45 149
Msa0010490 AT4G18800.1 41.546 207 114 4 13 214 9 213 1.11e-44 148
Msa0010490 AT2G43130.1 40.777 206 114 5 15 214 10 213 1.58e-44 148
Msa0010490 AT1G05810.1 45.029 171 91 3 15 184 10 178 1.93e-44 148
Msa0010490 AT5G47520.1 44.444 171 92 3 15 184 12 180 3.94e-44 147
Msa0010490 AT1G05810.2 45.029 171 91 3 15 184 56 224 5.43e-44 148
Msa0010490 AT5G65270.1 41.176 170 97 3 13 181 13 180 6.55e-44 147
Msa0010490 AT1G07410.1 40.217 184 104 4 13 192 8 189 1.25e-43 145
Msa0010490 AT3G46830.1 42.197 173 97 3 13 184 8 178 6.95e-43 144
Msa0010490 AT3G46830.2 42.197 173 97 3 13 184 8 178 6.95e-43 144
Msa0010490 AT3G12160.1 38.208 212 119 6 13 214 11 220 7.82e-43 144
Msa0010490 AT2G31680.1 45.783 166 87 3 15 179 10 173 9.22e-43 144
Msa0010490 AT1G01200.1 44.706 170 90 4 13 180 24 191 1.42e-42 144
Msa0010490 AT5G47960.1 36.620 213 122 6 13 214 11 221 3.53e-42 142
Msa0010490 AT5G59150.1 41.040 173 99 3 13 184 8 178 7.24e-42 141
Msa0010490 AT5G03520.2 42.373 177 91 5 45 215 34 205 1.23e-37 130
Msa0010490 AT4G39890.1 38.251 183 109 3 18 197 10 191 1.26e-37 130
Msa0010490 AT4G35860.2 50.407 123 59 2 58 180 2 122 1.79e-36 126
Msa0010490 AT3G54840.1 39.429 175 99 5 6 175 19 191 2.64e-34 121
Msa0010490 AT4G19640.1 36.041 197 117 6 19 214 12 200 2.69e-34 121
Msa0010490 AT5G45130.1 36.041 197 117 6 19 214 12 200 2.78e-34 121
Msa0010490 AT3G54840.3 40.506 158 90 4 20 175 2 157 9.97e-34 119
Msa0010490 AT5G10260.1 39.623 159 93 3 18 175 10 166 1.85e-33 119
Msa0010490 AT3G54840.2 40.764 157 89 4 19 173 35 189 4.88e-33 118
Msa0010490 AT5G45130.2 35.385 195 117 6 21 214 22 208 1.20e-32 117
Msa0010490 AT2G44610.1 38.994 159 94 3 18 175 10 166 1.49e-32 117
Msa0010490 AT2G22290.1 39.623 159 93 3 18 175 10 166 3.10e-32 116
Msa0010490 AT3G18820.1 39.024 164 92 5 17 173 8 170 3.63e-29 108
Msa0010490 AT5G64990.1 37.821 156 94 3 18 172 8 161 7.66e-29 107
Msa0010490 AT1G52280.1 35.149 202 105 6 17 211 8 190 9.59e-29 107
Msa0010490 AT4G09720.1 39.264 163 91 5 17 172 8 169 2.00e-28 106
Msa0010490 AT1G22740.1 38.037 163 93 5 17 172 8 169 3.56e-28 105
Msa0010490 AT3G16100.1 35.149 202 105 6 17 211 8 190 8.71e-28 104
Msa0010490 AT4G09720.4 38.690 168 90 6 17 172 8 174 9.82e-28 104
Msa0010490 AT1G49300.2 38.037 163 93 5 17 172 8 169 1.33e-27 104
Msa0010490 AT1G49300.1 38.037 163 93 5 17 172 8 169 1.33e-27 104
Msa0010490 AT5G39620.1 37.647 170 98 5 18 180 6 174 2.07e-27 103
Msa0010490 AT2G21880.1 37.805 164 92 6 17 172 9 170 7.83e-27 102
Msa0010490 AT4G09720.3 36.782 174 91 6 17 172 8 180 9.57e-27 102
Msa0010490 AT5G55080.1 39.024 164 92 6 18 179 14 171 2.82e-26 101
Msa0010490 AT5G64990.2 36.196 163 94 4 18 172 8 168 4.02e-26 100
Msa0010490 AT5G59150.2 38.211 123 74 2 57 179 2 122 2.36e-25 97.4
Msa0010490 AT4G19640.2 39.844 128 74 3 19 145 12 137 1.07e-24 95.1
Msa0010490 AT4G19640.3 39.098 133 78 3 19 150 12 142 1.61e-24 95.9
Msa0010490 AT2G44690.1 31.667 180 108 5 17 184 18 194 1.70e-24 96.3
Msa0010490 AT5G20010.1 35.789 190 105 8 7 185 2 185 3.64e-24 95.9
Msa0010490 AT5G55190.1 37.356 174 100 7 9 179 4 171 5.00e-24 95.5
Msa0010490 AT5G20020.1 36.932 176 102 7 7 179 2 171 7.08e-24 95.1
Msa0010490 AT4G35020.1 30.168 179 110 5 17 183 6 181 1.01e-22 91.7
Msa0010490 AT4G35020.2 30.168 179 110 5 17 183 6 181 1.01e-22 91.7
Msa0010490 AT4G35020.3 30.168 179 110 5 17 183 6 181 1.01e-22 91.7
Msa0010490 AT3G51300.1 31.034 174 105 5 19 180 8 178 1.30e-22 91.3
Msa0010490 AT3G48040.1 30.526 190 113 7 8 185 2 184 7.80e-22 89.4
Msa0010490 AT4G28950.1 29.379 177 112 5 17 183 6 179 1.00e-21 89.0
Msa0010490 AT2G17800.2 30.114 176 108 5 17 180 6 178 2.04e-21 88.2
Msa0010490 AT2G17800.1 30.114 176 108 5 17 180 6 178 2.04e-21 88.2
Msa0010490 AT4G09720.6 40.458 131 71 4 48 172 6 135 2.22e-21 87.4
Msa0010490 AT4G09720.5 40.458 131 71 4 48 172 6 135 2.22e-21 87.4
Msa0010490 AT4G09720.2 40.458 131 71 4 48 172 6 135 2.22e-21 87.4
Msa0010490 AT1G20090.1 29.545 176 109 5 17 180 5 177 2.46e-21 87.8
Msa0010490 AT1G75840.1 29.545 176 109 5 17 180 6 178 2.82e-21 87.8
Msa0010490 AT4G35950.1 29.545 176 109 5 17 180 6 178 1.09e-20 86.3
Msa0010490 AT5G62880.1 29.189 185 113 6 8 180 2 180 4.00e-20 85.1
Msa0010490 AT5G45970.1 28.488 172 108 5 17 176 6 174 6.67e-20 84.0
Msa0010490 AT3G48040.2 30.939 181 106 7 8 175 2 176 9.31e-20 83.2
Msa0010490 AT2G21880.4 38.636 132 72 5 48 172 16 145 1.46e-19 82.8
Msa0010490 AT2G21880.3 38.636 132 72 5 48 172 16 145 1.46e-19 82.8
Msa0010490 AT2G21880.2 32.927 164 92 7 17 172 9 162 1.49e-17 77.8
Msa0010490 AT5G62880.2 30.000 170 101 6 8 165 2 165 1.97e-17 77.4
Msa0010490 AT3G51290.2 29.605 152 93 4 40 180 631 779 2.31e-15 74.7
Msa0010490 AT4G35020.4 34.483 116 72 3 19 133 8 120 3.12e-15 70.5
Msa0010490 AT4G35020.5 34.483 116 72 3 19 133 8 120 3.12e-15 70.5
Msa0010490 AT5G46025.1 35.577 104 66 1 78 181 6 108 3.71e-15 69.3
Msa0010490 AT5G37680.1 29.545 176 97 9 14 176 16 177 1.22e-12 64.3
Msa0010490 AT3G49870.2 32.934 167 95 9 18 176 1 158 2.39e-12 63.2
Msa0010490 AT3G49870.1 32.749 171 98 9 14 176 16 177 3.97e-12 62.8
Msa0010490 AT5G67560.1 32.749 171 98 9 14 176 16 177 4.40e-12 62.8
Msa0010490 AT5G64813.1 28.221 163 87 6 19 153 24 184 7.61e-11 60.8
Msa0010490 AT5G64813.3 28.221 163 87 6 19 153 24 184 7.61e-11 60.8
Msa0010490 AT5G64813.2 28.221 163 87 6 19 153 24 184 7.61e-11 60.8
Msa0010490 AT3G22950.1 28.244 131 87 3 18 148 18 141 9.47e-11 59.3
Msa0010490 AT3G22950.2 28.244 131 87 3 18 148 18 141 9.47e-11 59.3

Find 61 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTATGATTGGTGATTC+TGG 0.217855 1_1:-15807826 Msa0010490:CDS
ACTGCAGAAGATCCTGAATT+TGG 0.226153 1_1:-15803829 Msa0010490:three_prime_UTR
TTACAAATCTATCTGATATA+TGG 0.238643 1_1:-15804838 Msa0010490:CDS
AGAAGTTAAAACTTGCTATA+TGG 0.282325 1_1:-15806354 Msa0010490:CDS
GAAAGGTTTCGAACACTTAC+TGG 0.285773 1_1:-15806212 Msa0010490:CDS
GTGGACTTTGCAAGGCAATA+TGG 0.296394 1_1:-15804592 Msa0010490:CDS
CTCCTGGCTGAGGGCTCATC+TGG 0.330734 1_1:-15804167 Msa0010490:CDS
AGGTGCACAAGGAATAATTA+TGG 0.331547 1_1:-15806177 Msa0010490:CDS
TGAAAGGGCTGTTACCAAAA+AGG 0.345224 1_1:-15804620 Msa0010490:CDS
AATGGATGTTTCTTCTTCTT+CGG 0.349573 1_1:-15807884 Msa0010490:CDS
GAAGTTAAAACTTGCTATAT+GGG 0.357838 1_1:-15806353 Msa0010490:CDS
GAAGATCTTTCTCCCACTAT+TGG 0.364166 1_1:-15807757 Msa0010490:intron
CGCGAAAGAAAGCCTCCTTT+TGG 0.376354 1_1:+15803736 None:intergenic
TTGTTCAAGCTTCTTATGAT+TGG 0.383844 1_1:-15807835 Msa0010490:CDS
GATTGCATCAAGATGCTTGT+TGG 0.386118 1_1:-15804782 Msa0010490:CDS
TACAAATCTATCTGATATAT+GGG 0.407172 1_1:-15804837 Msa0010490:CDS
CCACAGAAGAAACCAAATTC+AGG 0.409745 1_1:+15803817 None:intergenic
TTCTTCTCGTGCAGCTGGAC+AGG 0.417456 1_1:-15806234 Msa0010490:intron
CTTGTGTTGAATGAATTATA+TGG 0.423704 1_1:+15807970 None:intergenic
TAATGAAACAGAAAGCAAAA+TGG 0.428240 1_1:+15803768 None:intergenic
AATCGCGGTTTATTCTGAAA+TGG 0.435369 1_1:-15807902 Msa0010490:exon
GTTAAATATGTTACACTTGG+TGG 0.437372 1_1:-15806379 Msa0010490:CDS
TTTGGTTTCTTCTGTGGTTG+TGG 0.445334 1_1:-15803811 Msa0010490:three_prime_UTR
CCTGAATTTGGTTTCTTCTG+TGG 0.450279 1_1:-15803817 Msa0010490:three_prime_UTR
TACACCAAGCCTCCTGGCTG+AGG 0.454373 1_1:-15804177 Msa0010490:CDS
ATGATTGGTGATTCTGGTGT+TGG 0.454677 1_1:-15807820 Msa0010490:CDS
TCTGCAGTGCAGAGGGGAAT+GGG 0.455809 1_1:+15803844 None:intergenic
TGGACTTTGCAAGGCAATAT+GGG 0.468552 1_1:-15804591 Msa0010490:CDS
GAGCCCTCAGCCAGGAGGCT+TGG 0.469370 1_1:+15804173 None:intergenic
GGTGCACAAGGAATAATTAT+GGG 0.473429 1_1:-15806176 Msa0010490:intron
CTTACTGGTTCATATTATAG+AGG 0.473869 1_1:-15806197 Msa0010490:CDS
TTGCACTGCATTCAGTATAG+AGG 0.489926 1_1:+15804566 None:intergenic
TTCTGCAGTGCAGAGGGGAA+TGG 0.490445 1_1:+15803843 None:intergenic
TTTGGATACACCAAGCCTCC+TGG 0.503438 1_1:-15804183 Msa0010490:CDS
ATTCACATCATACTGAAAAG+TGG 0.524648 1_1:+15804042 None:intergenic
TATGAAATCTGTCTCTACAT+AGG 0.529703 1_1:-15803907 Msa0010490:three_prime_UTR
CACCTAGCAGCTGTTGCGCA+TGG 0.530235 1_1:-15804097 Msa0010490:CDS
TCATTATTATGTGAACCAAA+AGG 0.531815 1_1:-15803751 Msa0010490:three_prime_UTR
AGGATCTTCTGCAGTGCAGA+GGG 0.539344 1_1:+15803837 None:intergenic
CACCAGATGAGCCCTCAGCC+AGG 0.548724 1_1:+15804165 None:intergenic
AGGAAGCGGTGGACTTTGCA+AGG 0.556741 1_1:-15804600 Msa0010490:CDS
AAAGTTAAATATGTTACACT+TGG 0.573517 1_1:-15806382 Msa0010490:CDS
CACCATGCGCAACAGCTGCT+AGG 0.581361 1_1:+15804095 None:intergenic
GGTGATGCATCAGACTCTTG+CGG 0.604993 1_1:+15804116 None:intergenic
CAGGATCTTCTGCAGTGCAG+AGG 0.614315 1_1:+15803836 None:intergenic
ACACCAAGCCTCCTGGCTGA+GGG 0.615958 1_1:-15804176 Msa0010490:CDS
TTTGTGAACAAACCAATAGT+GGG 0.616040 1_1:+15807745 None:intergenic
CTCGTGCAGCTGGACAGGAA+AGG 0.620766 1_1:-15806229 Msa0010490:intron
AGCAAACCACACTGTAGACA+AGG 0.624336 1_1:+15803632 None:intergenic
AAACTTGCTATATGGGACAC+GGG 0.627855 1_1:-15806346 Msa0010490:intron
CACATCATACTGAAAAGTGG+AGG 0.630350 1_1:+15804045 None:intergenic
TTATTATGTGAACCAAAAGG+AGG 0.632285 1_1:-15803748 Msa0010490:three_prime_UTR
AAAACTTGCTATATGGGACA+CGG 0.637080 1_1:-15806347 Msa0010490:CDS
ACATCATACTGAAAAGTGGA+GGG 0.649542 1_1:+15804046 None:intergenic
TCATATTATAGAGGTGCACA+AGG 0.659834 1_1:-15806188 Msa0010490:CDS
TGTTGGAAACAAAGTTGACA+AGG 0.666842 1_1:-15804765 Msa0010490:intron
CAGATGAGCCCTCAGCCAGG+AGG 0.684281 1_1:+15804168 None:intergenic
TCGAAGCTTAAACTCAATCG+CGG 0.689908 1_1:-15807917 Msa0010490:five_prime_UTR
AAGATGCCTTGTCTACAGTG+TGG 0.720385 1_1:-15803638 None:intergenic
GAACAAGTAATCGAATTCAG+CGG 0.723999 1_1:+15807852 None:intergenic
GGATCTTCTGCAGTGCAGAG+GGG 0.729498 1_1:+15803838 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACGATAATAAAATAAAAA+AGG - chr1_1:15807322-15807341 Msa0010490:intron 10.0%
!! TAAACAAATTTATATTGCAT+TGG - chr1_1:15805079-15805098 Msa0010490:intron 15.0%
!! AAACAAATTTATATTGCATT+GGG - chr1_1:15805080-15805099 Msa0010490:intron 15.0%
!!! CATATCATTATTATTTTAGA+AGG + chr1_1:15805802-15805821 None:intergenic 15.0%
!!! AGTATTTCTTTTTATAAGAT+AGG - chr1_1:15806232-15806251 Msa0010490:intron 15.0%
!!! GTATTTCTTTTTATAAGATA+GGG - chr1_1:15806233-15806252 Msa0010490:intron 15.0%
!!! TTATTATTTTCATGTTTTTG+AGG + chr1_1:15807182-15807201 None:intergenic 15.0%
!!! TTTCTTTTGTTCATGTATTT+TGG - chr1_1:15803960-15803979 Msa0010490:three_prime_UTR 20.0%
!!! GATTTTTGTCAATTTATGTT+TGG - chr1_1:15804172-15804191 Msa0010490:CDS 20.0%
!! AATAGTAAACAAGCTAAAAA+AGG + chr1_1:15804903-15804922 None:intergenic 20.0%
!! TACGTCTATATTAACATTAT+AGG + chr1_1:15805061-15805080 None:intergenic 20.0%
!! AACAAATTTATATTGCATTG+GGG - chr1_1:15805081-15805100 Msa0010490:intron 20.0%
!! AAAGTTAAATATGTTACACT+TGG - chr1_1:15805269-15805288 Msa0010490:intron 20.0%
!!! TTGAAATTCTGTTATTTTCT+TGG - chr1_1:15805363-15805382 Msa0010490:intron 20.0%
!!! TGAAATTCTGTTATTTTCTT+GGG - chr1_1:15805364-15805383 Msa0010490:intron 20.0%
!! AAAATTGTACATCATATTCA+TGG + chr1_1:15805558-15805577 None:intergenic 20.0%
!!! TAAAAGCATTCAAACAAATT+AGG + chr1_1:15805583-15805602 None:intergenic 20.0%
!!! AACTATGAAAGTATAATAAC+AGG + chr1_1:15805707-15805726 None:intergenic 20.0%
!!! AGTGTATTACTTTTTTCAAA+AGG - chr1_1:15805881-15805900 Msa0010490:intron 20.0%
!! TCAATAACATTGGTATTATA+GGG + chr1_1:15806045-15806064 None:intergenic 20.0%
!! ATCAATAACATTGGTATTAT+AGG + chr1_1:15806046-15806065 None:intergenic 20.0%
!! TATAATACCAATGTTATTGA+TGG - chr1_1:15806045-15806064 Msa0010490:intron 20.0%
!! CATATATGGATATAAAGATT+GGG - chr1_1:15806273-15806292 Msa0010490:intron 20.0%
!!! TTATTGTATCTTTTGCTTTT+TGG - chr1_1:15806568-15806587 Msa0010490:intron 20.0%
!! TTACAAATCTATCTGATATA+TGG - chr1_1:15806813-15806832 Msa0010490:intron 20.0%
!! TACAAATCTATCTGATATAT+GGG - chr1_1:15806814-15806833 Msa0010490:intron 20.0%
!!! GACTAACGAAATTAATTTTT+TGG + chr1_1:15807665-15807684 None:intergenic 20.0%
! ATATGGAAAGTTGAAAAAGA+AGG + chr1_1:15803667-15803686 None:intergenic 25.0%
! CTTGTGTTGAATGAATTATA+TGG + chr1_1:15803684-15803703 None:intergenic 25.0%
! CATAATGAAAGTGAAAACAA+GGG + chr1_1:15803933-15803952 None:intergenic 25.0%
! ACATAATGAAAGTGAAAACA+AGG + chr1_1:15803934-15803953 None:intergenic 25.0%
! AGAGTCAAAATCAAATTTAG+GGG + chr1_1:15804354-15804373 None:intergenic 25.0%
! CAGAGTCAAAATCAAATTTA+GGG + chr1_1:15804355-15804374 None:intergenic 25.0%
! TCAGAGTCAAAATCAAATTT+AGG + chr1_1:15804356-15804375 None:intergenic 25.0%
!! TTATTAGCTTCTTGAAATCA+CGG + chr1_1:15804571-15804590 None:intergenic 25.0%
! TGATTTCAAGAAGCTAATAA+AGG - chr1_1:15804571-15804590 Msa0010490:CDS 25.0%
!!! AGACTTATTGTACTTTTTCA+CGG - chr1_1:15804673-15804692 Msa0010490:intron 25.0%
! TGATGTGAAATTCTATCAAA+TGG - chr1_1:15804831-15804850 Msa0010490:CDS 25.0%
! TTTAAGAATTGAGTGTAAGA+TGG + chr1_1:15805038-15805057 None:intergenic 25.0%
! TACTTTAACCTATAATTGAG+TGG + chr1_1:15805192-15805211 None:intergenic 25.0%
!!! AGAAGTTAAAACTTGCTATA+TGG - chr1_1:15805297-15805316 Msa0010490:intron 25.0%
!!! GAAGTTAAAACTTGCTATAT+GGG - chr1_1:15805298-15805317 Msa0010490:intron 25.0%
! TTTACCATAAAAACACACAA+GGG + chr1_1:15805666-15805685 None:intergenic 25.0%
!! TTTTACCATAAAAACACACA+AGG + chr1_1:15805667-15805686 None:intergenic 25.0%
!!! GAAATAAAATCGATTAGCTT+AGG + chr1_1:15805741-15805760 None:intergenic 25.0%
!!! TCGATTTTATTTCGAAATTC+AGG - chr1_1:15805748-15805767 Msa0010490:intron 25.0%
! TGTTTCATCCAAAATATTGA+CGG + chr1_1:15805914-15805933 None:intergenic 25.0%
!!! TCAATATTTTGGATGAAACA+TGG - chr1_1:15805914-15805933 Msa0010490:intron 25.0%
!! TGTTACTAAGTTTCTCATTT+TGG - chr1_1:15805985-15806004 Msa0010490:intron 25.0%
!! TTTGGCATTTGATAATCATT+TGG - chr1_1:15806003-15806022 Msa0010490:intron 25.0%
! TATACAGTGTTGTCAAATAT+CGG + chr1_1:15806188-15806207 None:intergenic 25.0%
! TACTAAAGTCATTGCATATA+TGG - chr1_1:15806259-15806278 Msa0010490:intron 25.0%
! GCATATATGGATATAAAGAT+TGG - chr1_1:15806272-15806291 Msa0010490:intron 25.0%
! TGACTAATAACTAATTCTTC+AGG - chr1_1:15806426-15806445 Msa0010490:intron 25.0%
! GACTAATAACTAATTCTTCA+GGG - chr1_1:15806427-15806446 Msa0010490:intron 25.0%
! ATTACATTTAGAAGCAAAAC+AGG + chr1_1:15806649-15806668 None:intergenic 25.0%
! AAACTGACTGATAGATAAAT+GGG + chr1_1:15806726-15806745 None:intergenic 25.0%
! TAAACTGACTGATAGATAAA+TGG + chr1_1:15806727-15806746 None:intergenic 25.0%
! TATAAACTTATCAGTGAATC+TGG - chr1_1:15806750-15806769 Msa0010490:intron 25.0%
! ATAAACTTATCAGTGAATCT+GGG - chr1_1:15806751-15806770 Msa0010490:intron 25.0%
! TGCAAATGCAAATTCATAAA+TGG + chr1_1:15806916-15806935 None:intergenic 25.0%
! TCAAAACTTAACACAAAGTT+TGG + chr1_1:15806952-15806971 None:intergenic 25.0%
! ACTTTCCTAAAATATGAGAT+AGG + chr1_1:15807012-15807031 None:intergenic 25.0%
!!! TCATATTTTAGGAAAGTGAA+AGG - chr1_1:15807015-15807034 Msa0010490:intron 25.0%
!!! CATATTTTAGGAAAGTGAAA+GGG - chr1_1:15807016-15807035 Msa0010490:intron 25.0%
! TTCACAAGAAAAAATTGTCA+AGG + chr1_1:15807252-15807271 None:intergenic 25.0%
! TGATAAGTTTAACTACTTGA+AGG + chr1_1:15807295-15807314 None:intergenic 25.0%
!! AAATCAGTATTTTCAGAAAG+TGG - chr1_1:15807402-15807421 Msa0010490:intron 25.0%
!! TGGAAGTAATGTTTCAATTT+TGG - chr1_1:15807422-15807441 Msa0010490:intron 25.0%
!! GGAAGTAATGTTTCAATTTT+GGG - chr1_1:15807423-15807442 Msa0010490:intron 25.0%
!!! TGGTGATTATGATGTTTTTA+AGG - chr1_1:15807574-15807593 Msa0010490:intron 25.0%
! CATCAATGCATTAAAAAAGT+AGG + chr1_1:15807717-15807736 None:intergenic 25.0%
! TAATGAAACAGAAAGCAAAA+TGG + chr1_1:15807886-15807905 None:intergenic 25.0%
! TCATTATTATGTGAACCAAA+AGG - chr1_1:15807900-15807919 Msa0010490:exon 25.0%
AATGGATGTTTCTTCTTCTT+CGG - chr1_1:15803767-15803786 Msa0010490:three_prime_UTR 30.0%
TTGTTCAAGCTTCTTATGAT+TGG - chr1_1:15803816-15803835 Msa0010490:three_prime_UTR 30.0%
TTTGTGAACAAACCAATAGT+GGG + chr1_1:15803909-15803928 None:intergenic 30.0%
! TTTTGTGAACAAACCAATAG+TGG + chr1_1:15803910-15803929 None:intergenic 30.0%
!!! TCTGTGTTTTTTCAATGTAG+TGG - chr1_1:15803991-15804010 Msa0010490:three_prime_UTR 30.0%
!! CGTACTATTAACATTGATTC+TGG - chr1_1:15804046-15804065 Msa0010490:three_prime_UTR 30.0%
AGAGTGACATAAAGTGATTT+AGG - chr1_1:15804125-15804144 Msa0010490:CDS 30.0%
ATTCAAACATGCATTCAAAG+TGG + chr1_1:15804238-15804257 None:intergenic 30.0%
CCATACCAAAATCAAACTTA+CGG + chr1_1:15804268-15804287 None:intergenic 30.0%
!! AAGTTTGATTTTGGTATGGT+CGG - chr1_1:15804269-15804288 Msa0010490:intron 30.0%
CCTCAAATGTGATTAATGTT+CGG + chr1_1:15804414-15804433 None:intergenic 30.0%
! AGTCAAATGTGATTTGACTT+CGG + chr1_1:15804444-15804463 None:intergenic 30.0%
ATCACATTTGACTAACCAAA+AGG - chr1_1:15804451-15804470 Msa0010490:intron 30.0%
! ACTAACCAAAAGGTGATTTT+TGG - chr1_1:15804461-15804480 Msa0010490:intron 30.0%
CAAGATATTGCATGAATGTA+GGG - chr1_1:15804790-15804809 Msa0010490:CDS 30.0%
AAGATATTGCATGAATGTAG+GGG - chr1_1:15804791-15804810 Msa0010490:CDS 30.0%
ATTCTATCAAATGGCATTAG+TGG - chr1_1:15804840-15804859 Msa0010490:CDS 30.0%
AATTTAAGGAATCAGAATCG+TGG - chr1_1:15805000-15805019 Msa0010490:intron 30.0%
AATTTATATTGCATTGGGGA+AGG - chr1_1:15805085-15805104 Msa0010490:intron 30.0%
CATATGGCTTCTTAAATGAA+AGG + chr1_1:15805122-15805141 None:intergenic 30.0%
AAGAAGCCATATGAATGTTA+CGG - chr1_1:15805129-15805148 Msa0010490:intron 30.0%
TAACCTATAATTGAGTGGTA+GGG + chr1_1:15805187-15805206 None:intergenic 30.0%
TTAACCTATAATTGAGTGGT+AGG + chr1_1:15805188-15805207 None:intergenic 30.0%
GTTAAATATGTTACACTTGG+TGG - chr1_1:15805272-15805291 Msa0010490:intron 30.0%
!!! CATGCTGATTCAGTTTATTT+TGG - chr1_1:15805336-15805355 Msa0010490:intron 30.0%
!! CTTACTGGTTCATATTATAG+AGG - chr1_1:15805454-15805473 Msa0010490:intron 30.0%
!! TTATCCCTTGTGTGTTTTTA+TGG - chr1_1:15805659-15805678 Msa0010490:intron 30.0%
TTTAGAAGGAAATGTACAAG+AGG + chr1_1:15805788-15805807 None:intergenic 30.0%
!! TGATATGTTCATTTTCAAGC+TGG - chr1_1:15805815-15805834 Msa0010490:intron 30.0%
!!! ATTCTTTTTCGAGATTGAAG+TGG - chr1_1:15805847-15805866 Msa0010490:intron 30.0%
! GAAATATGCCGTCAATATTT+TGG - chr1_1:15805903-15805922 Msa0010490:intron 30.0%
CAAATCTTCTGTATTTGCAT+AGG + chr1_1:15805967-15805986 None:intergenic 30.0%
AATACCAATGTTATTGATGG+CGG - chr1_1:15806048-15806067 Msa0010490:intron 30.0%
AATGACAAATTTGTGAAGGA+TGG + chr1_1:15806119-15806138 None:intergenic 30.0%
! AAATTTGTCATTGCGGTTTT+CGG - chr1_1:15806127-15806146 Msa0010490:intron 30.0%
GTACTTAAAACCTCAAATCT+AGG - chr1_1:15806316-15806335 Msa0010490:intron 30.0%
! CAAAGTATTTGATCATGACA+TGG + chr1_1:15806353-15806372 None:intergenic 30.0%
! ACTTTGAAAGCTTAAACTGT+CGG - chr1_1:15806367-15806386 Msa0010490:CDS 30.0%
CATATTGTACATACATCTTG+AGG + chr1_1:15806482-15806501 None:intergenic 30.0%
AAAGCTGAATAGTGAATTCA+GGG - chr1_1:15806527-15806546 Msa0010490:intron 30.0%
! GTTTGCCTATCTCATATTTT+AGG - chr1_1:15807004-15807023 Msa0010490:intron 30.0%
CAAGAAAAAATTGTCAAGGA+AGG + chr1_1:15807248-15807267 None:intergenic 30.0%
CAAAATCTGGAAACAACAAA+AGG + chr1_1:15807452-15807471 None:intergenic 30.0%
!!! CTTTTGTTGTTTCCAGATTT+TGG - chr1_1:15807450-15807469 Msa0010490:intron 30.0%
ATTCACATCATACTGAAAAG+TGG + chr1_1:15807612-15807631 None:intergenic 30.0%
TATGAAATCTGTCTCTACAT+AGG - chr1_1:15807744-15807763 Msa0010490:intron 30.0%
TTATTATGTGAACCAAAAGG+AGG - chr1_1:15807903-15807922 Msa0010490:exon 30.0%
! AATCGCGGTTTATTCTGAAA+TGG - chr1_1:15803749-15803768 Msa0010490:three_prime_UTR 35.0%
GAACAAGTAATCGAATTCAG+CGG + chr1_1:15803802-15803821 None:intergenic 35.0%
! CTTCTTATGATTGGTGATTC+TGG - chr1_1:15803825-15803844 Msa0010490:three_prime_UTR 35.0%
!! GCTCTAGAATTATTCGTTTG+AGG - chr1_1:15804015-15804034 Msa0010490:three_prime_UTR 35.0%
!! TAACATTGATTCTGGTTCCA+CGG - chr1_1:15804054-15804073 Msa0010490:three_prime_UTR 35.0%
!! TGAAGCCGTAAGTTTGATTT+TGG - chr1_1:15804260-15804279 Msa0010490:intron 35.0%
!! CCGTAAGTTTGATTTTGGTA+TGG - chr1_1:15804265-15804284 Msa0010490:intron 35.0%
CCGAACATTAATCACATTTG+AGG - chr1_1:15804411-15804430 Msa0010490:intron 35.0%
!! AACCAAAAGGTGATTTTTGG+AGG - chr1_1:15804464-15804483 Msa0010490:intron 35.0%
CCATGTTCTTCTTGAAATCA+TGG + chr1_1:15804624-15804643 None:intergenic 35.0%
CCATGATTTCAAGAAGAACA+TGG - chr1_1:15804621-15804640 Msa0010490:CDS 35.0%
AATAAGTCTTCGCATCTGTT+TGG + chr1_1:15804662-15804681 None:intergenic 35.0%
!! TAAGAGGTTTGGTTTGGTTT+GGG - chr1_1:15804731-15804750 Msa0010490:intron 35.0%
GCAAGATATTGCATGAATGT+AGG - chr1_1:15804789-15804808 Msa0010490:CDS 35.0%
AGATATTGCATGAATGTAGG+GGG - chr1_1:15804792-15804811 Msa0010490:CDS 35.0%
CACAAACCGTAACATTCATA+TGG + chr1_1:15805138-15805157 None:intergenic 35.0%
GACTCTTATGAACATAATGC+AGG - chr1_1:15805236-15805255 Msa0010490:intron 35.0%
!! AAAACTTGCTATATGGGACA+CGG - chr1_1:15805304-15805323 Msa0010490:intron 35.0%
! TCATATTATAGAGGTGCACA+AGG - chr1_1:15805463-15805482 Msa0010490:intron 35.0%
AGGTGCACAAGGAATAATTA+TGG - chr1_1:15805474-15805493 Msa0010490:intron 35.0%
GGTGCACAAGGAATAATTAT+GGG - chr1_1:15805475-15805494 Msa0010490:intron 35.0%
CTACGAAATGGAGAATATCA+AGG + chr1_1:15805514-15805533 None:intergenic 35.0%
ATATTCATGGTATAGCAAGC+AGG + chr1_1:15805545-15805564 None:intergenic 35.0%
GAACTGTAAATCATGCAACA+TGG - chr1_1:15805610-15805629 Msa0010490:intron 35.0%
ATCTTCTGTATTTGCATAGG+AGG + chr1_1:15805964-15805983 None:intergenic 35.0%
CCTTCACAAATTTGTCATTG+CGG - chr1_1:15806120-15806139 Msa0010490:intron 35.0%
CTTAAAACCTCAAATCTAGG+AGG - chr1_1:15806319-15806338 Msa0010490:intron 35.0%
! CTTTGAAAGCTTAAACTGTC+GGG - chr1_1:15806368-15806387 Msa0010490:CDS 35.0%
TAACTAATTCTTCAGGGTCA+AGG - chr1_1:15806433-15806452 Msa0010490:intron 35.0%
GAAAGCTGAATAGTGAATTC+AGG - chr1_1:15806526-15806545 Msa0010490:intron 35.0%
AAGCTGAATAGTGAATTCAG+GGG - chr1_1:15806528-15806547 Msa0010490:intron 35.0%
TGTTGGAAACAAAGTTGACA+AGG - chr1_1:15806886-15806905 Msa0010490:intron 35.0%
! AAATGTTGAGCAGTGTTTTG+AGG - chr1_1:15807118-15807137 Msa0010490:intron 35.0%
!! TTTTGAGGAGCTTGTAATGA+AGG - chr1_1:15807133-15807152 Msa0010490:intron 35.0%
!! TTCATGTTTTTGAGGACATG+AGG + chr1_1:15807174-15807193 None:intergenic 35.0%
ACATCATACTGAAAAGTGGA+GGG + chr1_1:15807608-15807627 None:intergenic 35.0%
TCGAAGCTTAAACTCAATCG+CGG - chr1_1:15803734-15803753 Msa0010490:three_prime_UTR 40.0%
! ATGATTGGTGATTCTGGTGT+TGG - chr1_1:15803831-15803850 Msa0010490:three_prime_UTR 40.0%
GAAGATCTTTCTCCCACTAT+TGG - chr1_1:15803894-15803913 Msa0010490:three_prime_UTR 40.0%
!! AACATTGATTCTGGTTCCAC+GGG - chr1_1:15804055-15804074 Msa0010490:three_prime_UTR 40.0%
! AAATTCAATTTTCGTCCCCG+TGG + chr1_1:15804074-15804093 None:intergenic 40.0%
! GACCTCCAAAAATCACCTTT+TGG + chr1_1:15804469-15804488 None:intergenic 40.0%
!! GATTTTTGGAGGTCTAGACT+TGG - chr1_1:15804475-15804494 Msa0010490:intron 40.0%
TCTAGACTTGGAACCAAATG+TGG - chr1_1:15804487-15804506 Msa0010490:intron 40.0%
CTAGACTTGGAACCAAATGT+GGG - chr1_1:15804488-15804507 Msa0010490:intron 40.0%
AGGAAGCTTCTGTAGTAATG+CGG - chr1_1:15804591-15804610 Msa0010490:CDS 40.0%
! GTTCACTAAGAGGTTTGGTT+TGG - chr1_1:15804725-15804744 Msa0010490:intron 40.0%
!! CTAAGAGGTTTGGTTTGGTT+TGG - chr1_1:15804730-15804749 Msa0010490:intron 40.0%
!! AAGAGGTTTGGTTTGGTTTG+GGG - chr1_1:15804732-15804751 Msa0010490:intron 40.0%
AAAGGACATGTGAGACAACA+AGG + chr1_1:15804885-15804904 None:intergenic 40.0%
AAAGAGCTTCTCTCTCATAG+TGG - chr1_1:15804966-15804985 Msa0010490:intron 40.0%
AAGAGCTTCTCTCTCATAGT+GGG - chr1_1:15804967-15804986 Msa0010490:intron 40.0%
!! TGGGTGTTGGGAGAAATTTA+AGG - chr1_1:15804986-15805005 Msa0010490:intron 40.0%
TGAATGTTACGGTTTGTGTG+TGG - chr1_1:15805140-15805159 Msa0010490:intron 40.0%
GGGATGATAAAACAGCATCA+TGG + chr1_1:15805167-15805186 None:intergenic 40.0%
CATCCCTACCACTCAATTAT+AGG - chr1_1:15805181-15805200 Msa0010490:intron 40.0%
!! AAACTTGCTATATGGGACAC+GGG - chr1_1:15805305-15805324 Msa0010490:intron 40.0%
GAAAGGTTTCGAACACTTAC+TGG - chr1_1:15805439-15805458 Msa0010490:intron 40.0%
!! CGATTAGCTTAGGCTATACA+TGG + chr1_1:15805731-15805750 None:intergenic 40.0%
CTTTCCGCCATCAATAACAT+TGG + chr1_1:15806055-15806074 None:intergenic 40.0%
GACAAATTTGTGAAGGATGG+CGG + chr1_1:15806116-15806135 None:intergenic 40.0%
CCGCAATGACAAATTTGTGA+AGG + chr1_1:15806123-15806142 None:intergenic 40.0%
ATCATAGCCTCCTAGATTTG+AGG + chr1_1:15806329-15806348 None:intergenic 40.0%
AATAGTGAATTCAGGGGTCA+AGG - chr1_1:15806534-15806553 Msa0010490:intron 40.0%
GATTGCATCAAGATGCTTGT+TGG - chr1_1:15806869-15806888 Msa0010490:intron 40.0%
TGAAAGGGCTGTTACCAAAA+AGG - chr1_1:15807031-15807050 Msa0010490:intron 40.0%
TGGACTTTGCAAGGCAATAT+GGG - chr1_1:15807060-15807079 Msa0010490:intron 40.0%
TTGCACTGCATTCAGTATAG+AGG + chr1_1:15807088-15807107 None:intergenic 40.0%
!! AACTCAAGCTTGCTGAAAGT+TGG - chr1_1:15807205-15807224 Msa0010490:intron 40.0%
GCAACTAACTTGAAGCAAGT+AGG + chr1_1:15807373-15807392 None:intergenic 40.0%
CACATCATACTGAAAAGTGG+AGG + chr1_1:15807609-15807628 None:intergenic 40.0%
ACTGCAGAAGATCCTGAATT+TGG - chr1_1:15807822-15807841 Msa0010490:CDS 40.0%
CCACAGAAGAAACCAAATTC+AGG + chr1_1:15807837-15807856 None:intergenic 40.0%
! CCTGAATTTGGTTTCTTCTG+TGG - chr1_1:15807834-15807853 Msa0010490:CDS 40.0%
! TTTGGTTTCTTCTGTGGTTG+TGG - chr1_1:15807840-15807859 Msa0010490:CDS 40.0%
!! ACATTGATTCTGGTTCCACG+GGG - chr1_1:15804056-15804075 Msa0010490:three_prime_UTR 45.0%
!! GATTTTGGTATGGTCGGACT+CGG - chr1_1:15804275-15804294 Msa0010490:intron 45.0%
CGTCTGTTTGGATCTGTGTT+TGG - chr1_1:15804516-15804535 Msa0010490:intron 45.0%
GTTCACCTAACGTGAGTTTG+CGG - chr1_1:15804540-15804559 Msa0010490:CDS 45.0%
TTGTTCCGCAAACTCACGTT+AGG + chr1_1:15804548-15804567 None:intergenic 45.0%
GCATCTGTTTGGATATGCGT+TGG + chr1_1:15804651-15804670 None:intergenic 45.0%
CTCGAAAGTTCCCATCTCAA+GGG + chr1_1:15804704-15804723 None:intergenic 45.0%
CTTGAGATGGGAACTTTCGA+GGG - chr1_1:15804703-15804722 Msa0010490:intron 45.0%
ACTTTCGAGGGTTCACTAAG+AGG - chr1_1:15804715-15804734 Msa0010490:intron 45.0%
!! TTCTCTCTCATAGTGGGTGT+TGG - chr1_1:15804973-15804992 Msa0010490:intron 45.0%
!! TCTCTCTCATAGTGGGTGTT+GGG - chr1_1:15804974-15804993 Msa0010490:intron 45.0%
! GTATTTTCTTCTCGTGCAGC+TGG - chr1_1:15805412-15805431 Msa0010490:intron 45.0%
CAGGAAAGGTAGCTACGAAA+TGG + chr1_1:15805526-15805545 None:intergenic 45.0%
CATGGTATAGCAAGCAGGAA+AGG + chr1_1:15805540-15805559 None:intergenic 45.0%
CAAAAATCCGACACATCCGA+CGG - chr1_1:15806076-15806095 Msa0010490:intron 45.0%
TTGTCAAATATCGGCCATGG+CGG + chr1_1:15806179-15806198 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG + chr1_1:15806182-15806201 None:intergenic 45.0%
AAGCTTAAACTGTCGGGTGA+AGG - chr1_1:15806374-15806393 Msa0010490:CDS 45.0%
GGCTGTTACCAAAAAGGAAG+CGG - chr1_1:15807037-15807056 Msa0010490:intron 45.0%
TGTTACCAAAAAGGAAGCGG+TGG - chr1_1:15807040-15807059 Msa0010490:intron 45.0%
! AAAGTCCACCGCTTCCTTTT+TGG + chr1_1:15807048-15807067 None:intergenic 45.0%
GTGGACTTTGCAAGGCAATA+TGG - chr1_1:15807059-15807078 Msa0010490:intron 45.0%
!! GTTTTTGAGGACATGAGGAG+AGG + chr1_1:15807169-15807188 None:intergenic 45.0%
AAGCAAGTAGGTGCTTAGGA+GGG + chr1_1:15807361-15807380 None:intergenic 45.0%
CTTGAAGCAAGTAGGTGCTT+AGG + chr1_1:15807365-15807384 None:intergenic 45.0%
!! GGCTTGGTGTATCCAAAATC+TGG + chr1_1:15807465-15807484 None:intergenic 45.0%
!!! ATAATATTTTAAATAGATTA+TGG + chr1_1:15806618-15806637 None:intergenic 5.0%
TCACGGAAAGACCCTTGAGA+TGG - chr1_1:15804690-15804709 Msa0010490:intron 50.0%
CACGGAAAGACCCTTGAGAT+GGG - chr1_1:15804691-15804710 Msa0010490:intron 50.0%
CCTCGAAAGTTCCCATCTCA+AGG + chr1_1:15804705-15804724 None:intergenic 50.0%
CCTTGAGATGGGAACTTTCG+AGG - chr1_1:15804702-15804721 Msa0010490:intron 50.0%
CGAGGGTTCACTAAGAGGTT+TGG - chr1_1:15804720-15804739 Msa0010490:intron 50.0%
GAATGTAGGGGGAAAGTGAC+AGG - chr1_1:15804803-15804822 Msa0010490:CDS 50.0%
! CGTCGGATGTGTCGGATTTT+TGG + chr1_1:15806078-15806097 None:intergenic 50.0%
! TCGGGTGAAGGCACAAAAGA+TGG - chr1_1:15806386-15806405 Msa0010490:CDS 50.0%
AGCAAGTAGGTGCTTAGGAG+GGG + chr1_1:15807360-15807379 None:intergenic 50.0%
GAAGCAAGTAGGTGCTTAGG+AGG + chr1_1:15807362-15807381 None:intergenic 50.0%
TTTGGATACACCAAGCCTCC+TGG - chr1_1:15807468-15807487 Msa0010490:intron 50.0%
GGTGATGCATCAGACTCTTG+CGG + chr1_1:15807538-15807557 None:intergenic 50.0%
AGGATCTTCTGCAGTGCAGA+GGG + chr1_1:15807817-15807836 None:intergenic 50.0%
! CGCGAAAGAAAGCCTCCTTT+TGG + chr1_1:15807918-15807937 None:intergenic 50.0%
GGTCGGACTCGGAACTGATT+TGG - chr1_1:15804286-15804305 Msa0010490:intron 55.0%
ACAGACGCTTCGCCCACATT+TGG + chr1_1:15804503-15804522 None:intergenic 55.0%
! ATGTGGGCGAAGCGTCTGTT+TGG - chr1_1:15804504-15804523 Msa0010490:intron 55.0%
TTCTTCTCGTGCAGCTGGAC+AGG - chr1_1:15805417-15805436 Msa0010490:intron 55.0%
AATCCGACACATCCGACGGA+TGG - chr1_1:15806080-15806099 Msa0010490:intron 55.0%
!! CATGGCGGCATAGCGGATAT+CGG + chr1_1:15806164-15806183 None:intergenic 55.0%
! AGGAAGCGGTGGACTTTGCA+AGG - chr1_1:15807051-15807070 Msa0010490:intron 55.0%
AAGTAGGTGCTTAGGAGGGG+GGG + chr1_1:15807357-15807376 None:intergenic 55.0%
CAAGTAGGTGCTTAGGAGGG+GGG + chr1_1:15807358-15807377 None:intergenic 55.0%
GCAAGTAGGTGCTTAGGAGG+GGG + chr1_1:15807359-15807378 None:intergenic 55.0%
TCTGCAGTGCAGAGGGGAAT+GGG + chr1_1:15807810-15807829 None:intergenic 55.0%
TTCTGCAGTGCAGAGGGGAA+TGG + chr1_1:15807811-15807830 None:intergenic 55.0%
GGATCTTCTGCAGTGCAGAG+GGG + chr1_1:15807816-15807835 None:intergenic 55.0%
CAGGATCTTCTGCAGTGCAG+AGG + chr1_1:15807818-15807837 None:intergenic 55.0%
CTCGTGCAGCTGGACAGGAA+AGG - chr1_1:15805422-15805441 Msa0010490:intron 60.0%
GCACCATCCGTCGGATGTGT+CGG + chr1_1:15806086-15806105 None:intergenic 60.0%
! ACATCCGACGGATGGTGCTG+TGG - chr1_1:15806088-15806107 Msa0010490:intron 60.0%
!! GGCATAGCGGATATCGGTGG+CGG + chr1_1:15806158-15806177 None:intergenic 60.0%
CGATATCCGCTATGCCGCCA+TGG - chr1_1:15806162-15806181 Msa0010490:intron 60.0%
TATCGGCCATGGCGGCATAG+CGG + chr1_1:15806171-15806190 None:intergenic 60.0%
AGTAGGTGCTTAGGAGGGGG+GGG + chr1_1:15807356-15807375 None:intergenic 60.0%
TACACCAAGCCTCCTGGCTG+AGG - chr1_1:15807474-15807493 Msa0010490:intron 60.0%
ACACCAAGCCTCCTGGCTGA+GGG - chr1_1:15807475-15807494 Msa0010490:intron 60.0%
CACCTAGCAGCTGTTGCGCA+TGG - chr1_1:15807554-15807573 Msa0010490:intron 60.0%
CACCATGCGCAACAGCTGCT+AGG + chr1_1:15807559-15807578 None:intergenic 60.0%
GGCACCACAGCACCATCCGT+CGG + chr1_1:15806095-15806114 None:intergenic 65.0%
!! GGCGGCATAGCGGATATCGG+TGG + chr1_1:15806161-15806180 None:intergenic 65.0%
CAGATGAGCCCTCAGCCAGG+AGG + chr1_1:15807486-15807505 None:intergenic 65.0%
CTCCTGGCTGAGGGCTCATC+TGG - chr1_1:15807484-15807503 Msa0010490:intron 65.0%
CACCAGATGAGCCCTCAGCC+AGG + chr1_1:15807489-15807508 None:intergenic 65.0%
GAGCCCTCAGCCAGGAGGCT+TGG + chr1_1:15807481-15807500 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 15803641 15808032 15803641 ID=Msa0010490;Name=Msa0010490
chr1_1 mRNA 15803641 15808032 15803641 ID=Msa0010490-mRNA-1;Parent=Msa0010490;Name=Msa0010490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=127|1|1|1|1|1|6|453|215
chr1_1 exon 15803641 15804207 15803641 ID=Msa0010490-mRNA-1:exon:5740;Parent=Msa0010490-mRNA-1
chr1_1 exon 15804519 15804647 15804519 ID=Msa0010490-mRNA-1:exon:5739;Parent=Msa0010490-mRNA-1
chr1_1 exon 15804766 15804887 15804766 ID=Msa0010490-mRNA-1:exon:5738;Parent=Msa0010490-mRNA-1
chr1_1 exon 15806177 15806242 15806177 ID=Msa0010490-mRNA-1:exon:5737;Parent=Msa0010490-mRNA-1
chr1_1 exon 15806347 15806415 15806347 ID=Msa0010490-mRNA-1:exon:5736;Parent=Msa0010490-mRNA-1
chr1_1 exon 15807758 15808032 15807758 ID=Msa0010490-mRNA-1:exon:5735;Parent=Msa0010490-mRNA-1
chr1_1 five_prime_UTR 15807906 15808032 15807906 ID=Msa0010490-mRNA-1:five_prime_utr;Parent=Msa0010490-mRNA-1
chr1_1 CDS 15807758 15807905 15807758 ID=Msa0010490-mRNA-1:cds;Parent=Msa0010490-mRNA-1
chr1_1 CDS 15806347 15806415 15806347 ID=Msa0010490-mRNA-1:cds;Parent=Msa0010490-mRNA-1
chr1_1 CDS 15806177 15806242 15806177 ID=Msa0010490-mRNA-1:cds;Parent=Msa0010490-mRNA-1
chr1_1 CDS 15804766 15804887 15804766 ID=Msa0010490-mRNA-1:cds;Parent=Msa0010490-mRNA-1
chr1_1 CDS 15804519 15804647 15804519 ID=Msa0010490-mRNA-1:cds;Parent=Msa0010490-mRNA-1
chr1_1 CDS 15804094 15804207 15804094 ID=Msa0010490-mRNA-1:cds;Parent=Msa0010490-mRNA-1
chr1_1 three_prime_UTR 15803641 15804093 15803641 ID=Msa0010490-mRNA-1:three_prime_utr;Parent=Msa0010490-mRNA-1
Gene Sequence

>Msa0010490

ATGGATGTTTCTTCTTCTTCGGCGAGTAACGCCGCTGAATTCGATTACTTGTTCAAGCTTCTTATGATTGGTGATTCTGGTGTTGGCAAAAGCACGTTGCTTCTTCGATTCACTTCTGATAACTTCGAAGATCTTTCTCCCACTATTGGTGTAGACTTCAAAGTTAAATATGTTACACTTGGTGGAAAGAAGTTAAAACTTGCTATATGGGACACGGCTGGACAGGAAAGGTTTCGAACACTTACTGGTTCATATTATAGAGGTGCACAAGGAATAATTATGGTATACGATGTAACGCGACGTGAAACATTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACTTATACTCAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGACAAGGAAAGTGAAAGGGCTGTTACCAAAAAGGAAGCGGTGGACTTTGCAAGGCAATATGGGTGCCTCTATACTGAATGCAGTGCAAAAACTCGAGTAAATGTTGAGCAGTGTTTTGAGGAGCTTGTAATGAAGATTTTGGATACACCAAGCCTCCTGGCTGAGGGCTCATCTGGTGTGAAAAAGAACATCTTCAAGCAGAAACCGCAAGAGTCTGATGCATCACCTAGCAGCTGTTGCGCATGGTGA
Protein sequence

>Msa0010490

MDVSSSSASNAAEFDYLFKLLMIGDSGVGKSTLLLRFTSDNFEDLSPTIGVDFKVKYVTLGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERAVTKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVMKILDTPSLLAEGSSGVKKNIFKQKPQESDASPSSCCAW*